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Pregenerated sensors for CARLR (Mus musculus)

Ensembl gene IDs: ENSMUSG00000097638

Ensembl transcript IDs: ENSMUST00000181515.2

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGTCTGGTGTCTCCACATCTGGCCTGGGTAGAGATGCGTCTTCCTTaGGAGAATCTTTTGCAGTACGCAGCTCCATCGGAACCACGCCTC +
Preference number: 1 (lower is better)
Translates to: CLVSPHLAWVEMRLP*ENLLQYAAPSEPRL
Trigger: GAGGCGTGGTTCCGATGGAGCTGCGTACTGCAAAAGATTCTCCCAAGGAAGACGCATCTCTACCCAGGCCAGATGTGGAGACACCAGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181515.2
3UTR TCA 90 bp TCCTTCGCTGGTCTCAATGCTAATCAGCCCTTGCAGCTGCTTGGATaGGCTGGGCACATCTCTCCAAGAATGTCTGGTGTCTCCACATCT +
Preference number: 1 (lower is better)
Translates to: SFAGLNANQPLQLLG*AGHISPRMSGVSTS
Trigger: AGATGTGGAGACACCAGACATTCTTGGAGAGATGTGCCCAGCTCATCCAAGCAGCTGCAAGGGCTGATTAGCATTGAGACCAGCGAAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181515.2
3UTR CCA 90 bp CTGGGCACATCTCTCCAAGAATGTCTGGTGTCTCCACATCTGGCCTaGGTAGAGATGCGTCTTCCTTGGGAGAATCTTTTGCAGTACGCA +
Preference number: 1 (lower is better)
Translates to: LGTSLQECLVSPHLA*VEMRLPWENLLQYA
Trigger: TGCGTACTGCAAAAGATTCTCCCAAGGAAGACGCATCTCTACCCAGGCCAGATGTGGAGACACCAGACATTCTTGGAGAGATGTGCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181515.2
3UTR CAA 90 bp CCTTGTCCTTCGCTGGTCTCAATGCTAATCAGCCCTTGCAGCTGCTaGGATGAGCTGGGCACATCTCTCCAAGAATGTCTGGTGTCTCCA +
Preference number: 2 (lower is better)
Translates to: PCPSLVSMLISPCSC*DELGTSLQECLVSP
Trigger: TGGAGACACCAGACATTCTTGGAGAGATGTGCCCAGCTCATCCAAGCAGCTGCAAGGGCTGATTAGCATTGAGACCAGCGAAGGACAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181515.2
3UTR-3UTR CCA 90 bp TGGATGAGCTGGGCACATCTCTCCAAGAATGTCTGGTGTCTCCACATCTGGCCTGAGATGCGTCTTCCTTaGGAGAATCTTTTGCAGTAC +
Preference number: 2 (lower is better)
Translates to: WMSWAHLSKNVWCLHIWPEMRLP*ENLLQY
Trigger: GTACTGCAAAAGATTCTCCCAAGGAAGACGCATCTC...AGGCCAGATGTGGAGACACCAGACATTCTTGGAGAGATGTGCCCAGCTCATCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181515.2
3UTR TCA 72 bp GGTCTCAATGCTAATCAGCCCTTGCAGCTGCTTGGATaGGCTGGGCACATCTCTCCAAGAATGTCTGGTGTC +
Preference number: 3 (lower is better)
Translates to: GLNANQPLQLLG*AGHISPRMSGV
Trigger: GACACCAGACATTCTTGGAGAGATGTGCCCAGCTCATCCAAGCAGCTGCAAGGGCTGATTAGCATTGAGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181515.2
3UTR CCA 72 bp TCTCCACATCTGGCCTGGGTAGAGATGCGTCTTCCTTaGGAGAATCTTTTGCAGTACGCAGCTCCATCGGAA +
Preference number: 3 (lower is better)
Translates to: SPHLAWVEMRLP*ENLLQYAAPSE
Trigger: TTCCGATGGAGCTGCGTACTGCAAAAGATTCTCCCAAGGAAGACGCATCTCTACCCAGGCCAGATGTGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181515.2
3UTR CCA 72 bp TCTCTCCAAGAATGTCTGGTGTCTCCACATCTGGCCTaGGTAGAGATGCGTCTTCCTTGGGAGAATCTTTTG +
Preference number: 3 (lower is better)
Translates to: SLQECLVSPHLA*VEMRLPWENLL
Trigger: CAAAAGATTCTCCCAAGGAAGACGCATCTCTACCCAGGCCAGATGTGGAGACACCAGACATTCTTGGAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181515.2
3UTR GCA 72 bp TATGCCATCGACATCTCTTTGTTAAGCAAGCCTTTATaGTATAACCCACAATCATCATACTTAAATCCCGTT +
Preference number: 3 (lower is better)
Translates to: YAIDISLLSKPL*YNPQSSYLNPV
Trigger: AACGGGATTTAAGTATGATGATTGTGGGTTATAGCATAAAGGCTTGCTTAACAAAGAGATGTCGATGGCATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181515.2
3UTR CAA 72 bp GCCTGGGTAGAGATGCGTCTTCCTTGGGAGAATCTTTaGCAGTACGCAGCTCCATCGGAACCACGCCTCGCG +
Preference number: 4 (lower is better)
Translates to: AWVEMRLPWENL*QYAAPSEPRLA
Trigger: CGCGAGGCGTGGTTCCGATGGAGCTGCGTACTGCAAAAGATTCTCCCAAGGAAGACGCATCTCTACCCAGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181515.2
3UTR CAA 72 bp TCGCTGGTCTCAATGCTAATCAGCCCTTGCAGCTGCTaGGATGAGCTGGGCACATCTCTCCAAGAATGTCTG +
Preference number: 4 (lower is better)
Translates to: SLVSMLISPCSC*DELGTSLQECL
Trigger: CAGACATTCTTGGAGAGATGTGCCCAGCTCATCCAAGCAGCTGCAAGGGCTGATTAGCATTGAGACCAGCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000181515.2
CDS-3UTR TCA 90 bp TGGATGAGCTGGGCACATCTCTCCAAGAATGTCTGGTGTCTCCACATCTGGCCTCAACGTAGATCGAGATaGAGACCAGGAAAAGCAGGA +
Preference number: 4 (lower is better)
Translates to: WMSWAHLSKNVWCLHIWPQRRSR*RPGKAG
Trigger: TCCTGCTTTTCCTGGTCTTCATCTCGATCTACGTTG...AGGCCAGATGTGGAGACACCAGACATTCTTGGAGAGATGTGCCCAGCTCATCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181515.2
CDS-3UTR CAA 90 bp TGGATGAGCTGGGCACATCTCTCCAAGAATGTCTGGTGTCTCCACATCTGGCCTGTTTTGGGACAGAGGTaGTGGGCCAGGATTAGAGCC +
Preference number: 5 (lower is better)
Translates to: WMSWAHLSKNVWCLHIWPVLGQR*WARIRA
Trigger: GGCTCTAATCCTGGCCCACAACCTCTGTCCCAAAAC...AGGCCAGATGTGGAGACACCAGACATTCTTGGAGAGATGTGCCCAGCTCATCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000181515.2