Pregenerated sensors for CASP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025888Ensembl transcript IDs: ENSMUST00000027015.7, ENSMUST00000238505.2, ENSMUST00000238730.2
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TTGATGAGTGACTCAATGAAAAGTGAGCCCCTGACAGGATGTCTCCAAGACACAAAATCTTTCTCTATATaGGCCTTCTTAATGCCATCA | + |
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Preference number: 2 (lower is better) Translates to: LMSDSMKSEPLTGCLQDTKSFSI*AFLMPS Trigger: TGATGGCATTAAGAAGGCCCATATAGAGAAAGATTT...TGTGTCTTGGAGACATCCTGTCAGGGGCTCACTTTTCATTGAGTCACTCATCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000238730.2 |
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| 3UTR CCA 72 bp | TTTATTGCATCATCTAAGGAAGTATTGGCTTCTTATTaGCACGATTCTCAGCATAGGTACATAAGAATGAAC | + |
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Preference number: 3 (lower is better) Translates to: FIASSKEVLASY*HDSQHRYIRMN Trigger: GTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGCCAATACTTCCTTAGATGATGCAATAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS-3UTR GCA 90 bp | AGGGTCACCCTATCAGCAGTGGGCATCTGTAGCCTAAATTCTGGTTGTTCAAATTTGTCAGAAGTCTTGTaGTCTGGGCAGGCAGCAAAT | + |
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Preference number: 4 (lower is better) Translates to: RVTLSAVGICSLNSGCSNLSEVL*SGQAAN Trigger: ATTTGCTGCCTGCCCAGAGCACAAGACTTCTGACAA...ATTTGAACAACCAGAATTTAGGCTACAGATGCCCACTGCTGATAGGGTGACCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238730.2 |
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| CDS-3UTR TCA 90 bp | TTGATGAGTGACTCAATGAAAAGTGAGCCCCTGACAGGATGTCTCCAAGACACAGCAACTTCATTTCTCTaGGGTCAACTTGAGCTCCAA | + |
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Preference number: 4 (lower is better) Translates to: LMSDSMKSEPLTGCLQDTATSFL*GQLELQ Trigger: TTGGAGCTCAAGTTGACCTCAGAGAAATGAAGTTGC...TGTGTCTTGGAGACATCCTGTCAGGGGCTCACTTTTCATTGAGTCACTCATCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238730.2 |
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| CDS-3UTR CCA 90 bp | TGTTTGATGAGTGACTCAATGAAAAGTGAGCCCCTGACAGGATGTCTCCAAGACAGAAGTCTTGTGCTCTaGGCAGGCAGCAAATTCTTT | + |
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Preference number: 4 (lower is better) Translates to: CLMSDSMKSEPLTGCLQDRSLVL*AGSKFF Trigger: AAAGAATTTGCTGCCTGCCCAGAGCACAAGACTTCT...GTCTTGGAGACATCCTGTCAGGGGCTCACTTTTCATTGAGTCACTCATCAAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238730.2 |
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| CDS-3UTR TCA 90 bp | TTGATGAGTGACTCAATGAAAAGTGAGCCCCTGACAGGATGTCTCCAAGACACACTCGGAGAAAGATGTTaGAACTCTGTGTTGCAGATA | + |
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Preference number: 4 (lower is better) Translates to: LMSDSMKSEPLTGCLQDTLGERC*NSVLQI Trigger: TATCTGCAACACAGAGTTTCAACATCTTTCTCCGAG...TGTGTCTTGGAGACATCCTGTCAGGGGCTCACTTTTCATTGAGTCACTCATCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238730.2 |
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| CDS-3UTR GCA 90 bp | TTGGCTTCTTATTGGCACGATTCTCAGCATAGGTACATAAGAATGAACTGGATTCTGTCAGAAGTCTTGTaGTCTGGGCAGGCAGCAAAT | + |
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Preference number: 4 (lower is better) Translates to: LASYWHDSQHRYIRMNWILSEVL*SGQAAN Trigger: ATTTGCTGCCTGCCCAGAGCACAAGACTTCTGACAG...AATCCAGTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGCCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS-3UTR TCA 90 bp | GCTTCTTATTGGCACGATTCTCAGCATAGGTACATAAGAATGAACTGGATTCTTGCAACTTCATTTCTCTaGGGTCAACTTGAGCTCCAA | + |
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Preference number: 4 (lower is better) Translates to: ASYWHDSQHRYIRMNWILATSFL*GQLELQ Trigger: TTGGAGCTCAAGTTGACCTCAGAGAAATGAAGTTGC...AAGAATCCAGTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS-3UTR TCA 90 bp | GCTTCTTATTGGCACGATTCTCAGCATAGGTACATAAGAATGAACTGGATTCTTCCCTCCTGGATACCATaGGACATGAATACAAGGAAA | + |
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Preference number: 4 (lower is better) Translates to: ASYWHDSQHRYIRMNWILPSWIP*DMNTRK Trigger: TTTCCTTGTATTCATGTCTCATGGTATCCAGGAGGG...AAGAATCCAGTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS-3UTR GCA 90 bp | GCTTCTTATTGGCACGATTCTCAGCATAGGTACATAAGAATGAACTGGATTCTTAAATTGCTTCCTCTTTaGCCTCAGGATCTTGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: ASYWHDSQHRYIRMNWILKLLPL*PQDLVS Trigger: GCTGACAAGATCCTGAGGGCAAAGAGGAAGCAATTT...AAGAATCCAGTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS-3UTR GCA 90 bp | TTGGCTTCTTATTGGCACGATTCTCAGCATAGGTACATAAGAATGAACTGGATTAAGCTCCAGAATTCCTaGCAGGTAGCAGTCTTCATT | + |
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Preference number: 4 (lower is better) Translates to: LASYWHDSQHRYIRMNWIKLQNS*QVAVFI Trigger: AATGAAGACTGCTACCTGGCAGGAATTCTGGAGCTT...AATCCAGTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGCCAA 41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS-3UTR CCA 90 bp | GCTTCTTATTGGCACGATTCTCAGCATAGGTACATAAGAATGAACTGGATTCTTAGAAGTCTTGTGCTCTaGGCAGGCAGCAAATTCTTT | + |
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Preference number: 4 (lower is better) Translates to: ASYWHDSQHRYIRMNWILRSLVL*AGSKFF Trigger: AAAGAATTTGCTGCCTGCCCAGAGCACAAGACTTCT...AAGAATCCAGTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS-3UTR TCA 90 bp | GCTTCTTATTGGCACGATTCTCAGCATAGGTACATAAGAATGAACTGGATTCTTCTCGGAGAAAGATGTTaGAACTCTGTGTTGCAGATA | + |
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Preference number: 4 (lower is better) Translates to: ASYWHDSQHRYIRMNWILLGERC*NSVLQI Trigger: TATCTGCAACACAGAGTTTCAACATCTTTCTCCGAG...AAGAATCCAGTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS-3UTR TCA 90 bp | TTGGCTTCTTATTGGCACGATTCTCAGCATAGGTACATAAGAATGAACTGGATTCCATCTCCAGAGCTGTaGGATTTTCTTTCACTTTCA | + |
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Preference number: 4 (lower is better) Translates to: LASYWHDSQHRYIRMNWIPSPEL*DFLSLS Trigger: TGAAAGTGAAAGAAAATCTCACAGCTCTGGAGATGG...AATCCAGTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGCCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS-3UTR GCA 90 bp | GCTTCTTATTGGCACGATTCTCAGCATAGGTACATAAGAATGAACTGGATTCTTACTGAGTTGATAAATTaGTTCCTCTTTGCCCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: ASYWHDSQHRYIRMNWILTELIN*FLFALR Trigger: CCTGAGGGCAAAGAGGAAGCAATTTATCAACTCAGT...AAGAATCCAGTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS-3UTR GCA 90 bp | TTGGCTTCTTATTGGCACGATTCTCAGCATAGGTACATAAGAATGAACTGGATTTTTCTCTCCACGGCATaGCTGAATAATGATCACCTT | + |
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Preference number: 4 (lower is better) Translates to: LASYWHDSQHRYIRMNWIFLSTA*LNNDHL Trigger: AAGGTGATCATTATTCAGGCATGCCGTGGAGAGAAA...AATCCAGTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGCCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS-3UTR GCA 90 bp | GGTTGTTCAAATGAAAATCGAACCTTTCTGAAAATGTCCTCCAAGTCACAAGACTTTCTCTCCACGGCATaGCTGAATAATGATCACCTT | + |
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Preference number: 4 (lower is better) Translates to: GCSNENRTFLKMSSKSQDFLSTA*LNNDHL Trigger: AAGGTGATCATTATTCAGGCATGCCGTGGAGAGAAA...GTCTTGTGACTTGGAGGACATTTTCAGAAAGGTTCGATTTTCATTTGAACAACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238730.2 |
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| CDS-3UTR GCA 90 bp | GCTTCTTATTGGCACGATTCTCAGCATAGGTACATAAGAATGAACTGGATTCTTTCAGTCCTGGAAATGTaGCATCTTCTTTGTTCTGTT | + |
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Preference number: 4 (lower is better) Translates to: ASYWHDSQHRYIRMNWILSVLEM*HLLCSV Trigger: AACAGAACAAAGAAGATGGCACATTTCCAGGACTGA...AAGAATCCAGTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS-3UTR CCA 90 bp | TTGGCTTCTTATTGGCACGATTCTCAGCATAGGTACATAAGAATGAACTGGATTCTTGTCTTTCAAGCTTaGGCACTTCAAAGTGTTCAT | + |
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Preference number: 4 (lower is better) Translates to: LASYWHDSQHRYIRMNWILVFQA*ALQSVH Trigger: ATGAACACTTTGAAGTGCCCAAGCTTGAAAGACAAG...AATCCAGTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGCCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS-3UTR CCA 90 bp | GCTTCTTATTGGCACGATTCTCAGCATAGGTACATAAGAATGAACTGGATTCTTTCTTTCCATAACTTCTaGGCTTTTTCTAAAGGGCAA | + |
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Preference number: 4 (lower is better) Translates to: ASYWHDSQHRYIRMNWILSFHNF*AFSKGQ Trigger: TTGCCCTTTAGAAAAAGCCCAGAAGTTATGGAAAGA...AAGAATCCAGTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS-3UTR CCA 90 bp | TTGGCTTCTTATTGGCACGATTCTCAGCATAGGTACATAAGAATGAACTGGATTCAAGACGTGTACGAGTaGTTGTATTCATTATTGGAT | + |
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Preference number: 4 (lower is better) Translates to: LASYWHDSQHRYIRMNWIQDVYE*LYSLLD Trigger: ATCCAATAATGAATACAACCACTCGTACACGTCTTG...AATCCAGTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGCCAA 38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS-3UTR CCA 90 bp | GCTTCTTATTGGCACGATTCTCAGCATAGGTACATAAGAATGAACTGGATTCTTAAATCTTTCTCTATATaGGCCTTCTTAATGCCATCA | + |
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Preference number: 4 (lower is better) Translates to: ASYWHDSQHRYIRMNWILKSFSI*AFLMPS Trigger: TGATGGCATTAAGAAGGCCCATATAGAGAAAGATTT...AAGAATCCAGTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS-3UTR CAA 90 bp | TGTTTGATGAGTGACTCAATGAAAAGTGAGCCCCTGACAGGATGTCTCCAAGACTCATTGTCAGAAGTCTaGTGCTCTGGGCAGGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: CLMSDSMKSEPLTGCLQDSLSEV*CSGQAA Trigger: TGCTGCCTGCCCAGAGCACAAGACTTCTGACAATGA...GTCTTGGAGACATCCTGTCAGGGGCTCACTTTTCATTGAGTCACTCATCAAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000238730.2 |
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| CDS-3UTR CAA 90 bp | TTGGCTTCTTATTGGCACGATTCTCAGCATAGGTACATAAGAATGAACTGGATTGTAAGTGATAAAGATTaGGCTTGCCTGGGGCCCTTT | + |
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Preference number: 5 (lower is better) Translates to: LASYWHDSQHRYIRMNWIVSDKD*ACLGPF Trigger: AAAGGGCCCCAGGCAAGCCAAATCTTTATCACTTAC...AATCCAGTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGCCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS-3UTR CAA 90 bp | GCTTCTTATTGGCACGATTCTCAGCATAGGTACATAAGAATGAACTGGATTCTTCCTCGGAGAAAGATGTaGAAACTCTGTGTTGCAGAT | + |
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Preference number: 5 (lower is better) Translates to: ASYWHDSQHRYIRMNWILPRRKM*KLCVAD Trigger: ATCTGCAACACAGAGTTTCAACATCTTTCTCCGAGG...AAGAATCCAGTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS-3UTR CAA 90 bp | GCTTCTTATTGGCACGATTCTCAGCATAGGTACATAAGAATGAACTGGATTCTTCCAACAATCCATTTATaGTCCCTATACTCACTGAGT | + |
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Preference number: 5 (lower is better) Translates to: ASYWHDSQHRYIRMNWILPTIHL*SLYSLS Trigger: ACTCAGTGAGTATAGGGACAATAAATGGATTGTTGG...AAGAATCCAGTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS-3UTR CAA 90 bp | TTGGCTTCTTATTGGCACGATTCTCAGCATAGGTACATAAGAATGAACTGGATTTGTTCTGTTCTTCCTTaGTTTCTGAGGATGAAGGAT | + |
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Preference number: 5 (lower is better) Translates to: LASYWHDSQHRYIRMNWICSVLP*FLRMKD Trigger: ATCCTTCATCCTCAGAAACAAAGGAAGAACAGAACA...AATCCAGTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGCCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS-3UTR CAA 90 bp | GCTTCTTATTGGCACGATTCTCAGCATAGGTACATAAGAATGAACTGGATTCTTCCTATACTCACTGAGTaGATAAATTGCTTCCTCTTT | + |
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Preference number: 5 (lower is better) Translates to: ASYWHDSQHRYIRMNWILPILTE*INCFLF Trigger: AAAGAGGAAGCAATTTATCAACTCAGTGAGTATAGG...AAGAATCCAGTTCATTCTTATGTACCTATGCTGAGAATCGTGCCAATAAGAAGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS CAA 90 bp | ATACCCCAGATCCTCCAGCAGCAACTTCATTTCTCTGAGGTCAACTaGAGCTCCAACCCTCGGAGAAAGATGTTGAAACTCTGTGTTGCA | + |
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Preference number: 6 (lower is better) Translates to: IPQILQQQLHFSEVN*SSNPRRKMLKLCVA Trigger: TGCAACACAGAGTTTCAACATCTTTCTCCGAGGGTTGGAGCTCAAGTTGACCTCAGAGAAATGAAGTTGCTGCTGGAGGATCTGGGGTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000027015.7 ENSMUST00000238730.2 |
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| CDS CAA 72 bp | ATCCTCCAGCAGCAACTTCATTTCTCTGAGGTCAACTaGAGCTCCAACCCTCGGAGAAAGATGTTGAAACTC | + |
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Preference number: 6 (lower is better) Translates to: ILQQQLHFSEVN*SSNPRRKMLKL Trigger: GAGTTTCAACATCTTTCTCCGAGGGTTGGAGCTCAAGTTGACCTCAGAGAAATGAAGTTGCTGCTGGAGGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000027015.7 ENSMUST00000238505.2 ENSMUST00000238730.2 |
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| CDS TCA 72 bp | GAGTATGTGGTCCCACATATTCCCTCCTGGATACCATaGGACATGAATACAAGGAAAGTACTGTCAGAAGTC | + |
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Preference number: 6 (lower is better) Translates to: EYVVPHIPSWIP*DMNTRKVLSEV Trigger: GACTTCTGACAGTACTTTCCTTGTATTCATGTCTCATGGTATCCAGGAGGGAATATGTGGGACCACATACTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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| CDS GCA 72 bp | GACATGAATACAAGGAAAGTACTGTCAGAAGTCTTGTaGTCTGGGCAGGCAGCAAATTCTTTCACCTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: DMNTRKVLSEVL*SGQAANSFTSF Trigger: GAAAGAGGTGAAAGAATTTGCTGCCTGCCCAGAGCACAAGACTTCTGACAGTACTTTCCTTGTATTCATGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027015.7 |
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