Pregenerated sensors for CARTPT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021647Ensembl transcript IDs: ENSMUST00000022150.8, ENSMUST00000224142.2
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GAAGCAACAGGGAAAGAGCCCATCCGCTCTCTGAGGGGAACGCAAACTTTATTGGGGAAAGAGGGAATATaGGAACCGAAGGTGGCGGCT | + |
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Preference number: 2 (lower is better) Translates to: EATGKEPIRSLRGTQTLLGKEGI*EPKVAA Trigger: AGCCGCCACCTTCGGTTCCCATATTCCCTCTTTCCC...CAATAAAGTTTGCGTTCCCCTCAGAGAGCGGATGGGCTCTTTCCCTGTTGCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| 3UTR-3UTR CCA 90 bp | AGGGGAACGCAAACTTTATTGTTGCTAAAGCCAGGCTCCAGGGATAATGGAGCGGGGAAAGAGGGAATATaGGAACCGAAGGTGGCGGCT | + |
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Preference number: 2 (lower is better) Translates to: RGTQTLLLLKPGSRDNGAGKEGI*EPKVAA Trigger: AGCCGCCACCTTCGGTTCCCATATTCCCTCTTTCCC...CGCTCCATTATCCCTGGAGCCTGGCTTTAGCAACAATAAAGTTTGCGTTCCCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| 3UTR-3UTR CCA 90 bp | GAAGCAACAGGGAAAGAGCCCATCCGCTCTCTGAGGGGAACGCAAACTTTATTGAATGGAGCGCTCCTTTaGGGGAAAGAGGGAATATGG | + |
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Preference number: 2 (lower is better) Translates to: EATGKEPIRSLRGTQTLLNGALL*GKEGIW Trigger: CCATATTCCCTCTTTCCCCCAAAGGAGCGCTCCATT...CAATAAAGTTTGCGTTCCCCTCAGAGAGCGGATGGGCTCTTTCCCTGTTGCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| 3UTR-3UTR CCA 90 bp | GATAAAACAAGAAAAGAAATCTTTGCACACACACCAACACCATTCGAGGCATTCAATGGAGCGCTCCTTTaGGGGAAAGAGGGAATATGG | + |
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Preference number: 2 (lower is better) Translates to: DKTRKEIFAHTPTPFEAFNGALL*GKEGIW Trigger: CCATATTCCCTCTTTCCCCCAAAGGAGCGCTCCATT...GAATGCCTCGAATGGTGTTGGTGTGTGTGCAAAGATTTCTTTTCTTGTTTTATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| 3UTR-3UTR TCA 90 bp | AAGAAAAGAAATCTTTGCACACACACCAACACCATTCGAGGCATTCTCCTTCACTCAAATCTTTTATTTTaGAGCAACAGGGAAAGAGCC | + |
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Preference number: 2 (lower is better) Translates to: KKRNLCTHTNTIRGILLHSNLLF*SNRERA Trigger: GGCTCTTTCCCTGTTGCTTCAAAATAAAAGATTTGA...GTGAAGGAGAATGCCTCGAATGGTGTTGGTGTGTGTGCAAAGATTTCTTTTCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| 3UTR TCA 72 bp | ATTCTCCTTCACACAATGATGTCAAATCTTTTATTTTaGAGCAACAGGGAAAGAGCCCATCCGCTCTCTGAG | + |
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Preference number: 3 (lower is better) Translates to: ILLHTMMSNLLF*SNRERAHPLSE Trigger: CTCAGAGAGCGGATGGGCTCTTTCCCTGTTGCTTCAAAATAAAAGATTTGACATCATTGTGTGAAGGAGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| 3UTR-3UTR CAA 90 bp | AACAAGAAAAGAAATCTTTGCACACACACCAACACCATTCGAGGCATTCTCCTTGTCAAATCTTTTATTTaGAAGCAACAGGGAAAGAGC | + |
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Preference number: 3 (lower is better) Translates to: NKKRNLCTHTNTIRGILLVKSFI*KQQGKS Trigger: GCTCTTTCCCTGTTGCTTCAAAATAAAAGATTTGAC...AAGGAGAATGCCTCGAATGGTGTTGGTGTGTGTGCAAAGATTTCTTTTCTTGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| 3UTR TCA 72 bp | ACACCAACACCATTCGAGGCATTCTCCTTCACACAATaGTGTCAAATCTTTTATTTTGAAGCAACAGGGAAA | + |
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Preference number: 3 (lower is better) Translates to: TPTPFEAFSFTQ*CQIFYFEATGK Trigger: TTTCCCTGTTGCTTCAAAATAAAAGATTTGACATCATTGTGTGAAGGAGAATGCCTCGAATGGTGTTGGTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| CDS-3UTR GCA 90 bp | GCTCCTTTGGGGGAAAGAGGGAATATGGGAACCGAAGGTGGCGGCTGTCGTCCCGGCCCCTTTCCTCACTaGGCACTGCTCTCCAGCGTC | + |
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Preference number: 4 (lower is better) Translates to: APLGERGNMGTEGGGCRPGPFPH*ALLSSV Trigger: GACGCTGGAGAGCAGTGCGCAGTGAGGAAAGGGGCC...GGGACGACAGCCGCCACCTTCGGTTCCCATATTCCCTCTTTCCCCCAAAGGAGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| CDS-3UTR CCA 90 bp | GCTCCTTTGGGGGAAAGAGGGAATATGGGAACCGAAGGTGGCGGCTGTCGTCCCATCAGCTCCTTCTCGTaGGACGCATCATCCACGGCA | + |
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Preference number: 4 (lower is better) Translates to: APLGERGNMGTEGGGCRPISSFS*DASSTA Trigger: TGCCGTGGATGATGCGTCCCACGAGAAGGAGCTGAT...GGGACGACAGCCGCCACCTTCGGTTCCCATATTCCCTCTTTCCCCCAAAGGAGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000224142.2 |
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| CDS-3UTR CCA 90 bp | GCTCCAGGGATAATGGAGCGCTCCTTTGGGGGAAAGAGGGAATATGGGAACCGAACAGCTTCCCGATCCTaGCCCCTTTCCTCACTGCGC | + |
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Preference number: 4 (lower is better) Translates to: APGIMERSFGGKREYGNRTASRS*PLSSLR Trigger: GCGCAGTGAGGAAAGGGGCCAGGATCGGGAAGCTGT...TCGGTTCCCATATTCCCTCTTTCCCCCAAAGGAGCGCTCCATTATCCCTGGAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| CDS-3UTR GCA 90 bp | TGTCAAATCTTTTATTTTGAAGCAACAGGGAAAGAGCCCATCCGCTCTCTGAGGTCCAGGGCTCGGGGCTaGAGCTCGGCGTCCTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: CQIFYFEATGKEPIRSLRSRARG*SSASSW Trigger: CCAGGAGGACGCCGAGCTGCAGCCCCGAGCCCTGGA...CCTCAGAGAGCGGATGGGCTCTTTCCCTGTTGCTTCAAAATAAAAGATTTGACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| CDS-3UTR GCA 90 bp | AAGAAATCTTTGCACACACACCAACACCATTCGAGGCATTCTCCTTCACACAATTCCAGGGCTCGGGGCTaGAGCTCGGCGTCCTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: KKSLHTHQHHSRHSPSHNSRARG*SSASSW Trigger: CCAGGAGGACGCCGAGCTGCAGCCCCGAGCCCTGGA...ATTGTGTGAAGGAGAATGCCTCGAATGGTGTTGGTGTGTGTGCAAAGATTTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| CDS-3UTR CCA 90 bp | AGGGGAACGCAAACTTTATTGTTGCTAAAGCCAGGCTCCAGGGATAATGGAGCGGGCAGCTCCTTCTCGTaGGACGCATCATCCACGGCA | + |
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Preference number: 4 (lower is better) Translates to: RGTQTLLLLKPGSRDNGAGSSFS*DASSTA Trigger: TGCCGTGGATGATGCGTCCCACGAGAAGGAGCTGCC...CGCTCCATTATCCCTGGAGCCTGGCTTTAGCAACAATAAAGTTTGCGTTCCCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022150.8 |
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| 3UTR CAA 72 bp | CCCATCCGCTCTCTGAGGGGAACGCAAACTTTATTGTaGCTAAAGCCAGGCTCCAGGGATAATGGAGCGCTC | + |
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Preference number: 4 (lower is better) Translates to: PIRSLRGTQTLL*LKPGSRDNGAL Trigger: GAGCGCTCCATTATCCCTGGAGCCTGGCTTTAGCAACAATAAAGTTTGCGTTCCCCTCAGAGAGCGGATGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| 3UTR CAA 72 bp | GAGCCCATCCGCTCTCTGAGGGGAACGCAAACTTTATaGTTGCTAAAGCCAGGCTCCAGGGATAATGGAGCG | + |
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Preference number: 4 (lower is better) Translates to: EPIRSLRGTQTL*LLKPGSRDNGA Trigger: CGCTCCATTATCCCTGGAGCCTGGCTTTAGCAACAATAAAGTTTGCGTTCCCCTCAGAGAGCGGATGGGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| CDS-3UTR GCA 90 bp | GAAGCAACAGGGAAAGAGCCCATCCGCTCTCTGAGGGGAACGCAAACTTTATTGTTCCTCACTGCGCACTaGTCTCCAGCGTCACACATG | + |
|
Preference number: 4 (lower is better) Translates to: EATGKEPIRSLRGTQTLLFLTAH*SPASHM Trigger: CATGTGTGACGCTGGAGAGCAGTGCGCAGTGAGGAA...CAATAAAGTTTGCGTTCCCCTCAGAGAGCGGATGGGCTCTTTCCCTGTTGCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| CDS-3UTR GCA 90 bp | AGAAATCTTTGCACACACACCAACACCATTCGAGGCATTCTCCTTCACACAATGGGCCCCTTTCCTCACTaGGCACTGCTCTCCAGCGTC | + |
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Preference number: 4 (lower is better) Translates to: RNLCTHTNTIRGILLHTMGPFPH*ALLSSV Trigger: GACGCTGGAGAGCAGTGCGCAGTGAGGAAAGGGGCC...CATTGTGTGAAGGAGAATGCCTCGAATGGTGTTGGTGTGTGTGCAAAGATTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| CDS-3UTR CCA 90 bp | TTGTGTGGCTTTAGGGCAATTTATTTTCCGGGTTGTGATGTCATCTACCCAAATAGCTCGGCGTCCTCCTaGGCACGGGCACCCAGCAAA | + |
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Preference number: 4 (lower is better) Translates to: LCGFRAIYFPGCDVIYPNSSASS*ARAPSK Trigger: TTTGCTGGGTGCCCGTGCCCAGGAGGACGCCGAGCT...ATTTGGGTAGATGACATCACAACCCGGAAAATAAATTGCCCTAAAGCCACACAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| CDS-3UTR CCA 90 bp | GATAAAACAAGAAAAGAAATCTTTGCACACACACCAACACCATTCGAGGCATTCAGCTCGGCGTCCTCCTaGGCACGGGCACCCAGCAAA | + |
|
Preference number: 4 (lower is better) Translates to: DKTRKEIFAHTPTPFEAFSSASS*ARAPSK Trigger: TTTGCTGGGTGCCCGTGCCCAGGAGGACGCCGAGCT...GAATGCCTCGAATGGTGTTGGTGTGTGTGCAAAGATTTCTTTTCTTGTTTTATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| CDS-3UTR CCA 90 bp | TTGTGTGGCTTTAGGGCAATTTATTTTCCGGGTTGTGATGTCATCTACCCAAATCCGAAGTTGCCGCCTTaGCAGCTCCTTCTCGTGGGA | + |
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Preference number: 4 (lower is better) Translates to: LCGFRAIYFPGCDVIYPNPKLPP*QLLLVG Trigger: TCCCACGAGAAGGAGCTGCCAAGGCGGCAACTTCGG...ATTTGGGTAGATGACATCACAACCCGGAAAATAAATTGCCCTAAAGCCACACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022150.8 |
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| CDS-3UTR TCA 90 bp | ACGCAAACTTTATTGTTGCTAAAGCCAGGCTCCAGGGATAATGGAGCGCTCCTTGAATGCGTTTACTCTTaGGCTTCTTCAGGACTTCTT | + |
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Preference number: 4 (lower is better) Translates to: TQTLLLLKPGSRDNGALLECVYS*ASSGLL Trigger: AAGAAGTCCTGAAGAAGCTCAAGAGTAAACGCATTC...AAGGAGCGCTCCATTATCCCTGGAGCCTGGCTTTAGCAACAATAAAGTTTGCGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| CDS-3UTR GCA 90 bp | GATAAAACAAGAAAAGAAATCTTTGCACACACACCAACACCATTCGAGGCATTCTTCCTCACTGCGCACTaGTCTCCAGCGTCACACATG | + |
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Preference number: 4 (lower is better) Translates to: DKTRKEIFAHTPTPFEAFFLTAH*SPASHM Trigger: CATGTGTGACGCTGGAGAGCAGTGCGCAGTGAGGAA...GAATGCCTCGAATGGTGTTGGTGTGTGTGCAAAGATTTCTTTTCTTGTTTTATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| CDS-3UTR GCA 90 bp | TGTCAAATCTTTTATTTTGAAGCAACAGGGAAAGAGCCCATCCGCTCTCTGAGGTCAAGAGGAAAGAATTaGAGGAAGTTCCTCGGGGAC | + |
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Preference number: 4 (lower is better) Translates to: CQIFYFEATGKEPIRSLRSRGKN*RKFLGD Trigger: GTCCCCGAGGAACTTCCTGCAATTCTTTCCTCTTGA...CCTCAGAGAGCGGATGGGCTCTTTCCCTGTTGCTTCAAAATAAAAGATTTGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| CDS-3UTR GCA 90 bp | AAGAAAAGAAATCTTTGCACACACACCAACACCATTCGAGGCATTCTCCTTCACTCAAGAGGAAAGAATTaGAGGAAGTTCCTCGGGGAC | + |
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Preference number: 4 (lower is better) Translates to: KKRNLCTHTNTIRGILLHSRGKN*RKFLGD Trigger: GTCCCCGAGGAACTTCCTGCAATTCTTTCCTCTTGA...GTGAAGGAGAATGCCTCGAATGGTGTTGGTGTGTGTGCAAAGATTTCTTTTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| CDS-3UTR TCA 90 bp | TGTCAAATCTTTTATTTTGAAGCAACAGGGAAAGAGCCCATCCGCTCTCTGAGGGAATGCGTTTACTCTTaGGCTTCTTCAGGACTTCTT | + |
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Preference number: 4 (lower is better) Translates to: CQIFYFEATGKEPIRSLRECVYS*ASSGLL Trigger: AAGAAGTCCTGAAGAAGCTCAAGAGTAAACGCATTC...CCTCAGAGAGCGGATGGGCTCTTTCCCTGTTGCTTCAAAATAAAAGATTTGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| CDS-3UTR GCA 90 bp | AACAAGAAAAGAAATCTTTGCACACACACCAACACCATTCGAGGCATTCTCCTTTTCTTCAGGACTTCTTaGAACGCTTCGATCTGCAAC | + |
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Preference number: 4 (lower is better) Translates to: NKKRNLCTHTNTIRGILLFFRTS*NASICN Trigger: GTTGCAGATCGAAGCGTTGCAAGAAGTCCTGAAGAA...AAGGAGAATGCCTCGAATGGTGTTGGTGTGTGTGCAAAGATTTCTTTTCTTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022150.8 |
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| CDS-3UTR CAA 90 bp | GGCTCCAGGGATAATGGAGCGCTCCTTTGGGGGAAAGAGGGAATATGGGAACCGGCCGGGAGCCCGAAGTaGCCGCCTTGGCAGCTCCTT | + |
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Preference number: 5 (lower is better) Translates to: GSRDNGALLWGKEGIWEPAGSPK*PPWQLL Trigger: AAGGAGCTGCCAAGGCGGCAACTTCGGGCTCCCGGC...CGGTTCCCATATTCCCTCTTTCCCCCAAAGGAGCGCTCCATTATCCCTGGAGCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022150.8 |
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| CDS GCA 90 bp | CGTTTACTCTTGAGCTTCTTCAGGACTTCTTGCAACGCTTCGATCTaGAACATAGCGCCGGGAGCCCGAAGTTGCCGCCTTGGCAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: RLLLSFFRTSCNASI*NIAPGARSCRLGSS Trigger: GGAGCTGCCAAGGCGGCAACTTCGGGCTCCCGGCGCTATGTTGCAGATCGAAGCGTTGCAAGAAGTCCTGAAGAAGCTCAAGAGTAAACG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022150.8 |
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| CDS-3UTR CAA 90 bp | ACGCAAACTTTATTGTTGCTAAAGCCAGGCTCCAGGGATAATGGAGCGCTCCTTCCCGAAGTTGCCGCCTaGGCAGCTCCTTCTCGTGGG | + |
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Preference number: 5 (lower is better) Translates to: TQTLLLLKPGSRDNGALLPEVAA*AAPSRG Trigger: CCCACGAGAAGGAGCTGCCAAGGCGGCAACTTCGGG...AAGGAGCGCTCCATTATCCCTGGAGCCTGGCTTTAGCAACAATAAAGTTTGCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022150.8 |
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| CDS TCA 90 bp | GGACTTGGCCGTACTTCTTCTCGTAGATCGGAATGCGTTTACTCTTaGGCTTCTTCAGGACTTCTTGCAACGCTTCGATCAGCTCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: GLGRTSSRRSECVYS*ASSGLLATLRSAPS Trigger: AGAAGGAGCTGATCGAAGCGTTGCAAGAAGTCCTGAAGAAGCTCAAGAGTAAACGCATTCCGATCTACGAGAAGAAGTACGGCCAAGTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224142.2 |
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| CDS-3UTR CAA 90 bp | GAAGCAACAGGGAAAGAGCCCATCCGCTCTCTGAGGGGAACGCAAACTTTATTGGGAATGCGTTTACTCTaGAGCTTCTTCAGGACTTCT | + |
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Preference number: 5 (lower is better) Translates to: EATGKEPIRSLRGTQTLLGMRLL*SFFRTS Trigger: AGAAGTCCTGAAGAAGCTCAAGAGTAAACGCATTCC...CAATAAAGTTTGCGTTCCCCTCAGAGAGCGGATGGGCTCTTTCCCTGTTGCTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| CDS-3UTR CAA 90 bp | AGAAATCTTTGCACACACACCAACACCATTCGAGGCATTCTCCTTCACACAATGGTCACACATGGGGACTaGGCCGTACTTCTTCTCGTA | + |
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Preference number: 5 (lower is better) Translates to: RNLCTHTNTIRGILLHTMVTHGD*AVLLLV Trigger: TACGAGAAGAAGTACGGCCAAGTCCCCATGTGTGAC...CATTGTGTGAAGGAGAATGCCTCGAATGGTGTTGGTGTGTGTGCAAAGATTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| CDS-3UTR CAA 90 bp | TTGTGTGGCTTTAGGGCAATTTATTTTCCGGGTTGTGATGTCATCTACCCAAATCTTCTTCAGGACTTCTaGCAACGCTTCGATCTGCAA | + |
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Preference number: 5 (lower is better) Translates to: LCGFRAIYFPGCDVIYPNLLQDF*QRFDLQ Trigger: TTGCAGATCGAAGCGTTGCAAGAAGTCCTGAAGAAG...ATTTGGGTAGATGACATCACAACCCGGAAAATAAATTGCCCTAAAGCCACACAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022150.8 |
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| CDS-3UTR CAA 90 bp | GATAAAACAAGAAAAGAAATCTTTGCACACACACCAACACCATTCGAGGCATTCGGAATGCGTTTACTCTaGAGCTTCTTCAGGACTTCT | + |
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Preference number: 5 (lower is better) Translates to: DKTRKEIFAHTPTPFEAFGMRLL*SFFRTS Trigger: AGAAGTCCTGAAGAAGCTCAAGAGTAAACGCATTCC...GAATGCCTCGAATGGTGTTGGTGTGTGTGCAAAGATTTCTTTTCTTGTTTTATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| CDS CAA 72 bp | CGCTTCGATCTGCAACATAGCGCCGGGAGCCCGAAGTaGCCGCCTTGGCAGCTCCTTCTCGTGGGACGCATC | + |
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Preference number: 6 (lower is better) Translates to: RFDLQHSAGSPK*PPWQLLLVGRI Trigger: GATGCGTCCCACGAGAAGGAGCTGCCAAGGCGGCAACTTCGGGCTCCCGGCGCTATGTTGCAGATCGAAGCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022150.8 |
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| CDS GCA 72 bp | GCTTCGATCTGCAACATAGCGCCGGGAGCCCGAAGTTaGCGCCTTGGCAGCTCCTTCTCGTGGGACGCATCA | + |
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Preference number: 6 (lower is better) Translates to: ASICNIAPGARS*RLGSSFSWDAS Trigger: TGATGCGTCCCACGAGAAGGAGCTGCCAAGGCGGCAACTTCGGGCTCCCGGCGCTATGTTGCAGATCGAAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022150.8 |
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| CDS GCA 72 bp | TTGAGCTTCTTCAGGACTTCTTGCAACGCTTCGATCTaGAACATAGCGCCGGGAGCCCGAAGTTGCCGCCTT | + |
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Preference number: 6 (lower is better) Translates to: LSFFRTSCNASI*NIAPGARSCRL Trigger: AAGGCGGCAACTTCGGGCTCCCGGCGCTATGTTGCAGATCGAAGCGTTGCAAGAAGTCCTGAAGAAGCTCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022150.8 |
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| CDS CAA 72 bp | CACTGCGCACTGCTCTCCAGCGTCACACATGGGGACTaGGCCGTACTTCTTCTCGTAGATCGGAATGCGTTT | + |
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Preference number: 6 (lower is better) Translates to: HCALLSSVTHGD*AVLLLVDRNAF Trigger: AAACGCATTCCGATCTACGAGAAGAAGTACGGCCAAGTCCCCATGTGTGACGCTGGAGAGCAGTGCGCAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022150.8 ENSMUST00000224142.2 |
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| CDS GCA 72 bp | GGAATGCGTTTACTCTTGAGCTTCTTCAGGACTTCTTaGAACGCTTCGATCTGCAACATAGCGCCGGGAGCC | + |
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Preference number: 6 (lower is better) Translates to: GMRLLLSFFRTS*NASICNIAPGA Trigger: GGCTCCCGGCGCTATGTTGCAGATCGAAGCGTTGCAAGAAGTCCTGAAGAAGCTCAAGAGTAAACGCATTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022150.8 |
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| CDS CAA 72 bp | CGGAATGCGTTTACTCTTGAGCTTCTTCAGGACTTCTaGCAACGCTTCGATCTGCAACATAGCGCCGGGAGC | + |
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Preference number: 6 (lower is better) Translates to: RNAFTLELLQDF*QRFDLQHSAGS Trigger: GCTCCCGGCGCTATGTTGCAGATCGAAGCGTTGCAAGAAGTCCTGAAGAAGCTCAAGAGTAAACGCATTCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022150.8 |
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| CDS CAA 72 bp | CGGAATGCGTTTACTCTTGAGCTTCTTCAGGACTTCTaGCAACGCTTCGATCAGCTCCTTCTCGTGGGACGC | + |
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Preference number: 6 (lower is better) Translates to: RNAFTLELLQDF*QRFDQLLLVGR Trigger: GCGTCCCACGAGAAGGAGCTGATCGAAGCGTTGCAAGAAGTCCTGAAGAAGCTCAAGAGTAAACGCATTCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224142.2 |
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| CDS CAA 90 bp | CTCGTAGATCGGAATGCGTTTACTCTTGAGCTTCTTCAGGACTTCTaGCAACGCTTCGATCTGCAACATAGCGCCGGGAGCCCGAAGTTG | + |
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Preference number: 6 (lower is better) Translates to: LVDRNAFTLELLQDF*QRFDLQHSAGSPKL Trigger: CAACTTCGGGCTCCCGGCGCTATGTTGCAGATCGAAGCGTTGCAAGAAGTCCTGAAGAAGCTCAAGAGTAAACGCATTCCGATCTACGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022150.8 |
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| CDS GCA 72 bp | GGAATGCGTTTACTCTTGAGCTTCTTCAGGACTTCTTaGAACGCTTCGATCAGCTCCTTCTCGTGGGACGCA | + |
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Preference number: 6 (lower is better) Translates to: GMRLLLSFFRTS*NASISSFSWDA Trigger: TGCGTCCCACGAGAAGGAGCTGATCGAAGCGTTGCAAGAAGTCCTGAAGAAGCTCAAGAGTAAACGCATTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224142.2 |
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| CDS TCA 72 bp | CGTACTTCTTCTCGTAGATCGGAATGCGTTTACTCTTaGGCTTCTTCAGGACTTCTTGCAACGCTTCGATCT | + |
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Preference number: 6 (lower is better) Translates to: RTSSRRSECVYS*ASSGLLATLRS Trigger: AGATCGAAGCGTTGCAAGAAGTCCTGAAGAAGCTCAAGAGTAAACGCATTCCGATCTACGAGAAGAAGTACG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022150.8 |
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| CDS TCA 72 bp | CGTACTTCTTCTCGTAGATCGGAATGCGTTTACTCTTaGGCTTCTTCAGGACTTCTTGCAACGCTTCGATCA | + |
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Preference number: 6 (lower is better) Translates to: RTSSRRSECVYS*ASSGLLATLRS Trigger: TGATCGAAGCGTTGCAAGAAGTCCTGAAGAAGCTCAAGAGTAAACGCATTCCGATCTACGAGAAGAAGTACG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224142.2 |
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