Pregenerated sensors for CASP12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025887Ensembl transcript IDs: ENSMUST00000027009.11, ENSMUST00000151332.2, ENSMUST00000151788.8
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCTCTCAATAGTGGGCATCTGGGTCAGTTCACCTGGGACCTCAAATaGGTGTTGAACCTTTCGAAAAATTTCCTCCAAATGATAACACCA | + |
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Preference number: 1 (lower is better) Translates to: SLNSGHLGQFTWDLK*VLNLSKNFLQMITP Trigger: TGGTGTTATCATTTGGAGGAAATTTTTCGAAAGGTTCAACACTCATTTGAGGTCCCAGGTGAACTGACCCAGATGCCCACTATTGAGAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000151788.8 |
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| 3UTR-3UTR CCA 90 bp | CAGCTCAACACACGTTCCTCATCTGTATCAGCAGTGGCTATCCCTTTGTTTGTGGTGCTGTCTGAGGACTaGTGCTCTGGACGGCCAGCA | + |
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Preference number: 2 (lower is better) Translates to: QLNTRSSSVSAVAIPLFVVLSED*CSGRPA Trigger: TGCTGGCCGTCCAGAGCACCAGTCCTCAGACAGCAC...CACAAACAAAGGGATAGCCACTGCTGATACAGATGAGGAACGTGTGTTGAGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151788.8 |
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| 3UTR-3UTR GCA 90 bp | GGCCTTTGTTATACTATTATTCCATTTACAGCTCAACACACGTTCCTCATCTGTCTGTCTGAGGACTGGTaGTCTGGACGGCCAGCAAAC | + |
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Preference number: 2 (lower is better) Translates to: GLCYTIIPFTAQHTFLICLSEDW*SGRPAN Trigger: GTTTGCTGGCCGTCCAGAGCACCAGTCCTCAGACAG...ACAGATGAGGAACGTGTGTTGAGCTGTAAATGGAATAATAGTATAACAAAGGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151788.8 |
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| 3UTR CAA 90 bp | CAGCTCAACACACGTTCCTCATCTGTATCAGCAGTGGCTATCCCTTaGTTTGTGGATACCCAAATAGTTCCATTATATCTGCCTCTGCAG | + |
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Preference number: 2 (lower is better) Translates to: QLNTRSSSVSAVAIP*FVDTQIVPLYLPLQ Trigger: CTGCAGAGGCAGATATAATGGAACTATTTGGGTATCCACAAACAAAGGGATAGCCACTGCTGATACAGATGAGGAACGTGTGTTGAGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151788.8 |
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| 3UTR CAA 90 bp | TCCTGGGATCTTGGAATTTTCTTTTCTTCTCAGCTACAGCAATACTaGACTGGGAACTGCATGAGAGTTGCCTGTGCTAATTCCCGGGAA | + |
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Preference number: 2 (lower is better) Translates to: SWDLGIFFSSQLQQY*TGNCMRVACANSRE Trigger: TTCCCGGGAATTAGCACAGGCAACTCTCATGCAGTTCCCAGTCAAGTATTGCTGTAGCTGAGAAGAAAAGAAAATTCCAAGATCCCAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000151788.8 |
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| 3UTR-3UTR TCA 90 bp | CTACAGCAATACTTGACTGGGAACTGCATGAGAGTTGCCTGTGCTAATTCCCGGACCTCAAATGAGTGTTaGACCTTTCGAAAAATTTCC | + |
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Preference number: 2 (lower is better) Translates to: LQQYLTGNCMRVACANSRTSNEC*TFRKIS Trigger: GGAAATTTTTCGAAAGGTTCAACACTCATTTGAGGT...CCGGGAATTAGCACAGGCAACTCTCATGCAGTTCCCAGTCAAGTATTGCTGTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000151788.8 |
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| 3UTR-3UTR GCA 90 bp | ACACTCAGAAGGGGTGGCTCTCACAATTTCAAGGCATGCTTGTACAGAACTTGTCATGAAAACCATGTATaGCAGAGACAAACAGTGGAC | + |
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Preference number: 2 (lower is better) Translates to: TLRRGGSHNFKACLYRTCHENHV*QRQTVD Trigger: GTCCACTGTTTGTCTCTGGCATACATGGTTTTCATG...ACAAGTTCTGTACAAGCATGCCTTGAAATTGTGAGAGCCACCCCTTCTGAGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| 3UTR-3UTR GCA 90 bp | GGCCTTTGTTATACTATTATTCCATTTACAGCTCAACACACGTTCCTCATCTGTCTGCCTCTGCAGGCCTaGATGATGAGAATCTTGGGT | + |
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Preference number: 2 (lower is better) Translates to: GLCYTIIPFTAQHTFLICLPLQA*MMRILG Trigger: ACCCAAGATTCTCATCATGCAGGCCTGCAGAGGCAG...ACAGATGAGGAACGTGTGTTGAGCTGTAAATGGAATAATAGTATAACAAAGGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151788.8 |
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| 3UTR-3UTR TCA 90 bp | CCACATGGGCCTTTGTTATACTATTATTCCATTTACAGCTCAACACACGTTCCTAAGATAGTGTCATCATaGAGAACATCTGGCTTTTTG | + |
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Preference number: 2 (lower is better) Translates to: PHGPLLYYYSIYSSTHVPKIVSS*RTSGFL Trigger: CAAAAAGCCAGATGTTCTTCATGATGACACTATCTT...AGGAACGTGTGTTGAGCTGTAAATGGAATAATAGTATAACAAAGGCCCATGTGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000151788.8 |
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| 3UTR-3UTR TCA 90 bp | TATGCAACAGTTTCATTTCTCAGCTACATTGTAGATAAGATCTTCCTTGTGAGTACCTGGGACCTCAAATaGGTGTTGAACCTTTCGAAA | + |
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Preference number: 2 (lower is better) Translates to: YATVSFLSYIVDKIFLVSTWDLK*VLNLSK Trigger: TTTCGAAAGGTTCAACACTCATTTGAGGTCCCAGGT...ACTCACAAGGAAGATCTTATCTACAATGTAGCTGAGAAATGAAACTGTTGCATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151788.8 |
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| 3UTR-3UTR CCA 90 bp | GTGAAAGTGGTTCATCAAAAGGTGTATCATCTTTGTTCTTTAGTGTCTTTTTCCACAGCAATACTTGACTaGGAACTGCATGAGAGTTGC | + |
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Preference number: 2 (lower is better) Translates to: VKVVHQKVYHLCSLVSFSTAILD*ELHESC Trigger: GCAACTCTCATGCAGTTCCCAGTCAAGTATTGCTGT...GGAAAAAGACACTAAAGAACAAAGATGATACACCTTTTGATGAACCACTTTCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| 3UTR-3UTR GCA 90 bp | TATGCAACAGTTTCATTTCTCAGCTACATTGTAGATAAGATCTTCCTTGTGAGTAGAGGGAACCAGTCTTaGCTACCTTCCAAGAAATAT | + |
|
Preference number: 2 (lower is better) Translates to: YATVSFLSYIVDKIFLVSRGNQS*LPSKKY Trigger: ATATTTCTTGGAAGGTAGGCAAGACTGGTTCCCTCT...ACTCACAAGGAAGATCTTATCTACAATGTAGCTGAGAAATGAAACTGTTGCATA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151788.8 |
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| 3UTR TCA 72 bp | AGTGGGCATCTGGGTCAGTTCACCTGGGACCTCAAATaGGTGTTGAACCTTTCGAAAAATTTCCTCCAAATG | + |
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Preference number: 3 (lower is better) Translates to: SGHLGQFTWDLK*VLNLSKNFLQM Trigger: CATTTGGAGGAAATTTTTCGAAAGGTTCAACACTCATTTGAGGTCCCAGGTGAACTGACCCAGATGCCCACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000151788.8 |
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| 3UTR-3UTR CAA 90 bp | ATGATAACACCAACAGTACTTTTTGAAGCAGTCAATGAGTTTGGAAATGAAGAGAGAACATCTGGCTTTTaGTTTCGGTGCTTCACCCCA | + |
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Preference number: 3 (lower is better) Translates to: MITPTVLFEAVNEFGNEERTSGF*FRCFTP Trigger: TGGGGTGAAGCACCGAAACAAAAAGCCAGATGTTCT...CTCTTCATTTCCAAACTCATTGACTGCTTCAAAAAGTACTGTTGGTGTTATCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000151788.8 |
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| 3UTR-3UTR CAA 90 bp | GTGAAAGTGGTTCATCAAAAGGTGTATCATCTTTGTTCTTTAGTGTCTTTTTCCATGAGAATCTTGGGTTaGTTTCTCAGACTCCGACAG | + |
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Preference number: 3 (lower is better) Translates to: VKVVHQKVYHLCSLVSFSMRILG*FLRLRQ Trigger: CTGTCGGAGTCTGAGAAACAAACCCAAGATTCTCAT...GGAAAAAGACACTAAAGAACAAAGATGATACACCTTTTGATGAACCACTTTCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000151788.8 |
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| 3UTR-3UTR CAA 90 bp | TATGCAACAGTTTCATTTCTCAGCTACATTGTAGATAAGATCTTCCTTGTGAGTTGCATGATGAGAATCTaGGGTTTGTTTCTCAGACTC | + |
|
Preference number: 3 (lower is better) Translates to: YATVSFLSYIVDKIFLVSCMMRI*GLFLRL Trigger: GAGTCTGAGAAACAAACCCAAGATTCTCATCATGCA...ACTCACAAGGAAGATCTTATCTACAATGTAGCTGAGAAATGAAACTGTTGCATA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151788.8 |
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| 3UTR-3UTR CAA 90 bp | TATGCAACAGTTTCATTTCTCAGCTACATTGTAGATAAGATCTTCCTTGTGAGTAAGCAGTCAATGAGTTaGGAAATGAAGAGGGAACCA | + |
|
Preference number: 3 (lower is better) Translates to: YATVSFLSYIVDKIFLVSKQSMS*EMKREP Trigger: TGGTTCCCTCTTCATTTCCAAACTCATTGACTGCTT...ACTCACAAGGAAGATCTTATCTACAATGTAGCTGAGAAATGAAACTGTTGCATA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000151788.8 |
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| CDS-3UTR CCA 90 bp | ACACTCAGAAGGGGTGGCTCTCACAATTTCAAGGCATGCTTGTACAGAACTTGTGTGCTGTCTGAGGACTaGTGCTCTGGACGGCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: TLRRGGSHNFKACLYRTCVLSED*CSGRPA Trigger: TGCTGGCCGTCCAGAGCACCAGTCCTCAGACAGCAC...ACAAGTTCTGTACAAGCATGCCTTGAAATTGTGAGAGCCACCCCTTCTGAGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027009.11 |
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| CDS-3UTR GCA 90 bp | ACACTCAGAAGGGGTGGCTCTCACAATTTCAAGGCATGCTTGTACAGAACTTGTCTGTCTGAGGACTGGTaGTCTGGACGGCCAGCAAAC | + |
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Preference number: 4 (lower is better) Translates to: TLRRGGSHNFKACLYRTCLSEDW*SGRPAN Trigger: GTTTGCTGGCCGTCCAGAGCACCAGTCCTCAGACAG...ACAAGTTCTGTACAAGCATGCCTTGAAATTGTGAGAGCCACCCCTTCTGAGTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027009.11 |
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| CDS-3UTR CCA 90 bp | ACACTCAGAAGGGGTGGCTCTCACAATTTCAAGGCATGCTTGTACAGAACTTGTAGCTTCAGTGTATCTTaGACTTCTGAGCTCTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: TLRRGGSHNFKACLYRTCSFSVS*TSELWS Trigger: ACTCCAGAGCTCAGAAGTCCAAGATACACTGAAGCT...ACAAGTTCTGTACAAGCATGCCTTGAAATTGTGAGAGCCACCCCTTCTGAGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS-3UTR TCA 90 bp | CTTGGAATTTTCTTTTCTTCTCAGCTACAGCAATACTTGACTGGGAACTGCATGCAGCCTTGTTCAGGATaGAACTCGCACTTTCCCCTA | + |
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Preference number: 4 (lower is better) Translates to: LGIFFSSQLQQYLTGNCMQPCSG*NSHFPL Trigger: TAGGGGAAAGTGCGAGTTTCATCCTGAACAAGGCTG...CATGCAGTTCCCAGTCAAGTATTGCTGTAGCTGAGAAGAAAAGAAAATTCCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS-3UTR GCA 90 bp | ACACTCAGAAGGGGTGGCTCTCACAATTTCAAGGCATGCTTGTACAGAACTTGTAGAGGGAACCAGTCTTaGCTACCTTCCAAGAAATAT | + |
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Preference number: 4 (lower is better) Translates to: TLRRGGSHNFKACLYRTCRGNQS*LPSKKY Trigger: ATATTTCTTGGAAGGTAGGCAAGACTGGTTCCCTCT...ACAAGTTCTGTACAAGCATGCCTTGAAATTGTGAGAGCCACCCCTTCTGAGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027009.11 |
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| CDS-3UTR TCA 90 bp | ACACTCAGAAGGGGTGGCTCTCACAATTTCAAGGCATGCTTGTACAGAACTTGTTTTTCTCTTGGATTCTaGTGGAGAAGAAGGTGTACA | + |
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Preference number: 4 (lower is better) Translates to: TLRRGGSHNFKACLYRTCFSLGF*WRRRCT Trigger: TGTACACCTTCTTCTCCATCAGAATCCAAGAGAAAA...ACAAGTTCTGTACAAGCATGCCTTGAAATTGTGAGAGCCACCCCTTCTGAGTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS-3UTR TCA 90 bp | ACACTCAGAAGGGGTGGCTCTCACAATTTCAAGGCATGCTTGTACAGAACTTGTACCTCAAATGAGTGTTaGACCTTTCGAAAAATTTCC | + |
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Preference number: 4 (lower is better) Translates to: TLRRGGSHNFKACLYRTCTSNEC*TFRKIS Trigger: GGAAATTTTTCGAAAGGTTCAACACTCATTTGAGGT...ACAAGTTCTGTACAAGCATGCCTTGAAATTGTGAGAGCCACCCCTTCTGAGTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027009.11 |
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| CDS-3UTR TCA 90 bp | TCTCACAATTTCAAGGCATGCTTGTACAGAACTTGTAACCCCAGGAAAAATGAGACCTGGGACCTCAAATaGGTGTTGAACCTTTCGAAA | + |
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Preference number: 4 (lower is better) Translates to: SHNFKACLYRTCNPRKNETWDLK*VLNLSK Trigger: TTTCGAAAGGTTCAACACTCATTTGAGGTCCCAGGT...CTCATTTTTCCTGGGGTTACAAGTTCTGTACAAGCATGCCTTGAAATTGTGAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027009.11 |
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| CDS-3UTR GCA 90 bp | GGTAGGTGGGCTTCATCACATACTTGTAGAAGAATTCAATTTTGCATAGAATTTCTGCCTCTGCAGGCCTaGATGATGAGAATCTTGGGT | + |
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Preference number: 4 (lower is better) Translates to: GRWASSHTCRRIQFCIEFLPLQA*MMRILG Trigger: ACCCAAGATTCTCATCATGCAGGCCTGCAGAGGCAG...AAATTCTATGCAAAATTGAATTCTTCTACAAGTATGTGATGAAGCCCACCTACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027009.11 |
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| CDS-3UTR TCA 90 bp | GTGAAAGTGGTTCATCAAAAGGTGTATCATCTTTGTTCTTTAGTGTCTTTTTCCCAGCCTTGTTCAGGATaGAACTCGCACTTTCCCCTA | + |
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Preference number: 4 (lower is better) Translates to: VKVVHQKVYHLCSLVSFSQPCSG*NSHFPL Trigger: TAGGGGAAAGTGCGAGTTTCATCCTGAACAAGGCTG...GGAAAAAGACACTAAAGAACAAAGATGATACACCTTTTGATGAACCACTTTCAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS-3UTR TCA 90 bp | TATTCCATTTACAGCTCAACACACGTTCCTCATCTGTATCAGCAGTGGCTATCCTTTATCTTACAAAACTaGTCACGTGGACAAAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: YSIYSSTHVPHLYQQWLSFILQN*SRGQSF Trigger: GAAGCTTTGTCCACGTGATCAGTTTTGTAAGATAAA...GGATAGCCACTGCTGATACAGATGAGGAACGTGTGTTGAGCTGTAAATGGAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000151788.8 |
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| CDS-3UTR CCA 90 bp | CTTGGAATTTTCTTTTCTTCTCAGCTACAGCAATACTTGACTGGGAACTGCATGCTCCTTCTCCATCACTaGATATATCTCTTTTGCCCT | + |
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Preference number: 4 (lower is better) Translates to: LGIFFSSQLQQYLTGNCMLLLHH*IYLFCP Trigger: AGGGCAAAAGAGATATATCCAGTGATGGAGAAGGAG...CATGCAGTTCCCAGTCAAGTATTGCTGTAGCTGAGAAGAAAAGAAAATTCCAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS-3UTR CCA 90 bp | TCTTGGAATTTTCTTTTCTTCTCAGCTACAGCAATACTTGACTGGGAACTGCATCATCTGTATCAGCAGTaGCTATCCCTTTGTTTGTGG | + |
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Preference number: 4 (lower is better) Translates to: SWNFLFFSATAILDWELHHLYQQ*LSLCLW Trigger: CCACAAACAAAGGGATAGCCACTGCTGATACAGATG...ATGCAGTTCCCAGTCAAGTATTGCTGTAGCTGAGAAGAAAAGAAAATTCCAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027009.11 |
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| CDS-3UTR CCA 90 bp | TCTCACAATTTCAAGGCATGCTTGTACAGAACTTGTAACCCCAGGAAAAATGAGTGGGAATTGGCAATGTaGCCAGCAAATATTTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: SHNFKACLYRTCNPRKNEWELAM*PANIFP Trigger: AGGAAAAATATTTGCTGGCCACATTGCCAATTCCCA...CTCATTTTTCCTGGGGTTACAAGTTCTGTACAAGCATGCCTTGAAATTGTGAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS-3UTR TCA 90 bp | TATGCAACAGTTTCATTTCTCAGCTACATTGTAGATAAGATCTTCCTTGTGAGTCCTTGGCCAAACCTTTaGTCTTGTAGATTGGATCTC | + |
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Preference number: 4 (lower is better) Translates to: YATVSFLSYIVDKIFLVSPWPNL*SCRLDL Trigger: GAGATCCAATCTACAAGATCAAAGGTTTGGCCAAGG...ACTCACAAGGAAGATCTTATCTACAATGTAGCTGAGAAATGAAACTGTTGCATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS-3UTR CCA 90 bp | TCTTGGAATTTTCTTTTCTTCTCAGCTACAGCAATACTTGACTGGGAACTGCATCCTCTACTTTTCTCTTaGATTCTGATGGAGAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: SWNFLFFSATAILDWELHPLLFS*ILMEKK Trigger: CTTCTTCTCCATCAGAATCCAAGAGAAAAGTAGAGG...ATGCAGTTCCCAGTCAAGTATTGCTGTAGCTGAGAAGAAAAGAAAATTCCAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS-3UTR TCA 90 bp | TCTTGGAATTTTCTTTTCTTCTCAGCTACAGCAATACTTGACTGGGAACTGCATCACTTTCCCCTATTTTaGGTAACTCATCTCCATTTA | + |
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Preference number: 4 (lower is better) Translates to: SWNFLFFSATAILDWELHHFPLF*VTHLHL Trigger: TAAATGGAGATGAGTTACTCAAAATAGGGGAAAGTG...ATGCAGTTCCCAGTCAAGTATTGCTGTAGCTGAGAAGAAAAGAAAATTCCAAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS-3UTR TCA 90 bp | GGTAGGTGGGCTTCATCACATACTTGTAGAAGAATTCAATTTTGCATAGAATTTTCTGTCTCCATTTCCTaGGCTGTAAGGTTTTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: GRWASSHTCRRIQFCIEFSVSIS*AVRFSF Trigger: AAAGGAAAACCTTACAGCTCAGGAAATGGAGACAGA...AAATTCTATGCAAAATTGAATTCTTCTACAAGTATGTGATGAAGCCCACCTACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027009.11 |
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| CDS-3UTR CCA 90 bp | GTGAAAGTGGTTCATCAAAAGGTGTATCATCTTTGTTCTTTAGTGTCTTTTTCCCTCCTTCTCCATCACTaGATATATCTCTTTTGCCCT | + |
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Preference number: 4 (lower is better) Translates to: VKVVHQKVYHLCSLVSFSLLLHH*IYLFCP Trigger: AGGGCAAAAGAGATATATCCAGTGATGGAGAAGGAG...GGAAAAAGACACTAAAGAACAAAGATGATACACCTTTTGATGAACCACTTTCAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS-3UTR TCA 90 bp | ATGATAACACCAACAGTACTTTTTGAAGCAGTCAATGAGTTTGGAAATGAAGAGTTTTCTCTTGGATTCTaGTGGAGAAGAAGGTGTACA | + |
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Preference number: 4 (lower is better) Translates to: MITPTVLFEAVNEFGNEEFSLGF*WRRRCT Trigger: TGTACACCTTCTTCTCCATCAGAATCCAAGAGAAAA...CTCTTCATTTCCAAACTCATTGACTGCTTCAAAAAGTACTGTTGGTGTTATCAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000151788.8 |
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| CDS-3UTR CCA 90 bp | CAAAGAAGAAGTTCCAGGATATGTTCAGACATGTTCTTTAGTGTCTTTTTCCTTTGGGAATTGGCAATGTaGCCAGCAAATATTTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: QRRSSRICSDMFFSVFFLWELAM*PANIFP Trigger: AGGAAAAATATTTGCTGGCCACATTGCCAATTCCCA...AAGGAAAAAGACACTAAAGAACATGTCTGAACATATCCTGGAACTTCTTCTTTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS-3UTR CCA 90 bp | GGTAGGTGGGCTTCATCACATACTTGTAGAAGAATTCAATTTTGCATAGAATTTCCTCTACTTTTCTCTTaGATTCTGATGGAGAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: GRWASSHTCRRIQFCIEFPLLFS*ILMEKK Trigger: CTTCTTCTCCATCAGAATCCAAGAGAAAAGTAGAGG...AAATTCTATGCAAAATTGAATTCTTCTACAAGTATGTGATGAAGCCCACCTACC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS-3UTR TCA 90 bp | CAAAGAAGAAGTTCCAGGATATGTTCAGACATGTTCTTTAGTGTCTTTTTCCTTCACTTTCCCCTATTTTaGGTAACTCATCTCCATTTA | + |
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Preference number: 4 (lower is better) Translates to: QRRSSRICSDMFFSVFFLHFPLF*VTHLHL Trigger: TAAATGGAGATGAGTTACTCAAAATAGGGGAAAGTG...AAGGAAAAAGACACTAAAGAACATGTCTGAACATATCCTGGAACTTCTTCTTTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS-3UTR TCA 90 bp | GTGAAAGTGGTTCATCAAAAGGTGTATCATCTTTGTTCTTTAGTGTCTTTTTCCTTTATCTTACAAAACTaGTCACGTGGACAAAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: VKVVHQKVYHLCSLVSFSFILQN*SRGQSF Trigger: GAAGCTTTGTCCACGTGATCAGTTTTGTAAGATAAA...GGAAAAAGACACTAAAGAACAAAGATGATACACCTTTTGATGAACCACTTTCAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS-3UTR TCA 90 bp | TATGCAACAGTTTCATTTCTCAGCTACATTGTAGATAAGATCTTCCTTGTGAGTAAGATAGTGTCATCATaGAGAACATCTGGCTTTTTG | + |
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Preference number: 4 (lower is better) Translates to: YATVSFLSYIVDKIFLVSKIVSS*RTSGFL Trigger: CAAAAAGCCAGATGTTCTTCATGATGACACTATCTT...ACTCACAAGGAAGATCTTATCTACAATGTAGCTGAGAAATGAAACTGTTGCATA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027009.11 |
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| CDS-3UTR CCA 90 bp | GTGAAAGTGGTTCATCAAAAGGTGTATCATCTTTGTTCTTTAGTGTCTTTTTCCATCATGAAGAACATCTaGCTTTTTGTTTCGGTGCTT | + |
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Preference number: 4 (lower is better) Translates to: VKVVHQKVYHLCSLVSFSIMKNI*LFVSVL Trigger: AAGCACCGAAACAAAAAGCCAGATGTTCTTCATGAT...GGAAAAAGACACTAAAGAACAAAGATGATACACCTTTTGATGAACCACTTTCAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000027009.11 |
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| CDS-3UTR CCA 90 bp | CAAAGAAGAAGTTCCAGGATATGTTCAGACATGTTCTTTAGTGTCTTTTTCCTTCCAAGAAATATTATGTaGGGTAGAAGATTTGAAAGC | + |
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Preference number: 4 (lower is better) Translates to: QRRSSRICSDMFFSVFFLPRNIM*GRRFES Trigger: GCTTTCAAATCTTCTACCCCACATAATATTTCTTGG...AAGGAAAAAGACACTAAAGAACATGTCTGAACATATCCTGGAACTTCTTCTTTG 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027009.11 |
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| CDS-3UTR CAA 90 bp | ACACTCAGAAGGGGTGGCTCTCACAATTTCAAGGCATGCTTGTACAGAACTTGTTCCTCTACTTTTCTCTaGGATTCTGATGGAGAAGAA | + |
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Preference number: 5 (lower is better) Translates to: TLRRGGSHNFKACLYRTCSSTFL*DSDGEE Trigger: TTCTTCTCCATCAGAATCCAAGAGAAAAGTAGAGGA...ACAAGTTCTGTACAAGCATGCCTTGAAATTGTGAGAGCCACCCCTTCTGAGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS-3UTR CAA 90 bp | ACACTCAGAAGGGGTGGCTCTCACAATTTCAAGGCATGCTTGTACAGAACTTGTTCTCCACATGGGCCTTaGTTATACTATTATTCCATT | + |
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Preference number: 5 (lower is better) Translates to: TLRRGGSHNFKACLYRTCSPHGP*LYYYSI Trigger: AATGGAATAATAGTATAACAAAGGCCCATGTGGAGA...ACAAGTTCTGTACAAGCATGCCTTGAAATTGTGAGAGCCACCCCTTCTGAGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027009.11 |
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| CDS-3UTR CAA 90 bp | GGTAGGTGGGCTTCATCACATACTTGTAGAAGAATTCAATTTTGCATAGAATTTAGCTGTTCCTGGGAATaGGCAATGTGGCCAGCAAAT | + |
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Preference number: 5 (lower is better) Translates to: GRWASSHTCRRIQFCIEFSCSWE*AMWPAN Trigger: ATTTGCTGGCCACATTGCCAATTCCCAGGAACAGCT...AAATTCTATGCAAAATTGAATTCTTCTACAAGTATGTGATGAAGCCCACCTACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS-3UTR CAA 90 bp | TATGCAACAGTTTCATTTCTCAGCTACATTGTAGATAAGATCTTCCTTGTGAGTAGCTGTTCCTGGGAATaGGCAATGTGGCCAGCAAAT | + |
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Preference number: 5 (lower is better) Translates to: YATVSFLSYIVDKIFLVSSCSWE*AMWPAN Trigger: ATTTGCTGGCCACATTGCCAATTCCCAGGAACAGCT...ACTCACAAGGAAGATCTTATCTACAATGTAGCTGAGAAATGAAACTGTTGCATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS TCA 90 bp | ACTGGATATATCTCTTTTGCCCTTTCTGTCTTTATCTTACAAAACTaGTCACGTGGACAAAGCTTCAGTGTATCTTGGACTTCTGAGCTC | + |
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Preference number: 5 (lower is better) Translates to: TGYISFALSVFILQN*SRGQSFSVSWTSEL Trigger: GAGCTCAGAAGTCCAAGATACACTGAAGCTTTGTCCACGTGATCAGTTTTGTAAGATAAAGACAGAAAGGGCAAAAGAGATATATCCAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027009.11 ENSMUST00000151332.2 ENSMUST00000151788.8 |
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| CDS-3UTR CAA 90 bp | CAAAGAAGAAGTTCCAGGATATGTTCAGACATGTTCTTTAGTGTCTTTTTCCTTAGAACATCTGGCTTTTaGTTTCGGTGCTTCACCCCA | + |
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Preference number: 5 (lower is better) Translates to: QRRSSRICSDMFFSVFFLRTSGF*FRCFTP Trigger: TGGGGTGAAGCACCGAAACAAAAAGCCAGATGTTCT...AAGGAAAAAGACACTAAAGAACATGTCTGAACATATCCTGGAACTTCTTCTTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027009.11 |
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| CDS-3UTR CAA 90 bp | TCTTGGAATTTTCTTTTCTTCTCAGCTACAGCAATACTTGACTGGGAACTGCATTGCATGATGAGAATCTaGGGTTTGTTTCTCAGACTC | + |
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Preference number: 5 (lower is better) Translates to: SWNFLFFSATAILDWELHCMMRI*GLFLRL Trigger: GAGTCTGAGAAACAAACCCAAGATTCTCATCATGCA...ATGCAGTTCCCAGTCAAGTATTGCTGTAGCTGAGAAGAAAAGAAAATTCCAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027009.11 |
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| CDS TCA 90 bp | ACTTTTCTCTTGGATTCTGATGGAGAAGAAGGTGTACATATCTTCTaGGGTCCATCATCCTCATCATTAGAAAATTGTAAACTCAGCTGT | + |
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Preference number: 5 (lower is better) Translates to: TFLLDSDGEEGVHIF*GPSSSSLENCKLSC Trigger: ACAGCTGAGTTTACAATTTTCTAATGATGAGGATGATGGACCTCAGAAGATATGTACACCTTCTTCTCCATCAGAATCCAAGAGAAAAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS-3UTR CAA 90 bp | TCTTGGAATTTTCTTTTCTTCTCAGCTACAGCAATACTTGACTGGGAACTGCATCTGGATATATCTCTTTaGCCCTTTCTGTCTTTATCT | + |
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Preference number: 5 (lower is better) Translates to: SWNFLFFSATAILDWELHLDISL*PFLSLS Trigger: AGATAAAGACAGAAAGGGCAAAAGAGATATATCCAG...ATGCAGTTCCCAGTCAAGTATTGCTGTAGCTGAGAAGAAAAGAAAATTCCAAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS-3UTR CAA 90 bp | CAAAGAAGAAGTTCCAGGATATGTTCAGACATGTTCTTTAGTGTCTTTTTCCTTTGTGGGGTAGAAGATTaGAAAGCAATGAAATCTGTC | + |
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Preference number: 5 (lower is better) Translates to: QRRSSRICSDMFFSVFFLCGVED*KAMKSV Trigger: GACAGATTTCATTGCTTTCAAATCTTCTACCCCACA...AAGGAAAAAGACACTAAAGAACATGTCTGAACATATCCTGGAACTTCTTCTTTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027009.11 |
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| CDS-3UTR CAA 90 bp | GTGAAAGTGGTTCATCAAAAGGTGTATCATCTTTGTTCTTTAGTGTCTTTTTCCCTGGATATATCTCTTTaGCCCTTTCTGTCTTTATCT | + |
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Preference number: 5 (lower is better) Translates to: VKVVHQKVYHLCSLVSFSLDISL*PFLSLS Trigger: AGATAAAGACAGAAAGGGCAAAAGAGATATATCCAG...GGAAAAAGACACTAAAGAACAAAGATGATACACCTTTTGATGAACCACTTTCAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS TCA 72 bp | TTCAGTGTATCTTGGACTTCTGAGCTCTGGAGTCCATaGGGAGCTGTCAGCATTAGATGTGATTCATGGGCC | + |
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Preference number: 6 (lower is better) Translates to: FSVSWTSELWSP*GAVSIRCDSWA Trigger: GGCCCATGAATCACATCTAATGCTGACAGCTCCTCATGGACTCCAGAGCTCAGAAGTCCAAGATACACTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027009.11 ENSMUST00000151332.2 ENSMUST00000151788.8 |
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| CDS CCA 72 bp | AATTGTAAACTCAGCTGTTCCTGGGAATTGGCAATGTaGCCAGCAAATATTTTTCCTGCCATGTCTGTTTTC | + |
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Preference number: 6 (lower is better) Translates to: NCKLSCSWELAM*PANIFPAMSVF Trigger: GAAAACAGACATGGCAGGAAAAATATTTGCTGGCCACATTGCCAATTCCCAGGAACAGCTGAGTTTACAATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS CAA 90 bp | AGATTCTCAGCCTTGTTCAGGATGAAACTCGCACTTTCCCCTATTTaGAGTAACTCATCTCCATTTAAAACATTCTTCTCCACCAGGTCA | + |
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Preference number: 6 (lower is better) Translates to: RFSALFRMKLALSPI*SNSSPFKTFFSTRS Trigger: TGACCTGGTGGAGAAGAATGTTTTAAATGGAGATGAGTTACTCAAAATAGGGGAAAGTGCGAGTTTCATCCTGAACAAGGCTGAGAATCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS CAA 72 bp | GCCTTGTTCAGGATGAAACTCGCACTTTCCCCTATTTaGAGTAACTCATCTCCATTTAAAACATTCTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: ALFRMKLALSPI*SNSSPFKTFFS Trigger: GGAGAAGAATGTTTTAAATGGAGATGAGTTACTCAAAATAGGGGAAAGTGCGAGTTTCATCCTGAACAAGGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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| CDS TCA 72 bp | ATCTCTTTTGCCCTTTCTGTCTTTATCTTACAAAACTaGTCACGTGGACAAAGCTTCAGTGTATCTTGGACT | + |
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Preference number: 6 (lower is better) Translates to: ISFALSVFILQN*SRGQSFSVSWT Trigger: AGTCCAAGATACACTGAAGCTTTGTCCACGTGATCAGTTTTGTAAGATAAAGACAGAAAGGGCAAAAGAGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000027009.11 ENSMUST00000151332.2 ENSMUST00000151788.8 |
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| CDS TCA 72 bp | TTGGATTCTGATGGAGAAGAAGGTGTACATATCTTCTaGGGTCCATCATCCTCATCATTAGAAAATTGTAAA | + |
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Preference number: 6 (lower is better) Translates to: LDSDGEEGVHIF*GPSSSSLENCK Trigger: TTTACAATTTTCTAATGATGAGGATGATGGACCTCAGAAGATATGTACACCTTCTTCTCCATCAGAATCCAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027009.11 ENSMUST00000151788.8 |
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