RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CASP14 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000005355

Ensembl transcript IDs: ENSMUST00000005488.9, ENSMUST00000219237.2

Found 104 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTTCAGAAAGCTACTACCTCTGAATTAGAAATGACTATTTTCGGTTaGGTCATAGGAGGGAGAGTAAGGCGTGGTGAGGCAAAAGAGCAA +
Preference number: 1 (lower is better)
Translates to: VQKATTSELEMTIFG*VIGGRVRRGEAKEQ
Trigger: TTGCTCTTTTGCCTCACCACGCCTTACTCTCCCTCCTATGACTCAACCGAAAATAGTCATTTCTAATTCAGAGGTAGTAGCTTTCTGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR TCA 90 bp TCACCAGAGATGTCAGGACCACTAACATGGCGTCTTCTTCCTTGGGACATGCCCGAGAGTAAGGCGTGGTaGGGCAAAAGAGCAAACAGT +
Preference number: 2 (lower is better)
Translates to: SPEMSGPLTWRLLPWDMPESKAW*GKRANS
Trigger: ACTGTTTGCTCTTTTGCCTCACCACGCCTTACTCTC...GGGCATGTCCCAAGGAAGAAGACGCCATGTTAGTGGTCCTGACATCTCTGGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR TCA 90 bp TCACCAGAGATGTCAGGACCACTAACATGGCGTCTTCTTCCTTGGGACATGCCCTCCAGTAACCATCTTTaGAGACTGGTGTCAACAGAG +
Preference number: 2 (lower is better)
Translates to: SPEMSGPLTWRLLPWDMPSSNHL*RLVSTE
Trigger: CTCTGTTGACACCAGTCTTCAAAGATGGTTACTGGA...GGGCATGTCCCAAGGAAGAAGACGCCATGTTAGTGGTCCTGACATCTCTGGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR GCA 90 bp AAGGGCACAGAGGCATGGGGAGAGGATGCTAACATTTCTGGGAGAATGAATTCACTGGAGGGGAAGGGCTaGTCAAGTCCTTTGGGTTTT +
Preference number: 2 (lower is better)
Translates to: KGTEAWGEDANISGRMNSLEGKG*SSPLGF
Trigger: AAAACCCAAAGGACTTGAGCAGCCCTTCCCCTCCAG...TGAATTCATTCTCCCAGAAATGTTAGCATCCTCTCCCCATGCCTCTGTGCCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR TCA 90 bp TCACCAGAGATGTCAGGACCACTAACATGGCGTCTTCTTCCTTGGGACATGCCCTTGTACTTCCTGCCTTaGCTTCTTCACAATGACGAA +
Preference number: 2 (lower is better)
Translates to: SPEMSGPLTWRLLPWDMPLYFLP*LLHNDE
Trigger: TTCGTCATTGTGAAGAAGTCAAGGCAGGAAGTACAA...GGGCATGTCCCAAGGAAGAAGACGCCATGTTAGTGGTCCTGACATCTCTGGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR GCA 90 bp ATACCAAGGAAGTGGGGTCACTGCTGTGATAGATTTGGCCATGTGACTTTTATGCTGGAGGGGAAGGGCTaGTCAAGTCCTTTGGGTTTT +
Preference number: 2 (lower is better)
Translates to: IPRKWGHCCDRFGHVTFMLEGKG*SSPLGF
Trigger: AAAACCCAAAGGACTTGAGCAGCCCTTCCCCTCCAG...CATAAAAGTCACATGGCCAAATCTATCACAGCAGTGACCCCACTTCCTTGGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR CCA 90 bp ATACCAAGGAAGTGGGGTCACTGCTGTGATAGATTTGGCCATGTGACTTTTATGTGTGCTCTAGCTGGCTaGCTTGCCCTGAAACTGACA +
Preference number: 2 (lower is better)
Translates to: IPRKWGHCCDRFGHVTFMCALAG*LALKLT
Trigger: TGTCAGTTTCAGGGCAAGCCAGCCAGCTAGAGCACA...CATAAAAGTCACATGGCCAAATCTATCACAGCAGTGACCCCACTTCCTTGGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR TCA 90 bp AAGGGCACAGAGGCATGGGGAGAGGATGCTAACATTTCTGGGAGAATGAATTCATCCAGTAACCATCTTTaGAGACTGGTGTCAACAGAG +
Preference number: 2 (lower is better)
Translates to: KGTEAWGEDANISGRMNSSSNHL*RLVSTE
Trigger: CTCTGTTGACACCAGTCTTCAAAGATGGTTACTGGA...TGAATTCATTCTCCCAGAAATGTTAGCATCCTCTCCCCATGCCTCTGTGCCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR GCA 90 bp AAGGGCACAGAGGCATGGGGAGAGGATGCTAACATTTCTGGGAGAATGAATTCAGGTGTGACTGTTTCATaGTCCAGTTCTTTGATTTTG +
Preference number: 2 (lower is better)
Translates to: KGTEAWGEDANISGRMNSGVTVS*SSSLIL
Trigger: CAAAATCAAAGAACTGGAGCATGAAACAGTCACACC...TGAATTCATTCTCCCAGAAATGTTAGCATCCTCTCCCCATGCCTCTGTGCCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR TCA 90 bp ATACCAAGGAAGTGGGGTCACTGCTGTGATAGATTTGGCCATGTGACTTTTATGTTGTACTTCCTGCCTTaGCTTCTTCACAATGACGAA +
Preference number: 2 (lower is better)
Translates to: IPRKWGHCCDRFGHVTFMLYFLP*LLHNDE
Trigger: TTCGTCATTGTGAAGAAGTCAAGGCAGGAAGTACAA...CATAAAAGTCACATGGCCAAATCTATCACAGCAGTGACCCCACTTCCTTGGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR CCA 90 bp AAGAATATTTATTCTGTGATGTCACTCATGGTTGTACTTCCTGCCTTGACTTCTTGTGCTCTAGCTGGCTaGCTTGCCCTGAAACTGACA +
Preference number: 2 (lower is better)
Translates to: KNIYSVMSLMVVLPALTSCALAG*LALKLT
Trigger: TGTCAGTTTCAGGGCAAGCCAGCCAGCTAGAGCACA...AGAAGTCAAGGCAGGAAGTACAACCATGAGTGACATCACAGAATAAATATTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR CCA 90 bp CACTGCTGTGATAGATTTGGCCATGTGACTTTTATGATTTGGACATGTTTTTGTGATAAGGCTAGTAGCTaGAGGGGAAGGGCTGCTCAA +
Preference number: 2 (lower is better)
Translates to: HCCDRFGHVTFMIWTCFCDKASS*RGRAAQ
Trigger: TTGAGCAGCCCTTCCCCTCCAGCTACTAGCCTTATC...ACAAAAACATGTCCAAATCATAAAAGTCACATGGCCAAATCTATCACAGCAGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR TCA 90 bp CACTGCTGTGATAGATTTGGCCATGTGACTTTTATGATTTGGACATGTTTTTGTGAGAGTAAGGCGTGGTaGGGCAAAAGAGCAAACAGT +
Preference number: 2 (lower is better)
Translates to: HCCDRFGHVTFMIWTCFCESKAW*GKRANS
Trigger: ACTGTTTGCTCTTTTGCCTCACCACGCCTTACTCTC...ACAAAAACATGTCCAAATCATAAAAGTCACATGGCCAAATCTATCACAGCAGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR GCA 90 bp ATACCAAGGAAGTGGGGTCACTGCTGTGATAGATTTGGCCATGTGACTTTTATGGGTGTGACTGTTTCATaGTCCAGTTCTTTGATTTTG +
Preference number: 2 (lower is better)
Translates to: IPRKWGHCCDRFGHVTFMGVTVS*SSSLIL
Trigger: CAAAATCAAAGAACTGGAGCATGAAACAGTCACACC...CATAAAAGTCACATGGCCAAATCTATCACAGCAGTGACCCCACTTCCTTGGTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR CAA 90 bp CAATTAAAAGTATACATAGATATTTCGACTAAGAGTGCGTGTGTGTaGGTCATGCTTGGTCTGAAGATGCTGCTGAGATCACCAGAGATG +
Preference number: 2 (lower is better)
Translates to: QLKVYIDISTKSACV*VMLGLKMLLRSPEM
Trigger: CATCTCTGGTGATCTCAGCAGCATCTTCAGACCAAGCATGACCAACACACACGCACTCTTAGTCGAAATATCTATGTATACTTTTAATTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR CCA 90 bp CACTGCTGTGATAGATTTGGCCATGTGACTTTTATGATTTGGACATGTTTTTGTTGTGTTGGTCATGCTTaGTCTGAAGATGCTGCTGAG +
Preference number: 2 (lower is better)
Translates to: HCCDRFGHVTFMIWTCFCCVGHA*SEDAAE
Trigger: CTCAGCAGCATCTTCAGACCAAGCATGACCAACACA...ACAAAAACATGTCCAAATCATAAAAGTCACATGGCCAAATCTATCACAGCAGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR TCA 90 bp CACTGCTGTGATAGATTTGGCCATGTGACTTTTATGATTTGGACATGTTTTTGTATGACTATTTTCGGTTaGGTCATAGGAGGGAGAGTA +
Preference number: 2 (lower is better)
Translates to: HCCDRFGHVTFMIWTCFCMTIFG*VIGGRV
Trigger: TACTCTCCCTCCTATGACTCAACCGAAAATAGTCAT...ACAAAAACATGTCCAAATCATAAAAGTCACATGGCCAAATCTATCACAGCAGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR CCA 90 bp CACTGCTGTGATAGATTTGGCCATGTGACTTTTATGATTTGGACATGTTTTTGTTTAGCTGGAGGTTATTaGAAGTTTCTAGAAATGGTT +
Preference number: 2 (lower is better)
Translates to: HCCDRFGHVTFMIWTCFCLAGGY*KFLEMV
Trigger: AACCATTTCTAGAAACTTCCAATAACCTCCAGCTAA...ACAAAAACATGTCCAAATCATAAAAGTCACATGGCCAAATCTATCACAGCAGTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR CCA 90 bp AAGAATATTTATTCTGTGATGTCACTCATGGTTGTACTTCCTGCCTTGACTTCTTTAGCTGGAGGTTATTaGAAGTTTCTAGAAATGGTT +
Preference number: 2 (lower is better)
Translates to: KNIYSVMSLMVVLPALTSLAGGY*KFLEMV
Trigger: AACCATTTCTAGAAACTTCCAATAACCTCCAGCTAA...AGAAGTCAAGGCAGGAAGTACAACCATGAGTGACATCACAGAATAAATATTCTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR CCA 72 bp GGAGGCATGGCATCTTCTTCCTTGGGACGCACCCTTTaGGATAAGGCTAGTAGCTGGAGGGGAAGGGCTGCT +
Preference number: 3 (lower is better)
Translates to: GGMASSSLGRTL*DKASSWRGRAA
Trigger: AGCAGCCCTTCCCCTCCAGCTACTAGCCTTATCCCAAAGGGTGCGTCCCAAGGAAGAAGATGCCATGCCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR CCA 72 bp TCCTTGGGACGCACCCTTTGGGATAAGGCTAGTAGCTaGAGGGGAAGGGCTGCTCAAGTCCTTTGGGTTTTT +
Preference number: 3 (lower is better)
Translates to: SLGRTLWDKASS*RGRAAQVLWVF
Trigger: AAAAACCCAAAGGACTTGAGCAGCCCTTCCCCTCCAGCTACTAGCCTTATCCCAAAGGGTGCGTCCCAAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR CCA 72 bp CCATGTGGGACACCTAAGCTTAGAGAACTGGTCAATTaGGCAAGGGCACAGAGGCATGGGGAGAGGATGCTA +
Preference number: 3 (lower is better)
Translates to: PCGTPKLRELVN*ARAQRHGERML
Trigger: TAGCATCCTCTCCCCATGCCTCTGTGCCCTTGCCCAATTGACCAGTTCTCTAAGCTTAGGTGTCCCACATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR CCA 72 bp CTGCTGAGATCACCAGAGATGTCAGGACCACTAACATaGCGTCTTCTTCCTTGGGACATGCCCTTTGGGATA +
Preference number: 3 (lower is better)
Translates to: LLRSPEMSGPLT*RLLPWDMPFGI
Trigger: TATCCCAAAGGGCATGTCCCAAGGAAGAAGACGCCATGTTAGTGGTCCTGACATCTCTGGTGATCTCAGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR CAA 90 bp TCACCAGAGATGTCAGGACCACTAACATGGCGTCTTCTTCCTTGGGACATGCCCCTTAGCTGGAGGTTATaGGAAGTTTCTAGAAATGGT +
Preference number: 3 (lower is better)
Translates to: SPEMSGPLTWRLLPWDMPLSWRL*EVSRNG
Trigger: ACCATTTCTAGAAACTTCCAATAACCTCCAGCTAAG...GGGCATGTCCCAAGGAAGAAGACGCCATGTTAGTGGTCCTGACATCTCTGGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR CAA 90 bp AAGGGCACAGAGGCATGGGGAGAGGATGCTAACATTTCTGGGAGAATGAATTCACTAGCTCATGGGGTTTaGGAGAGGAATAAAGAGTCT +
Preference number: 3 (lower is better)
Translates to: KGTEAWGEDANISGRMNSLAHGV*ERNKES
Trigger: AGACTCTTTATTCCTCTCCAAAACCCCATGAGCTAG...TGAATTCATTCTCCCAGAAATGTTAGCATCCTCTCCCCATGCCTCTGTGCCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR TCA 72 bp GCTACTACCTCTGAATTAGAAATGACTATTTTCGGTTaGGTCATAGGAGGGAGAGTAAGGCGTGGTGAGGCA +
Preference number: 3 (lower is better)
Translates to: ATTSELEMTIFG*VIGGRVRRGEA
Trigger: TGCCTCACCACGCCTTACTCTCCCTCCTATGACTCAACCGAAAATAGTCATTTCTAATTCAGAGGTAGTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR CCA 72 bp AAAAACCCCACAGTGGCGATCTTAGCTGGAGGTTATTaGAAGTTTCTAGAAATGGTTCAGAAAGCTACTACC +
Preference number: 3 (lower is better)
Translates to: KNPTVAILAGGY*KFLEMVQKATT
Trigger: GGTAGTAGCTTTCTGAACCATTTCTAGAAACTTCCAATAACCTCCAGCTAAGATCGCCACTGTGGGGTTTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR CAA 90 bp CACTGCTGTGATAGATTTGGCCATGTGACTTTTATGATTTGGACATGTTTTTGTCTAGCTCATGGGGTTTaGGAGAGGAATAAAGAGTCT +
Preference number: 3 (lower is better)
Translates to: HCCDRFGHVTFMIWTCFCLAHGV*ERNKES
Trigger: AGACTCTTTATTCCTCTCCAAAACCCCATGAGCTAG...ACAAAAACATGTCCAAATCATAAAAGTCACATGGCCAAATCTATCACAGCAGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR-3UTR CAA 90 bp CACTGCTGTGATAGATTTGGCCATGTGACTTTTATGATTTGGACATGTTTTTGTCTTAGCTGGAGGTTATaGGAAGTTTCTAGAAATGGT +
Preference number: 3 (lower is better)
Translates to: HCCDRFGHVTFMIWTCFCLSWRL*EVSRNG
Trigger: ACCATTTCTAGAAACTTCCAATAACCTCCAGCTAAG...ACAAAAACATGTCCAAATCATAAAAGTCACATGGCCAAATCTATCACAGCAGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR TCA 72 bp GAAGTTTCTAGAAATGGTTCAGAAAGCTACTACCTCTaGATTAGAAATGACTATTTTCGGTTGAGTCATAGG +
Preference number: 3 (lower is better)
Translates to: EVSRNGSESYYL*IRNDYFRLSHR
Trigger: CCTATGACTCAACCGAAAATAGTCATTTCTAATTCAGAGGTAGTAGCTTTCTGAACCATTTCTAGAAACTTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR TCA 90 bp TCACCAGAGATGTCAGGACCACTAACATGGCGTCTTCTTCCTTGGGACATGCCCCCTCCCGGGCTTTGGTaGCACACAGCGTCAGGGCCA +
Preference number: 4 (lower is better)
Translates to: SPEMSGPLTWRLLPWDMPPPGLW*HTASGP
Trigger: TGGCCCTGACGCTGTGTGTCACCAAAGCCCGGGAGG...GGGCATGTCCCAAGGAAGAAGACGCCATGTTAGTGGTCCTGACATCTCTGGTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR TCA 90 bp GACGCACCCTTTGGGATAAGGCTAGTAGCTGGAGGGGAAGGGCTGCTCAAGTCCGGCCAGGCGGGCACCTaGCATATCATATCTTTCCTC +
Preference number: 4 (lower is better)
Translates to: DAPFGIRLVAGGEGLLKSGQAGT*HIISFL
Trigger: GAGGAAAGATATGATATGTCAGGTGCCCGCCTGGCC...GGACTTGAGCAGCCCTTCCCCTCCAGCTACTAGCCTTATCCCAAAGGGTGCGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR TCA 90 bp TCACCAGAGATGTCAGGACCACTAACATGGCGTCTTCTTCCTTGGGACATGCCCCCTCACCATGTGCCATaGGTACCACAAAGGCACAGC +
Preference number: 4 (lower is better)
Translates to: SPEMSGPLTWRLLPWDMPPHHVP*VPQRHS
Trigger: GCTGTGCCTTTGTGGTACTCATGGCACATGGTGAGG...GGGCATGTCCCAAGGAAGAAGACGCCATGTTAGTGGTCCTGACATCTCTGGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR GCA 90 bp GACGCACCCTTTGGGATAAGGCTAGTAGCTGGAGGGGAAGGGCTGCTCAAGTCCTGCCTCTCAGGGCCTTaGAGTTCTTGTTGTTCAAGA +
Preference number: 4 (lower is better)
Translates to: DAPFGIRLVAGGEGLLKSCLSGP*SSCCSR
Trigger: TCTTGAACAACAAGAACTGCAAGGCCCTGAGAGGCA...GGACTTGAGCAGCCCTTCCCCTCCAGCTACTAGCCTTATCCCAAAGGGTGCGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR TCA 90 bp ATACCAAGGAAGTGGGGTCACTGCTGTGATAGATTTGGCCATGTGACTTTTATGCCTCCCGGGCTTTGGTaGCACACAGCGTCAGGGCCA +
Preference number: 4 (lower is better)
Translates to: IPRKWGHCCDRFGHVTFMPPGLW*HTASGP
Trigger: TGGCCCTGACGCTGTGTGTCACCAAAGCCCGGGAGG...CATAAAAGTCACATGGCCAAATCTATCACAGCAGTGACCCCACTTCCTTGGTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR TCA 90 bp TCACCAGAGATGTCAGGACCACTAACATGGCGTCTTCTTCCTTGGGACATGCCCTCTCATCTTCTCCCTTaGGGAGGCCTTCCTCACCAT +
Preference number: 4 (lower is better)
Translates to: SPEMSGPLTWRLLPWDMPSHLLP*GGLPHH
Trigger: ATGGTGAGGAAGGCCTCCTCAAGGGAGAAGATGAGA...GGGCATGTCCCAAGGAAGAAGACGCCATGTTAGTGGTCCTGACATCTCTGGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CCA 90 bp TCACCAGAGATGTCAGGACCACTAACATGGCGTCTTCTTCCTTGGGACATGCCCTCTCCTCTACAAGCCTaGATGATGTACACCTTTGGC +
Preference number: 4 (lower is better)
Translates to: SPEMSGPLTWRLLPWDMPSPLQA*MMYTFG
Trigger: GCCAAAGGTGTACATCATCCAGGCTTGTAGAGGAGA...GGGCATGTCCCAAGGAAGAAGACGCCATGTTAGTGGTCCTGACATCTCTGGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
3UTR CAA 72 bp AGAGATGTCAGGACCACTAACATGGCGTCTTCTTCCTaGGGACATGCCCTTTGGGATAAGGCTAGTAGCTGG +
Preference number: 4 (lower is better)
Translates to: RDVRTTNMASSS*GHALWDKASSW
Trigger: CCAGCTACTAGCCTTATCCCAAAGGGCATGTCCCAAGGAAGAAGACGCCATGTTAGTGGTCCTGACATCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR GCA 90 bp AAGGGCACAGAGGCATGGGGAGAGGATGCTAACATTTCTGGGAGAATGAATTCATGTACACCTTTGGCTTaGCTCTCAGGGCCTTGCAGT +
Preference number: 4 (lower is better)
Translates to: KGTEAWGEDANISGRMNSCTPLA*LSGPCS
Trigger: ACTGCAAGGCCCTGAGAGGCAAGCCAAAGGTGTACA...TGAATTCATTCTCCCAGAAATGTTAGCATCCTCTCCCCATGCCTCTGTGCCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR TCA 90 bp ATACCAAGGAAGTGGGGTCACTGCTGTGATAGATTTGGCCATGTGACTTTTATGCCTCACCATGTGCCATaGGTACCACAAAGGCACAGC +
Preference number: 4 (lower is better)
Translates to: IPRKWGHCCDRFGHVTFMPHHVP*VPQRHS
Trigger: GCTGTGCCTTTGTGGTACTCATGGCACATGGTGAGG...CATAAAAGTCACATGGCCAAATCTATCACAGCAGTGACCCCACTTCCTTGGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CCA 90 bp ATACCAAGGAAGTGGGGTCACTGCTGTGATAGATTTGGCCATGTGACTTTTATGGAAATTGCTGGGCGGTaGGATCCCTCTTCATGGTGC +
Preference number: 4 (lower is better)
Translates to: IPRKWGHCCDRFGHVTFMEIAGR*DPSSWC
Trigger: GCACCATGAAGAGGGATCCCACCGCCCAGCAATTTC...CATAAAAGTCACATGGCCAAATCTATCACAGCAGTGACCCCACTTCCTTGGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CCA 90 bp AAGGGCACAGAGGCATGGGGAGAGGATGCTAACATTTCTGGGAGAATGAATTCAGATGATGTACACCTTTaGCTTGCCTCTCAGGGCCTT +
Preference number: 4 (lower is better)
Translates to: KGTEAWGEDANISGRMNSDDVHL*LASQGL
Trigger: AAGGCCCTGAGAGGCAAGCCAAAGGTGTACATCATC...TGAATTCATTCTCCCAGAAATGTTAGCATCCTCTCCCCATGCCTCTGTGCCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CCA 90 bp AAGGGCACAGAGGCATGGGGAGAGGATGCTAACATTTCTGGGAGAATGAATTCATTCCGGAGGGTGCTTTaGACTTCAGGGTTCACTTTC +
Preference number: 4 (lower is better)
Translates to: KGTEAWGEDANISGRMNSFRRVL*TSGFTF
Trigger: GAAAGTGAACCCTGAAGTCCAAAGCACCCTCCGGAA...TGAATTCATTCTCCCAGAAATGTTAGCATCCTCTCCCCATGCCTCTGTGCCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR GCA 90 bp ATACCAAGGAAGTGGGGTCACTGCTGTGATAGATTTGGCCATGTGACTTTTATGAACTCTTCCAGAAATTaGTGGGCGGTGGGATCCCTC +
Preference number: 4 (lower is better)
Translates to: IPRKWGHCCDRFGHVTFMNSSRN*WAVGSL
Trigger: GAGGGATCCCACCGCCCAGCAATTTCTGGAAGAGTT...CATAAAAGTCACATGGCCAAATCTATCACAGCAGTGACCCCACTTCCTTGGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR GCA 90 bp ATACCAAGGAAGTGGGGTCACTGCTGTGATAGATTTGGCCATGTGACTTTTATGGCTTCTTCCGGAGGGTaGTTTGGACTTCAGGGTTCA +
Preference number: 4 (lower is better)
Translates to: IPRKWGHCCDRFGHVTFMASSGG*FGLQGS
Trigger: TGAACCCTGAAGTCCAAAGCACCCTCCGGAAGAAGC...CATAAAAGTCACATGGCCAAATCTATCACAGCAGTGACCCCACTTCCTTGGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CCA 90 bp ATACCAAGGAAGTGGGGTCACTGCTGTGATAGATTTGGCCATGTGACTTTTATGGGTACCCCTCTACCGTaGAGTAGATGTGGAGGGTAT +
Preference number: 4 (lower is better)
Translates to: IPRKWGHCCDRFGHVTFMGTPLP*SRCGGY
Trigger: ATACCCTCCACATCTACTCCACGGTAGAGGGGTACC...CATAAAAGTCACATGGCCAAATCTATCACAGCAGTGACCCCACTTCCTTGGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR GCA 90 bp ATACCAAGGAAGTGGGGTCACTGCTGTGATAGATTTGGCCATGTGACTTTTATGCTTGGTTTTCCTTCCTaGATCACCTCCGTGTTTGCC +
Preference number: 4 (lower is better)
Translates to: IPRKWGHCCDRFGHVTFMLGFPS*ITSVFA
Trigger: GGCAAACACGGAGGTGATGCAGGAAGGAAAACCAAG...CATAAAAGTCACATGGCCAAATCTATCACAGCAGTGACCCCACTTCCTTGGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR TCA 90 bp AAGGGCACAGAGGCATGGGGAGAGGATGCTAACATTTCTGGGAGAATGAATTCAAAAGGTCTTCTAGTCTaGCCATCTTCTCATCTTCTC +
Preference number: 4 (lower is better)
Translates to: KGTEAWGEDANISGRMNSKGLLV*PSSHLL
Trigger: GAGAAGATGAGAAGATGGTCAGACTAGAAGACCTTT...TGAATTCATTCTCCCAGAAATGTTAGCATCCTCTCCCCATGCCTCTGTGCCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR TCA 90 bp CACTGCTGTGATAGATTTGGCCATGTGACTTTTATGATTTGGACATGTTTTTGTGGCCAGGCGGGCACCTaGCATATCATATCTTTCCTC +
Preference number: 4 (lower is better)
Translates to: HCCDRFGHVTFMIWTCFCGQAGT*HIISFL
Trigger: GAGGAAAGATATGATATGTCAGGTGCCCGCCTGGCC...ACAAAAACATGTCCAAATCATAAAAGTCACATGGCCAAATCTATCACAGCAGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR TCA 90 bp GAAGAAGAATATTTATTCTGTGATGTCACTCATGGTTGTACTTCCTGCCTTGACTCTCATCTTCTCCCTTaGGGAGGCCTTCCTCACCAT +
Preference number: 4 (lower is better)
Translates to: EEEYLFCDVTHGCTSCLDSHLLP*GGLPHH
Trigger: ATGGTGAGGAAGGCCTCCTCAAGGGAGAAGATGAGA...GTCAAGGCAGGAAGTACAACCATGAGTGACATCACAGAATAAATATTCTTCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR GCA 90 bp AAGGGCACAGAGGCATGGGGAGAGGATGCTAACATTTCTGGGAGAATGAATTCAGATCCCTCTTCATGGTaGTTTCAAATTTCAGGTAAC +
Preference number: 4 (lower is better)
Translates to: KGTEAWGEDANISGRMNSDPSSW*FQISGN
Trigger: GTTACCTGAAATTTGAAAGCACCATGAAGAGGGATC...TGAATTCATTCTCCCAGAAATGTTAGCATCCTCTCCCCATGCCTCTGTGCCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CCA 90 bp AAGAATATTTATTCTGTGATGTCACTCATGGTTGTACTTCCTGCCTTGACTTCTGAAATTGCTGGGCGGTaGGATCCCTCTTCATGGTGC +
Preference number: 4 (lower is better)
Translates to: KNIYSVMSLMVVLPALTSEIAGR*DPSSWC
Trigger: GCACCATGAAGAGGGATCCCACCGCCCAGCAATTTC...AGAAGTCAAGGCAGGAAGTACAACCATGAGTGACATCACAGAATAAATATTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CCA 90 bp GAAGAAGAATATTTATTCTGTGATGTCACTCATGGTTGTACTTCCTGCCTTGACACATCCGTCAGGGTCTaGATGAAGCCAGAGCCTTTC +
Preference number: 4 (lower is better)
Translates to: EEEYLFCDVTHGCTSCLDTSVRV*MKPEPF
Trigger: GAAAGGCTCTGGCTTCATCCAGACCCTGACGGATGT...GTCAAGGCAGGAAGTACAACCATGAGTGACATCACAGAATAAATATTCTTCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR TCA 90 bp ATACCAAGGAAGTGGGGTCACTGCTGTGATAGATTTGGCCATGTGACTTTTATGAAAGGTCTTCTAGTCTaGCCATCTTCTCATCTTCTC +
Preference number: 4 (lower is better)
Translates to: IPRKWGHCCDRFGHVTFMKGLLV*PSSHLL
Trigger: GAGAAGATGAGAAGATGGTCAGACTAGAAGACCTTT...CATAAAAGTCACATGGCCAAATCTATCACAGCAGTGACCCCACTTCCTTGGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR GCA 90 bp CACTGCTGTGATAGATTTGGCCATGTGACTTTTATGATTTGGACATGTTTTTGTAACTCTTCCAGAAATTaGTGGGCGGTGGGATCCCTC +
Preference number: 4 (lower is better)
Translates to: HCCDRFGHVTFMIWTCFCNSSRN*WAVGSL
Trigger: GAGGGATCCCACCGCCCAGCAATTTCTGGAAGAGTT...ACAAAAACATGTCCAAATCATAAAAGTCACATGGCCAAATCTATCACAGCAGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR GCA 90 bp CACTGCTGTGATAGATTTGGCCATGTGACTTTTATGATTTGGACATGTTTTTGTGCCTTCCTCACCATGTaGCATGAGTACCACAAAGGC +
Preference number: 4 (lower is better)
Translates to: HCCDRFGHVTFMIWTCFCAFLTM*HEYHKG
Trigger: GCCTTTGTGGTACTCATGGCACATGGTGAGGAAGGC...ACAAAAACATGTCCAAATCATAAAAGTCACATGGCCAAATCTATCACAGCAGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR GCA 90 bp AAGAATATTTATTCTGTGATGTCACTCATGGTTGTACTTCCTGCCTTGACTTCTTGTACACCTTTGGCTTaGCTCTCAGGGCCTTGCAGT +
Preference number: 4 (lower is better)
Translates to: KNIYSVMSLMVVLPALTSCTPLA*LSGPCS
Trigger: ACTGCAAGGCCCTGAGAGGCAAGCCAAAGGTGTACA...AGAAGTCAAGGCAGGAAGTACAACCATGAGTGACATCACAGAATAAATATTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR GCA 90 bp AAGAATATTTATTCTGTGATGTCACTCATGGTTGTACTTCCTGCCTTGACTTCTGCTTCTTCCGGAGGGTaGTTTGGACTTCAGGGTTCA +
Preference number: 4 (lower is better)
Translates to: KNIYSVMSLMVVLPALTSASSGG*FGLQGS
Trigger: TGAACCCTGAAGTCCAAAGCACCCTCCGGAAGAAGC...AGAAGTCAAGGCAGGAAGTACAACCATGAGTGACATCACAGAATAAATATTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CCA 90 bp AAGAATATTTATTCTGTGATGTCACTCATGGTTGTACTTCCTGCCTTGACTTCTGGTACCCCTCTACCGTaGAGTAGATGTGGAGGGTAT +
Preference number: 4 (lower is better)
Translates to: KNIYSVMSLMVVLPALTSGTPLP*SRCGGY
Trigger: ATACCCTCCACATCTACTCCACGGTAGAGGGGTACC...AGAAGTCAAGGCAGGAAGTACAACCATGAGTGACATCACAGAATAAATATTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR TCA 90 bp AAGAATATTTATTCTGTGATGTCACTCATGGTTGTACTTCCTGCCTTGACTTCTCCACAAAGGCACAGCTaGCAGGCTCTTCCCAATTAT +
Preference number: 4 (lower is better)
Translates to: KNIYSVMSLMVVLPALTSPQRHS*QALPNY
Trigger: ATAATTGGGAAGAGCCTGTCAGCTGTGCCTTTGTGG...AGAAGTCAAGGCAGGAAGTACAACCATGAGTGACATCACAGAATAAATATTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR GCA 90 bp GAAGAAGAATATTTATTCTGTGATGTCACTCATGGTTGTACTTCCTGCCTTGACTGCCTCTCAGGGCCTTaGAGTTCTTGTTGTTCAAGA +
Preference number: 4 (lower is better)
Translates to: EEEYLFCDVTHGCTSCLDCLSGP*SSCCSR
Trigger: TCTTGAACAACAAGAACTGCAAGGCCCTGAGAGGCA...GTCAAGGCAGGAAGTACAACCATGAGTGACATCACAGAATAAATATTCTTCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR GCA 90 bp CACTGCTGTGATAGATTTGGCCATGTGACTTTTATGATTTGGACATGTTTTTGTCTTGGTTTTCCTTCCTaGATCACCTCCGTGTTTGCC +
Preference number: 4 (lower is better)
Translates to: HCCDRFGHVTFMIWTCFCLGFPS*ITSVFA
Trigger: GGCAAACACGGAGGTGATGCAGGAAGGAAAACCAAG...ACAAAAACATGTCCAAATCATAAAAGTCACATGGCCAAATCTATCACAGCAGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CCA 90 bp CACTGCTGTGATAGATTTGGCCATGTGACTTTTATGATTTGGACATGTTTTTGTGATGATGTACACCTTTaGCTTGCCTCTCAGGGCCTT +
Preference number: 4 (lower is better)
Translates to: HCCDRFGHVTFMIWTCFCDDVHL*LASQGL
Trigger: AAGGCCCTGAGAGGCAAGCCAAAGGTGTACATCATC...ACAAAAACATGTCCAAATCATAAAAGTCACATGGCCAAATCTATCACAGCAGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CCA 90 bp AAGAATATTTATTCTGTGATGTCACTCATGGTTGTACTTCCTGCCTTGACTTCTTTCCGGAGGGTGCTTTaGACTTCAGGGTTCACTTTC +
Preference number: 4 (lower is better)
Translates to: KNIYSVMSLMVVLPALTSFRRVL*TSGFTF
Trigger: GAAAGTGAACCCTGAAGTCCAAAGCACCCTCCGGAA...AGAAGTCAAGGCAGGAAGTACAACCATGAGTGACATCACAGAATAAATATTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR GCA 90 bp AAGAATATTTATTCTGTGATGTCACTCATGGTTGTACTTCCTGCCTTGACTTCTGATCCCTCTTCATGGTaGTTTCAAATTTCAGGTAAC +
Preference number: 4 (lower is better)
Translates to: KNIYSVMSLMVVLPALTSDPSSW*FQISGN
Trigger: GTTACCTGAAATTTGAAAGCACCATGAAGAGGGATC...AGAAGTCAAGGCAGGAAGTACAACCATGAGTGACATCACAGAATAAATATTCTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS TCA 90 bp GTTCCAGGGCCTCCATGTCTACCTCGGAACCCTCCCGGGCTTTGGTaGCACACAGCGTCAGGGCCAGGCGGGCACCTGACATATCATATC +
Preference number: 5 (lower is better)
Translates to: VPGPPCLPRNPPGLW*HTASGPGGHLTYHI
Trigger: GATATGATATGTCAGGTGCCCGCCTGGCCCTGACGCTGTGTGTCACCAAAGCCCGGGAGGGTTCCGAGGTAGACATGGAGGCCCTGGAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS CCA 90 bp CCACGTAGTTCCTCACCGGGGTCTCTGTGCTCTCCTCTACAAGCCTaGATGATGTACACCTTTGGCTTGCCTCTCAGGGCCTTGCAGTTC +
Preference number: 5 (lower is better)
Translates to: PRSSSPGSLCSPLQA*MMYTFGLPLRALQF
Trigger: GAACTGCAAGGCCCTGAGAGGCAAGCCAAAGGTGTACATCATCCAGGCTTGTAGAGGAGAGCACAGAGACCCCGGTGAGGAACTACGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CAA 90 bp GACGCACCCTTTGGGATAAGGCTAGTAGCTGGAGGGGAAGGGCTGCTCAAGTCCCTTCCGGAGGGTGCTTaGGACTTCAGGGTTCACTTT +
Preference number: 5 (lower is better)
Translates to: DAPFGIRLVAGGEGLLKSLPEGA*DFRVHF
Trigger: AAAGTGAACCCTGAAGTCCAAAGCACCCTCCGGAAG...GGACTTGAGCAGCCCTTCCCCTCCAGCTACTAGCCTTATCCCAAAGGGTGCGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS TCA 90 bp GTAGTTCCTCACCGGGGTCTCTGTGCTCTCCTCTACAAGCCTGGATaGTGTACACCTTTGGCTTGCCTCTCAGGGCCTTGCAGTTCTTGT +
Preference number: 5 (lower is better)
Translates to: VVPHRGLCALLYKPG*CTPLACLSGPCSSC
Trigger: ACAAGAACTGCAAGGCCCTGAGAGGCAAGCCAAAGGTGTACATCATCCAGGCTTGTAGAGGAGAGCACAGAGACCCCGGTGAGGAACTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS GCA 90 bp TGGGATCCCTCTTCATGGTGCTTTCAAATTTCAGGTAACGGAACATaGGTTCCAGGGCCTCCATGTCTACCTCGGAACCCTCCCGGGCTT +
Preference number: 5 (lower is better)
Translates to: WDPSSWCFQISGNGT*VPGPPCLPRNPPGL
Trigger: AAGCCCGGGAGGGTTCCGAGGTAGACATGGAGGCCCTGGAACGCATGTTCCGTTACCTGAAATTTGAAAGCACCATGAAGAGGGATCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CAA 90 bp TCACCAGAGATGTCAGGACCACTAACATGGCGTCTTCTTCCTTGGGACATGCCCTTCTCATCTTCTCCCTaGAGGAGGCCTTCCTCACCA +
Preference number: 5 (lower is better)
Translates to: SPEMSGPLTWRLLPWDMPFSSSP*RRPSSP
Trigger: TGGTGAGGAAGGCCTCCTCAAGGGAGAAGATGAGAA...GGGCATGTCCCAAGGAAGAAGACGCCATGTTAGTGGTCCTGACATCTCTGGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CAA 90 bp TCACCAGAGATGTCAGGACCACTAACATGGCGTCTTCTTCCTTGGGACATGCCCCTTCCGGAGGGTGCTTaGGACTTCAGGGTTCACTTT +
Preference number: 5 (lower is better)
Translates to: SPEMSGPLTWRLLPWDMPLPEGA*DFRVHF
Trigger: AAAGTGAACCCTGAAGTCCAAAGCACCCTCCGGAAG...GGGCATGTCCCAAGGAAGAAGACGCCATGTTAGTGGTCCTGACATCTCTGGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS GCA 90 bp CCAACTCTTCCAGAAATTGCTGGGCGGTGGGATCCCTCTTCATGGTaGTTTCAAATTTCAGGTAACGGAACATGCGTTCCAGGGCCTCCA +
Preference number: 5 (lower is better)
Translates to: PTLPEIAGRWDPSSW*FQISGNGTCVPGPP
Trigger: TGGAGGCCCTGGAACGCATGTTCCGTTACCTGAAATTTGAAAGCACCATGAAGAGGGATCCCACCGCCCAGCAATTTCTGGAAGAGTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS CCA 90 bp GGGGTCTCTGTGCTCTCCTCTACAAGCCTGGATGATGTACACCTTTaGCTTGCCTCTCAGGGCCTTGCAGTTCTTGTTGTTCAAGACTTC +
Preference number: 5 (lower is better)
Translates to: GVSVLSSTSLDDVHL*LASQGLAVLVVQDF
Trigger: GAAGTCTTGAACAACAAGAACTGCAAGGCCCTGAGAGGCAAGCCAAAGGTGTACATCATCCAGGCTTGTAGAGGAGAGCACAGAGACCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS CCA 90 bp GTACCCCTCTACCGTGGAGTAGATGTGGAGGGTATCCGTATAGGTTaGGATACTTTGGGGGTTGTTCTTGAGCACAGCAACCTCATCTCC +
Preference number: 5 (lower is better)
Translates to: VPLYRGVDVEGIRIG*DTLGVVLEHSNLIS
Trigger: GGAGATGAGGTTGCTGTGCTCAAGAACAACCCCCAAAGTATCCCAACCTATACGGATACCCTCCACATCTACTCCACGGTAGAGGGGTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CAA 90 bp ATACCAAGGAAGTGGGGTCACTGCTGTGATAGATTTGGCCATGTGACTTTTATGGAACCCTCCCGGGCTTaGGTGACACACAGCGTCAGG +
Preference number: 5 (lower is better)
Translates to: IPRKWGHCCDRFGHVTFMEPSRA*VTHSVR
Trigger: CCTGACGCTGTGTGTCACCAAAGCCCGGGAGGGTTC...CATAAAAGTCACATGGCCAAATCTATCACAGCAGTGACCCCACTTCCTTGGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS CCA 90 bp CAGAGCCTTTCTCGTCATGTCTATAGGAGAGGTACCCCTCTACCGTaGAGTAGATGTGGAGGGTATCCGTATAGGTTGGGATACTTTGGG +
Preference number: 5 (lower is better)
Translates to: QSLSRHVYRRGTPLP*SRCGGYPYRLGYFG
Trigger: CCCAAAGTATCCCAACCTATACGGATACCCTCCACATCTACTCCACGGTAGAGGGGTACCTCTCCTATAGACATGACGAGAAAGGCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS TCA 90 bp TGTGGAGGGTATCCGTATAGGTTGGGATACTTTGGGGGTTGTTCTTaGGCACAGCAACCTCATCTCCACCTAGTTCCTCATCTCCACCTA +
Preference number: 5 (lower is better)
Translates to: CGGYPYRLGYFGGCS*AQQPHLHLVPHLHL
Trigger: TAGGTGGAGATGAGGAACTAGGTGGAGATGAGGTTGCTGTGCTCAAGAACAACCCCCAAAGTATCCCAACCTATACGGATACCCTCCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CAA 90 bp TCACCAGAGATGTCAGGACCACTAACATGGCGTCTTCTTCCTTGGGACATGCCCGCCTTGCAGTTCTTGTaGTTCAAGACTTCAAAAAGG +
Preference number: 5 (lower is better)
Translates to: SPEMSGPLTWRLLPWDMPALQFL*FKTSKR
Trigger: CCTTTTTGAAGTCTTGAACAACAAGAACTGCAAGGC...GGGCATGTCCCAAGGAAGAAGACGCCATGTTAGTGGTCCTGACATCTCTGGTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CAA 90 bp ATACCAAGGAAGTGGGGTCACTGCTGTGATAGATTTGGCCATGTGACTTTTATGTTCTCATCTTCTCCCTaGAGGAGGCCTTCCTCACCA +
Preference number: 5 (lower is better)
Translates to: IPRKWGHCCDRFGHVTFMFSSSP*RRPSSP
Trigger: TGGTGAGGAAGGCCTCCTCAAGGGAGAAGATGAGAA...CATAAAAGTCACATGGCCAAATCTATCACAGCAGTGACCCCACTTCCTTGGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS CCA 90 bp TGGTCTGCTGAAATTCATCCAACTCTTCCAGAAATTGCTGGGCGGTaGGATCCCTCTTCATGGTGCTTTCAAATTTCAGGTAACGGAACA +
Preference number: 5 (lower is better)
Translates to: WSAEIHPTLPEIAGR*DPSSWCFQISGNGT
Trigger: TGTTCCGTTACCTGAAATTTGAAAGCACCATGAAGAGGGATCCCACCGCCCAGCAATTTCTGGAAGAGTTGGATGAATTTCAGCAGACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CAA 90 bp GAAGAAGAATATTTATTCTGTGATGTCACTCATGGTTGTACTTCCTGCCTTGACCAACTCTTCCAGAAATaGCTGGGCGGTGGGATCCCT +
Preference number: 5 (lower is better)
Translates to: EEEYLFCDVTHGCTSCLDQLFQK*LGGGIP
Trigger: AGGGATCCCACCGCCCAGCAATTTCTGGAAGAGTTG...GTCAAGGCAGGAAGTACAACCATGAGTGACATCACAGAATAAATATTCTTCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CAA 90 bp GAAGAAGAATATTTATTCTGTGATGTCACTCATGGTTGTACTTCCTGCCTTGACGGGATACTTTGGGGGTaGTTCTTGAGCACAGCAACC +
Preference number: 5 (lower is better)
Translates to: EEEYLFCDVTHGCTSCLDGILWG*FLSTAT
Trigger: GGTTGCTGTGCTCAAGAACAACCCCCAAAGTATCCC...GTCAAGGCAGGAAGTACAACCATGAGTGACATCACAGAATAAATATTCTTCTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CAA 90 bp GAAGAAGAATATTTATTCTGTGATGTCACTCATGGTTGTACTTCCTGCCTTGACCAGGGTTCACTTTCCTaGGTTTTCCTTCCTGCATCA +
Preference number: 5 (lower is better)
Translates to: EEEYLFCDVTHGCTSCLDQGSLS*VFLPAS
Trigger: TGATGCAGGAAGGAAAACCAAGGAAAGTGAACCCTG...GTCAAGGCAGGAAGTACAACCATGAGTGACATCACAGAATAAATATTCTTCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CAA 90 bp AAGAATATTTATTCTGTGATGTCACTCATGGTTGTACTTCCTGCCTTGACTTCTCAGGGTTCACTTTCCTaGGTTTTCCTTCCTGCATCA +
Preference number: 5 (lower is better)
Translates to: KNIYSVMSLMVVLPALTSQGSLS*VFLPAS
Trigger: TGATGCAGGAAGGAAAACCAAGGAAAGTGAACCCTG...AGAAGTCAAGGCAGGAAGTACAACCATGAGTGACATCACAGAATAAATATTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CAA 90 bp GAAGAAGAATATTTATTCTGTGATGTCACTCATGGTTGTACTTCCTGCCTTGACAGGGCCTTGCAGTTCTaGTTGTTCAAGACTTCAAAA +
Preference number: 5 (lower is better)
Translates to: EEEYLFCDVTHGCTSCLDRALQF*LFKTSK
Trigger: TTTTGAAGTCTTGAACAACAAGAACTGCAAGGCCCT...GTCAAGGCAGGAAGTACAACCATGAGTGACATCACAGAATAAATATTCTTCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS-3UTR CAA 90 bp AAGAATATTTATTCTGTGATGTCACTCATGGTTGTACTTCCTGCCTTGACTTCTAGGGCCTTGCAGTTCTaGTTGTTCAAGACTTCAAAA +
Preference number: 5 (lower is better)
Translates to: KNIYSVMSLMVVLPALTSRALQF*LFKTSK
Trigger: TTTTGAAGTCTTGAACAACAAGAACTGCAAGGCCCT...AGAAGTCAAGGCAGGAAGTACAACCATGAGTGACATCACAGAATAAATATTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS CAA 72 bp AGGGCCTCCATGTCTACCTCGGAACCCTCCCGGGCTTaGGTGACACACAGCGTCAGGGCCAGGCGGGCACCT +
Preference number: 6 (lower is better)
Translates to: RASMSTSEPSRA*VTHSVRARRAP
Trigger: AGGTGCCCGCCTGGCCCTGACGCTGTGTGTCACCAAAGCCCGGGAGGGTTCCGAGGTAGACATGGAGGCCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS TCA 72 bp CCTCCATGTCTACCTCGGAACCCTCCCGGGCTTTGGTaGCACACAGCGTCAGGGCCAGGCGGGCACCTGACA +
Preference number: 6 (lower is better)
Translates to: PPCLPRNPPGLW*HTASGPGGHLT
Trigger: TGTCAGGTGCCCGCCTGGCCCTGACGCTGTGTGTCACCAAAGCCCGGGAGGGTTCCGAGGTAGACATGGAGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS CAA 90 bp ATGCGTTCCAGGGCCTCCATGTCTACCTCGGAACCCTCCCGGGCTTaGGTGACACACAGCGTCAGGGCCAGGCGGGCACCTGACATATCA +
Preference number: 6 (lower is better)
Translates to: MRSRASMSTSEPSRA*VTHSVRARRAPDIS
Trigger: TGATATGTCAGGTGCCCGCCTGGCCCTGACGCTGTGTGTCACCAAAGCCCGGGAGGGTTCCGAGGTAGACATGGAGGCCCTGGAACGCAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS GCA 72 bp CTCATCTTCTCCCTTGAGGAGGCCTTCCTCACCATGTaGCATGAGTACCACAAAGGCACAGCTGACAGGCTC +
Preference number: 6 (lower is better)
Translates to: LIFSLEEAFLTM*HEYHKGTADRL
Trigger: GAGCCTGTCAGCTGTGCCTTTGTGGTACTCATGGCACATGGTGAGGAAGGCCTCCTCAAGGGAGAAGATGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS CCA 72 bp TCTCGTCATGTCTATAGGAGAGGTACCCCTCTACCGTaGAGTAGATGTGGAGGGTATCCGTATAGGTTGGGA +
Preference number: 6 (lower is better)
Translates to: SRHVYRRGTPLP*SRCGGYPYRLG
Trigger: TCCCAACCTATACGGATACCCTCCACATCTACTCCACGGTAGAGGGGTACCTCTCCTATAGACATGACGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS GCA 72 bp TCTTCATGGTGCTTTCAAATTTCAGGTAACGGAACATaGGTTCCAGGGCCTCCATGTCTACCTCGGAACCCT +
Preference number: 6 (lower is better)
Translates to: SSWCFQISGNGT*VPGPPCLPRNP
Trigger: AGGGTTCCGAGGTAGACATGGAGGCCCTGGAACGCATGTTCCGTTACCTGAAATTTGAAAGCACCATGAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS GCA 72 bp CCAGAAATTGCTGGGCGGTGGGATCCCTCTTCATGGTaGTTTCAAATTTCAGGTAACGGAACATGCGTTCCA +
Preference number: 6 (lower is better)
Translates to: PEIAGRWDPSSW*FQISGNGTCVP
Trigger: TGGAACGCATGTTCCGTTACCTGAAATTTGAAAGCACCATGAAGAGGGATCCCACCGCCCAGCAATTTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS GCA 72 bp TGGACTTCAGGGTTCACTTTCCTTGGTTTTCCTTCCTaGATCACCTCCGTGTTTGCCATAAGTCGGGTGATC +
Preference number: 6 (lower is better)
Translates to: WTSGFTFLGFPS*ITSVFAISRVI
Trigger: GATCACCCGACTTATGGCAAACACGGAGGTGATGCAGGAAGGAAAACCAAGGAAAGTGAACCCTGAAGTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS CAA 72 bp TCTCCTCTACAAGCCTGGATGATGTACACCTTTGGCTaGCCTCTCAGGGCCTTGCAGTTCTTGTTGTTCAAG +
Preference number: 6 (lower is better)
Translates to: SPLQAWMMYTFG*PLRALQFLLFK
Trigger: CTTGAACAACAAGAACTGCAAGGCCCTGAGAGGCAAGCCAAAGGTGTACATCATCCAGGCTTGTAGAGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS CCA 72 bp CTTCCAGAAATTGCTGGGCGGTGGGATCCCTCTTCATaGTGCTTTCAAATTTCAGGTAACGGAACATGCGTT +
Preference number: 6 (lower is better)
Translates to: LPEIAGRWDPSS*CFQISGNGTCV
Trigger: AACGCATGTTCCGTTACCTGAAATTTGAAAGCACCATGAAGAGGGATCCCACCGCCCAGCAATTTCTGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS CAA 90 bp ACTTCAAAAAGGTCTTCTAGTCTGACCATCTTCTCATCTTCTCCCTaGAGGAGGCCTTCCTCACCATGTGCCATGAGTACCACAAAGGCA +
Preference number: 6 (lower is better)
Translates to: TSKRSSSLTIFSSSP*RRPSSPCAMSTTKA
Trigger: TGCCTTTGTGGTACTCATGGCACATGGTGAGGAAGGCCTCCTCAAGGGAGAAGATGAGAAGATGGTCAGACTAGAAGACCTTTTTGAAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS CAA 90 bp TCTCTGTGCTCTCCTCTACAAGCCTGGATGATGTACACCTTTGGCTaGCCTCTCAGGGCCTTGCAGTTCTTGTTGTTCAAGACTTCAAAA +
Preference number: 6 (lower is better)
Translates to: SLCSPLQAWMMYTFG*PLRALQFLLFKTSK
Trigger: TTTTGAAGTCTTGAACAACAAGAACTGCAAGGCCCTGAGAGGCAAGCCAAAGGTGTACATCATCCAGGCTTGTAGAGGAGAGCACAGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS TCA 72 bp CAGCTGACAGGCTCTTCCCAATTATCTATGGTCTGCTaGAATTCATCCAACTCTTCCAGAAATTGCTGGGCG +
Preference number: 6 (lower is better)
Translates to: QLTGSSQLSMVC*NSSNSSRNCWA
Trigger: CGCCCAGCAATTTCTGGAAGAGTTGGATGAATTTCAGCAGACCATAGATAATTGGGAAGAGCCTGTCAGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS CAA 72 bp ACCTTTGGCTTGCCTCTCAGGGCCTTGCAGTTCTTGTaGTTCAAGACTTCAAAAAGGTCTTCTAGTCTGACC +
Preference number: 6 (lower is better)
Translates to: TFGLPLRALQFL*FKTSKRSSSLT
Trigger: GGTCAGACTAGAAGACCTTTTTGAAGTCTTGAACAACAAGAACTGCAAGGCCCTGAGAGGCAAGCCAAAGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS CAA 90 bp TGGATGATGTACACCTTTGGCTTGCCTCTCAGGGCCTTGCAGTTCTaGTTGTTCAAGACTTCAAAAAGGTCTTCTAGTCTGACCATCTTC +
Preference number: 6 (lower is better)
Translates to: WMMYTFGLPLRALQF*LFKTSKRSSSLTIF
Trigger: GAAGATGGTCAGACTAGAAGACCTTTTTGAAGTCTTGAACAACAAGAACTGCAAGGCCCTGAGAGGCAAGCCAAAGGTGTACATCATCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS CAA 72 bp TACACCTTTGGCTTGCCTCTCAGGGCCTTGCAGTTCTaGTTGTTCAAGACTTCAAAAAGGTCTTCTAGTCTG +
Preference number: 6 (lower is better)
Translates to: YTFGLPLRALQF*LFKTSKRSSSL
Trigger: CAGACTAGAAGACCTTTTTGAAGTCTTGAACAACAAGAACTGCAAGGCCCTGAGAGGCAAGCCAAAGGTGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2
CDS CAA 90 bp ATGATGTACACCTTTGGCTTGCCTCTCAGGGCCTTGCAGTTCTTGTaGTTCAAGACTTCAAAAAGGTCTTCTAGTCTGACCATCTTCTCA +
Preference number: 6 (lower is better)
Translates to: MMYTFGLPLRALQFL*FKTSKRSSSLTIFS
Trigger: TGAGAAGATGGTCAGACTAGAAGACCTTTTTGAAGTCTTGAACAACAAGAACTGCAAGGCCCTGAGAGGCAAGCCAAAGGTGTACATCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000005488.9
ENSMUST00000219237.2