Pregenerated sensors for CASP16 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067882Ensembl transcript IDs: ENSMUST00000088673.5, ENSMUST00000182769.10
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS GCA 90 bp | AGGACCACAAGGGCACACCCCACAGCACCCCTCTGGACATCCAGCTaGTCCCGGGACAAATGCAGCTCCTTAAGGAGGCTCTGGACTGGG | + |
Preference number: 5 (lower is better) Translates to: RTTRAHPTAPLWTSS*SRDKCSSLRRLWTG Trigger: CCCAGTCCAGAGCCTCCTTAAGGAGCTGCATTTGTCCCGGGAGCAGCTGGATGTCCAGAGGGGTGCTGTGGGGTGTGCCCTTGTGGTCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS TCA 90 bp | AGAACATCTGCCTGGGTTGGGATGGCTCGGGGTGCTCTCAGCCAATaGCGGTACCATGGGAGAGCTCTTGACCCCACACCAGGGTCCCTG | + |
Preference number: 5 (lower is better) Translates to: RTSAWVGMARGALSQ*RYHGRALDPTPGSL Trigger: CAGGGACCCTGGTGTGGGGTCAAGAGCTCTCCCATGGTACCGTCATTGGCTGAGAGCACCCCGAGCCATCCCAACCCAGGCAGATGTTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000088673.5 ENSMUST00000182769.10 |
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CDS GCA 90 bp | CCCACAGCAGACCTGGAGCAGGAAGATCTTGGGGTGGCCATGCAGTaGCTGGCAGCAGCTCAGTTCCTGCACCAGCACTTCTGCCTGTAC | + |
Preference number: 5 (lower is better) Translates to: PTADLEQEDLGVAMQ*LAAAQFLHQHFCLY Trigger: GTACAGGCAGAAGTGCTGGTGCAGGAACTGAGCTGCTGCCAGGCACTGCATGGCCACCCCAAGATCTTCCTGCTCCAGGTCTGCTGTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088673.5 ENSMUST00000182769.10 |
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CDS CCA 90 bp | CAAGCTGCGGATCTCCAGGCAGGCTTTGCACAGCTCATCACTGTCTaGCCCCAGGACGTCCAGCTCACACACCCGCCTGTTGACCTCAGT | + |
Preference number: 5 (lower is better) Translates to: QAADLQAGFAQLITV*PQDVQLTHPPVDLS Trigger: ACTGAGGTCAACAGGCGGGTGTGTGAGCTGGACGTCCTGGGGCCAGACAGTGATGAGCTGTGCAAAGCCTGCCTGGAGATCCGCAGCTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088673.5 ENSMUST00000182769.10 |
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CDS TCA 90 bp | AGGGGAAGTGGTGAGGTTGCTCGTCCTATAAACAGAGCCGGCGCCTaGGCAAGCTGCGGATCTCCAGGCAGGCTTTGCACAGCTCATCAC | + |
Preference number: 5 (lower is better) Translates to: RGSGEVARPINRAGA*ASCGSPGRLCTAHH Trigger: GTGATGAGCTGTGCAAAGCCTGCCTGGAGATCCGCAGCTTGCTCAGGCGCCGGCTCTGTTTATAGGACGAGCAACCTCACCACTTCCCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS CCA 90 bp | CAGCAGACCTGGAGCAGGAAGATCTTGGGGTGGCCATGCAGTGCCTaGCAGCAGCTCAGTTCCTGCACCAGCACTTCTGCCTGTACTTCT | + |
Preference number: 5 (lower is better) Translates to: QQTWSRKILGWPCSA*QQLSSCTSTSACTS Trigger: AGAAGTACAGGCAGAAGTGCTGGTGCAGGAACTGAGCTGCTGCCAGGCACTGCATGGCCACCCCAAGATCTTCCTGCTCCAGGTCTGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088673.5 ENSMUST00000182769.10 |
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CDS TCA 90 bp | AGCCCTGGTTCCAGACAGGTCATATTGTGTGCTTGCTCTAGGGTCTaGCTCCAGCCCCCAGGGCTCCTCATCTCCCAAACACAGAGTCCC | + |
Preference number: 5 (lower is better) Translates to: SPGSRQVILCACSRV*LQPPGLLISQTQSP Trigger: GGGACTCTGTGTTTGGGAGATGAGGAGCCCTGGGGGCTGGAGTCAGACCCTAGAGCAAGCACACAATATGACCTGTCTGGAACCAGGGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS TCA 90 bp | CTCCCTGGAGTGGAGATAAGGTTGTCTGGAGCATCAGCATGGATCTaGAGAACATCTGCCTGGGTTGGGATGGCTCGGGGTGCTCTCAGC | + |
Preference number: 5 (lower is better) Translates to: LPGVEIRLSGASAWI*RTSAWVGMARGALS Trigger: GCTGAGAGCACCCCGAGCCATCCCAACCCAGGCAGATGTTCTTCAGATCCATGCTGATGCTCCAGACAACCTTATCTCCACTCCAGGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS CCA 90 bp | CAGCTGCTCCCGGGACAAATGCAGCTCCTTAAGGAGGCTCTGGACTaGGGCCTCTCTCTTCTCACAGTTTTCAAAGCCCAGAGCCTGGAA | + |
Preference number: 5 (lower is better) Translates to: QLLPGQMQLLKEALD*GLSLLTVFKAQSLE Trigger: TTCCAGGCTCTGGGCTTTGAAAACTGTGAGAAGAGAGAGGCCCCAGTCCAGAGCCTCCTTAAGGAGCTGCATTTGTCCCGGGAGCAGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS TCA 90 bp | TGCTGTGGCAGACACACCAGGGCTGCAGAGTACCAAGGCTGTCCTTaGACCCTGAACACTGTATTTTCCCTTTCTCCCCAAGCATCCGCC | + |
Preference number: 5 (lower is better) Translates to: CCGRHTRAAEYQGCP*TLNTVFSLSPQASA Trigger: GGCGGATGCTTGGGGAGAAAGGGAAAATACAGTGTTCAGGGTTCAAGGACAGCCTTGGTACTCTGCAGCCCTGGTGTGTCTGCCACAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS TCA 90 bp | AGGTTCCTCAATGCTGCCACATCATGCTGTGCTCCTAGTCGGTCTTaGATCACAGCCAGTAGGAGGGCAAGCCCTGGTTCCAGACAGGTC | + |
Preference number: 5 (lower is better) Translates to: RFLNAATSCCAPSRS*ITASRRASPGSRQV Trigger: GACCTGTCTGGAACCAGGGCTTGCCCTCCTACTGGCTGTGATTCAAGACCGACTAGGAGCACAGCATGATGTGGCAGCATTGAGGAACCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS GCA 90 bp | CTTCTCACAGTTTTCAAAGCCCAGAGCCTGGAACACACCAGCAACTaGTGTGGCAGACACACCAGGGCTGCAGAGTACCAAGGCTGTCCT | + |
Preference number: 5 (lower is better) Translates to: LLTVFKAQSLEHTSN*CGRHTRAAEYQGCP Trigger: AGGACAGCCTTGGTACTCTGCAGCCCTGGTGTGTCTGCCACAGCAGTTGCTGGTGTGTTCCAGGCTCTGGGCTTTGAAAACTGTGAGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS CCA 90 bp | CACCTGTGTGCCAAGCCCAGGCTCCAGAAGAAAAGCAGACCCACCTaGAGCATCAGCATGGATCTGAAGAACATCTGCCTGGGTTGGGAT | + |
Preference number: 5 (lower is better) Translates to: HLCAKPRLQKKSRPT*SISMDLKNICLGWD Trigger: ATCCCAACCCAGGCAGATGTTCTTCAGATCCATGCTGATGCTCCAGGTGGGTCTGCTTTTCTTCTGGAGCCTGGGCTTGGCACACAGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088673.5 |
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CDS GCA 90 bp | GAGCCTGGAACACACCAGCAACTGCTGTGGCAGACACACCAGGGCTaGAGAGTACCAAGGCTGTCCTTGAACCCTGAACACTGTATTTTC | + |
Preference number: 5 (lower is better) Translates to: EPGTHQQLLWQTHQG*RVPRLSLNPEHCIF Trigger: GAAAATACAGTGTTCAGGGTTCAAGGACAGCCTTGGTACTCTGCAGCCCTGGTGTGTCTGCCACAGCAGTTGCTGGTGTGTTCCAGGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS GCA 90 bp | AAGGGAGGTCCTAAAGACTGGGCAGTAGGTGTTCCCTGCAGACTCTaGAAAAGACCTCTGTCAGTAGCTGCAGCAGTGACCAGCGAGGAT | + |
Preference number: 5 (lower is better) Translates to: KGGPKDWAVGVPCRL*KRPLSVAAAVTSED Trigger: ATCCTCGCTGGTCACTGCTGCAGCTACTGACAGAGGTCTTTTGCAGAGTCTGCAGGGAACACCTACTGCCCAGTCTTTAGGACCTCCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS CCA 90 bp | CAAAGTCCGAGCCCTTTTCATCCCGATAAGCCACACAGCTGTGAATaGTTCCCAGCACCTGTGTGCCAAGCCCAGGCTCCAGAAGAAAAG | + |
Preference number: 5 (lower is better) Translates to: QSPSPFHPDKPHSCE*FPAPVCQAQAPEEK Trigger: CTTTTCTTCTGGAGCCTGGGCTTGGCACACAGGTGCTGGGAACCATTCACAGCTGTGTGGCTTATCGGGATGAAAAGGGCTCGGACTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088673.5 |
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CDS CCA 90 bp | CTCATCTCCCAAACACAGAGTCCCCCGAAGGGAGGTCCTAAAGACTaGGCAGTAGGTGTTCCCTGCAGACTCTGCAAAAGACCTCTGTCA | + |
Preference number: 5 (lower is better) Translates to: LISQTQSPPKGGPKD*AVGVPCRLCKRPLS Trigger: TGACAGAGGTCTTTTGCAGAGTCTGCAGGGAACACCTACTGCCCAGTCTTTAGGACCTCCCTTCGGGGGACTCTGTGTTTGGGAGATGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS CAA 72 bp | CGGCGCCTGAGCAAGCTGCGGATCTCCAGGCAGGCTTaGCACAGCTCATCACTGTCTGGCCCCAGGACGTCC | + |
Preference number: 6 (lower is better) Translates to: RRLSKLRISRQA*HSSSLSGPRTS Trigger: GGACGTCCTGGGGCCAGACAGTGATGAGCTGTGCAAAGCCTGCCTGGAGATCCGCAGCTTGCTCAGGCGCCG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088673.5 ENSMUST00000182769.10 |
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CDS CAA 90 bp | AAACAGAGCCGGCGCCTGAGCAAGCTGCGGATCTCCAGGCAGGCTTaGCACAGCTCATCACTGTCTGGCCCCAGGACGTCCAGCTCACAC | + |
Preference number: 6 (lower is better) Translates to: KQSRRLSKLRISRQA*HSSSLSGPRTSSSH Trigger: GTGTGAGCTGGACGTCCTGGGGCCAGACAGTGATGAGCTGTGCAAAGCCTGCCTGGAGATCCGCAGCTTGCTCAGGCGCCGGCTCTGTTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088673.5 ENSMUST00000182769.10 |
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CDS GCA 72 bp | GCACCCCTCTGGACATCCAGCTGCTCCCGGGACAAATaGAGCTCCTTAAGGAGGCTCTGGACTGGGGCCTCT | + |
Preference number: 6 (lower is better) Translates to: APLWTSSCSRDK*SSLRRLWTGAS Trigger: AGAGGCCCCAGTCCAGAGCCTCCTTAAGGAGCTGCATTTGTCCCGGGAGCAGCTGGATGTCCAGAGGGGTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS GCA 72 bp | AGGGCACACCCCACAGCACCCCTCTGGACATCCAGCTaGTCCCGGGACAAATGCAGCTCCTTAAGGAGGCTC | + |
Preference number: 6 (lower is better) Translates to: RAHPTAPLWTSS*SRDKCSSLRRL Trigger: GAGCCTCCTTAAGGAGCTGCATTTGTCCCGGGAGCAGCTGGATGTCCAGAGGGGTGCTGTGGGGTGTGCCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS GCA 72 bp | GACCTGGAGCAGGAAGATCTTGGGGTGGCCATGCAGTaGCTGGCAGCAGCTCAGTTCCTGCACCAGCACTTC | + |
Preference number: 6 (lower is better) Translates to: DLEQEDLGVAMQ*LAAAQFLHQHF Trigger: GAAGTGCTGGTGCAGGAACTGAGCTGCTGCCAGGCACTGCATGGCCACCCCAAGATCTTCCTGCTCCAGGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088673.5 ENSMUST00000182769.10 |
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CDS GCA 72 bp | CTCAGCTCCTTGACCAGCAGCTGTGGCTGCCTTAGCTaGCCACTGGGGACCATTAGGACCACAAGGGCACAC | + |
Preference number: 6 (lower is better) Translates to: LSSLTSSCGCLS*PLGTIRTTRAH Trigger: GTGTGCCCTTGTGGTCCTAATGGTCCCCAGTGGGCAGCTAAGGCAGCCACAGCTGCTGGTCAAGGAGCTGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS CCA 72 bp | TGGAGCAGGAAGATCTTGGGGTGGCCATGCAGTGCCTaGCAGCAGCTCAGTTCCTGCACCAGCACTTCTGCC | + |
Preference number: 6 (lower is better) Translates to: WSRKILGWPCSA*QQLSSCTSTSA Trigger: GGCAGAAGTGCTGGTGCAGGAACTGAGCTGCTGCCAGGCACTGCATGGCCACCCCAAGATCTTCCTGCTCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000088673.5 ENSMUST00000182769.10 |
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CDS TCA 72 bp | GGTGAGGTTGCTCGTCCTATAAACAGAGCCGGCGCCTaGGCAAGCTGCGGATCTCCAGGCAGGCTTTGCACA | + |
Preference number: 6 (lower is better) Translates to: GEVARPINRAGA*ASCGSPGRLCT Trigger: TGTGCAAAGCCTGCCTGGAGATCCGCAGCTTGCTCAGGCGCCGGCTCTGTTTATAGGACGAGCAACCTCACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS TCA 72 bp | CTCCCACGCCCAAACTGCTGCATCGATGACAGGGTGTaGAGAGGGGATGTAGGGGAAGTGGTGAGGTTGCTC | + |
Preference number: 6 (lower is better) Translates to: LPRPNCCIDDRV*RGDVGEVVRLL Trigger: GAGCAACCTCACCACTTCCCCTACATCCCCTCTTCACACCCTGTCATCGATGCAGCAGTTTGGGCGTGGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS TCA 72 bp | AGGCCTGAGCTGATGGGTTTATCCTCAGGGTGGCCTTaGAGCCCAAGGCCTGGCAAAGGTTCCTCAATGCTG | + |
Preference number: 6 (lower is better) Translates to: RPELMGLSSGWP*SPRPGKGSSML Trigger: CAGCATTGAGGAACCTTTGCCAGGCCTTGGGCTTCAAGGCCACCCTGAGGATAAACCCATCAGCTCAGGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS GCA 72 bp | ACACACCAGCAACTGCTGTGGCAGACACACCAGGGCTaGAGAGTACCAAGGCTGTCCTTGAACCCTGAACAC | + |
Preference number: 6 (lower is better) Translates to: THQQLLWQTHQG*RVPRLSLNPEH Trigger: GTGTTCAGGGTTCAAGGACAGCCTTGGTACTCTGCAGCCCTGGTGTGTCTGCCACAGCAGTTGCTGGTGTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS CCA 72 bp | AGCCCTTTTCATCCCGATAAGCCACACAGCTGTGAATaGTTCCCAGCACCTGTGTGCCAAGCCCAGGCTCCA | + |
Preference number: 6 (lower is better) Translates to: SPFHPDKPHSCE*FPAPVCQAQAP Trigger: TGGAGCCTGGGCTTGGCACACAGGTGCTGGGAACCATTCACAGCTGTGTGGCTTATCGGGATGAAAAGGGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088673.5 |
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CDS TCA 72 bp | AATGCTGCCACATCATGCTGTGCTCCTAGTCGGTCTTaGATCACAGCCAGTAGGAGGGCAAGCCCTGGTTCC | + |
Preference number: 6 (lower is better) Translates to: NAATSCCAPSRS*ITASRRASPGS Trigger: GGAACCAGGGCTTGCCCTCCTACTGGCTGTGATTCAAGACCGACTAGGAGCACAGCATGATGTGGCAGCATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS TCA 72 bp | GACAGCTGCAGAGACAGTAAGGATGTCTGCTTGGCCTaGGCTCCCTGGAGTGGAGATAAGGTTGTCTGGAGC | + |
Preference number: 6 (lower is better) Translates to: DSCRDSKDVCLA*APWSGDKVVWS Trigger: GCTCCAGACAACCTTATCTCCACTCCAGGGAGCTCAGGCCAAGCAGACATCCTTACTGTCTCTGCAGCTGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS GCA 72 bp | GTTTTCAAAGCCCAGAGCCTGGAACACACCAGCAACTaGTGTGGCAGACACACCAGGGCTGCAGAGTACCAA | + |
Preference number: 6 (lower is better) Translates to: VFKAQSLEHTSN*CGRHTRAAEYQ Trigger: TTGGTACTCTGCAGCCCTGGTGTGTCTGCCACAGCAGTTGCTGGTGTGTTCCAGGCTCTGGGCTTTGAAAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS CCA 72 bp | GCCAAGCCCAGGCTCCAGAAGAAAAGCAGACCCACCTaGAGCATCAGCATGGATCTGAAGAACATCTGCCTG | + |
Preference number: 6 (lower is better) Translates to: AKPRLQKKSRPT*SISMDLKNICL Trigger: CAGGCAGATGTTCTTCAGATCCATGCTGATGCTCCAGGTGGGTCTGCTTTTCTTCTGGAGCCTGGGCTTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088673.5 |
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CDS CCA 72 bp | GGGTTTATCCTCAGGGTGGCCTTGAAGCCCAAGGCCTaGCAAAGGTTCCTCAATGCTGCCACATCATGCTGT | + |
Preference number: 6 (lower is better) Translates to: GFILRVALKPKA*QRFLNAATSCC Trigger: ACAGCATGATGTGGCAGCATTGAGGAACCTTTGCCAGGCCTTGGGCTTCAAGGCCACCCTGAGGATAAACCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS CCA 72 bp | CCCTCGACAGCTGCAGAGACAGTAAGGATGTCTGCTTaGCCTGAGCTCCCTGGAGTGGAGATAAGGTTGTCT | + |
Preference number: 6 (lower is better) Translates to: PSTAAETVRMSA*PELPGVEIRLS Trigger: AGACAACCTTATCTCCACTCCAGGGAGCTCAGGCCAAGCAGACATCCTTACTGTCTCTGCAGCTGTCGAGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS TCA 72 bp | CCAGGGCTGCAGAGTACCAAGGCTGTCCTTGAACCCTaGACACTGTATTTTCCCTTTCTCCCCAAGCATCCG | + |
Preference number: 6 (lower is better) Translates to: PGLQSTKAVLEP*TLYFPFLPKHP Trigger: CGGATGCTTGGGGAGAAAGGGAAAATACAGTGTTCAGGGTTCAAGGACAGCCTTGGTACTCTGCAGCCCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS TCA 72 bp | TCTGTCAGTAGCTGCAGCAGTGACCAGCGAGGATGCTaGCTGCAGATTTCCCCCAGATGCAGAAGGAAAGCT | + |
Preference number: 6 (lower is better) Translates to: SVSSCSSDQRGC*LQISPRCRRKA Trigger: AGCTTTCCTTCTGCATCTGGGGGAAATCTGCAGTCAGCATCCTCGCTGGTCACTGCTGCAGCTACTGACAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS TCA 72 bp | GTGGAGATAAGGTTGTCTGGAGCATCAGCATGGATCTaGAGAACATCTGCCTGGGTTGGGATGGCTCGGGGT | + |
Preference number: 6 (lower is better) Translates to: VEIRLSGASAWI*RTSAWVGMARG Trigger: ACCCCGAGCCATCCCAACCCAGGCAGATGTTCTTCAGATCCATGCTGATGCTCCAGACAACCTTATCTCCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS GCA 72 bp | CCTAAAGACTGGGCAGTAGGTGTTCCCTGCAGACTCTaGAAAAGACCTCTGTCAGTAGCTGCAGCAGTGACC | + |
Preference number: 6 (lower is better) Translates to: PKDWAVGVPCRL*KRPLSVAAAVT Trigger: GGTCACTGCTGCAGCTACTGACAGAGGTCTTTTGCAGAGTCTGCAGGGAACACCTACTGCCCAGTCTTTAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS CCA 72 bp | TGCTCCCGGGACAAATGCAGCTCCTTAAGGAGGCTCTaGACTGGGGCCTCTCTCTTCTCACAGTTTTCAAAG | + |
Preference number: 6 (lower is better) Translates to: CSRDKCSSLRRL*TGASLFSQFSK Trigger: CTTTGAAAACTGTGAGAAGAGAGAGGCCCCAGTCCAGAGCCTCCTTAAGGAGCTGCATTTGTCCCGGGAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS CCA 72 bp | CAAACACAGAGTCCCCCGAAGGGAGGTCCTAAAGACTaGGCAGTAGGTGTTCCCTGCAGACTCTGCAAAAGA | + |
Preference number: 6 (lower is better) Translates to: QTQSPPKGGPKD*AVGVPCRLCKR Trigger: TCTTTTGCAGAGTCTGCAGGGAACACCTACTGCCCAGTCTTTAGGACCTCCCTTCGGGGGACTCTGTGTTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS TCA 72 bp | AGACACACCAGGGCTGCAGAGTACCAAGGCTGTCCTTaGACCCTGAACACTGTATTTTCCCTTTCTCCCCAA | + |
Preference number: 6 (lower is better) Translates to: RHTRAAEYQGCP*TLNTVFSLSPQ Trigger: TTGGGGAGAAAGGGAAAATACAGTGTTCAGGGTTCAAGGACAGCCTTGGTACTCTGCAGCCCTGGTGTGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |
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CDS CAA 72 bp | AGATGCAGAAGGAAAGCTTCAGGCTCCCAGACAGCCTaGAGACCACTAGAGAGTAACAGGAAGATTTGGGGG | + |
Preference number: 6 (lower is better) Translates to: RCRRKASGSQTA*RPLESNRKIWG Trigger: CCCCCAAATCTTCCTGTTACTCTCTAGTGGTCTCAAGGCTGTCTGGGAGCCTGAAGCTTTCCTTCTGCATCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182769.10 |