RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CASP16 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000067882

Ensembl transcript IDs: ENSMUST00000088673.5, ENSMUST00000182769.10

Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp AGGACCACAAGGGCACACCCCACAGCACCCCTCTGGACATCCAGCTaGTCCCGGGACAAATGCAGCTCCTTAAGGAGGCTCTGGACTGGG +
Preference number: 5 (lower is better)
Translates to: RTTRAHPTAPLWTSS*SRDKCSSLRRLWTG
Trigger: CCCAGTCCAGAGCCTCCTTAAGGAGCTGCATTTGTCCCGGGAGCAGCTGGATGTCCAGAGGGGTGCTGTGGGGTGTGCCCTTGTGGTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS TCA 90 bp AGAACATCTGCCTGGGTTGGGATGGCTCGGGGTGCTCTCAGCCAATaGCGGTACCATGGGAGAGCTCTTGACCCCACACCAGGGTCCCTG +
Preference number: 5 (lower is better)
Translates to: RTSAWVGMARGALSQ*RYHGRALDPTPGSL
Trigger: CAGGGACCCTGGTGTGGGGTCAAGAGCTCTCCCATGGTACCGTCATTGGCTGAGAGCACCCCGAGCCATCCCAACCCAGGCAGATGTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088673.5
ENSMUST00000182769.10
CDS GCA 90 bp CCCACAGCAGACCTGGAGCAGGAAGATCTTGGGGTGGCCATGCAGTaGCTGGCAGCAGCTCAGTTCCTGCACCAGCACTTCTGCCTGTAC +
Preference number: 5 (lower is better)
Translates to: PTADLEQEDLGVAMQ*LAAAQFLHQHFCLY
Trigger: GTACAGGCAGAAGTGCTGGTGCAGGAACTGAGCTGCTGCCAGGCACTGCATGGCCACCCCAAGATCTTCCTGCTCCAGGTCTGCTGTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088673.5
ENSMUST00000182769.10
CDS CCA 90 bp CAAGCTGCGGATCTCCAGGCAGGCTTTGCACAGCTCATCACTGTCTaGCCCCAGGACGTCCAGCTCACACACCCGCCTGTTGACCTCAGT +
Preference number: 5 (lower is better)
Translates to: QAADLQAGFAQLITV*PQDVQLTHPPVDLS
Trigger: ACTGAGGTCAACAGGCGGGTGTGTGAGCTGGACGTCCTGGGGCCAGACAGTGATGAGCTGTGCAAAGCCTGCCTGGAGATCCGCAGCTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088673.5
ENSMUST00000182769.10
CDS TCA 90 bp AGGGGAAGTGGTGAGGTTGCTCGTCCTATAAACAGAGCCGGCGCCTaGGCAAGCTGCGGATCTCCAGGCAGGCTTTGCACAGCTCATCAC +
Preference number: 5 (lower is better)
Translates to: RGSGEVARPINRAGA*ASCGSPGRLCTAHH
Trigger: GTGATGAGCTGTGCAAAGCCTGCCTGGAGATCCGCAGCTTGCTCAGGCGCCGGCTCTGTTTATAGGACGAGCAACCTCACCACTTCCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS CCA 90 bp CAGCAGACCTGGAGCAGGAAGATCTTGGGGTGGCCATGCAGTGCCTaGCAGCAGCTCAGTTCCTGCACCAGCACTTCTGCCTGTACTTCT +
Preference number: 5 (lower is better)
Translates to: QQTWSRKILGWPCSA*QQLSSCTSTSACTS
Trigger: AGAAGTACAGGCAGAAGTGCTGGTGCAGGAACTGAGCTGCTGCCAGGCACTGCATGGCCACCCCAAGATCTTCCTGCTCCAGGTCTGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088673.5
ENSMUST00000182769.10
CDS TCA 90 bp AGCCCTGGTTCCAGACAGGTCATATTGTGTGCTTGCTCTAGGGTCTaGCTCCAGCCCCCAGGGCTCCTCATCTCCCAAACACAGAGTCCC +
Preference number: 5 (lower is better)
Translates to: SPGSRQVILCACSRV*LQPPGLLISQTQSP
Trigger: GGGACTCTGTGTTTGGGAGATGAGGAGCCCTGGGGGCTGGAGTCAGACCCTAGAGCAAGCACACAATATGACCTGTCTGGAACCAGGGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS TCA 90 bp CTCCCTGGAGTGGAGATAAGGTTGTCTGGAGCATCAGCATGGATCTaGAGAACATCTGCCTGGGTTGGGATGGCTCGGGGTGCTCTCAGC +
Preference number: 5 (lower is better)
Translates to: LPGVEIRLSGASAWI*RTSAWVGMARGALS
Trigger: GCTGAGAGCACCCCGAGCCATCCCAACCCAGGCAGATGTTCTTCAGATCCATGCTGATGCTCCAGACAACCTTATCTCCACTCCAGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS CCA 90 bp CAGCTGCTCCCGGGACAAATGCAGCTCCTTAAGGAGGCTCTGGACTaGGGCCTCTCTCTTCTCACAGTTTTCAAAGCCCAGAGCCTGGAA +
Preference number: 5 (lower is better)
Translates to: QLLPGQMQLLKEALD*GLSLLTVFKAQSLE
Trigger: TTCCAGGCTCTGGGCTTTGAAAACTGTGAGAAGAGAGAGGCCCCAGTCCAGAGCCTCCTTAAGGAGCTGCATTTGTCCCGGGAGCAGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS TCA 90 bp TGCTGTGGCAGACACACCAGGGCTGCAGAGTACCAAGGCTGTCCTTaGACCCTGAACACTGTATTTTCCCTTTCTCCCCAAGCATCCGCC +
Preference number: 5 (lower is better)
Translates to: CCGRHTRAAEYQGCP*TLNTVFSLSPQASA
Trigger: GGCGGATGCTTGGGGAGAAAGGGAAAATACAGTGTTCAGGGTTCAAGGACAGCCTTGGTACTCTGCAGCCCTGGTGTGTCTGCCACAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS TCA 90 bp AGGTTCCTCAATGCTGCCACATCATGCTGTGCTCCTAGTCGGTCTTaGATCACAGCCAGTAGGAGGGCAAGCCCTGGTTCCAGACAGGTC +
Preference number: 5 (lower is better)
Translates to: RFLNAATSCCAPSRS*ITASRRASPGSRQV
Trigger: GACCTGTCTGGAACCAGGGCTTGCCCTCCTACTGGCTGTGATTCAAGACCGACTAGGAGCACAGCATGATGTGGCAGCATTGAGGAACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS GCA 90 bp CTTCTCACAGTTTTCAAAGCCCAGAGCCTGGAACACACCAGCAACTaGTGTGGCAGACACACCAGGGCTGCAGAGTACCAAGGCTGTCCT +
Preference number: 5 (lower is better)
Translates to: LLTVFKAQSLEHTSN*CGRHTRAAEYQGCP
Trigger: AGGACAGCCTTGGTACTCTGCAGCCCTGGTGTGTCTGCCACAGCAGTTGCTGGTGTGTTCCAGGCTCTGGGCTTTGAAAACTGTGAGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS CCA 90 bp CACCTGTGTGCCAAGCCCAGGCTCCAGAAGAAAAGCAGACCCACCTaGAGCATCAGCATGGATCTGAAGAACATCTGCCTGGGTTGGGAT +
Preference number: 5 (lower is better)
Translates to: HLCAKPRLQKKSRPT*SISMDLKNICLGWD
Trigger: ATCCCAACCCAGGCAGATGTTCTTCAGATCCATGCTGATGCTCCAGGTGGGTCTGCTTTTCTTCTGGAGCCTGGGCTTGGCACACAGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088673.5
CDS GCA 90 bp GAGCCTGGAACACACCAGCAACTGCTGTGGCAGACACACCAGGGCTaGAGAGTACCAAGGCTGTCCTTGAACCCTGAACACTGTATTTTC +
Preference number: 5 (lower is better)
Translates to: EPGTHQQLLWQTHQG*RVPRLSLNPEHCIF
Trigger: GAAAATACAGTGTTCAGGGTTCAAGGACAGCCTTGGTACTCTGCAGCCCTGGTGTGTCTGCCACAGCAGTTGCTGGTGTGTTCCAGGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS GCA 90 bp AAGGGAGGTCCTAAAGACTGGGCAGTAGGTGTTCCCTGCAGACTCTaGAAAAGACCTCTGTCAGTAGCTGCAGCAGTGACCAGCGAGGAT +
Preference number: 5 (lower is better)
Translates to: KGGPKDWAVGVPCRL*KRPLSVAAAVTSED
Trigger: ATCCTCGCTGGTCACTGCTGCAGCTACTGACAGAGGTCTTTTGCAGAGTCTGCAGGGAACACCTACTGCCCAGTCTTTAGGACCTCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS CCA 90 bp CAAAGTCCGAGCCCTTTTCATCCCGATAAGCCACACAGCTGTGAATaGTTCCCAGCACCTGTGTGCCAAGCCCAGGCTCCAGAAGAAAAG +
Preference number: 5 (lower is better)
Translates to: QSPSPFHPDKPHSCE*FPAPVCQAQAPEEK
Trigger: CTTTTCTTCTGGAGCCTGGGCTTGGCACACAGGTGCTGGGAACCATTCACAGCTGTGTGGCTTATCGGGATGAAAAGGGCTCGGACTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088673.5
CDS CCA 90 bp CTCATCTCCCAAACACAGAGTCCCCCGAAGGGAGGTCCTAAAGACTaGGCAGTAGGTGTTCCCTGCAGACTCTGCAAAAGACCTCTGTCA +
Preference number: 5 (lower is better)
Translates to: LISQTQSPPKGGPKD*AVGVPCRLCKRPLS
Trigger: TGACAGAGGTCTTTTGCAGAGTCTGCAGGGAACACCTACTGCCCAGTCTTTAGGACCTCCCTTCGGGGGACTCTGTGTTTGGGAGATGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS CAA 72 bp CGGCGCCTGAGCAAGCTGCGGATCTCCAGGCAGGCTTaGCACAGCTCATCACTGTCTGGCCCCAGGACGTCC +
Preference number: 6 (lower is better)
Translates to: RRLSKLRISRQA*HSSSLSGPRTS
Trigger: GGACGTCCTGGGGCCAGACAGTGATGAGCTGTGCAAAGCCTGCCTGGAGATCCGCAGCTTGCTCAGGCGCCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088673.5
ENSMUST00000182769.10
CDS CAA 90 bp AAACAGAGCCGGCGCCTGAGCAAGCTGCGGATCTCCAGGCAGGCTTaGCACAGCTCATCACTGTCTGGCCCCAGGACGTCCAGCTCACAC +
Preference number: 6 (lower is better)
Translates to: KQSRRLSKLRISRQA*HSSSLSGPRTSSSH
Trigger: GTGTGAGCTGGACGTCCTGGGGCCAGACAGTGATGAGCTGTGCAAAGCCTGCCTGGAGATCCGCAGCTTGCTCAGGCGCCGGCTCTGTTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088673.5
ENSMUST00000182769.10
CDS GCA 72 bp GCACCCCTCTGGACATCCAGCTGCTCCCGGGACAAATaGAGCTCCTTAAGGAGGCTCTGGACTGGGGCCTCT +
Preference number: 6 (lower is better)
Translates to: APLWTSSCSRDK*SSLRRLWTGAS
Trigger: AGAGGCCCCAGTCCAGAGCCTCCTTAAGGAGCTGCATTTGTCCCGGGAGCAGCTGGATGTCCAGAGGGGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS GCA 72 bp AGGGCACACCCCACAGCACCCCTCTGGACATCCAGCTaGTCCCGGGACAAATGCAGCTCCTTAAGGAGGCTC +
Preference number: 6 (lower is better)
Translates to: RAHPTAPLWTSS*SRDKCSSLRRL
Trigger: GAGCCTCCTTAAGGAGCTGCATTTGTCCCGGGAGCAGCTGGATGTCCAGAGGGGTGCTGTGGGGTGTGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS GCA 72 bp GACCTGGAGCAGGAAGATCTTGGGGTGGCCATGCAGTaGCTGGCAGCAGCTCAGTTCCTGCACCAGCACTTC +
Preference number: 6 (lower is better)
Translates to: DLEQEDLGVAMQ*LAAAQFLHQHF
Trigger: GAAGTGCTGGTGCAGGAACTGAGCTGCTGCCAGGCACTGCATGGCCACCCCAAGATCTTCCTGCTCCAGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088673.5
ENSMUST00000182769.10
CDS GCA 72 bp CTCAGCTCCTTGACCAGCAGCTGTGGCTGCCTTAGCTaGCCACTGGGGACCATTAGGACCACAAGGGCACAC +
Preference number: 6 (lower is better)
Translates to: LSSLTSSCGCLS*PLGTIRTTRAH
Trigger: GTGTGCCCTTGTGGTCCTAATGGTCCCCAGTGGGCAGCTAAGGCAGCCACAGCTGCTGGTCAAGGAGCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS CCA 72 bp TGGAGCAGGAAGATCTTGGGGTGGCCATGCAGTGCCTaGCAGCAGCTCAGTTCCTGCACCAGCACTTCTGCC +
Preference number: 6 (lower is better)
Translates to: WSRKILGWPCSA*QQLSSCTSTSA
Trigger: GGCAGAAGTGCTGGTGCAGGAACTGAGCTGCTGCCAGGCACTGCATGGCCACCCCAAGATCTTCCTGCTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088673.5
ENSMUST00000182769.10
CDS TCA 72 bp GGTGAGGTTGCTCGTCCTATAAACAGAGCCGGCGCCTaGGCAAGCTGCGGATCTCCAGGCAGGCTTTGCACA +
Preference number: 6 (lower is better)
Translates to: GEVARPINRAGA*ASCGSPGRLCT
Trigger: TGTGCAAAGCCTGCCTGGAGATCCGCAGCTTGCTCAGGCGCCGGCTCTGTTTATAGGACGAGCAACCTCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS TCA 72 bp CTCCCACGCCCAAACTGCTGCATCGATGACAGGGTGTaGAGAGGGGATGTAGGGGAAGTGGTGAGGTTGCTC +
Preference number: 6 (lower is better)
Translates to: LPRPNCCIDDRV*RGDVGEVVRLL
Trigger: GAGCAACCTCACCACTTCCCCTACATCCCCTCTTCACACCCTGTCATCGATGCAGCAGTTTGGGCGTGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS TCA 72 bp AGGCCTGAGCTGATGGGTTTATCCTCAGGGTGGCCTTaGAGCCCAAGGCCTGGCAAAGGTTCCTCAATGCTG +
Preference number: 6 (lower is better)
Translates to: RPELMGLSSGWP*SPRPGKGSSML
Trigger: CAGCATTGAGGAACCTTTGCCAGGCCTTGGGCTTCAAGGCCACCCTGAGGATAAACCCATCAGCTCAGGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS GCA 72 bp ACACACCAGCAACTGCTGTGGCAGACACACCAGGGCTaGAGAGTACCAAGGCTGTCCTTGAACCCTGAACAC +
Preference number: 6 (lower is better)
Translates to: THQQLLWQTHQG*RVPRLSLNPEH
Trigger: GTGTTCAGGGTTCAAGGACAGCCTTGGTACTCTGCAGCCCTGGTGTGTCTGCCACAGCAGTTGCTGGTGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS CCA 72 bp AGCCCTTTTCATCCCGATAAGCCACACAGCTGTGAATaGTTCCCAGCACCTGTGTGCCAAGCCCAGGCTCCA +
Preference number: 6 (lower is better)
Translates to: SPFHPDKPHSCE*FPAPVCQAQAP
Trigger: TGGAGCCTGGGCTTGGCACACAGGTGCTGGGAACCATTCACAGCTGTGTGGCTTATCGGGATGAAAAGGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088673.5
CDS TCA 72 bp AATGCTGCCACATCATGCTGTGCTCCTAGTCGGTCTTaGATCACAGCCAGTAGGAGGGCAAGCCCTGGTTCC +
Preference number: 6 (lower is better)
Translates to: NAATSCCAPSRS*ITASRRASPGS
Trigger: GGAACCAGGGCTTGCCCTCCTACTGGCTGTGATTCAAGACCGACTAGGAGCACAGCATGATGTGGCAGCATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS TCA 72 bp GACAGCTGCAGAGACAGTAAGGATGTCTGCTTGGCCTaGGCTCCCTGGAGTGGAGATAAGGTTGTCTGGAGC +
Preference number: 6 (lower is better)
Translates to: DSCRDSKDVCLA*APWSGDKVVWS
Trigger: GCTCCAGACAACCTTATCTCCACTCCAGGGAGCTCAGGCCAAGCAGACATCCTTACTGTCTCTGCAGCTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS GCA 72 bp GTTTTCAAAGCCCAGAGCCTGGAACACACCAGCAACTaGTGTGGCAGACACACCAGGGCTGCAGAGTACCAA +
Preference number: 6 (lower is better)
Translates to: VFKAQSLEHTSN*CGRHTRAAEYQ
Trigger: TTGGTACTCTGCAGCCCTGGTGTGTCTGCCACAGCAGTTGCTGGTGTGTTCCAGGCTCTGGGCTTTGAAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS CCA 72 bp GCCAAGCCCAGGCTCCAGAAGAAAAGCAGACCCACCTaGAGCATCAGCATGGATCTGAAGAACATCTGCCTG +
Preference number: 6 (lower is better)
Translates to: AKPRLQKKSRPT*SISMDLKNICL
Trigger: CAGGCAGATGTTCTTCAGATCCATGCTGATGCTCCAGGTGGGTCTGCTTTTCTTCTGGAGCCTGGGCTTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088673.5
CDS CCA 72 bp GGGTTTATCCTCAGGGTGGCCTTGAAGCCCAAGGCCTaGCAAAGGTTCCTCAATGCTGCCACATCATGCTGT +
Preference number: 6 (lower is better)
Translates to: GFILRVALKPKA*QRFLNAATSCC
Trigger: ACAGCATGATGTGGCAGCATTGAGGAACCTTTGCCAGGCCTTGGGCTTCAAGGCCACCCTGAGGATAAACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS CCA 72 bp CCCTCGACAGCTGCAGAGACAGTAAGGATGTCTGCTTaGCCTGAGCTCCCTGGAGTGGAGATAAGGTTGTCT +
Preference number: 6 (lower is better)
Translates to: PSTAAETVRMSA*PELPGVEIRLS
Trigger: AGACAACCTTATCTCCACTCCAGGGAGCTCAGGCCAAGCAGACATCCTTACTGTCTCTGCAGCTGTCGAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS TCA 72 bp CCAGGGCTGCAGAGTACCAAGGCTGTCCTTGAACCCTaGACACTGTATTTTCCCTTTCTCCCCAAGCATCCG +
Preference number: 6 (lower is better)
Translates to: PGLQSTKAVLEP*TLYFPFLPKHP
Trigger: CGGATGCTTGGGGAGAAAGGGAAAATACAGTGTTCAGGGTTCAAGGACAGCCTTGGTACTCTGCAGCCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS TCA 72 bp TCTGTCAGTAGCTGCAGCAGTGACCAGCGAGGATGCTaGCTGCAGATTTCCCCCAGATGCAGAAGGAAAGCT +
Preference number: 6 (lower is better)
Translates to: SVSSCSSDQRGC*LQISPRCRRKA
Trigger: AGCTTTCCTTCTGCATCTGGGGGAAATCTGCAGTCAGCATCCTCGCTGGTCACTGCTGCAGCTACTGACAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS TCA 72 bp GTGGAGATAAGGTTGTCTGGAGCATCAGCATGGATCTaGAGAACATCTGCCTGGGTTGGGATGGCTCGGGGT +
Preference number: 6 (lower is better)
Translates to: VEIRLSGASAWI*RTSAWVGMARG
Trigger: ACCCCGAGCCATCCCAACCCAGGCAGATGTTCTTCAGATCCATGCTGATGCTCCAGACAACCTTATCTCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS GCA 72 bp CCTAAAGACTGGGCAGTAGGTGTTCCCTGCAGACTCTaGAAAAGACCTCTGTCAGTAGCTGCAGCAGTGACC +
Preference number: 6 (lower is better)
Translates to: PKDWAVGVPCRL*KRPLSVAAAVT
Trigger: GGTCACTGCTGCAGCTACTGACAGAGGTCTTTTGCAGAGTCTGCAGGGAACACCTACTGCCCAGTCTTTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS CCA 72 bp TGCTCCCGGGACAAATGCAGCTCCTTAAGGAGGCTCTaGACTGGGGCCTCTCTCTTCTCACAGTTTTCAAAG +
Preference number: 6 (lower is better)
Translates to: CSRDKCSSLRRL*TGASLFSQFSK
Trigger: CTTTGAAAACTGTGAGAAGAGAGAGGCCCCAGTCCAGAGCCTCCTTAAGGAGCTGCATTTGTCCCGGGAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS CCA 72 bp CAAACACAGAGTCCCCCGAAGGGAGGTCCTAAAGACTaGGCAGTAGGTGTTCCCTGCAGACTCTGCAAAAGA +
Preference number: 6 (lower is better)
Translates to: QTQSPPKGGPKD*AVGVPCRLCKR
Trigger: TCTTTTGCAGAGTCTGCAGGGAACACCTACTGCCCAGTCTTTAGGACCTCCCTTCGGGGGACTCTGTGTTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS TCA 72 bp AGACACACCAGGGCTGCAGAGTACCAAGGCTGTCCTTaGACCCTGAACACTGTATTTTCCCTTTCTCCCCAA +
Preference number: 6 (lower is better)
Translates to: RHTRAAEYQGCP*TLNTVFSLSPQ
Trigger: TTGGGGAGAAAGGGAAAATACAGTGTTCAGGGTTCAAGGACAGCCTTGGTACTCTGCAGCCCTGGTGTGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10
CDS CAA 72 bp AGATGCAGAAGGAAAGCTTCAGGCTCCCAGACAGCCTaGAGACCACTAGAGAGTAACAGGAAGATTTGGGGG +
Preference number: 6 (lower is better)
Translates to: RCRRKASGSQTA*RPLESNRKIWG
Trigger: CCCCCAAATCTTCCTGTTACTCTCTAGTGGTCTCAAGGCTGTCTGGGAGCCTGAAGCTTTCCTTCTGCATCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182769.10