RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CASKIN2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034471

Ensembl transcript IDs: ENSMUST00000041684.11, ENSMUST00000156812.2

Found 214 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TACCTCACTGCCCGATCCCAGCCAGCGCTGCCTCCCAGTGTGGGATaGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCC +
Preference number: 1 (lower is better)
Translates to: YLTARSQPALPPSVG*PGRSRKGHRQEGMP
Trigger: GGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCCATCCCACACTGGGAGGCAGCGCTGGCTGGGATCGGGCAGTGAGGTA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR CCA 90 bp CGGAAGGATTCTCCAGCCCAACCAGACCTCTGCCTGTTCCCTGTGTaGCACGGGCTTCTTCCACGCTGGGCCGAGGGCGGTGAACACTGG +
Preference number: 1 (lower is better)
Translates to: RKDSPAQPDLCLFPV*HGLLPRWAEGGEHW
Trigger: CCAGTGTTCACCGCCCTCGGCCCAGCGTGGAAGAAGCCCGTGCCACACAGGGAACAGGCAGAGGTCTGGTTGGGCTGGAGAATCCTTCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR CCA 90 bp TCTGTTACCTCACTGCCCGATCCCAGCCAGCGCTGCCTCCCAGTGTaGGATGGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCA +
Preference number: 1 (lower is better)
Translates to: SVTSLPDPSQRCLPV*DGQAGAEKATGRKA
Trigger: TGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCCATCCCACACTGGGAGGCAGCGCTGGCTGGGATCGGGCAGTGAGGTAACAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR GCA 90 bp ATGTACAGTTGTAAGAGTCTGGGCCCTGGGGATCTGTTACCTCACTaGCCGATCCCAGCCAGCGCTGCCTCCCAGTGTGGGATGGCCAGG +
Preference number: 1 (lower is better)
Translates to: MYSCKSLGPGDLLPH*PIPASAASQCGMAR
Trigger: CCTGGCCATCCCACACTGGGAGGCAGCGCTGGCTGGGATCGGGCAGTGAGGTAACAGATCCCCAGGGCCCAGACTCTTACAACTGTACAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR CCA 90 bp GGACTGGCCAACCACGCAGCCTCACAGAGCCCTAGGGTGACTCAGTaGTGGCCAGACAAATTCCCAGACCACAGGGACTTTAGACAAGGC +
Preference number: 1 (lower is better)
Translates to: GLANHAASQSPRVTQ*WPDKFPDHRDFRQG
Trigger: GCCTTGTCTAAAGTCCCTGTGGTCTGGGAATTTGTCTGGCCACCACTGAGTCACCCTAGGGCTCTGTGAGGCTGCGTGGTTGGCCAGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR GCA 90 bp CAGGTTCTGACAAGTCCTCTCGGCCTGTCTGTGACTGCCAGCCACTaGTTGAAGCCATTGGAGGCCTCTGCTACGGAAGGATTCTCCAGC +
Preference number: 1 (lower is better)
Translates to: QVLTSPLGLSVTASH*LKPLEASATEGFSS
Trigger: GCTGGAGAATCCTTCCGTAGCAGAGGCCTCCAATGGCTTCAAGCAGTGGCTGGCAGTCACAGACAGGCCGAGAGGACTTGTCAGAACCTG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR CCA 90 bp CTGGCCAACCACGCAGCCTCACAGAGCCCTAGGGTGACTCAGTGGTaGCCAGACAAATTCCCAGACCACAGGGACTTTAGACAAGGCAAG +
Preference number: 1 (lower is better)
Translates to: LANHAASQSPRVTQW*PDKFPDHRDFRQGK
Trigger: CTTGCCTTGTCTAAAGTCCCTGTGGTCTGGGAATTTGTCTGGCCACCACTGAGTCACCCTAGGGCTCTGTGAGGCTGCGTGGTTGGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR-3UTR CCA 90 bp GATGGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCTGTTTGCACGGAGGGGACTaGCCAACCACGCAGCCTCAC +
Preference number: 2 (lower is better)
Translates to: DGQAGAEKATGRKACPCCLHGGD*PTTQPH
Trigger: GTGAGGCTGCGTGGTTGGCCAGTCCCCTCCGTGCAA...ACAGCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCCATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR-3UTR TCA 90 bp GATCTGTTACCTCACTGCCCGATCCCAGCCAGCGCTGCCTCCCAGTGTGGGATGTCGCTCCCACACAGCTaGGGCCCCTCAGTCAGGTTC +
Preference number: 2 (lower is better)
Translates to: DLLPHCPIPASAASQCGMSLPHS*GPSVRF
Trigger: GAACCTGACTGAGGGGCCTCAGCTGTGTGGGAGCGA...CATCCCACACTGGGAGGCAGCGCTGGCTGGGATCGGGCAGTGAGGTAACAGATC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR-3UTR TCA 90 bp GCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTATCACAGAGCCCTAGGGTaGCTCAGTGGTGGCCAGACA +
Preference number: 2 (lower is better)
Translates to: ARQEQKRPPAGRHAPAVYHRALG*LSGGQT
Trigger: TGTCTGGCCACCACTGAGTCACCCTAGGGCTCTGTG...ATACACAGCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR-3UTR TCA 90 bp GCAGGAAGGCATGCCCCTGCTGTGTATTTACAGCTCCTATGTACACTTGCACGGCTGGGCCGAGGGCGGTaGACACTGGCAGGTGGGAGA +
Preference number: 2 (lower is better)
Translates to: AGRHAPAVYLQLLCTLARLGRGR*TLAGGR
Trigger: TCTCCCACCTGCCAGTGTTCACCGCCCTCGGCCCAG...CCGTGCAAGTGTACATAGGAGCTGTAAATACACAGCAGGGGCATGCCTTCCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR-3UTR GCA 90 bp GGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTAGACAAGGCAAGGAGGTaGATCCCCAAATCCCTGTCA +
Preference number: 2 (lower is better)
Translates to: GQAGAEKATGRKACPCCVDKARR*IPKSLS
Trigger: TGACAGGGATTTGGGGATGCACCTCCTTGCCTTGTC...TACACAGCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR CAA 90 bp AGTCCTCTCGGCCTGTCTGTGACTGCCAGCCACTGCTTGAAGCCATaGGAGGCCTCTGCTACGGAAGGATTCTCCAGCCCAACCAGACCT +
Preference number: 2 (lower is better)
Translates to: SPLGLSVTASHCLKP*EASATEGFSSPTRP
Trigger: AGGTCTGGTTGGGCTGGAGAATCCTTCCGTAGCAGAGGCCTCCAATGGCTTCAAGCAGTGGCTGGCAGTCACAGACAGGCCGAGAGGACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR-3UTR CCA 90 bp CCCTGCTGTGTATTTACAGCTCCTATGTACACTTGCACGGAGGGGACTGGCCAAGGGCTTCTTCCACGCTaGGCCGAGGGCGGTGAACAC +
Preference number: 2 (lower is better)
Translates to: PCCVFTAPMYTCTEGTGQGLLPR*AEGGEH
Trigger: GTGTTCACCGCCCTCGGCCCAGCGTGGAAGAAGCCC...TTGGCCAGTCCCCTCCGTGCAAGTGTACATAGGAGCTGTAAATACACAGCAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR CAA 90 bp GTTCTGACAAGTCCTCTCGGCCTGTCTGTGACTGCCAGCCACTGCTaGAAGCCATTGGAGGCCTCTGCTACGGAAGGATTCTCCAGCCCA +
Preference number: 2 (lower is better)
Translates to: VLTSPLGLSVTASHC*KPLEASATEGFSSP
Trigger: TGGGCTGGAGAATCCTTCCGTAGCAGAGGCCTCCAATGGCTTCAAGCAGTGGCTGGCAGTCACAGACAGGCCGAGAGGACTTGTCAGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR-3UTR GCA 90 bp GGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTATTTACAGCTCCTATGTACACGTGACTGCCAGCCACTaGTTGAAGCCATTGGAGGCC +
Preference number: 2 (lower is better)
Translates to: GHRQEGMPLLCIYSSYVHVTASH*LKPLEA
Trigger: GGCCTCCAATGGCTTCAAGCAGTGGCTGGCAGTCAC...GTGTACATAGGAGCTGTAAATACACAGCAGGGGCATGCCTTCCTGCCGGTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR-3UTR CCA 90 bp GCAGGAAGGCATGCCCCTGCTGTGTATTTACAGCTCCTATGTACACTTGCACGGAGGGTGACTCAGTGGTaGCCAGACAAATTCCCAGAC +
Preference number: 2 (lower is better)
Translates to: AGRHAPAVYLQLLCTLARRVTQW*PDKFPD
Trigger: GTCTGGGAATTTGTCTGGCCACCACTGAGTCACCCT...CCGTGCAAGTGTACATAGGAGCTGTAAATACACAGCAGGGGCATGCCTTCCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR-3UTR CCA 90 bp GTTAGTTGGGGAAAGAGGTTAATAGTTACAGAGCCCAGGCTAGACCAACTGGGTGTGAACACTGGCAGGTaGGAGAGTCACAGGCCAAGG +
Preference number: 2 (lower is better)
Translates to: VSWGKRLIVTEPRLDQLGVNTGR*ESHRPR
Trigger: CCTTGGCCTGTGACTCTCCCACCTGCCAGTGTTCAC...ACCCAGTTGGTCTAGCCTGGGCTCTGTAACTATTAACCTCTTTCCCCAACTAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR CCA 72 bp GCCCGATCCCAGCCAGCGCTGCCTCCCAGTGTGGGATaGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAA +
Preference number: 3 (lower is better)
Translates to: ARSQPALPPSVG*PGRSRKGHRQE
Trigger: TTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCCATCCCACACTGGGAGGCAGCGCTGGCTGGGATCGGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR CCA 72 bp TCACTGCCCGATCCCAGCCAGCGCTGCCTCCCAGTGTaGGATGGCCAGGCAGGAGCAGAAAAGGCCACCGGC +
Preference number: 3 (lower is better)
Translates to: SLPDPSQRCLPV*DGQAGAEKATG
Trigger: GCCGGTGGCCTTTTCTGCTCCTGCCTGGCCATCCCACACTGGGAGGCAGCGCTGGCTGGGATCGGGCAGTGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR TCA 72 bp GTGGCACGGGCTTCTTCCACGCTGGGCCGAGGGCGGTaGACACTGGCAGGTGGGAGAGTCACAGGCCAAGGT +
Preference number: 3 (lower is better)
Translates to: VARASSTLGRGR*TLAGGRVTGQG
Trigger: ACCTTGGCCTGTGACTCTCCCACCTGCCAGTGTTCACCGCCCTCGGCCCAGCGTGGAAGAAGCCCGTGCCAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR CCA 72 bp TGCCTGTTCCCTGTGTGGCACGGGCTTCTTCCACGCTaGGCCGAGGGCGGTGAACACTGGCAGGTGGGAGAG +
Preference number: 3 (lower is better)
Translates to: CLFPVWHGLLPR*AEGGEHWQVGE
Trigger: CTCTCCCACCTGCCAGTGTTCACCGCCCTCGGCCCAGCGTGGAAGAAGCCCGTGCCACACAGGGAACAGGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR CCA 72 bp TCTCCAGCCCAACCAGACCTCTGCCTGTTCCCTGTGTaGCACGGGCTTCTTCCACGCTGGGCCGAGGGCGGT +
Preference number: 3 (lower is better)
Translates to: SPAQPDLCLFPV*HGLLPRWAEGG
Trigger: ACCGCCCTCGGCCCAGCGTGGAAGAAGCCCGTGCCACACAGGGAACAGGCAGAGGTCTGGTTGGGCTGGAGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR GCA 72 bp TGTAAGAGTCTGGGCCCTGGGGATCTGTTACCTCACTaGCCGATCCCAGCCAGCGCTGCCTCCCAGTGTGGG +
Preference number: 3 (lower is better)
Translates to: CKSLGPGDLLPH*PIPASAASQCG
Trigger: CCCACACTGGGAGGCAGCGCTGGCTGGGATCGGGCAGTGAGGTAACAGATCCCCAGGGCCCAGACTCTTACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR GCA 72 bp CTGCTACGGAAGGATTCTCCAGCCCAACCAGACCTCTaGCTGTTCCCTGTGTGGCACGGGCTTCTTCCACGC +
Preference number: 3 (lower is better)
Translates to: LLRKDSPAQPDL*LFPVWHGLLPR
Trigger: GCGTGGAAGAAGCCCGTGCCACACAGGGAACAGGCAGAGGTCTGGTTGGGCTGGAGAATCCTTCCGTAGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR TCA 72 bp GACTGGCCAACCACGCAGCCTCACAGAGCCCTAGGGTaGCTCAGTGGTGGCCAGACAAATTCCCAGACCACA +
Preference number: 3 (lower is better)
Translates to: DWPTTQPHRALG*LSGGQTNSQTT
Trigger: TGTGGTCTGGGAATTTGTCTGGCCACCACTGAGTCACCCTAGGGCTCTGTGAGGCTGCGTGGTTGGCCAGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR GCA 72 bp ACAAGTCCTCTCGGCCTGTCTGTGACTGCCAGCCACTaGTTGAAGCCATTGGAGGCCTCTGCTACGGAAGGA +
Preference number: 3 (lower is better)
Translates to: TSPLGLSVTASH*LKPLEASATEG
Trigger: TCCTTCCGTAGCAGAGGCCTCCAATGGCTTCAAGCAGTGGCTGGCAGTCACAGACAGGCCGAGAGGACTTGT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR GCA 72 bp TGCCCCTGCTGTGTATTTACAGCTCCTATGTACACTTaGACGGAGGGGACTGGCCAACCACGCAGCCTCACA +
Preference number: 3 (lower is better)
Translates to: CPCCVFTAPMYT*TEGTGQPRSLT
Trigger: TGTGAGGCTGCGTGGTTGGCCAGTCCCCTCCGTGCAAGTGTACATAGGAGCTGTAAATACACAGCAGGGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR-3UTR CAA 90 bp GCAGGAAGGCATGCCCCTGCTGTGTATTTACAGCTCCTATGTACACTTGCACGGCACTGCTTGAAGCCATaGGAGGCCTCTGCTACGGAA +
Preference number: 3 (lower is better)
Translates to: AGRHAPAVYLQLLCTLARHCLKP*EASATE
Trigger: TTCCGTAGCAGAGGCCTCCAATGGCTTCAAGCAGTG...CCGTGCAAGTGTACATAGGAGCTGTAAATACACAGCAGGGGCATGCCTTCCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR-3UTR CAA 90 bp AGGGTGACTCAGTGGTGGCCAGACAAATTCCCAGACCACAGGGACTTTAGACAAACTGCCAGCCACTGCTaGAAGCCATTGGAGGCCTCT +
Preference number: 3 (lower is better)
Translates to: RVTQWWPDKFPDHRDFRQTASHC*KPLEAS
Trigger: AGAGGCCTCCAATGGCTTCAAGCAGTGGCTGGCAGT...TTGTCTAAAGTCCCTGTGGTCTGGGAATTTGTCTGGCCACCACTGAGTCACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR TCA 90 bp GCTCCCACACAGCTGAGGCCCCTCAGTCAGGTTCTGACAAGTCCTCTCGGCCTGGGGCGGCTCAAGCTGTaGGACCGGCGCTTCGGCCGA +
Preference number: 4 (lower is better)
Translates to: APTQLRPLSQVLTSPLGLGRLKL*DRRFGR
Trigger: TCGGCCGAAGCGCCGGTCTCACAGCTTGAGCCGCCC...CAGGCCGAGAGGACTTGTCAGAACCTGACTGAGGGGCCTCAGCTGTGTGGGAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp GGATGGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCTGCAGAGCTCTGCCCGCTaGCAGCACTGCGGATGCTGC +
Preference number: 4 (lower is better)
Translates to: GWPGRSRKGHRQEGMPLLQSSAR*QHCGCC
Trigger: GCAGCATCCGCAGTGCTGGCAGCGGGCAGAGCTCTG...CAGCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCCATCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp TGGGATGGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCTACTGCGCAGCCAGGTaGAGGGGGATCTGCCCATCC +
Preference number: 4 (lower is better)
Translates to: WDGQAGAEKATGRKACPCYCAAR*RGICPS
Trigger: GGATGGGCAGATCCCCCTGCACCTGGCTGCGCAGTA...GCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCCATCCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp TGTTACCTCACTGCCCGATCCCAGCCAGCGCTGCCTCCCAGTGTGGGATGGCCACAGCACTGCGGATGCTaGCCACGCTACCCTCGCTGC +
Preference number: 4 (lower is better)
Translates to: CYLTARSQPALPPSVGWPQHCGC*PRYPRC
Trigger: GCAGCGAGGGTAGCGTGGGCAGCATCCGCAGTGCTG...TGGCCATCCCACACTGGGAGGCAGCGCTGGCTGGGATCGGGCAGTGAGGTAACA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp TGTTACCTCACTGCCCGATCCCAGCCAGCGCTGCCTCCCAGTGTGGGATGGCCATGCCAGCACTGCGGATaGTGCCCACGCTACCCTCGC +
Preference number: 4 (lower is better)
Translates to: CYLTARSQPALPPSVGWPCQHCG*CPRYPR
Trigger: GCGAGGGTAGCGTGGGCAGCATCCGCAGTGCTGGCA...TGGCCATCCCACACTGGGAGGCAGCGCTGGCTGGGATCGGGCAGTGAGGTAACA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp GGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTAGCTCAGGTTGTCTGCTaGGGACGGGGCATGCAGGCC +
Preference number: 4 (lower is better)
Translates to: GQAGAEKATGRKACPCCVAQVVC*GRGMQA
Trigger: GGCCTGCATGCCCCGTCCCCAGCAGACAACCTGAGC...TACACAGCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp GGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTAAGCCACCCCCTGCCATaGCTGCCTGTAGCTCTGGGC +
Preference number: 4 (lower is better)
Translates to: GQAGAEKATGRKACPCCVSHPLP*LPVALG
Trigger: GCCCAGAGCTACAGGCAGCCATGGCAGGGGGTGGCT...TACACAGCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp GGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTACCGCTGCTCACCAGCTaGTTGTGGTACTGCGGCAGC +
Preference number: 4 (lower is better)
Translates to: GQAGAEKATGRKACPCCVPLLTS*LWYCGS
Trigger: GCTGCCGCAGTACCACAAGCAGCTGGTGAGCAGCGG...TACACAGCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp GCTCCCACACAGCTGAGGCCCCTCAGTCAGGTTCTGACAAGTCCTCTCGGCCTGAGGCCTGGCAGTCCCTaGTCCTCACTGGCAGAGGGC +
Preference number: 4 (lower is better)
Translates to: APTQLRPLSQVLTSPLGLRPGSP*SSLAEG
Trigger: GCCCTCTGCCAGTGAGGACCAGGGACTGCCAGGCCT...CAGGCCGAGAGGACTTGTCAGAACCTGACTGAGGGGCCTCAGCTGTGTGGGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp GGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTATTTACAGCTCCTATGTACACCGGCCGAGGTGGGTCTaGAGGAGCGGCCGGAGAGCC +
Preference number: 4 (lower is better)
Translates to: GHRQEGMPLLCIYSSYVHRPRWV*RSGRRA
Trigger: GGCTCTCCGGCCGCTCCTCCAGACCCACCTCGGCCG...GTGTACATAGGAGCTGTAAATACACAGCAGGGGCATGCCTTCCTGCCGGTGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR TCA 90 bp CACCTCCTCCTAGAGGAGAATGTTCTACGAGGGTCCCTGTTCAGGGGCCATAGCTGGCAGGCCTTCCCCTaGGCTGCCCCGAGATGGGGG +
Preference number: 4 (lower is better)
Translates to: HLLLEENVLRGSLFRGHSWQAFP*AAPRWG
Trigger: CCCCCATCTCGGGGCAGCTCAGGGGAAGGCCTGCCA...GCTATGGCCCCTGAACAGGGACCCTCGTAGAACATTCTCCTCTAGGAGGAGGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp TGTTACCTCACTGCCCGATCCCAGCCAGCGCTGCCTCCCAGTGTGGGATGGCCACCACGCTACCCTCGCTaGCCACGCTATTCCTGTCAC +
Preference number: 4 (lower is better)
Translates to: CYLTARSQPALPPSVGWPPRYPR*PRYSCH
Trigger: GTGACAGGAATAGCGTGGGCAGCGAGGGTAGCGTGG...TGGCCATCCCACACTGGGAGGCAGCGCTGGCTGGGATCGGGCAGTGAGGTAACA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp GCTCCCACACAGCTGAGGCCCCTCAGTCAGGTTCTGACAAGTCCTCTCGGCCTGAACTGCCCAGGGCACTaGCCACTGGCCCTTCAGCCT +
Preference number: 4 (lower is better)
Translates to: APTQLRPLSQVLTSPLGLNCPGH*PLALQP
Trigger: AGGCTGAAGGGCCAGTGGGCAGTGCCCTGGGCAGTT...CAGGCCGAGAGGACTTGTCAGAACCTGACTGAGGGGCCTCAGCTGTGTGGGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp CACACAGCTGAGGCCCCTCAGTCAGGTTCTGACAAGTCCTCTCGGCCTGTCTGTCCGGCCAGAGGGCGGTaGCTCAGGTTGTCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: HTAEAPQSGSDKSSRPVCPARGR*LRLSAG
Trigger: CCCAGCAGACAACCTGAGCCACCGCCCTCTGGCCGG...ACAGACAGGCCGAGAGGACTTGTCAGAACCTGACTGAGGGGCCTCAGCTGTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp TGTTACCTCACTGCCCGATCCCAGCCAGCGCTGCCTCCCAGTGTGGGATGGCCACTCACCAGCTGCTTGTaGTACTGCGGCAGCCCCAGT +
Preference number: 4 (lower is better)
Translates to: CYLTARSQPALPPSVGWPLTSCL*YCGSPS
Trigger: ACTGGGGCTGCCGCAGTACCACAAGCAGCTGGTGAG...TGGCCATCCCACACTGGGAGGCAGCGCTGGCTGGGATCGGGCAGTGAGGTAACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp TGGGATGGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCCTCCGAGGGGCCGGTTaGTTCACTCAGTGTTCTCCT +
Preference number: 4 (lower is better)
Translates to: WDGQAGAEKATGRKACPCLRGAG*FTQCSP
Trigger: AGGAGAACACTGAGTGAACCAACCGGCCCCTCGGAG...GCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCCATCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR TCA 90 bp GGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTATTTACAGCTCCTATGTACACTGCCCACCCGCTTGCTaGCCACCTCGACGATGCCCG +
Preference number: 4 (lower is better)
Translates to: GHRQEGMPLLCIYSSYVHCPPAC*PPRRCP
Trigger: CGGGCATCGTCGAGGTGGTCAGCAAGCGGGTGGGCA...GTGTACATAGGAGCTGTAAATACACAGCAGGGGCATGCCTTCCTGCCGGTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp GGGATCTGTTACCTCACTGCCCGATCCCAGCCAGCGCTGCCTCCCAGTGTGGGAGCACCACCTCAGTCTTaGCATACAGCGCAGCCTCGT +
Preference number: 4 (lower is better)
Translates to: GICYLTARSQPALPPSVGAPPQS*HTAQPR
Trigger: ACGAGGCTGCGCTGTATGGCAAGACTGAGGTGGTGC...TCCCACACTGGGAGGCAGCGCTGGCTGGGATCGGGCAGTGAGGTAACAGATCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp TGGGATGGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCAGCCAACACGGTCTGTaGCCCTTTGGCTCTCATGGA +
Preference number: 4 (lower is better)
Translates to: WDGQAGAEKATGRKACPCSQHGL*PFGSHG
Trigger: TCCATGAGAGCCAAAGGGGCACAGACCGTGTTGGCT...GCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCCATCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp TGGGATGGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCGTTCCTCGGTGCCAATaGTCTTCTCAGCTGCCCTCA +
Preference number: 4 (lower is better)
Translates to: WDGQAGAEKATGRKACPCVPRCQ*SSQLPS
Trigger: TGAGGGCAGCTGAGAAGAGCATTGGCACCGAGGAAC...GCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCCATCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp TGGGATGGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCCCCAAGGCAGCGTGGTaGAGAGCAGAGAATCCATCA +
Preference number: 4 (lower is better)
Translates to: WDGQAGAEKATGRKACPCPKAAW*RAENPS
Trigger: TGATGGATTCTCTGCTCTCCACCACGCTGCCTTGGG...GCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCCATCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp TGTTACCTCACTGCCCGATCCCAGCCAGCGCTGCCTCCCAGTGTGGGATGGCCAGTAGTTGGGGTCACATaGGTCCTTCGCCTCTCCCTC +
Preference number: 4 (lower is better)
Translates to: CYLTARSQPALPPSVGWPVVGVT*VLRLSL
Trigger: GAGGGAGAGGCGAAGGACCCATGTGACCCCAACTAC...TGGCCATCCCACACTGGGAGGCAGCGCTGGCTGGGATCGGGCAGTGAGGTAACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp GCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTATCCCCTTTGGCTCTCATaGATGTGGCCCTTCCAGCGG +
Preference number: 4 (lower is better)
Translates to: ARQEQKRPPAGRHAPAVYPLWLS*MWPFQR
Trigger: CCGCTGGAAGGGCCACATCCATGAGAGCCAAAGGGG...ATACACAGCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp GATGGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCTGTAGGGCCAGCTGTAGTTaGGCCTTCCCCATTCTCCAG +
Preference number: 4 (lower is better)
Translates to: DGQAGAEKATGRKACPCCRASCS*AFPILQ
Trigger: CTGGAGAATGGGGAAGGCCCAACTACAGCTGGCCCT...ACAGCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCCATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp CTCGGCCTGTCTGTGACTGCCAGCCACTGCTTGAAGCCATTGGAGGCCTCTGCTGGGTCACACGGGGCTTaGGTGGACAGGGGATTGGAG +
Preference number: 4 (lower is better)
Translates to: LGLSVTASHCLKPLEASAGSHGA*VDRGLE
Trigger: CTCCAATCCCCTGTCCACCCAAGCCCCGTGTGACCC...AGCAGAGGCCTCCAATGGCTTCAAGCAGTGGCTGGCAGTCACAGACAGGCCGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp ACACAGCTGAGGCCCCTCAGTCAGGTTCTGACAAGTCCTCTCGGCCTGTCTGTGTCCAGCACTGGGCCCTaGGTGCCCAGGGGACTGAGT +
Preference number: 4 (lower is better)
Translates to: TQLRPLSQVLTSPLGLSVSSTGP*VPRGLS
Trigger: ACTCAGTCCCCTGGGCACCCAGGGCCCAGTGCTGGA...CACAGACAGGCCGAGAGGACTTGTCAGAACCTGACTGAGGGGCCTCAGCTGTGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp AGCCCTAGGGTGACTCAGTGGTGGCCAGACAAATTCCCAGACCACAGGGACTTTCCTTGGAGGGGGTACTaGACGGGGACCGAGCCGGGG +
Preference number: 4 (lower is better)
Translates to: SPRVTQWWPDKFPDHRDFPWRGY*TGTEPG
Trigger: CCCCGGCTCGGTCCCCGTCCAGTACCCCCTCCAAGG...AAAGTCCCTGTGGTCTGGGAATTTGTCTGGCCACCACTGAGTCACCCTAGGGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR TCA 90 bp GCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTATGGGTGCCCAGGGGACTaGGTTACAGAGCTGAGAGAA +
Preference number: 4 (lower is better)
Translates to: ARQEQKRPPAGRHAPAVYGCPGD*VTELRE
Trigger: TTCTCTCAGCTCTGTAACTCAGTCCCCTGGGCACCC...ATACACAGCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp CACACAGCTGAGGCCCCTCAGTCAGGTTCTGACAAGTCCTCTCGGCCTGTCTGTCGCAGCCTCGTGGAGTaGGGTGCCTGTCTTGGTCTG +
Preference number: 4 (lower is better)
Translates to: HTAEAPQSGSDKSSRPVCRSLVE*GACLGL
Trigger: CAGACCAAGACAGGCACCGCACTCCACGAGGCTGCG...ACAGACAGGCCGAGAGGACTTGTCAGAACCTGACTGAGGGGCCTCAGCTGTGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp GCTCCCACACAGCTGAGGCCCCTCAGTCAGGTTCTGACAAGTCCTCTCGGCCTGTATGGGGCAGGTCCTTaGCCAGGGAGCGGAGAACAA +
Preference number: 4 (lower is better)
Translates to: APTQLRPLSQVLTSPLGLYGAGP*PGSGEQ
Trigger: TTGTTCTCCGCTCCCTGGCCAAGGACCTGCCCCATA...CAGGCCGAGAGGACTTGTCAGAACCTGACTGAGGGGCCTCAGCTGTGTGGGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp GGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTATTTACAGCTCCTATGTACACGGGAACACCAGGAGGTaGCCCTGGGGCTGGGCTAGA +
Preference number: 4 (lower is better)
Translates to: GHRQEGMPLLCIYSSYVHGNTRR*PWGWAR
Trigger: TCTAGCCCAGCCCCAGGGCCACCTCCTGGTGTTCCC...GTGTACATAGGAGCTGTAAATACACAGCAGGGGCATGCCTTCCTGCCGGTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp TTGGGGAAAGAGGTTAATAGTTACAGAGCCCAGGCTAGACCAACTGGGTCCTCCGCGCTTCGGCCGAGGTaGGTCTGGAGGAGCGGCCGG +
Preference number: 4 (lower is better)
Translates to: LGKEVNSYRAQARPTGSSALRPR*VWRSGR
Trigger: CCGGCCGCTCCTCCAGACCCACCTCGGCCGAAGCGC...GGAGGACCCAGTTGGTCTAGCCTGGGCTCTGTAACTATTAACCTCTTTCCCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR TCA 90 bp TGTTACCTCACTGCCCGATCCCAGCCAGCGCTGCCTCCCAGTGTGGGATGGCCATGCCATTGCTGTCCTTaGTGTCCACAGTGGCTTGAG +
Preference number: 4 (lower is better)
Translates to: CYLTARSQPALPPSVGWPCHCCP*CPQWLE
Trigger: CTCAAGCCACTGTGGACATCAAGGACAGCAATGGCA...TGGCCATCCCACACTGGGAGGCAGCGCTGGCTGGGATCGGGCAGTGAGGTAACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR TCA 90 bp GGATGGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCTGAGAGCGGTGGGGTCATaGAGGTTCCAGAAATCCTTA +
Preference number: 4 (lower is better)
Translates to: GWPGRSRKGHRQEGMPLLRAVGS*RFQKSL
Trigger: TAAGGATTTCTGGAACCTTCATGACCCCACCGCTCT...CAGCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCCATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR TCA 90 bp GGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTAGCTGAGAGAAGAGGCTaGAGTTCCTTGCGATGGAAG +
Preference number: 4 (lower is better)
Translates to: GQAGAEKATGRKACPCCVAERRG*SSLRWK
Trigger: CTTCCATCGCAAGGAACTTCAGCCTCTTCTCTCAGC...TACACAGCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR TCA 90 bp GCTCCCACACAGCTGAGGCCCCTCAGTCAGGTTCTGACAAGTCCTCTCGGCCTGTGCGGCTTCCAAGGATaGGCTGGTCTGTTCCAGTCT +
Preference number: 4 (lower is better)
Translates to: APTQLRPLSQVLTSPLGLCGFQG*AGLFQS
Trigger: AGACTGGAACAGACCAGCTCATCCTTGGAAGCCGCA...CAGGCCGAGAGGACTTGTCAGAACCTGACTGAGGGGCCTCAGCTGTGTGGGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp GTCAGCTGCTCACGGGGAGAGCTTCGCTCCCACACAGCTGAGGCCCCTCAGTCACGTGATGACATCTCCTaGTCGGACATTGAGAGCGGT +
Preference number: 4 (lower is better)
Translates to: VSCSRGELRSHTAEAPQSRDDIS*SDIESG
Trigger: ACCGCTCTCAATGTCCGAGCAGGAGATGTCATCACG...TGACTGAGGGGCCTCAGCTGTGTGGGAGCGAAGCTCTCCCCGTGAGCAGCTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp GGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTATTTACAGCTCCTATGTACACCTGCGGCAGCCCCAGTaGACACAGCCACTCCAGCAA +
Preference number: 4 (lower is better)
Translates to: GHRQEGMPLLCIYSSYVHLRQPQ*TQPLQQ
Trigger: TTGCTGGAGTGGCTGTGTGCACTGGGGCTGCCGCAG...GTGTACATAGGAGCTGTAAATACACAGCAGGGGCATGCCTTCCTGCCGGTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp CACCTCCTCCTAGAGGAGAATGTTCTACGAGGGTCCCTGTTCAGGGGCCATAGCCACAGGGCCAGTTGGTaGGGAAGGACCAGGGGACTC +
Preference number: 4 (lower is better)
Translates to: HLLLEENVLRGSLFRGHSHRASW*GRTRGL
Trigger: GAGTCCCCTGGTCCTTCCGCACCAACTGGCCCTGTG...GCTATGGCCCCTGAACAGGGACCCTCGTAGAACATTCTCCTCTAGGAGGAGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp GATGGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCTGTCCACATTGGGCTTACTaGCTGTGGAGTTTGCCAGAG +
Preference number: 4 (lower is better)
Translates to: DGQAGAEKATGRKACPCCPHWAY*LWSLPE
Trigger: CTCTGGCAAACTCCACAGGCAGTAAGCCCAATGTGG...ACAGCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp CACCTCCTCCTAGAGGAGAATGTTCTACGAGGGTCCCTGTTCAGGGGCCATAGCTATCCGGGAGAAGCTTaGTCGCAGAGGGGTGGGGGC +
Preference number: 4 (lower is better)
Translates to: HLLLEENVLRGSLFRGHSYPGEA*SQRGGG
Trigger: GCCCCCACCCCTCTGCGACCAAGCTTCTCCCGGATA...GCTATGGCCCCTGAACAGGGACCCTCGTAGAACATTCTCCTCTAGGAGGAGGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp GGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTATTTACAGCTCCTATGTACACCTGTGGCCCCTTCCTTaGGCCCCGAGGTTCCGTCTA +
Preference number: 4 (lower is better)
Translates to: GHRQEGMPLLCIYSSYVHLWPLP*APRFRL
Trigger: TAGACGGAACCTCGGGGCCCAAGGAAGGGGCCACAG...GTGTACATAGGAGCTGTAAATACACAGCAGGGGCATGCCTTCCTGCCGGTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp GGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTATTTACAGCTCCTATGTACACCGACACAGGGCCAGTTaGTGCGGAAGGACCAGGGGA +
Preference number: 4 (lower is better)
Translates to: GHRQEGMPLLCIYSSYVHRHRAS*CGRTRG
Trigger: TCCCCTGGTCCTTCCGCACCAACTGGCCCTGTGTCG...GTGTACATAGGAGCTGTAAATACACAGCAGGGGCATGCCTTCCTGCCGGTGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR TCA 90 bp CACACAGCTGAGGCCCCTCAGTCAGGTTCTGACAAGTCCTCTCGGCCTGTCTGTCTCCTGCTCGGACATTaGGAGCGGTGGGGTCATGAA +
Preference number: 4 (lower is better)
Translates to: HTAEAPQSGSDKSSRPVCLLLGH*ERWGHE
Trigger: TTCATGACCCCACCGCTCTCAATGTCCGAGCAGGAG...ACAGACAGGCCGAGAGGACTTGTCAGAACCTGACTGAGGGGCCTCAGCTGTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR TCA 90 bp AGGGTGACTCAGTGGTGGCCAGACAAATTCCCAGACCACAGGGACTTTAGACAACTGGACTGTCTGGGCTaGGGCCCACCCGAGGGAGCT +
Preference number: 4 (lower is better)
Translates to: RVTQWWPDKFPDHRDFRQLDCLG*GPPEGA
Trigger: AGCTCCCTCGGGTGGGCCTCAGCCCAGACAGTCCAG...TTGTCTAAAGTCCCTGTGGTCTGGGAATTTGTCTGGCCACCACTGAGTCACCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR TCA 90 bp GCAGGAAGGCATGCCCCTGCTGTGTATTTACAGCTCCTATGTACACTTGCACGGCACTGCCCTGAAAGGTaGGGAGGCGAGGGCCAGCTG +
Preference number: 4 (lower is better)
Translates to: AGRHAPAVYLQLLCTLARHCPER*GGEGQL
Trigger: CAGCTGGCCCTCGCCTCCTCACCTTTCAGGGCAGTG...CCGTGCAAGTGTACATAGGAGCTGTAAATACACAGCAGGGGCATGCCTTCCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR TCA 90 bp CCCTGCTGTGTATTTACAGCTCCTATGTACACTTGCACGGAGGGGACTGGCCAAGGCTGTTCCTGTGAGTaGCCAGAGCCCCGTGAGCGG +
Preference number: 4 (lower is better)
Translates to: PCCVFTAPMYTCTEGTGQGCSCE*PEPRER
Trigger: CCGCTCACGGGGCTCTGGTCACTCACAGGAACAGCC...TTGGCCAGTCCCCTCCGTGCAAGTGTACATAGGAGCTGTAAATACACAGCAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp GCAGGAAGGCATGCCCCTGCTGTGTATTTACAGCTCCTATGTACACTTGCACGGAGGTGCAGGGGGATCTaGCCATCCAGCGAGGCAGCG +
Preference number: 4 (lower is better)
Translates to: AGRHAPAVYLQLLCTLARRCRGI*PSSEAA
Trigger: CGCTGCCTCGCTGGATGGGCAGATCCCCCTGCACCT...CCGTGCAAGTGTACATAGGAGCTGTAAATACACAGCAGGGGCATGCCTTCCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp CCCTGCTGTGTATTTACAGCTCCTATGTACACTTGCACGGAGGGGACTGGCCAAGTGCCTTCAGAGCTCTaGCCGCTGCCAGCACTGCGG +
Preference number: 4 (lower is better)
Translates to: PCCVFTAPMYTCTEGTGQVPSEL*PLPALR
Trigger: CCGCAGTGCTGGCAGCGGGCAGAGCTCTGAAGGCAC...TTGGCCAGTCCCCTCCGTGCAAGTGTACATAGGAGCTGTAAATACACAGCAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp AGCCCTAGGGTGACTCAGTGGTGGCCAGACAAATTCCCAGACCACAGGGACTTTTGCCATGGCCGTTGGTaGCTTCAGAGCTCTGCCCGC +
Preference number: 4 (lower is better)
Translates to: SPRVTQWWPDKFPDHRDFCHGRW*LQSSAR
Trigger: GCGGGCAGAGCTCTGAAGGCACCAACGGCCATGGCA...AAAGTCCCTGTGGTCTGGGAATTTGTCTGGCCACCACTGAGTCACCCTAGGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp ACAAATTCCCAGACCACAGGGACTTTAGACAAGGCAAGGAGGTGCATCCCCAAAGCTGGGGACGGGGCATaGAGGCCTGGCAGTCCCTGG +
Preference number: 4 (lower is better)
Translates to: TNSQTTGTLDKARRCIPKAGDGA*RPGSPW
Trigger: CCAGGGACTGCCAGGCCTGCATGCCCCGTCCCCAGC...TTTGGGGATGCACCTCCTTGCCTTGTCTAAAGTCCCTGTGGTCTGGGAATTTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp GATGGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCTGTATTAGCTTCTTCTGGTaGCCCAGCTTGTTCACGCCT +
Preference number: 4 (lower is better)
Translates to: DGQAGAEKATGRKACPCCISFFW*PSLFTP
Trigger: AGGCGTGAACAAGCTGGGGCACCAGAAGAAGCTAAT...ACAGCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp GCAGGAAGGCATGCCCCTGCTGTGTATTTACAGCTCCTATGTACACTTGCACGGCCCAGGGCTTCTCCATaGAGCAGGCCCCGCCGAAGT +
Preference number: 4 (lower is better)
Translates to: AGRHAPAVYLQLLCTLARPRASP*SRPRRS
Trigger: ACTTCGGCGGGGCCTGCTGCATGGAGAAGCCCTGGG...CCGTGCAAGTGTACATAGGAGCTGTAAATACACAGCAGGGGCATGCCTTCCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp GCAGGAAGGCATGCCCCTGCTGTGTATTTACAGCTCCTATGTACACTTGCACGGGGCCTTCCCCTGAGCTaGCCCGAGATGGGGGTGTTC +
Preference number: 4 (lower is better)
Translates to: AGRHAPAVYLQLLCTLARGLPLS*PEMGVF
Trigger: GAACACCCCCATCTCGGGGCAGCTCAGGGGAAGGCC...CCGTGCAAGTGTACATAGGAGCTGTAAATACACAGCAGGGGCATGCCTTCCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp GATGGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTGCCTGTCTTGGTCTaGCGGTTGATCTCAATACCA +
Preference number: 4 (lower is better)
Translates to: DGQAGAEKATGRKACPCCVPVLV*RLISIP
Trigger: TGGTATTGAGATCAACCGCCAGACCAAGACAGGCAC...ACAGCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp GGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTATTTACAGCTCCTATGTACACCGGTCTGTGCCCCTTTaGCTCTCATGGATGTGGCCC +
Preference number: 4 (lower is better)
Translates to: GHRQEGMPLLCIYSSYVHRSVPL*LSWMWP
Trigger: GGGCCACATCCATGAGAGCCAAAGGGGCACAGACCG...GTGTACATAGGAGCTGTAAATACACAGCAGGGGCATGCCTTCCTGCCGGTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp CCCTGCTGTGTATTTACAGCTCCTATGTACACTTGCACGGAGGGGACTGGCCAACGGGGCATGCAGGCCTaGCAGTCCCTGGTCCTCACT +
Preference number: 4 (lower is better)
Translates to: PCCVFTAPMYTCTEGTGQRGMQA*QSLVLT
Trigger: AGTGAGGACCAGGGACTGCCAGGCCTGCATGCCCCG...TTGGCCAGTCCCCTCCGTGCAAGTGTACATAGGAGCTGTAAATACACAGCAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp CACACAGCTGAGGCCCCTCAGTCAGGTTCTGACAAGTCCTCTCGGCCTGTCTGTTGGGCTTACTGCCTGTaGAGTTTGCCAGAGCGGGTC +
Preference number: 4 (lower is better)
Translates to: HTAEAPQSGSDKSSRPVCWAYCL*SLPERV
Trigger: GACCCGCTCTGGCAAACTCCACAGGCAGTAAGCCCA...ACAGACAGGCCGAGAGGACTTGTCAGAACCTGACTGAGGGGCCTCAGCTGTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR TCA 90 bp ACACAGCTGAGGCCCCTCAGTCAGGTTCTGACAAGTCCTCTCGGCCTGTCTGTGTGGGAGGTGGTGAACTaGTTGACTATGTCCAGCGCC +
Preference number: 4 (lower is better)
Translates to: TQLRPLSQVLTSPLGLSVWEVVN*LTMSSA
Trigger: GGCGCTGGACATAGTCAATCAGTTCACCACCTCCCA...CACAGACAGGCCGAGAGGACTTGTCAGAACCTGACTGAGGGGCCTCAGCTGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp ACAAATTCCCAGACCACAGGGACTTTAGACAAGGCAAGGAGGTGCATCCCCAAAGCCCGCTGCCAGCACTaGGGATGCTGCCCACGCTAC +
Preference number: 4 (lower is better)
Translates to: TNSQTTGTLDKARRCIPKARCQH*GCCPRY
Trigger: GTAGCGTGGGCAGCATCCGCAGTGCTGGCAGCGGGC...TTTGGGGATGCACCTCCTTGCCTTGTCTAAAGTCCCTGTGGTCTGGGAATTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp GGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTATTTACAGCTCCTATGTACACGAGGCTGAAGTTCCTTaGGATGGAAGGACGCTGGGC +
Preference number: 4 (lower is better)
Translates to: GHRQEGMPLLCIYSSYVHEAEVP*DGRTLG
Trigger: GCCCAGCGTCCTTCCATCGCAAGGAACTTCAGCCTC...GTGTACATAGGAGCTGTAAATACACAGCAGGGGCATGCCTTCCTGCCGGTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp GCTCCCACACAGCTGAGGCCCCTCAGTCAGGTTCTGACAAGTCCTCTCGGCCTGAGTGCCACGCATAAGTaGCTGTTCAAAAGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: APTQLRPLSQVLTSPLGLSATHK*LFKSSW
Trigger: CCAGCTGCTTTTGAACAGCCACTTATGCGTGGCACT...CAGGCCGAGAGGACTTGTCAGAACCTGACTGAGGGGCCTCAGCTGTGTGGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp AGGGTGACTCAGTGGTGGCCAGACAAATTCCCAGACCACAGGGACTTTAGACAAACCTGCTGGACTGTCTaGGCTGAGGCCCACCCGAGG +
Preference number: 4 (lower is better)
Translates to: RVTQWWPDKFPDHRDFRQTCWTV*AEAHPR
Trigger: CCTCGGGTGGGCCTCAGCCCAGACAGTCCAGCAGGT...TTGTCTAAAGTCCCTGTGGTCTGGGAATTTGTCTGGCCACCACTGAGTCACCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp GGGATCTGTTACCTCACTGCCCGATCCCAGCCAGCGCTGCCTCCCAGTGTGGGACTTCCAAGGATGAGCTaGTCTGTTCCAGTCTCTGTT +
Preference number: 4 (lower is better)
Translates to: GICYLTARSQPALPPSVGLPRMS*SVPVSV
Trigger: AACAGAGACTGGAACAGACCAGCTCATCCTTGGAAG...TCCCACACTGGGAGGCAGCGCTGGCTGGGATCGGGCAGTGAGGTAACAGATCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR TCA 90 bp CCCTGCTGTGTATTTACAGCTCCTATGTACACTTGCACGGAGGGGACTGGCCAACTCGAAGTAGCTGCTTaGTTTCCCGGCTGGCCTGGG +
Preference number: 4 (lower is better)
Translates to: PCCVFTAPMYTCTEGTGQLEVAA*FPGWPG
Trigger: CCCAGGCCAGCCGGGAAATCAAGCAGCTACTTCGAG...TTGGCCAGTCCCCTCCGTGCAAGTGTACATAGGAGCTGTAAATACACAGCAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp TTGGGGAAAGAGGTTAATAGTTACAGAGCCCAGGCTAGACCAACTGGGTCCTCCCCTCGTGGAGTGCGGTaGCTGTCTTGGTCTGGCGGT +
Preference number: 4 (lower is better)
Translates to: LGKEVNSYRAQARPTGSSPRGVR*LSWSGG
Trigger: ACCGCCAGACCAAGACAGGCACCGCACTCCACGAGG...GGAGGACCCAGTTGGTCTAGCCTGGGCTCTGTAACTATTAACCTCTTTCCCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp AGCCCTAGGGTGACTCAGTGGTGGCCAGACAAATTCCCAGACCACAGGGACTTTGGGGTGTGGTGTAGTTaGGGTCACATGGGTCCTTCG +
Preference number: 4 (lower is better)
Translates to: SPRVTQWWPDKFPDHRDFGVWCS*GHMGPS
Trigger: CGAAGGACCCATGTGACCCCAACTACACCACACCCC...AAAGTCCCTGTGGTCTGGGAATTTGTCTGGCCACCACTGAGTCACCCTAGGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp AGGGTGACTCAGTGGTGGCCAGACAAATTCCCAGACCACAGGGACTTTAGACAATCTCCTGTGGGGCGCTaGGGTCACCAACACTGGGCT +
Preference number: 4 (lower is better)
Translates to: RVTQWWPDKFPDHRDFRQSPVGR*GHQHWA
Trigger: AGCCCAGTGTTGGTGACCCCAGCGCCCCACAGGAGA...TTGTCTAAAGTCCCTGTGGTCTGGGAATTTGTCTGGCCACCACTGAGTCACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp AGCCCTAGGGTGACTCAGTGGTGGCCAGACAAATTCCCAGACCACAGGGACTTTAGCATAGCATCCAGCTaGTCCGCCAGGGCATCGAAC +
Preference number: 4 (lower is better)
Translates to: SPRVTQWWPDKFPDHRDFSIASS*SARASN
Trigger: GTTCGATGCCCTGGCGGACCAGCTGGATGCTATGCT...AAAGTCCCTGTGGTCTGGGAATTTGTCTGGCCACCACTGAGTCACCCTAGGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
3UTR CAA 72 bp ATGCCCCTGCTGTGTATTTACAGCTCCTATGTACACTaGCACGGAGGGGACTGGCCAACCACGCAGCCTCAC +
Preference number: 4 (lower is better)
Translates to: MPLLCIYSSYVH*HGGDWPTTQPH
Trigger: GTGAGGCTGCGTGGTTGGCCAGTCCCCTCCGTGCAAGTGTACATAGGAGCTGTAAATACACAGCAGGGGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR TCA 90 bp AGGGTGACTCAGTGGTGGCCAGACAAATTCCCAGACCACAGGGACTTTAGACAAGCAGAGGGCAGTGGCTaGGCGTTCTCAATCAGGAGG +
Preference number: 4 (lower is better)
Translates to: RVTQWWPDKFPDHRDFRQAEGSG*AFSIRR
Trigger: CCTCCTGATTGAGAACGCTCAGCCACTGCCCTCTGC...TTGTCTAAAGTCCCTGTGGTCTGGGAATTTGTCTGGCCACCACTGAGTCACCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp GGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTATTTACAGCTCCTATGTACACTTAGCCACCAGTTTCTaGACGCAGGTCACGTCTCCA +
Preference number: 4 (lower is better)
Translates to: GHRQEGMPLLCIYSSYVHLATSF*TQVTSP
Trigger: TGGAGACGTGACCTGCGTGCAGAAACTGGTGGCTAA...GTGTACATAGGAGCTGTAAATACACAGCAGGGGCATGCCTTCCTGCCGGTGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp TTGGGGAAAGAGGTTAATAGTTACAGAGCCCAGGCTAGACCAACTGGGTCCTCCAGCTGCTTGTGGTACTaGGGCAGCCCCAGTGCACAC +
Preference number: 4 (lower is better)
Translates to: LGKEVNSYRAQARPTGSSSCLWY*GSPSAH
Trigger: GTGTGCACTGGGGCTGCCGCAGTACCACAAGCAGCT...GGAGGACCCAGTTGGTCTAGCCTGGGCTCTGTAACTATTAACCTCTTTCCCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp AGGGTGACTCAGTGGTGGCCAGACAAATTCCCAGACCACAGGGACTTTAGACAATGGCTCTCATGGATGTaGCCCTTCCAGCGGCCATCG +
Preference number: 4 (lower is better)
Translates to: RVTQWWPDKFPDHRDFRQWLSWM*PFQRPS
Trigger: CGATGGCCGCTGGAAGGGCCACATCCATGAGAGCCA...TTGTCTAAAGTCCCTGTGGTCTGGGAATTTGTCTGGCCACCACTGAGTCACCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp CTCAGTGGTGGCCAGACAAATTCCCAGACCACAGGGACTTTAGACAAGGCAAGGTGGGGTCACCAACACTaGGCTGGGGAACAGGCTGTT +
Preference number: 4 (lower is better)
Translates to: LSGGQTNSQTTGTLDKARWGHQH*AGEQAV
Trigger: AACAGCCTGTTCCCCAGCCCAGTGTTGGTGACCCCA...CCTTGCCTTGTCTAAAGTCCCTGTGGTCTGGGAATTTGTCTGGCCACCACTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp TTGGGGAAAGAGGTTAATAGTTACAGAGCCCAGGCTAGACCAACTGGGTCCTCCAAGGTTCCTCTCCTGTaGGGCGCTGGGGTCACCAAC +
Preference number: 4 (lower is better)
Translates to: LGKEVNSYRAQARPTGSSKVPLL*GAGVTN
Trigger: GTTGGTGACCCCAGCGCCCCACAGGAGAGGAACCTT...GGAGGACCCAGTTGGTCTAGCCTGGGCTCTGTAACTATTAACCTCTTTCCCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp TTGGGGAAAGAGGTTAATAGTTACAGAGCCCAGGCTAGACCAACTGGGTCCTCCTCCTGTGTCCAGGCTTaGTCACCCCAATGGCCGTCA +
Preference number: 4 (lower is better)
Translates to: LGKEVNSYRAQARPTGSSSCVQA*SPQWPS
Trigger: TGACGGCCATTGGGGTGACCAAGCCTGGACACAGGA...GGAGGACCCAGTTGGTCTAGCCTGGGCTCTGTAACTATTAACCTCTTTCCCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp GTTAGTTGGGGAAAGAGGTTAATAGTTACAGAGCCCAGGCTAGACCAACTGGGTGATGGCCATCAGCTCTaGACCCCTGGTCATCCGGCG +
Preference number: 4 (lower is better)
Translates to: VSWGKRLIVTEPRLDQLGDGHQL*TPGHPA
Trigger: CGCCGGATGACCAGGGGTCCAGAGCTGATGGCCATC...ACCCAGTTGGTCTAGCCTGGGCTCTGTAACTATTAACCTCTTTCCCCAACTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR TCA 90 bp TTGGGGAAAGAGGTTAATAGTTACAGAGCCCAGGCTAGACCAACTGGGTCCTCCCCTGAAAATGCCAGCTaGGTGCAGGCCACAGACACA +
Preference number: 4 (lower is better)
Translates to: LGKEVNSYRAQARPTGSSPENAS*VQATDT
Trigger: TGTGTCTGTGGCCTGCACTCAGCTGGCATTTTCAGG...GGAGGACCCAGTTGGTCTAGCCTGGGCTCTGTAACTATTAACCTCTTTCCCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp CACCTCCTCCTAGAGGAGAATGTTCTACGAGGGTCCCTGTTCAGGGGCCATAGCCATGGGTTAGACTGGTaGTGGAGAAGCATTTCTGAC +
Preference number: 4 (lower is better)
Translates to: HLLLEENVLRGSLFRGHSHGLDW*WRSISD
Trigger: GTCAGAAATGCTTCTCCAGCACCAGTCTAACCCATG...GCTATGGCCCCTGAACAGGGACCCTCGTAGAACATTCTCCTCTAGGAGGAGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp ACAAATTCCCAGACCACAGGGACTTTAGACAAGGCAAGGAGGTGCATCCCCAAAGCCTCTCGAAGTAGCTaGTTGATTTCCCGGCTGGCC +
Preference number: 4 (lower is better)
Translates to: TNSQTTGTLDKARRCIPKASRSS*LISRLA
Trigger: GGCCAGCCGGGAAATCAAGCAGCTACTTCGAGAGGC...TTTGGGGATGCACCTCCTTGCCTTGTCTAAAGTCCCTGTGGTCTGGGAATTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp TTGGGGAAAGAGGTTAATAGTTACAGAGCCCAGGCTAGACCAACTGGGTCCTCCCTTGGGAGCTGTTCCTaGTCCAGGCACTTTGAGGAG +
Preference number: 4 (lower is better)
Translates to: LGKEVNSYRAQARPTGSSLGSCS*SRHFEE
Trigger: CTCCTCAAAGTGCCTGGAGCAGGAACAGCTCCCAAG...GGAGGACCCAGTTGGTCTAGCCTGGGCTCTGTAACTATTAACCTCTTTCCCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp CTCAGTGGTGGCCAGACAAATTCCCAGACCACAGGGACTTTAGACAAGGCAAGGAAAATGCCAGCTGAGTaGAGGCCACAGACACAGGCT +
Preference number: 4 (lower is better)
Translates to: LSGGQTNSQTTGTLDKARKMPAE*RPQTQA
Trigger: AGCCTGTGTCTGTGGCCTGCACTCAGCTGGCATTTT...CCTTGCCTTGTCTAAAGTCCCTGTGGTCTGGGAATTTGTCTGGCCACCACTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp TTGGGGAAAGAGGTTAATAGTTACAGAGCCCAGGCTAGACCAACTGGGTCCTCCACTGGCAGAGGGCAGTaGCTGAGCGTTCTCAATCAG +
Preference number: 4 (lower is better)
Translates to: LGKEVNSYRAQARPTGSSTGRGQ*LSVLNQ
Trigger: CTGATTGAGAACGCTCAGCCACTGCCCTCTGCCAGT...GGAGGACCCAGTTGGTCTAGCCTGGGCTCTGTAACTATTAACCTCTTTCCCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp AGGGTGACTCAGTGGTGGCCAGACAAATTCCCAGACCACAGGGACTTTAGACAAGCTTGGTCACCCCAATaGCCGTCAAATCCTCAGGTG +
Preference number: 4 (lower is better)
Translates to: RVTQWWPDKFPDHRDFRQAWSPQ*PSNPQV
Trigger: CACCTGAGGATTTGACGGCCATTGGGGTGACCAAGC...TTGTCTAAAGTCCCTGTGGTCTGGGAATTTGTCTGGCCACCACTGAGTCACCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp TTGGGGAAAGAGGTTAATAGTTACAGAGCCCAGGCTAGACCAACTGGGTCCTCCTCACCAACACTGGGCTaGGGAACAGGCTGTTCCTGT +
Preference number: 4 (lower is better)
Translates to: LGKEVNSYRAQARPTGSSSPTLG*GTGCSC
Trigger: ACAGGAACAGCCTGTTCCCCAGCCCAGTGTTGGTGA...GGAGGACCCAGTTGGTCTAGCCTGGGCTCTGTAACTATTAACCTCTTTCCCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR TCA 90 bp AGCCCTAGGGTGACTCAGTGGTGGCCAGACAAATTCCCAGACCACAGGGACTTTACTGAGTTACAGAGCTaGGAGAAGAGGCTGAAGTTC +
Preference number: 4 (lower is better)
Translates to: SPRVTQWWPDKFPDHRDFTELQS*EKRLKF
Trigger: GAACTTCAGCCTCTTCTCTCAGCTCTGTAACTCAGT...AAAGTCCCTGTGGTCTGGGAATTTGTCTGGCCACCACTGAGTCACCCTAGGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp CCCTGCTGTGTATTTACAGCTCCTATGTACACTTGCACGGAGGGGACTGGCCAACCAGCTTTCAAGAGCTaGCTGATGACTTCTCTGTGG +
Preference number: 4 (lower is better)
Translates to: PCCVFTAPMYTCTEGTGQPAFKS*LMTSLW
Trigger: CCACAGAGAAGTCATCAGGCAGCTCTTGAAAGCTGG...TTGGCCAGTCCCCTCCGTGCAAGTGTACATAGGAGCTGTAAATACACAGCAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp AGCCCTAGGGTGACTCAGTGGTGGCCAGACAAATTCCCAGACCACAGGGACTTTAGGCATGGGTTAGACTaGTGCTGGAGAAGCATTTCT +
Preference number: 4 (lower is better)
Translates to: SPRVTQWWPDKFPDHRDFRHGLD*CWRSIS
Trigger: AGAAATGCTTCTCCAGCACCAGTCTAACCCATGCCT...AAAGTCCCTGTGGTCTGGGAATTTGTCTGGCCACCACTGAGTCACCCTAGGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp GCAGGAAGGCATGCCCCTGCTGTGTATTTACAGCTCCTATGTACACTTGCACGGACACATAAAGACATATaGGGCAGGTCCTTGGCCAGG +
Preference number: 4 (lower is better)
Translates to: AGRHAPAVYLQLLCTLARTHKDI*GRSLAR
Trigger: CCTGGCCAAGGACCTGCCCCATATGTCTTTATGTGT...CCGTGCAAGTGTACATAGGAGCTGTAAATACACAGCAGGGGCATGCCTTCCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp CTCAGTGGTGGCCAGACAAATTCCCAGACCACAGGGACTTTAGACAAGGCAAGGATGTCCAGCGCCGTCTaGTTATATGTGTTCCGGATA +
Preference number: 4 (lower is better)
Translates to: LSGGQTNSQTTGTLDKARMSSAV*LYVFRI
Trigger: TATCCGGAACACATATAACCAGACGGCGCTGGACAT...CCTTGCCTTGTCTAAAGTCCCTGTGGTCTGGGAATTTGTCTGGCCACCACTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp GTTAGTTGGGGAAAGAGGTTAATAGTTACAGAGCCCAGGCTAGACCAACTGGGTTGTTCCAGTCTCTGTTaGGCCCGACCTGGACACACA +
Preference number: 4 (lower is better)
Translates to: VSWGKRLIVTEPRLDQLGCSSLC*ARPGHT
Trigger: TGTGTGTCCAGGTCGGGCCCAACAGAGACTGGAACA...ACCCAGTTGGTCTAGCCTGGGCTCTGTAACTATTAACCTCTTTCCCCAACTAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp ACAAATTCCCAGACCACAGGGACTTTAGACAAGGCAAGGAGGTGCATCCCCAAAAGCATTAGCTTCTTCTaGTGCCCCAGCTTGTTCACG +
Preference number: 4 (lower is better)
Translates to: TNSQTTGTLDKARRCIPKSISFF*CPSLFT
Trigger: CGTGAACAAGCTGGGGCACCAGAAGAAGCTAATGCT...TTTGGGGATGCACCTCCTTGCCTTGTCTAAAGTCCCTGTGGTCTGGGAATTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp ACAAATTCCCAGACCACAGGGACTTTAGACAAGGCAAGGAGGTGCATCCCCAAACAGGAGCTTTGTTTTTaGAGCCTTCACTTTAGCCAC +
Preference number: 4 (lower is better)
Translates to: TNSQTTGTLDKARRCIPKQELCF*SLHFSH
Trigger: GTGGCTAAAGTGAAGGCTGCAAAAACAAAGCTCCTG...TTTGGGGATGCACCTCCTTGCCTTGTCTAAAGTCCCTGTGGTCTGGGAATTTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR TCA 90 bp ATGTGGAATGACTCTTTCATTGATGTTAGTTGGGGAAAGAGGTTAATAGTTACAAGGGTTAGAGGAAGCTaGGGGAGGGTCACACGGGGC +
Preference number: 4 (lower is better)
Translates to: MWNDSFIDVSWGKRLIVTRVRGS*GRVTRG
Trigger: GCCCCGTGTGACCCTCCCTCAGCTTCCTCTAACCCT...TGTAACTATTAACCTCTTTCCCCAACTAACATCAATGAAAGAGTCATTCCACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR GCA 90 bp ATGTGGAATGACTCTTTCATTGATGTTAGTTGGGGAAAGAGGTTAATAGTTACAGCTGGCTTCGGCCGCTaGTTGATAGTCAGGTTCCCC +
Preference number: 4 (lower is better)
Translates to: MWNDSFIDVSWGKRLIVTAGFGR*LIVRFP
Trigger: GGGGAACCTGACTATCAAGCAGCGGCCGAAGCCAGC...TGTAACTATTAACCTCTTTCCCCAACTAACATCAATGAAAGAGTCATTCCACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp ATGTGGAATGACTCTTTCATTGATGTTAGTTGGGGAAAGAGGTTAATAGTTACACCAAGTGCAGGGGTGTaGTGTAGTTGGGGTCACATG +
Preference number: 4 (lower is better)
Translates to: MWNDSFIDVSWGKRLIVTPSAGV*CSWGHM
Trigger: CATGTGACCCCAACTACACCACACCCCTGCACTTGG...TGTAACTATTAACCTCTTTCCCCAACTAACATCAATGAAAGAGTCATTCCACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CCA 90 bp ATGTGGAATGACTCTTTCATTGATGTTAGTTGGGGAAAGAGGTTAATAGTTACACTGATGACTTCTCTGTaGCCATTCTTGGCAGCCAAG +
Preference number: 4 (lower is better)
Translates to: MWNDSFIDVSWGKRLIVTLMTSL*PFLAAK
Trigger: CTTGGCTGCCAAGAATGGCCACAGAGAAGTCATCAG...TGTAACTATTAACCTCTTTCCCCAACTAACATCAATGAAAGAGTCATTCCACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR TCA 90 bp ATGTGGAATGACTCTTTCATTGATGTTAGTTGGGGAAAGAGGTTAATAGTTACATCACTTAGCCAGTTATaGATGGCCTGTGCATCCTTC +
Preference number: 4 (lower is better)
Translates to: MWNDSFIDVSWGKRLIVTSLSQL*MACASF
Trigger: GAAGGATGCACAGGCCATTCATAACTGGCTAAGTGA...TGTAACTATTAACCTCTTTCCCCAACTAACATCAATGAAAGAGTCATTCCACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 90 bp GGAGGCCAGTGCCATGGCCGTTGGTGCCTTCAGAGCTCTGCCCGCTaGCAGCACTGCGGATGCTGCCCACGCTACCCTCGCTGCCCACGC +
Preference number: 5 (lower is better)
Translates to: GGQCHGRWCLQSSAR*QHCGCCPRYPRCPR
Trigger: GCGTGGGCAGCGAGGGTAGCGTGGGCAGCATCCGCAGTGCTGGCAGCGGGCAGAGCTCTGAAGGCACCAACGGCCATGGCACTGGCCTCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CCA 90 bp TCCAGAGCGGTAACCGGCCAGAGGGCGGTGGCTCAGGTTGTCTGCTaGGGACGGGGCATGCAGGCCTGGCAGTCCCTGGTCCTCACTGGC +
Preference number: 5 (lower is better)
Translates to: SRAVTGQRAVAQVVC*GRGMQAWQSLVLTG
Trigger: GCCAGTGAGGACCAGGGACTGCCAGGCCTGCATGCCCCGTCCCCAGCAGACAACCTGAGCCACCGCCCTCTGGCCGGTTACCGCTCTGGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 90 bp CTCTCCAGAGCGGTAACCGGCCAGAGGGCGGTGGCTCAGGTTGTCTaGTGGGGACGGGGCATGCAGGCCTGGCAGTCCCTGGTCCTCACT +
Preference number: 5 (lower is better)
Translates to: LSRAVTGQRAVAQVV*WGRGMQAWQSLVLT
Trigger: AGTGAGGACCAGGGACTGCCAGGCCTGCATGCCCCGTCCCCAGCAGACAACCTGAGCCACCGCCCTCTGGCCGGTTACCGCTCTGGAGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp GGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTAGGGCGGTGGCTCAGGTaGTCTGCTGGGGACGGGGCA +
Preference number: 5 (lower is better)
Translates to: GQAGAEKATGRKACPCCVGRWLR*SAGDGA
Trigger: TGCCCCGTCCCCAGCAGACAACCTGAGCCACCGCCC...TACACAGCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 90 bp GGCCGTTGGTGCCTTCAGAGCTCTGCCCGCTGCCAGCACTGCGGATaGTGCCCACGCTACCCTCGCTGCCCACGCTATTCCTGTCACCTG +
Preference number: 5 (lower is better)
Translates to: GRWCLQSSARCQHCG*CPRYPRCPRYSCHL
Trigger: CAGGTGACAGGAATAGCGTGGGCAGCGAGGGTAGCGTGGGCAGCATCCGCAGTGCTGGCAGCGGGCAGAGCTCTGAAGGCACCAACGGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 90 bp GGACCCCTGGTCATCCGGCGTCCGCCTTCACCCAGGGCTTCTCCATaGAGCAGGCCCCGCCGAAGTTCTGCCAGCCGTTTCACACCTAGC +
Preference number: 5 (lower is better)
Translates to: GPLVIRRPPSPRASP*SRPRRSSASRFTPS
Trigger: GCTAGGTGTGAAACGGCTGGCAGAACTTCGGCGGGGCCTGCTGCATGGAGAAGCCCTGGGTGAAGGCGGACGCCGGATGACCAGGGGTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 90 bp AGCCGGAGGCTCCGTCTCCACATTGGGCTTACTGCCTGTGGAGTTTaGCAGAGCGGGTCCAGCACTGGGCCCTGGGTGCCCAGGGGACTG +
Preference number: 5 (lower is better)
Translates to: SRRLRLHIGLTACGV*QSGSSTGPWVPRGL
Trigger: CAGTCCCCTGGGCACCCAGGGCCCAGTGCTGGACCCGCTCTGGCAAACTCCACAGGCAGTAAGCCCAATGTGGAGACGGAGCCTCCGGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 90 bp CGTTGGTGCCTTCAGAGCTCTGCCCGCTGCCAGCACTGCGGATGCTaGCCACGCTACCCTCGCTGCCCACGCTATTCCTGTCACCTGCTG +
Preference number: 5 (lower is better)
Translates to: RWCLQSSARCQHCGC*PRYPRCPRYSCHLL
Trigger: CAGCAGGTGACAGGAATAGCGTGGGCAGCGAGGGTAGCGTGGGCAGCATCCGCAGTGCTGGCAGCGGGCAGAGCTCTGAAGGCACCAACG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 90 bp TGCCATGGCCGTTGGTGCCTTCAGAGCTCTGCCCGCTGCCAGCACTaGGGATGCTGCCCACGCTACCCTCGCTGCCCACGCTATTCCTGT +
Preference number: 5 (lower is better)
Translates to: CHGRWCLQSSARCQH*GCCPRYPRCPRYSC
Trigger: ACAGGAATAGCGTGGGCAGCGAGGGTAGCGTGGGCAGCATCCGCAGTGCTGGCAGCGGGCAGAGCTCTGAAGGCACCAACGGCCATGGCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 90 bp TCAATCAGGAGGCCAGTGCCATGGCCGTTGGTGCCTTCAGAGCTCTaGCCGCTGCCAGCACTGCGGATGCTGCCCACGCTACCCTCGCTG +
Preference number: 5 (lower is better)
Translates to: SIRRPVPWPLVPSEL*PLPALRMLPTLPSL
Trigger: CAGCGAGGGTAGCGTGGGCAGCATCCGCAGTGCTGGCAGCGGGCAGAGCTCTGAAGGCACCAACGGCCATGGCACTGGCCTCCTGATTGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 90 bp GTGGCTGAGCGTTCTCAATCAGGAGGCCAGTGCCATGGCCGTTGGTaGCTTCAGAGCTCTGCCCGCTGCCAGCACTGCGGATGCTGCCCA +
Preference number: 5 (lower is better)
Translates to: VAERSQSGGQCHGRW*LQSSARCQHCGCCP
Trigger: TGGGCAGCATCCGCAGTGCTGGCAGCGGGCAGAGCTCTGAAGGCACCAACGGCCATGGCACTGGCCTCCTGATTGAGAACGCTCAGCCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 90 bp CACTGGCAGAGGGCAGTGGCTGAGCGTTCTCAATCAGGAGGCCAGTaGCATGGCCGTTGGTGCCTTCAGAGCTCTGCCCGCTGCCAGCAC +
Preference number: 5 (lower is better)
Translates to: HWQRAVAERSQSGGQ*HGRWCLQSSARCQH
Trigger: GTGCTGGCAGCGGGCAGAGCTCTGAAGGCACCAACGGCCATGGCACTGGCCTCCTGATTGAGAACGCTCAGCCACTGCCCTCTGCCAGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CCA 90 bp GCAGTGGCTGAGCGTTCTCAATCAGGAGGCCAGTGCCATGGCCGTTaGTGCCTTCAGAGCTCTGCCCGCTGCCAGCACTGCGGATGCTGC +
Preference number: 5 (lower is better)
Translates to: AVAERSQSGGQCHGR*CLQSSARCQHCGCC
Trigger: GCAGCATCCGCAGTGCTGGCAGCGGGCAGAGCTCTGAAGGCACCAACGGCCATGGCACTGGCCTCCTGATTGAGAACGCTCAGCCACTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CCA 90 bp AGTTGGGCCTTCCCCATTCTCCAGGCCTTCGATGGCCATCAGCTCTaGACCCCTGGTCATCCGGCGTCCGCCTTCACCCAGGGCTTCTCC +
Preference number: 5 (lower is better)
Translates to: SWAFPILQAFDGHQL*TPGHPASAFTQGFS
Trigger: GGAGAAGCCCTGGGTGAAGGCGGACGCCGGATGACCAGGGGTCCAGAGCTGATGGCCATCGAAGGCCTGGAGAATGGGGAAGGCCCAACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp TGTTACCTCACTGCCCGATCCCAGCCAGCGCTGCCTCCCAGTGTGGGATGGCCAATATCCGGGAGAAGCTaGGTCGCAGAGGGGTGGGGG +
Preference number: 5 (lower is better)
Translates to: CYLTARSQPALPPSVGWPISGRS*VAEGWG
Trigger: CCCCCACCCCTCTGCGACCAAGCTTCTCCCGGATAT...TGGCCATCCCACACTGGGAGGCAGCGCTGGCTGGGATCGGGCAGTGAGGTAACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp TGGGATGGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCATATGGGGCAGGTCCTaGGCCAGGGAGCGGAGAACA +
Preference number: 5 (lower is better)
Translates to: WDGQAGAEKATGRKACPCIWGRS*ARERRT
Trigger: TGTTCTCCGCTCCCTGGCCAAGGACCTGCCCCATAT...GCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCCATCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp GATGGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCTGTGGCTTCGGCCGCTGCTaGATAGTCAGGTTCCCCTCC +
Preference number: 5 (lower is better)
Translates to: DGQAGAEKATGRKACPCCGFGRC*IVRFPS
Trigger: GGAGGGGAACCTGACTATCAAGCAGCGGCCGAAGCC...ACAGCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCCATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp ACACAGCTGAGGCCCCTCAGTCAGGTTCTGACAAGTCCTCTCGGCCTGTCTGTGCCTGCTCCAGGCACTTaGAGGAGGGCGGCCGGGGGA +
Preference number: 5 (lower is better)
Translates to: TQLRPLSQVLTSPLGLSVPAPGT*RRAAGG
Trigger: TCCCCCGGCCGCCCTCCTCAAAGTGCCTGGAGCAGG...CACAGACAGGCCGAGAGGACTTGTCAGAACCTGACTGAGGGGCCTCAGCTGTGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CCA 90 bp CTTCCCCATTCTCCAGGCCTTCGATGGCCATCAGCTCTGGACCCCTaGTCATCCGGCGTCCGCCTTCACCCAGGGCTTCTCCATGCAGCA +
Preference number: 5 (lower is better)
Translates to: LPHSPGLRWPSALDP*SSGVRLHPGLLHAA
Trigger: TGCTGCATGGAGAAGCCCTGGGTGAAGGCGGACGCCGGATGACCAGGGGTCCAGAGCTGATGGCCATCGAAGGCCTGGAGAATGGGGAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CCA 90 bp AGTTGGGGTCAGGCTAGGACTAGTCCGGGCAAGGGTGCTGCGTCCTaGTCTCCGAGTAAGCGTGGCATAACTGCCCAGGGCACTGCCCAC +
Preference number: 5 (lower is better)
Translates to: SWGQARTSPGKGAAS*SPSKRGITAQGTAH
Trigger: GTGGGCAGTGCCCTGGGCAGTTATGCCACGCTTACTCGGAGACCAGGACGCAGCACCCTTGCCCGGACTAGTCCTAGCCTGACCCCAACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp TGTTACCTCACTGCCCGATCCCAGCCAGCGCTGCCTCCCAGTGTGGGATGGCCAACTCCGAGGGGCCGGTaGGTTCACTCAGTGTTCTCC +
Preference number: 5 (lower is better)
Translates to: CYLTARSQPALPPSVGWPTPRGR*VHSVFS
Trigger: GGAGAACACTGAGTGAACCAACCGGCCCCTCGGAGT...TGGCCATCCCACACTGGGAGGCAGCGCTGGCTGGGATCGGGCAGTGAGGTAACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp GCTCCCACACAGCTGAGGCCCCTCAGTCAGGTTCTGACAAGTCCTCTCGGCCTGAGGGTCACACGGGGCTaGGGTGGACAGGGGATTGGA +
Preference number: 5 (lower is better)
Translates to: APTQLRPLSQVLTSPLGLRVTRG*GGQGIG
Trigger: TCCAATCCCCTGTCCACCCAAGCCCCGTGTGACCCT...CAGGCCGAGAGGACTTGTCAGAACCTGACTGAGGGGCCTCAGCTGTGTGGGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp TGTTACCTCACTGCCCGATCCCAGCCAGCGCTGCCTCCCAGTGTGGGATGGCCAAGGGGGCGCATGCCATaGCTGTCCTTGATGTCCACA +
Preference number: 5 (lower is better)
Translates to: CYLTARSQPALPPSVGWPRGRMP*LSLMST
Trigger: TGTGGACATCAAGGACAGCAATGGCATGCGCCCCCT...TGGCCATCCCACACTGGGAGGCAGCGCTGGCTGGGATCGGGCAGTGAGGTAACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp GTCAGCTGCTCACGGGGAGAGCTTCGCTCCCACACAGCTGAGGCCCCTCAGTCAAGTGCGGTGCCTGTCTaGGTCTGGCGGTTGATCTCA +
Preference number: 5 (lower is better)
Translates to: VSCSRGELRSHTAEAPQSSAVPV*VWRLIS
Trigger: TGAGATCAACCGCCAGACCAAGACAGGCACCGCACT...TGACTGAGGGGCCTCAGCTGTGTGGGAGCGAAGCTCTCCCCGTGAGCAGCTGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp GGGATCTGTTACCTCACTGCCCGATCCCAGCCAGCGCTGCCTCCCAGTGTGGGATCTCGAAGTAGCTGCTaGATTTCCCGGCTGGCCTGG +
Preference number: 5 (lower is better)
Translates to: GICYLTARSQPALPPSVGSRSSC*ISRLAW
Trigger: CCAGGCCAGCCGGGAAATCAAGCAGCTACTTCGAGA...TCCCACACTGGGAGGCAGCGCTGGCTGGGATCGGGCAGTGAGGTAACAGATCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp GGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTATTTACAGCTCCTATGTACACGGGATGCCCACCCGCTaGCTGACCACCTCGACGATG +
Preference number: 5 (lower is better)
Translates to: GHRQEGMPLLCIYSSYVHGMPTR*LTTSTM
Trigger: CATCGTCGAGGTGGTCAGCAAGCGGGTGGGCATCCC...GTGTACATAGGAGCTGTAAATACACAGCAGGGGCATGCCTTCCTGCCGGTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS TCA 90 bp GTGCATCCTTCCCTTCCAGTAGCTGCTCTGGTCTCACATCCTGGGTaGAGATCTCTCCAGAGCGGTAACCGGCCAGAGGGCGGTGGCTCA +
Preference number: 5 (lower is better)
Translates to: VHPSLPVAALVSHPG*RSLQSGNRPEGGGS
Trigger: TGAGCCACCGCCCTCTGGCCGGTTACCGCTCTGGAGAGATCTTCACCCAGGATGTGAGACCAGAGCAGCTACTGGAAGGGAAGGATGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS TCA 90 bp CCCTGGGTGCCCAGGGGACTGAGTTACAGAGCTGAGAGAAGAGGCTaGAGTTCCTTGCGATGGAAGGACGCTGGGCTCAGACCGTTGTGG +
Preference number: 5 (lower is better)
Translates to: PWVPRGLSYRAERRG*SSLRWKDAGLRPLW
Trigger: CCACAACGGTCTGAGCCCAGCGTCCTTCCATCGCAAGGAACTTCAGCCTCTTCTCTCAGCTCTGTAACTCAGTCCCCTGGGCACCCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 90 bp CCAGCGGCCATCGGGGTGCTGTTCGAGCACCGTGATGACATCTCCTaGTCGGACATTGAGAGCGGTGGGGTCATGAAGGTTCCAGAAATC +
Preference number: 5 (lower is better)
Translates to: PAAIGVLFEHRDDIS*SDIESGGVMKVPEI
Trigger: GATTTCTGGAACCTTCATGACCCCACCGCTCTCAATGTCCGAGCAGGAGATGTCATCACGGTGCTCGAACAGCACCCCGATGGCCGCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp GATGGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTCTTGGTCTGGCGGTaGATCTCAATACCAGCTTTC +
Preference number: 5 (lower is better)
Translates to: DGQAGAEKATGRKACPCCVLVWR*ISIPAF
Trigger: GAAAGCTGGTATTGAGATCAACCGCCAGACCAAGAC...ACAGCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCCATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 90 bp TGGTCCGCCAGGGCATCGAACATAGTGCTAATGTCATCCAGAATGTaGTTGGTAGACGTCCCTGTGGGGCCGTCTCGTTCCTCGGTGCCA +
Preference number: 5 (lower is better)
Translates to: WSARASNIVLMSSRM*LVDVPVGPSRSSVP
Trigger: TGGCACCGAGGAACGAGACGGCCCCACAGGGACGTCTACCAAGCACATTCTGGATGACATTAGCACTATGTTCGATGCCCTGGCGGACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp TGGGATGGCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCGTCTTCTTCAACTTGTaGACTAGGCATGGGTTAGAC +
Preference number: 5 (lower is better)
Translates to: WDGQAGAEKATGRKACPCVFFNL*TRHGLD
Trigger: GTCTAACCCATGCCTAGTCAACAAGTTGAAGAAGAC...GCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGCCATCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp AGCCCTAGGGTGACTCAGTGGTGGCCAGACAAATTCCCAGACCACAGGGACTTTTTCCTGTGTCCAGGCTaGGTCACCCCAATGGCCGTC +
Preference number: 5 (lower is better)
Translates to: SPRVTQWWPDKFPDHRDFFLCPG*VTPMAV
Trigger: GACGGCCATTGGGGTGACCAAGCCTGGACACAGGAA...AAAGTCCCTGTGGTCTGGGAATTTGTCTGGCCACCACTGAGTCACCCTAGGGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp GTTAGTTGGGGAAAGAGGTTAATAGTTACAGAGCCCAGGCTAGACCAACTGGGTCCTGTGGCCCCTTCCTaGGGCCCCGAGGTTCCGTCT +
Preference number: 5 (lower is better)
Translates to: VSWGKRLIVTEPRLDQLGPVAPS*GPEVPS
Trigger: AGACGGAACCTCGGGGCCCAAGGAAGGGGCCACAGG...ACCCAGTTGGTCTAGCCTGGGCTCTGTAACTATTAACCTCTTTCCCCAACTAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp CACACAGCTGAGGCCCCTCAGTCAGGTTCTGACAAGTCCTCTCGGCCTGTCTGTCACTTGGGCCTGCGTTaGACAGTATCTGACTCTGTG +
Preference number: 5 (lower is better)
Translates to: HTAEAPQSGSDKSSRPVCHLGLR*TVSDSV
Trigger: CACAGAGTCAGATACTGTCAAACGCAGGCCCAAGTG...ACAGACAGGCCGAGAGGACTTGTCAGAACCTGACTGAGGGGCCTCAGCTGTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CCA 90 bp GAGGGTAAGTTCTGTGGACACATAAAGACATATGGGGCAGGTCCTTaGCCAGGGAGCGGAGAACAAAGCTTAGAGGGGCGCTCTGTACCC +
Preference number: 5 (lower is better)
Translates to: EGKFCGHIKTYGAGP*PGSGEQSLEGRSVP
Trigger: GGGTACAGAGCGCCCCTCTAAGCTTTGTTCTCCGCTCCCTGGCCAAGGACCTGCCCCATATGTCTTTATGTGTCCACAGAACTTACCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp GCCAGGCAGGAGCAGAAAAGGCCACCGGCAGGAAGGCATGCCCCTGCTGTGTATGGTGTCTTCTTCAACTaGTTGACTAGGCATGGGTTA +
Preference number: 5 (lower is better)
Translates to: ARQEQKRPPAGRHAPAVYGVFFN*LTRHGL
Trigger: TAACCCATGCCTAGTCAACAAGTTGAAGAAGACACC...ATACACAGCAGGGGCATGCCTTCCTGCCGGTGGCCTTTTCTGCTCCTGCCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp TTGGGGAAAGAGGTTAATAGTTACAGAGCCCAGGCTAGACCAACTGGGTCCTCCACGGTCTGTGCCCCTTaGGCTCTCATGGATGTGGCC +
Preference number: 5 (lower is better)
Translates to: LGKEVNSYRAQARPTGSSTVCAP*ALMDVA
Trigger: GGCCACATCCATGAGAGCCAAAGGGGCACAGACCGT...GGAGGACCCAGTTGGTCTAGCCTGGGCTCTGTAACTATTAACCTCTTTCCCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp GTTAGTTGGGGAAAGAGGTTAATAGTTACAGAGCCCAGGCTAGACCAACTGGGTCTGCTCACCAGCTGCTaGTGGTACTGCGGCAGCCCC +
Preference number: 5 (lower is better)
Translates to: VSWGKRLIVTEPRLDQLGLLTSC*WYCGSP
Trigger: GGGGCTGCCGCAGTACCACAAGCAGCTGGTGAGCAG...ACCCAGTTGGTCTAGCCTGGGCTCTGTAACTATTAACCTCTTTCCCCAACTAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp CCCTGCTGTGTATTTACAGCTCCTATGTACACTTGCACGGAGGGGACTGGCCAATCTGACTCTGTGAGGTaGAAGTCAAGGCCAGGGGGC +
Preference number: 5 (lower is better)
Translates to: PCCVFTAPMYTCTEGTGQSDSVR*KSRPGG
Trigger: GCCCCCTGGCCTTGACTTCAACCTCACAGAGTCAGA...TTGGCCAGTCCCCTCCGTGCAAGTGTACATAGGAGCTGTAAATACACAGCAGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp GTTAGTTGGGGAAAGAGGTTAATAGTTACAGAGCCCAGGCTAGACCAACTGGGTCCAGTGCCATGGCCGTaGGTGCCTTCAGAGCTCTGC +
Preference number: 5 (lower is better)
Translates to: VSWGKRLIVTEPRLDQLGPVPWP*VPSELC
Trigger: GCAGAGCTCTGAAGGCACCAACGGCCATGGCACTGG...ACCCAGTTGGTCTAGCCTGGGCTCTGTAACTATTAACCTCTTTCCCCAACTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS-3UTR CAA 90 bp TTGGGGAAAGAGGTTAATAGTTACAGAGCCCAGGCTAGACCAACTGGGTCCTCCAGTGGCTCTCTCTCCTaGCACTTGGGCCTGCGTTTG +
Preference number: 5 (lower is better)
Translates to: LGKEVNSYRAQARPTGSSSGSLS*HLGLRL
Trigger: CAAACGCAGGCCCAAGTGCAAGGAGAGAGAGCCACT...GGAGGACCCAGTTGGTCTAGCCTGGGCTCTGTAACTATTAACCTCTTTCCCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CCA 90 bp GGGCAGTGTAGCCCTCTAGCTGGAACTCACTTAGCCAGTTATGAATaGCCTGTGCATCCTTCCCTTCCAGTAGCTGCTCTGGTCTCACAT +
Preference number: 5 (lower is better)
Translates to: GQCSPLAGTHLASYE*PVHPSLPVAALVSH
Trigger: ATGTGAGACCAGAGCAGCTACTGGAAGGGAAGGATGCACAGGCCATTCATAACTGGCTAAGTGAGTTCCAGCTAGAGGGCTACACTGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS TCA 90 bp ACCGTGATGACATCTCCTGCTCGGACATTGAGAGCGGTGGGGTCATaGAGGTTCCAGAAATCCTTAAGCGCTCGAACCTTCAAGATCCCT +
Preference number: 5 (lower is better)
Translates to: TVMTSPARTLRAVGS*RFQKSLSARTFKIP
Trigger: AGGGATCTTGAAGGTTCGAGCGCTTAAGGATTTCTGGAACCTTCATGACCCCACCGCTCTCAATGTCCGAGCAGGAGATGTCATCACGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 90 bp CCCAGGAGCTTTGTTTTTGCAGCCTTCACTTTAGCCACCAGTTTCTaGACGCAGGTCACGTCTCCATTCTTGACGGCAAGGATAAGGTCC +
Preference number: 5 (lower is better)
Translates to: PRSFVFAAFTLATSF*TQVTSPFLTARIRS
Trigger: GGACCTTATCCTTGCCGTCAAGAATGGAGACGTGACCTGCGTGCAGAAACTGGTGGCTAAAGTGAAGGCTGCAAAAACAAAGCTCCTGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041684.11
ENSMUST00000156812.2
CDS-3UTR CAA 90 bp TTGGGGAAAGAGGTTAATAGTTACAGAGCCCAGGCTAGACCAACTGGGTCCTCCTGGAGCCCAGGAGCTTaGTTTTTGCAGCCTTCACTT +
Preference number: 5 (lower is better)
Translates to: LGKEVNSYRAQARPTGSSWSPGA*FLQPSL
Trigger: AAGTGAAGGCTGCAAAAACAAAGCTCCTGGGCTCCA...GGAGGACCCAGTTGGTCTAGCCTGGGCTCTGTAACTATTAACCTCTTTCCCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS TCA 72 bp GCTTCCCCCTCAGCAGGGCCAGGGCGGCTCAAGCTGTaGGACCGGCGCTTCGGCCGAGGTGGGTCTGGAGGA +
Preference number: 6 (lower is better)
Translates to: ASPSAGPGRLKL*DRRFGRGGSGG
Trigger: TCCTCCAGACCCACCTCGGCCGAAGCGCCGGTCTCACAGCTTGAGCCGCCCTGGCCCTGCTGAGGGGGAAGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 72 bp CGTTGGTGCCTTCAGAGCTCTGCCCGCTGCCAGCACTaGGGATGCTGCCCACGCTACCCTCGCTGCCCACGC +
Preference number: 6 (lower is better)
Translates to: RWCLQSSARCQH*GCCPRYPRCPR
Trigger: GCGTGGGCAGCGAGGGTAGCGTGGGCAGCATCCGCAGTGCTGGCAGCGGGCAGAGCTCTGAAGGCACCAACG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CCA 72 bp GTAACCGGCCAGAGGGCGGTGGCTCAGGTTGTCTGCTaGGGACGGGGCATGCAGGCCTGGCAGTCCCTGGTC +
Preference number: 6 (lower is better)
Translates to: VTGQRAVAQVVC*GRGMQAWQSLV
Trigger: GACCAGGGACTGCCAGGCCTGCATGCCCCGTCCCCAGCAGACAACCTGAGCCACCGCCCTCTGGCCGGTTAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 72 bp TGCCATGGCCGTTGGTGCCTTCAGAGCTCTGCCCGCTaGCAGCACTGCGGATGCTGCCCACGCTACCCTCGC +
Preference number: 6 (lower is better)
Translates to: CHGRWCLQSSAR*QHCGCCPRYPR
Trigger: GCGAGGGTAGCGTGGGCAGCATCCGCAGTGCTGGCAGCGGGCAGAGCTCTGAAGGCACCAACGGCCATGGCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CAA 72 bp GGCCAGGTTCCTCTTCTGTGTCCGACACAGGGCCAGTaGGTGCGGAAGGACCAGGGGACTCCGAGGGGCCGG +
Preference number: 6 (lower is better)
Translates to: GQVPLLCPTQGQ*VRKDQGTPRGR
Trigger: CCGGCCCCTCGGAGTCCCCTGGTCCTTCCGCACCAACTGGCCCTGTGTCGGACACAGAAGAGGAACCTGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 72 bp TGCCTTCAGAGCTCTGCCCGCTGCCAGCACTGCGGATaGTGCCCACGCTACCCTCGCTGCCCACGCTATTCC +
Preference number: 6 (lower is better)
Translates to: CLQSSARCQHCG*CPRYPRCPRYS
Trigger: GGAATAGCGTGGGCAGCGAGGGTAGCGTGGGCAGCATCCGCAGTGCTGGCAGCGGGCAGAGCTCTGAAGGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 72 bp AGGCCAGTGCCATGGCCGTTGGTGCCTTCAGAGCTCTaGCCGCTGCCAGCACTGCGGATGCTGCCCACGCTA +
Preference number: 6 (lower is better)
Translates to: RPVPWPLVPSEL*PLPALRMLPTL
Trigger: TAGCGTGGGCAGCATCCGCAGTGCTGGCAGCGGGCAGAGCTCTGAAGGCACCAACGGCCATGGCACTGGCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 72 bp GTCATCCGGCGTCCGCCTTCACCCAGGGCTTCTCCATaGAGCAGGCCCCGCCGAAGTTCTGCCAGCCGTTTC +
Preference number: 6 (lower is better)
Translates to: VIRRPPSPRASP*SRPRRSSASRF
Trigger: GAAACGGCTGGCAGAACTTCGGCGGGGCCTGCTGCATGGAGAAGCCCTGGGTGAAGGCGGACGCCGGATGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CCA 72 bp GCCAGGTTCCTCTTCTGTGTCCGACACAGGGCCAGTTaGTGCGGAAGGACCAGGGGACTCCGAGGGGCCGGT +
Preference number: 6 (lower is better)
Translates to: ARFLFCVRHRAS*CGRTRGLRGAG
Trigger: ACCGGCCCCTCGGAGTCCCCTGGTCCTTCCGCACCAACTGGCCCTGTGTCGGACACAGAAGAGGAACCTGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS TCA 72 bp CCAACACTGGGCTGGGGAACAGGCTGTTCCTGTGAGTaGCCAGAGCCCCGTGAGCGGGCGCCAATGCTCTCC +
Preference number: 6 (lower is better)
Translates to: PTLGWGTGCSCE*PEPRERAPMLS
Trigger: GGAGAGCATTGGCGCCCGCTCACGGGGCTCTGGTCACTCACAGGAACAGCCTGTTCCCCAGCCCAGTGTTGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS TCA 72 bp GCTGGGCTCAGACCGTTGTGGAGGGTTAGAGGAAGCTaGGGGAGGGTCACACGGGGCTTGGGTGGACAGGGG +
Preference number: 6 (lower is better)
Translates to: AGLRPLWRVRGS*GRVTRGLGGQG
Trigger: CCCCTGTCCACCCAAGCCCCGTGTGACCCTCCCTCAGCTTCCTCTAACCCTCCACAACGGTCTGAGCCCAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 72 bp CTTCAGAGCTCTGCCCGCTGCCAGCACTGCGGATGCTaGCCACGCTACCCTCGCTGCCCACGCTATTCCTGT +
Preference number: 6 (lower is better)
Translates to: LQSSARCQHCGC*PRYPRCPRYSC
Trigger: ACAGGAATAGCGTGGGCAGCGAGGGTAGCGTGGGCAGCATCCGCAGTGCTGGCAGCGGGCAGAGCTCTGAAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 72 bp CTCCGTCTCCACATTGGGCTTACTGCCTGTGGAGTTTaGCAGAGCGGGTCCAGCACTGGGCCCTGGGTGCCC +
Preference number: 6 (lower is better)
Translates to: LRLHIGLTACGV*QSGSSTGPWVP
Trigger: GGGCACCCAGGGCCCAGTGCTGGACCCGCTCTGGCAAACTCCACAGGCAGTAAGCCCAATGTGGAGACGGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 72 bp GGGGAGCCGGAGGCTCCGTCTCCACATTGGGCTTACTaGCTGTGGAGTTTGCCAGAGCGGGTCCAGCACTGG +
Preference number: 6 (lower is better)
Translates to: GEPEAPSPHWAY*LWSLPERVQHW
Trigger: CCAGTGCTGGACCCGCTCTGGCAAACTCCACAGGCAGTAAGCCCAATGTGGAGACGGAGCCTCCGGCTCCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CCA 72 bp TCTCCAGGCCTTCGATGGCCATCAGCTCTGGACCCCTaGTCATCCGGCGTCCGCCTTCACCCAGGGCTTCTC +
Preference number: 6 (lower is better)
Translates to: SPGLRWPSALDP*SSGVRLHPGLL
Trigger: GAGAAGCCCTGGGTGAAGGCGGACGCCGGATGACCAGGGGTCCAGAGCTGATGGCCATCGAAGGCCTGGAGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CAA 72 bp GCTCCGTCTCCACATTGGGCTTACTGCCTGTGGAGTTaGCCAGAGCGGGTCCAGCACTGGGCCCTGGGTGCC +
Preference number: 6 (lower is better)
Translates to: APSPHWAYCLWS*PERVQHWALGA
Trigger: GGCACCCAGGGCCCAGTGCTGGACCCGCTCTGGCAAACTCCACAGGCAGTAAGCCCAATGTGGAGACGGAGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 72 bp TGCCAGCACTGCGGATGCTGCCCACGCTACCCTCGCTaGCCACGCTATTCCTGTCACCTGCTGGACTGTCTG +
Preference number: 6 (lower is better)
Translates to: CQHCGCCPRYPR*PRYSCHLLDCL
Trigger: CAGACAGTCCAGCAGGTGACAGGAATAGCGTGGGCAGCGAGGGTAGCGTGGGCAGCATCCGCAGTGCTGGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 72 bp CGTTCTCAATCAGGAGGCCAGTGCCATGGCCGTTGGTaGCTTCAGAGCTCTGCCCGCTGCCAGCACTGCGGA +
Preference number: 6 (lower is better)
Translates to: RSQSGGQCHGRW*LQSSARCQHCG
Trigger: TCCGCAGTGCTGGCAGCGGGCAGAGCTCTGAAGGCACCAACGGCCATGGCACTGGCCTCCTGATTGAGAACG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 72 bp AGGGCAGTGGCTGAGCGTTCTCAATCAGGAGGCCAGTaGCATGGCCGTTGGTGCCTTCAGAGCTCTGCCCGC +
Preference number: 6 (lower is better)
Translates to: RAVAERSQSGGQ*HGRWCLQSSAR
Trigger: GCGGGCAGAGCTCTGAAGGCACCAACGGCCATGGCACTGGCCTCCTGATTGAGAACGCTCAGCCACTGCCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 72 bp ACGTCCCTGTGGGGCCGTCTCGTTCCTCGGTGCCAATaGTCTTCTCAGCTGCCCTCAGTGCGGCTTCCAAGG +
Preference number: 6 (lower is better)
Translates to: TSLWGRLVPRCQ*SSQLPSVRLPR
Trigger: CCTTGGAAGCCGCACTGAGGGCAGCTGAGAAGAGCATTGGCACCGAGGAACGAGACGGCCCCACAGGGACGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CCA 72 bp CCAACACGGTCTGTGCCCCTTTGGCTCTCATGGATGTaGCCCTTCCAGCGGCCATCGGGGTGCTGTTCGAGC +
Preference number: 6 (lower is better)
Translates to: PTRSVPLWLSWM*PFQRPSGCCSS
Trigger: GCTCGAACAGCACCCCGATGGCCGCTGGAAGGGCCACATCCATGAGAGCCAAAGGGGCACAGACCGTGTTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CCA 72 bp GAGCGTTCTCAATCAGGAGGCCAGTGCCATGGCCGTTaGTGCCTTCAGAGCTCTGCCCGCTGCCAGCACTGC +
Preference number: 6 (lower is better)
Translates to: ERSQSGGQCHGR*CLQSSARCQHC
Trigger: GCAGTGCTGGCAGCGGGCAGAGCTCTGAAGGCACCAACGGCCATGGCACTGGCCTCCTGATTGAGAACGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CCA 72 bp CAGGCTAGGACTAGTCCGGGCAAGGGTGCTGCGTCCTaGTCTCCGAGTAAGCGTGGCATAACTGCCCAGGGC +
Preference number: 6 (lower is better)
Translates to: QARTSPGKGAAS*SPSKRGITAQG
Trigger: GCCCTGGGCAGTTATGCCACGCTTACTCGGAGACCAGGACGCAGCACCCTTGCCCGGACTAGTCCTAGCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 72 bp CTCTCATGGATGTGGCCCTTCCAGCGGCCATCGGGGTaGTGTTCGAGCACCGTGATGACATCTCCTGCTCGG +
Preference number: 6 (lower is better)
Translates to: LSWMWPFQRPSG*CSSTVMTSPAR
Trigger: CCGAGCAGGAGATGTCATCACGGTGCTCGAACAGCACCCCGATGGCCGCTGGAAGGGCCACATCCATGAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CCA 72 bp GCCCTGAAAGGTGAGGAGGCGAGGGCCAGCTGTAGTTaGGCCTTCCCCATTCTCCAGGCCTTCGATGGCCAT +
Preference number: 6 (lower is better)
Translates to: ALKGEEARASCS*AFPILQAFDGH
Trigger: ATGGCCATCGAAGGCCTGGAGAATGGGGAAGGCCCAACTACAGCTGGCCCTCGCCTCCTCACCTTTCAGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CCA 72 bp TGTGGAGTTTGCCAGAGCGGGTCCAGCACTGGGCCCTaGGTGCCCAGGGGACTGAGTTACAGAGCTGAGAGA +
Preference number: 6 (lower is better)
Translates to: CGVCQSGSSTGP*VPRGLSYRAER
Trigger: TCTCTCAGCTCTGTAACTCAGTCCCCTGGGCACCCAGGGCCCAGTGCTGGACCCGCTCTGGCAAACTCCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CCA 72 bp TCTCAGCTGCCCTCAGTGCGGCTTCCAAGGATGAGCTaGTCTGTTCCAGTCTCTGTTGGGCCCGACCTGGAC +
Preference number: 6 (lower is better)
Translates to: SQLPSVRLPRMS*SVPVSVGPDLD
Trigger: GTCCAGGTCGGGCCCAACAGAGACTGGAACAGACCAGCTCATCCTTGGAAGCCGCACTGAGGGCAGCTGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS TCA 72 bp CCCCAATGGCCGTCAAATCCTCAGGTGTCATCCGGCTaGTGGTCGGCACATCGTAGCCAGCCTGCAGGAAGT +
Preference number: 6 (lower is better)
Translates to: PQWPSNPQVSSG*WSAHRSQPAGS
Trigger: ACTTCCTGCAGGCTGGCTACGATGTGCCGACCATCAGCCGGATGACACCTGAGGATTTGACGGCCATTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS TCA 72 bp TGGGCCCTGGGTGCCCAGGGGACTGAGTTACAGAGCTaGGAGAAGAGGCTGAAGTTCCTTGCGATGGAAGGA +
Preference number: 6 (lower is better)
Translates to: WALGAQGTELQS*EKRLKFLAMEG
Trigger: TCCTTCCATCGCAAGGAACTTCAGCCTCTTCTCTCAGCTCTGTAACTCAGTCCCCTGGGCACCCAGGGCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CAA 90 bp TCCGCCAGGGCATCGAACATAGTGCTAATGTCATCCAGAATGTGCTaGGTAGACGTCCCTGTGGGGCCGTCTCGTTCCTCGGTGCCAATG +
Preference number: 6 (lower is better)
Translates to: SARASNIVLMSSRMC*VDVPVGPSRSSVPM
Trigger: CATTGGCACCGAGGAACGAGACGGCCCCACAGGGACGTCTACCAAGCACATTCTGGATGACATTAGCACTATGTTCGATGCCCTGGCGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 72 bp ATCGGGGTGCTGTTCGAGCACCGTGATGACATCTCCTaGTCGGACATTGAGAGCGGTGGGGTCATGAAGGTT +
Preference number: 6 (lower is better)
Translates to: IGVLFEHRDDIS*SDIESGGVMKV
Trigger: AACCTTCATGACCCCACCGCTCTCAATGTCCGAGCAGGAGATGTCATCACGGTGCTCGAACAGCACCCCGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CAA 72 bp TTGGGCCTGCGTTTGACAGTATCTGACTCTGTGAGGTaGAAGTCAAGGCCAGGGGGCACAGGTGTCTCACGG +
Preference number: 6 (lower is better)
Translates to: LGLRLTVSDSVR*KSRPGGTGVSR
Trigger: CCGTGAGACACCTGTGCCCCCTGGCCTTGACTTCAACCTCACAGAGTCAGATACTGTCAAACGCAGGCCCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CCA 72 bp TTCTGTGGACACATAAAGACATATGGGGCAGGTCCTTaGCCAGGGAGCGGAGAACAAAGCTTAGAGGGGCGC +
Preference number: 6 (lower is better)
Translates to: FCGHIKTYGAGP*PGSGEQSLEGR
Trigger: GCGCCCCTCTAAGCTTTGTTCTCCGCTCCCTGGCCAAGGACCTGCCCCATATGTCTTTATGTGTCCACAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CAA 72 bp GTTCTGTGGACACATAAAGACATATGGGGCAGGTCCTaGGCCAGGGAGCGGAGAACAAAGCTTAGAGGGGCG +
Preference number: 6 (lower is better)
Translates to: VLWTHKDIWGRS*ARERRTKLRGA
Trigger: CGCCCCTCTAAGCTTTGTTCTCCGCTCCCTGGCCAAGGACCTGCCCCATATGTCTTTATGTGTCCACAGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CAA 72 bp GCATCGAACATAGTGCTAATGTCATCCAGAATGTGCTaGGTAGACGTCCCTGTGGGGCCGTCTCGTTCCTCG +
Preference number: 6 (lower is better)
Translates to: ASNIVLMSSRMC*VDVPVGPSRSS
Trigger: CGAGGAACGAGACGGCCCCACAGGGACGTCTACCAAGCACATTCTGGATGACATTAGCACTATGTTCGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS TCA 72 bp ACATCTCCTGCTCGGACATTGAGAGCGGTGGGGTCATaGAGGTTCCAGAAATCCTTAAGCGCTCGAACCTTC +
Preference number: 6 (lower is better)
Translates to: TSPARTLRAVGS*RFQKSLSARTF
Trigger: GAAGGTTCGAGCGCTTAAGGATTTCTGGAACCTTCATGACCCCACCGCTCTCAATGTCCGAGCAGGAGATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CAA 72 bp AACAGTGCAGTCTGTAGTGGCTCTCTCTCCTTGCACTaGGGCCTGCGTTTGACAGTATCTGACTCTGTGAGG +
Preference number: 6 (lower is better)
Translates to: NSAVCSGSLSLH*GLRLTVSDSVR
Trigger: CCTCACAGAGTCAGATACTGTCAAACGCAGGCCCAAGTGCAAGGAGAGAGAGCCACTACAGACTGCACTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS CAA 90 bp CCAAAGGCCAACAGTGCAGTCTGTAGTGGCTCTCTCTCCTTGCACTaGGGCCTGCGTTTGACAGTATCTGACTCTGTGAGGTTGAAGTCA +
Preference number: 6 (lower is better)
Translates to: PKANSAVCSGSLSLH*GLRLTVSDSVRLKS
Trigger: TGACTTCAACCTCACAGAGTCAGATACTGTCAAACGCAGGCCCAAGTGCAAGGAGAGAGAGCCACTACAGACTGCACTGTTGGCCTTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041684.11
CDS GCA 72 bp TTTGTTTTTGCAGCCTTCACTTTAGCCACCAGTTTCTaGACGCAGGTCACGTCTCCATTCTTGACGGCAAGG +
Preference number: 6 (lower is better)
Translates to: FVFAAFTLATSF*TQVTSPFLTAR
Trigger: CCTTGCCGTCAAGAATGGAGACGTGACCTGCGTGCAGAAACTGGTGGCTAAAGTGAAGGCTGCAAAAACAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041684.11
ENSMUST00000156812.2