RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CARD14 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000013483

Ensembl transcript IDs: ENSMUST00000053245.7, ENSMUST00000106250.8

Found 306 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGAAGGGCCAGAACCCACAAAGCTATTCCTGTTGTCACAGGAGGTTaGGGCACTGGCTCTGAGCAGGTCTCAGGGAGTACCCCCACACGG +
Preference number: 1 (lower is better)
Translates to: GRARTHKAIPVVTGG*GTGSEQVSGSTPTR
Trigger: CCGTGTGGGGGTACTCCCTGAGACCTGCTCAGAGCCAGTGCCCCAACCTCCTGTGACAACAGGAATAGCTTTGTGGGTTCTGGCCCTTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR CCA 90 bp CTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTaGCTGTTAGCAGCTGAGTCAGCTGTGCCCACGGTGCTCCAGAGT +
Preference number: 1 (lower is better)
Translates to: LCTTAPSFADVCGST*LLAAESAVPTVLQS
Trigger: ACTCTGGAGCACCGTGGGCACAGCTGACTCAGCTGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR CCA 90 bp GCTCATGAAGGGTCAGTTGGCTCTGGGATATGCACCAAAGCAACCTaGGGTTTGGGGTTAGGCACAGAGGCAGTGAGTCAAAGAGCCACT +
Preference number: 1 (lower is better)
Translates to: AHEGSVGSGICTKAT*GLGLGTEAVSQRAT
Trigger: AGTGGCTCTTTGACTCACTGCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCCAACTGACCCTTCATGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR GCA 90 bp GGGGTTAGGCACAGAGGCAGTGAGTCAAAGAGCCACTCAAGTCTGTaGACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGG +
Preference number: 1 (lower is better)
Translates to: GVRHRGSESKSHSSL*TTAPSFADVCGSTW
Trigger: CCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGAGTGGCTCTTTGACTCACTGCCTCTGTGCCTAACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR GCA 90 bp GAGAGAGAGTTCTTTGCTCATGAAGGGTCAGTTGGCTCTGGGATATaGACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCAGTG +
Preference number: 1 (lower is better)
Translates to: EREFFAHEGSVGSGI*TKATWGLGLGTEAV
Trigger: CACTGCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCCAACTGACCCTTCATGAGCAAAGAACTCTCTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR TCA 90 bp GCCCTGGGCAGGAAGGACTGCTCCAGCGAGCTTGCAAGGTTCCTTTaGCATCAGAAACATAAAAGGAAGGGCCAGAACCCACAAAGCTAT +
Preference number: 1 (lower is better)
Translates to: ALGRKDCSSELARFL*HQKHKRKGQNPQSY
Trigger: ATAGCTTTGTGGGTTCTGGCCCTTCCTTTTATGTTTCTGATGTCAAAGGAACCTTGCAAGCTCGCTGGAGCAGTCCTTCCTGCCCAGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR-3UTR CCA 90 bp CCACGGTGCTCCAGAGTCAGGCCCCCGCCCTGGGCAGGAAGGACTGCTCCAGCGTTACACCTTGATTTCTaGGGGCACCTGAGGTCAGAC +
Preference number: 2 (lower is better)
Translates to: PRCSRVRPPPWAGRTAPALHLDF*GHLRSD
Trigger: GTCTGACCTCAGGTGCCCCCAGAAATCAAGGTGTAA...CGCTGGAGCAGTCCTTCCTGCCCAGGGCGGGGGCCTGACTCTGGAGCACCGTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR-3UTR TCA 90 bp CCACGGTGCTCCAGAGTCAGGCCCCCGCCCTGGGCAGGAAGGACTGCTCCAGCGCTTGCAAGGTTCCTTTaGCATCAGAAACATAAAAGG +
Preference number: 2 (lower is better)
Translates to: PRCSRVRPPPWAGRTAPALARFL*HQKHKR
Trigger: CCTTTTATGTTTCTGATGTCAAAGGAACCTTGCAAG...CGCTGGAGCAGTCCTTCCTGCCCAGGGCGGGGGCCTGACTCTGGAGCACCGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR-3UTR TCA 90 bp TTGTCACAGGAGGTTGGGGCACTGGCTCTGAGCAGGTCTCAGGGAGTACCCCCACCAGGCCATGCTGTGTaGAGGTGGCTTCGTCATTTA +
Preference number: 2 (lower is better)
Translates to: LSQEVGALALSRSQGVPPPGHAV*RWLRHL
Trigger: TAAATGACGAAGCCACCTTCACACAGCATGGCCTGG...TGGGGGTACTCCCTGAGACCTGCTCAGAGCCAGTGCCCCAACCTCCTGTGACAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR-3UTR TCA 90 bp GGCTCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCATTGGCTGTTAGCAGCTaGGTCAGCTGTGCCCACGGT +
Preference number: 2 (lower is better)
Translates to: GSGICTKATWGLGLGTEALAVSS*VSCAHG
Trigger: ACCGTGGGCACAGCTGACTCAGCTGCTAACAGCCAA...TGCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR-3UTR CCA 90 bp ACAGAGGCAGTGAGTCAAAGAGCCACTCAAGTCTGTGCACTACAGCACCTTCATGTCAGGCCCCCGCCCTaGGCAGGAAGGACTGCTCCA +
Preference number: 2 (lower is better)
Translates to: TEAVSQRATQVCALQHLHVRPPP*AGRTAP
Trigger: TGGAGCAGTCCTTCCTGCCCAGGGCGGGGGCCTGAC...ATGAAGGTGCTGTAGTGCACAGACTTGAGTGGCTCTTTGACTCACTGCCTCTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR-3UTR TCA 90 bp TTGTCACAGGAGGTTGGGGCACTGGCTCTGAGCAGGTCTCAGGGAGTACCCCCATCGTCATTTACACCTTaGTTTCTGGGGGCACCTGAG +
Preference number: 2 (lower is better)
Translates to: LSQEVGALALSRSQGVPPSSFTP*FLGAPE
Trigger: CTCAGGTGCCCCCAGAAATCAAGGTGTAAATGACGA...TGGGGGTACTCCCTGAGACCTGCTCAGAGCCAGTGCCCCAACCTCCTGTGACAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR-3UTR GCA 90 bp AAGGGCCAGAACCCACAAAGCTATTCCTGTTGTCACAGGAGGTTGGGGCACTGGCATCAGCCCAGGCCATaGTGTGTGAAGGTGGCTTCG +
Preference number: 2 (lower is better)
Translates to: KGQNPQSYSCCHRRLGHWHQPRP*CVKVAS
Trigger: CGAAGCCACCTTCACACAGCATGGCCTGGGCTGATG...CCAGTGCCCCAACCTCCTGTGACAACAGGAATAGCTTTGTGGGTTCTGGCCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR-3UTR GCA 90 bp GTTGGCTCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGCATCAGCCCAGGCCATaGTGTGTGAAGGTGGCTTCG +
Preference number: 2 (lower is better)
Translates to: VGSGICTKATWGLGLGTEHQPRP*CVKVAS
Trigger: CGAAGCCACCTTCACACAGCATGGCCTGGGCTGATG...CTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR-3UTR CCA 90 bp ATGGGGGCTTCACCCAAGTGTGGCGCAATGCAGCCTGGGAAGGACTGGGGGAAAGACCAGAGAAGGAAGTaGGGTTGTTTGCTGACAGCA +
Preference number: 2 (lower is better)
Translates to: MGASPKCGAMQPGKDWGKDQRRK*GCLLTA
Trigger: TGCTGTCAGCAAACAACCCCACTTCCTTCTCTGGTC...TTTCCCCCAGTCCTTCCCAGGCTGCATTGCGCCACACTTGGGTGAAGCCCCCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR CAA 90 bp GAAGGGTCAGTTGGCTCTGGGATATGCACCAAAGCAACCTGGGGTTaGGGGTTAGGCACAGAGGCAGTGAGTCAAAGAGCCACTCAAGTC +
Preference number: 2 (lower is better)
Translates to: EGSVGSGICTKATWG*GLGTEAVSQRATQV
Trigger: GACTTGAGTGGCTCTTTGACTCACTGCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCCAACTGACCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR-3UTR TCA 90 bp TGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCAATTTCTGGGGGCACCTaGGGTCAGACCCCGACCAGA +
Preference number: 2 (lower is better)
Translates to: CTTAPSFADVCGSTWLLAISGGT*GQTPTR
Trigger: TCTGGTCGGGGTCTGACCTCAGGTGCCCCCAGAAAT...TGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR-3UTR TCA 90 bp TCAAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGATTTCTGGGGGCACCTaGGGTCAGACCCCGACCAGA +
Preference number: 2 (lower is better)
Translates to: SSLCTTAPSFADVCGSTWISGGT*GQTPTR
Trigger: TCTGGTCGGGGTCTGACCTCAGGTGCCCCCAGAAAT...CCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR-3UTR CCA 90 bp GGCTCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCATTACACCTTGATTTCTaGGGGCACCTGAGGTCAGAC +
Preference number: 2 (lower is better)
Translates to: GSGICTKATWGLGLGTEALHLDF*GHLRSD
Trigger: GTCTGACCTCAGGTGCCCCCAGAAATCAAGGTGTAA...TGCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR-3UTR CCA 90 bp CCACTCAAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACGTTGTCACAGGAGGTTaGGGCACTGGCTCTGAGCAG +
Preference number: 2 (lower is better)
Translates to: PLKSVHYSTFICRCLWQHVVTGG*GTGSEQ
Trigger: CTGCTCAGAGCCAGTGCCCCAACCTCCTGTGACAAC...GTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGAGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR CAA 90 bp GTGTGGCGCAATGCAGCCTGGGAAGGACTGGGGGAAATGTCAGTTTaGAGAGAGAGTTCTTTGCTCATGAAGGGTCAGTTGGCTCTGGGA +
Preference number: 2 (lower is better)
Translates to: VWRNAAWEGLGEMSV*RESSLLMKGQLALG
Trigger: TCCCAGAGCCAACTGACCCTTCATGAGCAAAGAACTCTCTCTCAAAACTGACATTTCCCCCAGTCCTTCCCAGGCTGCATTGCGCCACAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR-3UTR TCA 90 bp ACTCAAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTTTGGGGCACTGGCTCTaGGCAGGTCTCAGGGAGTAC +
Preference number: 2 (lower is better)
Translates to: TQVCALQHLHLQMSVAALLGHWL*AGLREY
Trigger: GTACTCCCTGAGACCTGCTCAGAGCCAGTGCCCCAA...AAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR-3UTR CCA 90 bp AACCTGGGGTTTGGGGTTAGGCACAGAGGCAGTGAGTCAAAGAGCCACTCAAGTGACCAGAGAAGGAAGTaGGGTTGTTTGCTGACAGCA +
Preference number: 2 (lower is better)
Translates to: NLGFGVRHRGSESKSHSSDQRRK*GCLLTA
Trigger: TGCTGTCAGCAAACAACCCCACTTCCTTCTCTGGTC...ACTTGAGTGGCTCTTTGACTCACTGCCTCTGTGCCTAACCCCAAACCCCAGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR CAA 90 bp GCCTGGGAAGGACTGGGGGAAATGTCAGTTTTGAGAGAGAGTTCTTaGCTCATGAAGGGTCAGTTGGCTCTGGGATATGCACCAAAGCAA +
Preference number: 2 (lower is better)
Translates to: AWEGLGEMSVLRESS*LMKGQLALGYAPKQ
Trigger: TTGCTTTGGTGCATATCCCAGAGCCAACTGACCCTTCATGAGCAAAGAACTCTCTCTCAAAACTGACATTTCCCCCAGTCCTTCCCAGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR-3UTR TCA 90 bp AGAAACATAAAAGGAAGGGCCAGAACCCACAAAGCTATTCCTGTTGTCACAGGATCGTCATTTACACCTTaGTTTCTGGGGGCACCTGAG +
Preference number: 2 (lower is better)
Translates to: RNIKGRARTHKAIPVVTGSSFTP*FLGAPE
Trigger: CTCAGGTGCCCCCAGAAATCAAGGTGTAAATGACGA...TCCTGTGACAACAGGAATAGCTTTGTGGGTTCTGGCCCTTCCTTTTATGTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR-3UTR GCA 90 bp GGGGAAATGTCAGTTTTGAGAGAGAGTTCTTTGCTCATGAAGGGTCAGTTGGCTTACAGCACCTTCATTTaGAGATGTCTGTGGCAGCAC +
Preference number: 2 (lower is better)
Translates to: GEMSVLRESSLLMKGQLAYSTFI*RCLWQH
Trigger: GTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTA...AGCCAACTGACCCTTCATGAGCAAAGAACTCTCTCTCAAAACTGACATTTCCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR CCA 72 bp CTGTGCCCACGGTGCTCCAGAGTCAGGCCCCCGCCCTaGGCAGGAAGGACTGCTCCAGCGAGCTTGCAAGGT +
Preference number: 3 (lower is better)
Translates to: LCPRCSRVRPPP*AGRTAPASLQG
Trigger: ACCTTGCAAGCTCGCTGGAGCAGTCCTTCCTGCCCAGGGCGGGGGCCTGACTCTGGAGCACCGTGGGCACAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR TCA 72 bp TATTCCTGTTGTCACAGGAGGTTGGGGCACTGGCTCTaGGCAGGTCTCAGGGAGTACCCCCACACGGCAGAA +
Preference number: 3 (lower is better)
Translates to: YSCCHRRLGHWL*AGLREYPHTAE
Trigger: TTCTGCCGTGTGGGGGTACTCCCTGAGACCTGCTCAGAGCCAGTGCCCCAACCTCCTGTGACAACAGGAATA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR-3UTR CAA 90 bp ATGGGGGCTTCACCCAAGTGTGGCGCAATGCAGCCTGGGAAGGACTGGGGGAAAGAGAAGGAAGTGGGGTaGTTTGCTGACAGCATTGAC +
Preference number: 3 (lower is better)
Translates to: MGASPKCGAMQPGKDWGKEKEVG*FADSID
Trigger: GTCAATGCTGTCAGCAAACAACCCCACTTCCTTCTC...TTTCCCCCAGTCCTTCCCAGGCTGCATTGCGCCACACTTGGGTGAAGCCCCCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR CCA 72 bp CTCAGTTTATGGCTAGATGGGGGCTTCACCCAAGTGTaGCGCAATGCAGCCTGGGAAGGACTGGGGGAAATG +
Preference number: 3 (lower is better)
Translates to: LSLWLDGGFTQV*RNAAWEGLGEM
Trigger: CATTTCCCCCAGTCCTTCCCAGGCTGCATTGCGCCACACTTGGGTGAAGCCCCCATCTAGCCATAAACTGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR TCA 72 bp CCATGCTGTGTGAAGGTGGCTTCGTCATTTACACCTTaGTTTCTGGGGGCACCTGAGGTCAGACCCCGACCA +
Preference number: 3 (lower is better)
Translates to: PCCVKVASSFTP*FLGAPEVRPRP
Trigger: TGGTCGGGGTCTGACCTCAGGTGCCCCCAGAAATCAAGGTGTAAATGACGAAGCCACCTTCACACAGCATGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR GCA 72 bp ATGGCTAGATGGGGGCTTCACCCAAGTGTGGCGCAATaGAGCCTGGGAAGGACTGGGGGAAATGTCAGTTTT +
Preference number: 3 (lower is better)
Translates to: MARWGLHPSVAQ*SLGRTGGNVSF
Trigger: AAAACTGACATTTCCCCCAGTCCTTCCCAGGCTGCATTGCGCCACACTTGGGTGAAGCCCCCATCTAGCCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR CCA 72 bp AGAACCCACAAAGCTATTCCTGTTGTCACAGGAGGTTaGGGCACTGGCTCTGAGCAGGTCTCAGGGAGTACC +
Preference number: 3 (lower is better)
Translates to: RTHKAIPVVTGG*GTGSEQVSGST
Trigger: GGTACTCCCTGAGACCTGCTCAGAGCCAGTGCCCCAACCTCCTGTGACAACAGGAATAGCTTTGTGGGTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR CCA 72 bp ACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTaGCTGTTAGCAGCTGAGTCAGCTGTGCCCACGGTG +
Preference number: 3 (lower is better)
Translates to: TAPSFADVCGST*LLAAESAVPTV
Trigger: CACCGTGGGCACAGCTGACTCAGCTGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR CCA 72 bp GGGTCAGTTGGCTCTGGGATATGCACCAAAGCAACCTaGGGTTTGGGGTTAGGCACAGAGGCAGTGAGTCAA +
Preference number: 3 (lower is better)
Translates to: GSVGSGICTKAT*GLGLGTEAVSQ
Trigger: TTGACTCACTGCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCCAACTGACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR-3UTR CAA 90 bp TCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCAGTGTGTTTGCTGACAGCATaGACAGACACACAGAGGTCC +
Preference number: 3 (lower is better)
Translates to: SGICTKATWGLGLGTEAVCLLTA*TDTQRS
Trigger: GGACCTCTGTGTGTCTGTCAATGCTGTCAGCAAACA...CACTGCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR GCA 72 bp GAGCCACTCAAGTCTGTGCACTACAGCACCTTCATTTaGAGATGTCTGTGGCAGCACTTGGCTGTTAGCAGC +
Preference number: 3 (lower is better)
Translates to: EPLKSVHYSTFI*RCLWQHLAVSS
Trigger: GCTGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGAGTGGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR TCA 72 bp ATTTTCCGGTCCTCCATCAGCCCAGGCCATGCTGTGTaGAGGTGGCTTCGTCATTTACACCTTGATTTCTGG +
Preference number: 3 (lower is better)
Translates to: IFRSSISPGHAV*RWLRHLHLDFW
Trigger: CCAGAAATCAAGGTGTAAATGACGAAGCCACCTTCACACAGCATGGCCTGGGCTGATGGAGGACCGGAAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR GCA 72 bp CACAGAGGCAGTGAGTCAAAGAGCCACTCAAGTCTGTaGACTACAGCACCTTCATTTGCAGATGTCTGTGGC +
Preference number: 3 (lower is better)
Translates to: HRGSESKSHSSL*TTAPSFADVCG
Trigger: GCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGAGTGGCTCTTTGACTCACTGCCTCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR GCA 72 bp TTCTTTGCTCATGAAGGGTCAGTTGGCTCTGGGATATaGACCAAAGCAACCTGGGGTTTGGGGTTAGGCACA +
Preference number: 3 (lower is better)
Translates to: FFAHEGSVGSGI*TKATWGLGLGT
Trigger: TGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCCAACTGACCCTTCATGAGCAAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR-3UTR CAA 90 bp AAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTTGTTTGCTGACAGCATaGACAGACACACAGAGGTCC +
Preference number: 3 (lower is better)
Translates to: KSVHYSTFICRCLWQHLACLLTA*TDTQRS
Trigger: GGACCTCTGTGTGTCTGTCAATGCTGTCAGCAAACA...AGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR TCA 72 bp AGGAAGGACTGCTCCAGCGAGCTTGCAAGGTTCCTTTaGCATCAGAAACATAAAAGGAAGGGCCAGAACCCA +
Preference number: 3 (lower is better)
Translates to: RKDCSSELARFL*HQKHKRKGQNP
Trigger: TGGGTTCTGGCCCTTCCTTTTATGTTTCTGATGTCAAAGGAACCTTGCAAGCTCGCTGGAGCAGTCCTTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp CCACGGTGCTCCAGAGTCAGGCCCCCGCCCTGGGCAGGAAGGACTGCTCCAGCGGGCTGTGGCAGCGTGTaGCAGCCAGCTCCTTCTCTC +
Preference number: 4 (lower is better)
Translates to: PRCSRVRPPPWAGRTAPAGCGSV*QPAPSL
Trigger: GAGAGAAGGAGCTGGCTGCCACACGCTGCCACAGCC...CGCTGGAGCAGTCCTTCCTGCCCAGGGCGGGGGCCTGACTCTGGAGCACCGTGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp CCACGGTGCTCCAGAGTCAGGCCCCCGCCCTGGGCAGGAAGGACTGCTCCAGCGCGGTCCACCAGCTCTTaGTTGCTCTCCCTGGCCTCA +
Preference number: 4 (lower is better)
Translates to: PRCSRVRPPPWAGRTAPARSTSS*LLSLAS
Trigger: TGAGGCCAGGGAGAGCAAGCAAGAGCTGGTGGACCG...CGCTGGAGCAGTCCTTCCTGCCCAGGGCGGGGGCCTGACTCTGGAGCACCGTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp CCACGGTGCTCCAGAGTCAGGCCCCCGCCCTGGGCAGGAAGGACTGCTCCAGCGTTCTGTGCCTTCTCCTaGGCCAGCTCCTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: PRCSRVRPPPWAGRTAPAFCAFS*ASSSCR
Trigger: CCTGCAGGAGGAGCTGGCCCAGGAGAAGGCACAGAA...CGCTGGAGCAGTCCTTCCTGCCCAGGGCGGGGGCCTGACTCTGGAGCACCGTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp CCTGTTGTCACAGGAGGTTGGGGCACTGGCTCTGAGCAGGTCTCAGGGAGTACCGCTGGCCCAGCACCTTaGCCTGGCGCAGGTAGGGGG +
Preference number: 4 (lower is better)
Translates to: PVVTGGWGTGSEQVSGSTAGPAP*PGAGRG
Trigger: CCCCCTACCTGCGCCAGGCCAAGGTGCTGGGCCAGC...GGTACTCCCTGAGACCTGCTCAGAGCCAGTGCCCCAACCTCCTGTGACAACAGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp GAGTCAGGCCCCCGCCCTGGGCAGGAAGGACTGCTCCAGCGAGCTTGCAAGGTTCAGTACTGCTTCTGCTaGCTCTCCGCGGCCACTGCT +
Preference number: 4 (lower is better)
Translates to: ESGPRPGQEGLLQRACKVQYCFC*LSAATA
Trigger: AGCAGTGGCCGCGGAGAGGCAGCAGAAGCAGTACTG...AACCTTGCAAGCTCGCTGGAGCAGTCCTTCCTGCCCAGGGCGGGGGCCTGACTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp TTGTCACAGGAGGTTGGGGCACTGGCTCTGAGCAGGTCTCAGGGAGTACCCCCACTGCTTGGGTCCTCCTaGGGCCTCCGCCTGCAGCCT +
Preference number: 4 (lower is better)
Translates to: LSQEVGALALSRSQGVPPLLGSS*GLRLQP
Trigger: AGGCTGCAGGCGGAGGCCCCAGGAGGACCCAAGCAG...TGGGGGTACTCCCTGAGACCTGCTCAGAGCCAGTGCCCCAACCTCCTGTGACAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp GAGTCAGGCCCCCGCCCTGGGCAGGAAGGACTGCTCCAGCGAGCTTGCAAGGTTGAGTCATGTCCTGGATaGGGGCCAGAAGCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: ESGPRPGQEGLLQRACKVESCPG*GPEAAA
Trigger: AGCAGCAGCTTCTGGCCCTCATCCAGGACATGACTC...AACCTTGCAAGCTCGCTGGAGCAGTCCTTCCTGCCCAGGGCGGGGGCCTGACTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp CCCCACACGGCAGAATATTTTCCGGTCCTCCATCAGCCCAGGCCATGCTGTGTGGCTGGCTGGGAGGCATaGGGCTGCTGGAGCGGAAGC +
Preference number: 4 (lower is better)
Translates to: PHTAEYFPVLHQPRPCCVAGWEA*GCWSGS
Trigger: GCTTCCGCTCCAGCAGCCCCATGCCTCCCAGCCAGC...CACACAGCATGGCCTGGGCTGATGGAGGACCGGAAAATATTCTGCCGTGTGGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp ATGGGGGCTTCACCCAAGTGTGGCGCAATGCAGCCTGGGAAGGACTGGGGGAAACCAGGCGCACACAGCTaGGCAGGCTGTCCAGATCAC +
Preference number: 4 (lower is better)
Translates to: MGASPKCGAMQPGKDWGKPGAHS*AGCPDH
Trigger: GTGATCTGGACAGCCTGCTCAGCTGTGTGCGCCTGG...TTTCCCCCAGTCCTTCCCAGGCTGCATTGCGCCACACTTGGGTGAAGCCCCCAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp ATGGGGGCTTCACCCAAGTGTGGCGCAATGCAGCCTGGGAAGGACTGGGGGAAACGCTTGTACAGGGACTaGTGGCTGGGAGGCATGGGG +
Preference number: 4 (lower is better)
Translates to: MGASPKCGAMQPGKDWGKRLYRD*WLGGMG
Trigger: CCCCATGCCTCCCAGCCAGCAGTCCCTGTACAAGCG...TTTCCCCCAGTCCTTCCCAGGCTGCATTGCGCCACACTTGGGTGAAGCCCCCAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp TTGTCACAGGAGGTTGGGGCACTGGCTCTGAGCAGGTCTCAGGGAGTACCCCCAGCCACCTCCAGGAACTaGTCCTCCGAGCTGCCAAGC +
Preference number: 4 (lower is better)
Translates to: LSQEVGALALSRSQGVPPATSRN*SSELPS
Trigger: GCTTGGCAGCTCGGAGGAGCAGTTCCTGGAGGTGGC...TGGGGGTACTCCCTGAGACCTGCTCAGAGCCAGTGCCCCAACCTCCTGTGACAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp ATGGGGGCTTCACCCAAGTGTGGCGCAATGCAGCCTGGGAAGGACTGGGGGAAAGGGACTCTGTGGAGCTaGGGAGGCTGCAGTCACTGT +
Preference number: 4 (lower is better)
Translates to: MGASPKCGAMQPGKDWGKGTLWS*GGCSHC
Trigger: ACAGTGACTGCAGCCTCCTCAGCTCCACAGAGTCCC...TTTCCCCCAGTCCTTCCCAGGCTGCATTGCGCCACACTTGGGTGAAGCCCCCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp ATGGGGGCTTCACCCAAGTGTGGCGCAATGCAGCCTGGGAAGGACTGGGGGAAAAGCCATTCACCCTCCTaGGAAGGCCCACAGCCTGCT +
Preference number: 4 (lower is better)
Translates to: MGASPKCGAMQPGKDWGKSHSPS*EGPQPA
Trigger: AGCAGGCTGTGGGCCTTCTCAGGAGGGTGAATGGCT...TTTCCCCCAGTCCTTCCCAGGCTGCATTGCGCCACACTTGGGTGAAGCCCCCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp TTGTCACAGGAGGTTGGGGCACTGGCTCTGAGCAGGTCTCAGGGAGTACCCCCACCTGAGGCTCCAGGTTaGTGGCCATCTTCAGGGACC +
Preference number: 4 (lower is better)
Translates to: LSQEVGALALSRSQGVPPPEAPG*WPSSGT
Trigger: GGTCCCTGAAGATGGCCAGCAACCTGGAGCCTCAGG...TGGGGGTACTCCCTGAGACCTGCTCAGAGCCAGTGCCCCAACCTCCTGTGACAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp TTGTCACAGGAGGTTGGGGCACTGGCTCTGAGCAGGTCTCAGGGAGTACCCCCACAGTACTGCTTCTGCTaGCTCTCCGCGGCCACTGCT +
Preference number: 4 (lower is better)
Translates to: LSQEVGALALSRSQGVPPQYCFC*LSAATA
Trigger: AGCAGTGGCCGCGGAGAGGCAGCAGAAGCAGTACTG...TGGGGGTACTCCCTGAGACCTGCTCAGAGCCAGTGCCCCAACCTCCTGTGACAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp GGCAGAATATTTTCCGGTCCTCCATCAGCCCAGGCCATGCTGTGTGAAGGTGGCTCCTCCTCGTCCAGCTaGCCCAGCACCTTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: GRIFSGPPSAQAMLCEGGSSSSS*PSTLAW
Trigger: CCAGGCCAAGGTGCTGGGCCAGCTGGACGAGGAGGA...GCCACCTTCACACAGCATGGCCTGGGCTGATGGAGGACCGGAAAATATTCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp TTGTCACAGGAGGTTGGGGCACTGGCTCTGAGCAGGTCTCAGGGAGTACCCCCACGCTCCTTCAGCTGCTaGCATCTCCGGAGCAGAACC +
Preference number: 4 (lower is better)
Translates to: LSQEVGALALSRSQGVPPRSFSC*HLRSRT
Trigger: GGTTCTGCTCCGGAGATGCCAGCAGCTGAAGGAGCG...TGGGGGTACTCCCTGAGACCTGCTCAGAGCCAGTGCCCCAACCTCCTGTGACAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp GGGCCAGAACCCACAAAGCTATTCCTGTTGTCACAGGAGGTTGGGGCACTGGCTCCAGGCGCACACAGCTaGGCAGGCTGTCCAGATCAC +
Preference number: 4 (lower is better)
Translates to: GPEPTKLFLLSQEVGALAPGAHS*AGCPDH
Trigger: GTGATCTGGACAGCCTGCTCAGCTGTGTGCGCCTGG...AGCCAGTGCCCCAACCTCCTGTGACAACAGGAATAGCTTTGTGGGTTCTGGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp ACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCAGCTGAGGCTGGCCCAGCACCTTaGCCTGGCGCAGGTAGGGGG +
Preference number: 4 (lower is better)
Translates to: TAPSFADVCGSTWLLAAEAGPAP*PGAGRG
Trigger: CCCCCTACCTGCGCCAGGCCAAGGTGCTGGGCCAGC...CTCAGCTGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp TGGCTCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCCGTTTCATGCGGCTGTaGTCGACCTCCAGCTGGCGC +
Preference number: 4 (lower is better)
Translates to: WLWDMHQSNLGFGVRHRGRFMRL*STSSWR
Trigger: GCGCCAGCTGGAGGTCGACCACAGCCGCATGAAACG...GCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp CCCCACACGGCAGAATATTTTCCGGTCCTCCATCAGCCCAGGCCATGCTGTGTGCTCTCCCGCAGTGAGTaGATGCGGTCCACCAGCTCT +
Preference number: 4 (lower is better)
Translates to: PHTAEYFPVLHQPRPCCVLSRSE*MRSTSS
Trigger: AGAGCTGGTGGACCGCATCCACTCACTGCGGGAGAG...CACACAGCATGGCCTGGGCTGATGGAGGACCGGAAAATATTCTGCCGTGTGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp GGGCCAGAACCCACAAAGCTATTCCTGTTGTCACAGGAGGTTGGGGCACTGGCTGGAGGCAGAGTTCCCTaGCTCCGGCTTCCTGCTTGG +
Preference number: 4 (lower is better)
Translates to: GPEPTKLFLLSQEVGALAGGRVP*LRLPAW
Trigger: CCAAGCAGGAAGCCGGAGCCAGGGAACTCTGCCTCC...AGCCAGTGCCCCAACCTCCTGTGACAACAGGAATAGCTTTGTGGGTTCTGGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp ACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCAGCTGAGGGCCGGGCAGGCCTGTaGGGGTGCACCAGGGTGTAC +
Preference number: 4 (lower is better)
Translates to: TAPSFADVCGSTWLLAAEGRAGL*GCTRVY
Trigger: GTACACCCTGGTGCACCCCCACAGGCCTGCCCGGCC...CTCAGCTGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp TCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCAGTGTGCAGCCTGCGCAGCTaGGTACGCAGCTCACAGACC +
Preference number: 4 (lower is better)
Translates to: SGICTKATWGLGLGTEAVCSLRS*VRSSQT
Trigger: GGTCTGTGAGCTGCGTACTCAGCTGCGCAGGCTGCA...CACTGCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp GGCAGAATATTTTCCGGTCCTCCATCAGCCCAGGCCATGCTGTGTGAAGGTGGCAGCCATTCACCCTCCTaGGAAGGCCCACAGCCTGCT +
Preference number: 4 (lower is better)
Translates to: GRIFSGPPSAQAMLCEGGSHSPS*EGPQPA
Trigger: AGCAGGCTGTGGGCCTTCTCAGGAGGGTGAATGGCT...GCCACCTTCACACAGCATGGCCTGGGCTGATGGAGGACCGGAAAATATTCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp CCCCACACGGCAGAATATTTTCCGGTCCTCCATCAGCCCAGGCCATGCTGTGTGGGGACTGTGCACCGTTaGGTCATGTCCTGGATGAGG +
Preference number: 4 (lower is better)
Translates to: PHTAEYFPVLHQPRPCCVGTVHR*VMSWMR
Trigger: CCTCATCCAGGACATGACTCAACGGTGCACAGTCCC...CACACAGCATGGCCTGGGCTGATGGAGGACCGGAAAATATTCTGCCGTGTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp AGGAAGTGGGGTTGTTTGCTGACAGCATTGACAGACACACAGAGGTCCCCACAGTGGGCCAGCTCCTCCTaGAGGCTGCTGATGGCCCCA +
Preference number: 4 (lower is better)
Translates to: RKWGCLLTALTDTQRSPQWASSS*RLLMAP
Trigger: TGGGGCCATCAGCAGCCTGCAGGAGGAGCTGGCCCA...CTGTGGGGACCTCTGTGTGTCTGTCAATGCTGTCAGCAAACAACCCCACTTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp TCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCAGTGTGGGAGGCATGGGGCTaGTGGAGCGGAAGCTGTCCA +
Preference number: 4 (lower is better)
Translates to: SGICTKATWGLGLGTEAVWEAWG*WSGSCP
Trigger: TGGACAGCTTCCGCTCCAGCAGCCCCATGCCTCCCA...CACTGCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp AAGGGCCAGAACCCACAAAGCTATTCCTGTTGTCACAGGAGGTTGGGGCACTGGTGGGAGGCATGGGGCTaGTGGAGCGGAAGCTGTCCA +
Preference number: 4 (lower is better)
Translates to: KGQNPQSYSCCHRRLGHWWEAWG*WSGSCP
Trigger: TGGACAGCTTCCGCTCCAGCAGCCCCATGCCTCCCA...CCAGTGCCCCAACCTCCTGTGACAACAGGAATAGCTTTGTGGGTTCTGGCCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp TTTTCCGGTCCTCCATCAGCCCAGGCCATGCTGTGTGAAGGTGGCTTCGTCATTCGCTTGTACAGGGACTaGTGGCTGGGAGGCATGGGG +
Preference number: 4 (lower is better)
Translates to: FSGPPSAQAMLCEGGFVIRLYRD*WLGGMG
Trigger: CCCCATGCCTCCCAGCCAGCAGTCCCTGTACAAGCG...AATGACGAAGCCACCTTCACACAGCATGGCCTGGGCTGATGGAGGACCGGAAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp GGCTCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCATTCACATGGTGGGCATaGCAGCAGCTGCGGCCTTGG +
Preference number: 4 (lower is better)
Translates to: GSGICTKATWGLGLGTEAFTWWA*QQLRPW
Trigger: CCAAGGCCGCAGCTGCTGGCATGCCCACCATGTGAA...TGCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp GGCAGAATATTTTCCGGTCCTCCATCAGCCCAGGCCATGCTGTGTGAAGGTGGCTTCTGTGCCTTCTCCTaGGCCAGCTCCTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: GRIFSGPPSAQAMLCEGGFCAFS*ASSSCR
Trigger: CCTGCAGGAGGAGCTGGCCCAGGAGAAGGCACAGAA...GCCACCTTCACACAGCATGGCCTGGGCTGATGGAGGACCGGAAAATATTCTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp GGCTCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCACGCTCCTTCAGCTGCTaGCATCTCCGGAGCAGAACC +
Preference number: 4 (lower is better)
Translates to: GSGICTKATWGLGLGTEARSFSC*HLRSRT
Trigger: GGTTCTGCTCCGGAGATGCCAGCAGCTGAAGGAGCG...TGCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp TTTTCCGGTCCTCCATCAGCCCAGGCCATGCTGTGTGAAGGTGGCTTCGTCATTGGCTGTGGCAGCGTGTaGCAGCCAGCTCCTTCTCTC +
Preference number: 4 (lower is better)
Translates to: FSGPPSAQAMLCEGGFVIGCGSV*QPAPSL
Trigger: GAGAGAAGGAGCTGGCTGCCACACGCTGCCACAGCC...AATGACGAAGCCACCTTCACACAGCATGGCCTGGGCTGATGGAGGACCGGAAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp GGGCCAGAACCCACAAAGCTATTCCTGTTGTCACAGGAGGTTGGGGCACTGGCTCTCTCCCGCAGTGAGTaGATGCGGTCCACCAGCTCT +
Preference number: 4 (lower is better)
Translates to: GPEPTKLFLLSQEVGALALSRSE*MRSTSS
Trigger: AGAGCTGGTGGACCGCATCCACTCACTGCGGGAGAG...AGCCAGTGCCCCAACCTCCTGTGACAACAGGAATAGCTTTGTGGGTTCTGGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp GTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCCTGCTTGGGTCCTCCTaGGGCCTCCGCCTGCAGCCT +
Preference number: 4 (lower is better)
Translates to: VHYSTFICRCLWQHLAVSLLGSS*GLRLQP
Trigger: AGGCTGCAGGCGGAGGCCCCAGGAGGACCCAAGCAG...GCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp ACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCAGCTGAGGCTGGCTGGGAGGCATaGGGCTGCTGGAGCGGAAGC +
Preference number: 4 (lower is better)
Translates to: TAPSFADVCGSTWLLAAEAGWEA*GCWSGS
Trigger: GCTTCCGCTCCAGCAGCCCCATGCCTCCCAGCCAGC...CTCAGCTGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp ACAGAGGCAGTGAGTCAAAGAGCCACTCAAGTCTGTGCACTACAGCACCTTCATGGCCGGGCAGGCCTGTaGGGGTGCACCAGGGTGTAC +
Preference number: 4 (lower is better)
Translates to: TEAVSQRATQVCALQHLHGRAGL*GCTRVY
Trigger: GTACACCCTGGTGCACCCCCACAGGCCTGCCCGGCC...ATGAAGGTGCTGTAGTGCACAGACTTGAGTGGCTCTTTGACTCACTGCCTCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp TTGTCACAGGAGGTTGGGGCACTGGCTCTGAGCAGGTCTCAGGGAGTACCCCCAACAATCCTGCATCGGTaGCTCTCCAGCATATCCCAG +
Preference number: 4 (lower is better)
Translates to: LSQEVGALALSRSQGVPPTILHR*LSSISQ
Trigger: CTGGGATATGCTGGAGAGTCACCGATGCAGGATTGT...TGGGGGTACTCCCTGAGACCTGCTCAGAGCCAGTGCCCCAACCTCCTGTGACAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp CCCACAAAGCTATTCCTGTTGTCACAGGAGGTTGGGGCACTGGCTCTGAGCAGGCAGACTGCAGCCCAGTaGCCAGGGTGTAGACATCAG +
Preference number: 4 (lower is better)
Translates to: PTKLFLLSQEVGALALSRQTAAQ*PGCRHQ
Trigger: CTGATGTCTACACCCTGGTCACTGGGCTGCAGTCTG...CCTGCTCAGAGCCAGTGCCCCAACCTCCTGTGACAACAGGAATAGCTTTGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp GTTGGCTCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGGAACGCCAGCACCGTaGCCTGGCTTAGGATCTTGC +
Preference number: 4 (lower is better)
Translates to: VGSGICTKATWGLGLGTEGTPAP*PGLGSC
Trigger: GCAAGATCCTAAGCCAGGTCACGGTGCTGGCGTTCC...CTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCCAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp GGGCCAGAACCCACAAAGCTATTCCTGTTGTCACAGGAGGTTGGGGCACTGGCTCTGCTGCTGAGCCTGTaGATAGTTGGGGATGGTGCC +
Preference number: 4 (lower is better)
Translates to: GPEPTKLFLLSQEVGALALLLSL*IVGDGA
Trigger: GGCACCATCCCCAACTATTCACAGGCTCAGCAGCAG...AGCCAGTGCCCCAACCTCCTGTGACAACAGGAATAGCTTTGTGGGTTCTGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp CCCACAAAGCTATTCCTGTTGTCACAGGAGGTTGGGGCACTGGCTCTGAGCAGGTGTACGGTGCCAGGGTaGAGCAGCTCTCTGACCAGA +
Preference number: 4 (lower is better)
Translates to: PTKLFLLSQEVGALALSRCTVPG*SSSLTR
Trigger: TCTGGTCAGAGAGCTGCTTCACCCTGGCACCGTACA...CCTGCTCAGAGCCAGTGCCCCAACCTCCTGTGACAACAGGAATAGCTTTGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp GTTGGCTCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGCGGTCCACCAGCTCTTaGTTGCTCTCCCTGGCCTCA +
Preference number: 4 (lower is better)
Translates to: VGSGICTKATWGLGLGTERSTSS*LLSLAS
Trigger: TGAGGCCAGGGAGAGCAAGCAAGAGCTGGTGGACCG...CTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCCAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp GGCAGAATATTTTCCGGTCCTCCATCAGCCCAGGCCATGCTGTGTGAAGGTGGCCGCAGCTCACAGACCTaGTCCGTCAGCTCGAACACT +
Preference number: 4 (lower is better)
Translates to: GRIFSGPPSAQAMLCEGGRSSQT*SVSSNT
Trigger: AGTGTTCGAGCTGACGGAGCAGGTCTGTGAGCTGCG...GCCACCTTCACACAGCATGGCCTGGGCTGATGGAGGACCGGAAAATATTCTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp CCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCAGCTGAGTCAGCTCCGTCCCCTCCCCTCTaGATGGCCAGGTTGACACGG +
Preference number: 4 (lower is better)
Translates to: PSFADVCGSTWLLAAESAPSPPL*MARLTR
Trigger: CCGTGTCAACCTGGCCATGCAGAGGGGAGGGGACGG...AGCTGACTCAGCTGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp AGGAAGTGGGGTTGTTTGCTGACAGCATTGACAGACACACAGAGGTCCCCACAGGGAGGCAGAGTTCCCTaGCTCCGGCTTCCTGCTTGG +
Preference number: 4 (lower is better)
Translates to: RKWGCLLTALTDTQRSPQGGRVP*LRLPAW
Trigger: CCAAGCAGGAAGCCGGAGCCAGGGAACTCTGCCTCC...CTGTGGGGACCTCTGTGTGTCTGTCAATGCTGTCAGCAAACAACCCCACTTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp AGGAAGTGGGGTTGTTTGCTGACAGCATTGACAGACACACAGAGGTCCCCACAGAGCAACGCGTCCCCTTaGAACGCCAGCACCGTGACC +
Preference number: 4 (lower is better)
Translates to: RKWGCLLTALTDTQRSPQSNASP*NASTVT
Trigger: GGTCACGGTGCTGGCGTTCCAAGGGGACGCGTTGCT...CTGTGGGGACCTCTGTGTGTCTGTCAATGCTGTCAGCAAACAACCCCACTTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp CCACTCAAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTGCAGCCTGCGCAGCTaGGTACGCAGCTCACAGACC +
Preference number: 4 (lower is better)
Translates to: PLKSVHYSTFICRCLWQHCSLRS*VRSSQT
Trigger: GGTCTGTGAGCTGCGTACTCAGCTGCGCAGGCTGCA...GTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp TTTTCCGGTCCTCCATCAGCCCAGGCCATGCTGTGTGAAGGTGGCTTCGTCATTGAGTCATGTCCTGGATaGGGGCCAGAAGCTGCTGCT +
Preference number: 4 (lower is better)
Translates to: FSGPPSAQAMLCEGGFVIESCPG*GPEAAA
Trigger: AGCAGCAGCTTCTGGCCCTCATCCAGGACATGACTC...AATGACGAAGCCACCTTCACACAGCATGGCCTGGGCTGATGGAGGACCGGAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp AAGGGCCAGAACCCACAAAGCTATTCCTGTTGTCACAGGAGGTTGGGGCACTGGGGGACTGTGCACCGTTaGGTCATGTCCTGGATGAGG +
Preference number: 4 (lower is better)
Translates to: KGQNPQSYSCCHRRLGHWGTVHR*VMSWMR
Trigger: CCTCATCCAGGACATGACTCAACGGTGCACAGTCCC...CCAGTGCCCCAACCTCCTGTGACAACAGGAATAGCTTTGTGGGTTCTGGCCCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp AAGGGCCAGAACCCACAAAGCTATTCCTGTTGTCACAGGAGGTTGGGGCACTGGTTCTCCTCCCAGTACTaGTTCTGCTGCCTCTCCGCG +
Preference number: 4 (lower is better)
Translates to: KGQNPQSYSCCHRRLGHWFSSQY*FCCLSA
Trigger: CGCGGAGAGGCAGCAGAAGCAGTACTGGGAGGAGAA...CCAGTGCCCCAACCTCCTGTGACAACAGGAATAGCTTTGTGGGTTCTGGCCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp TTTTCCGGTCCTCCATCAGCCCAGGCCATGCTGTGTGAAGGTGGCTTCGTCATTCGGAAGCTGTCCATCTaGTCCCGGCTGGATGTGGAA +
Preference number: 4 (lower is better)
Translates to: FSGPPSAQAMLCEGGFVIRKLSI*SRLDVE
Trigger: TTCCACATCCAGCCGGGAGCAGATGGACAGCTTCCG...AATGACGAAGCCACCTTCACACAGCATGGCCTGGGCTGATGGAGGACCGGAAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp CCACTCAAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACGGCCATCTCATCTGCTaGAGAGCCGGGGGTGACACG +
Preference number: 4 (lower is better)
Translates to: PLKSVHYSTFICRCLWQHGHLIC*RAGGDT
Trigger: CGTGTCACCCCCGGCTCTGCAGCAGATGAGATGGCC...GTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGAGTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp TGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCACCGTCCCCTCCCCTCTaGATGGCCAGGTTGACACGG +
Preference number: 4 (lower is better)
Translates to: CTTAPSFADVCGSTWLLAPSPPL*MARLTR
Trigger: CCGTGTCAACCTGGCCATGCAGAGGGGAGGGGACGG...TGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp AAGGAAGTGGGGTTGTTTGCTGACAGCATTGACAGACACACAGAGGTCCCCACAGCCACCTCCAGGAACTaGTCCTCCGAGCTGCCAAGC +
Preference number: 4 (lower is better)
Translates to: KEVGLFADSIDRHTEVPTATSRN*SSELPS
Trigger: GCTTGGCAGCTCGGAGGAGCAGTTCCTGGAGGTGGC...TGTGGGGACCTCTGTGTGTCTGTCAATGCTGTCAGCAAACAACCCCACTTCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp ACAGAGGCAGTGAGTCAAAGAGCCACTCAAGTCTGTGCACTACAGCACCTTCATTCCTCCTCGTCCAGCTaGCCCAGCACCTTGGCCTGG +
Preference number: 4 (lower is better)
Translates to: TEAVSQRATQVCALQHLHSSSSS*PSTLAW
Trigger: CCAGGCCAAGGTGCTGGGCCAGCTGGACGAGGAGGA...ATGAAGGTGCTGTAGTGCACAGACTTGAGTGGCTCTTTGACTCACTGCCTCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp ACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCAGCTGAGAGCAACGCGTCCCCTTaGAACGCCAGCACCGTGACC +
Preference number: 4 (lower is better)
Translates to: TAPSFADVCGSTWLLAAESNASP*NASTVT
Trigger: GGTCACGGTGCTGGCGTTCCAAGGGGACGCGTTGCT...CTCAGCTGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp GGCTCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCAGAGCCTGTGAATAGTTaGGGATGGTGCCAGGCTCCA +
Preference number: 4 (lower is better)
Translates to: GSGICTKATWGLGLGTEAEPVNS*GWCQAP
Trigger: TGGAGCCTGGCACCATCCCCAACTATTCACAGGCTC...TGCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp TGGGGTTGTTTGCTGACAGCATTGACAGACACACAGAGGTCCCCACAGTCCCAACAGACTGCAGCCCAGTaGCCAGGGTGTAGACATCAG +
Preference number: 4 (lower is better)
Translates to: WGCLLTALTDTQRSPQSQQTAAQ*PGCRHQ
Trigger: CTGATGTCTACACCCTGGTCACTGGGCTGCAGTCTG...TTGGGACTGTGGGGACCTCTGTGTGTCTGTCAATGCTGTCAGCAAACAACCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp ACTCAAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTCGCAGACCTTCTGCGTaGGCCTCAGCCAAGCCCAGG +
Preference number: 4 (lower is better)
Translates to: TQVCALQHLHLQMSVAALRRPSA*ASAKPR
Trigger: CCTGGGCTTGGCTGAGGCTCACGCAGAAGGTCTGCG...AAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp ACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCAGCTGAGCCACAGCATGCCGGGTaGTCCAGTGGTGGTCACCTA +
Preference number: 4 (lower is better)
Translates to: TAPSFADVCGSTWLLAAEPQHAG*SSGGHL
Trigger: TAGGTGACCACCACTGGATCACCCGGCATGCTGTGG...CTCAGCTGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp TGGCTCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCAAGTCAATGTCAGACTaGAGCCCAGTGACCAGGGTG +
Preference number: 4 (lower is better)
Translates to: WLWDMHQSNLGFGVRHRGKSMSD*SPVTRV
Trigger: CACCCTGGTCACTGGGCTGCAGTCTGACATTGACTT...GCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp ACTCAAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTTGGGCCAGCTCCTCCTaGAGGCTGCTGATGGCCCCA +
Preference number: 4 (lower is better)
Translates to: TQVCALQHLHLQMSVAALWASSS*RLLMAP
Trigger: TGGGGCCATCAGCAGCCTGCAGGAGGAGCTGGCCCA...AAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp TCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCAGTGTTCCAGGAAGTCCTCTaGCACCCGCTTGTACAGGGA +
Preference number: 4 (lower is better)
Translates to: SGICTKATWGLGLGTEAVFQEVL*HPLVQG
Trigger: TCCCTGTACAAGCGGGTGGCAGAGGACTTCCTGGAA...CACTGCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp ACAGAGGCAGTGAGTCAAAGAGCCACTCAAGTCTGTGCACTACAGCACCTTCATGGCCATCTCATCTGCTaGAGAGCCGGGGGTGACACG +
Preference number: 4 (lower is better)
Translates to: TEAVSQRATQVCALQHLHGHLIC*RAGGDT
Trigger: CGTGTCACCCCCGGCTCTGCAGCAGATGAGATGGCC...ATGAAGGTGCTGTAGTGCACAGACTTGAGTGGCTCTTTGACTCACTGCCTCTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp ACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCAGCTGAGGGGCATGCCAGCAGCTaGGGCCTTGGAACATGGTGT +
Preference number: 4 (lower is better)
Translates to: TAPSFADVCGSTWLLAAEGHASS*GLGTWC
Trigger: ACACCATGTTCCAAGGCCGCAGCTGCTGGCATGCCC...CTCAGCTGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp AAGGAAGTGGGGTTGTTTGCTGACAGCATTGACAGACACACAGAGGTCCCCACATTCACATGGTGGGCATaGCAGCAGCTGCGGCCTTGG +
Preference number: 4 (lower is better)
Translates to: KEVGLFADSIDRHTEVPTFTWWA*QQLRPW
Trigger: CCAAGGCCGCAGCTGCTGGCATGCCCACCATGTGAA...TGTGGGGACCTCTGTGTGTCTGTCAATGCTGTCAGCAAACAACCCCACTTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp GTTGGCTCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGAGGACCTCGTGGAAGTaGGTGCTGACCTCACGTTTC +
Preference number: 4 (lower is better)
Translates to: VGSGICTKATWGLGLGTERTSWK*VLTSRF
Trigger: GAAACGTGAGGTCAGCACCCACTTCCACGAGGTCCT...CTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp GTTGGCTCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGAGCCTGTGAATAGTTaGGGATGGTGCCAGGCTCCA +
Preference number: 4 (lower is better)
Translates to: VGSGICTKATWGLGLGTEEPVNS*GWCQAP
Trigger: TGGAGCCTGGCACCATCCCCAACTATTCACAGGCTC...CTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR CAA 72 bp CCCCCGCCCTGGGCAGGAAGGACTGCTCCAGCGAGCTaGCAAGGTTCCTTTGACATCAGAAACATAAAAGGA +
Preference number: 4 (lower is better)
Translates to: PPPWAGRTAPAS*QGSFDIRNIKG
Trigger: TCCTTTTATGTTTCTGATGTCAAAGGAACCTTGCAAGCTCGCTGGAGCAGTCCTTCCTGCCCAGGGCGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR CAA 72 bp GTTGGCTCTGGGATATGCACCAAAGCAACCTGGGGTTaGGGGTTAGGCACAGAGGCAGTGAGTCAAAGAGCC +
Preference number: 4 (lower is better)
Translates to: VGSGICTKATWG*GLGTEAVSQRA
Trigger: GGCTCTTTGACTCACTGCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCCAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp TGGCTCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCGCTTTGGTCAAAGGATaGAGTCAGAGGACTGACAGC +
Preference number: 4 (lower is better)
Translates to: WLWDMHQSNLGFGVRHRGALVKG*SQRTDS
Trigger: GCTGTCAGTCCTCTGACTTCATCCTTTGACCAAAGC...GCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp CCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCAGCTGAGTCAGCTTGTACGGTGCCAGGGTaGAGCAGCTCTCTGACCAGA +
Preference number: 4 (lower is better)
Translates to: PSFADVCGSTWLLAAESACTVPG*SSSLTR
Trigger: TCTGGTCAGAGAGCTGCTTCACCCTGGCACCGTACA...AGCTGACTCAGCTGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp ACAGAGGCAGTGAGTCAAAGAGCCACTCAAGTCTGTGCACTACAGCACCTTCATCCACAGCATGCCGGGTaGTCCAGTGGTGGTCACCTA +
Preference number: 4 (lower is better)
Translates to: TEAVSQRATQVCALQHLHPQHAG*SSGGHL
Trigger: TAGGTGACCACCACTGGATCACCCGGCATGCTGTGG...ATGAAGGTGCTGTAGTGCACAGACTTGAGTGGCTCTTTGACTCACTGCCTCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp TGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCACCCGCAGTGAGTGGATaGGGTCCACCAGCTCTTGCT +
Preference number: 4 (lower is better)
Translates to: CTTAPSFADVCGSTWLLAPAVSG*GPPALA
Trigger: AGCAAGAGCTGGTGGACCGCATCCACTCACTGCGGG...TGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp GTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCTTCTCCTCCCAGTACTaGTTCTGCTGCCTCTCCGCG +
Preference number: 4 (lower is better)
Translates to: VHYSTFICRCLWQHLAVSFSSQY*FCCLSA
Trigger: CGCGGAGAGGCAGCAGAAGCAGTACTGGGAGGAGAA...GCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp TGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCACCTGGCTTAGGATCTTaGGGGCTGGCCTCCTCCTCA +
Preference number: 4 (lower is better)
Translates to: CTTAPSFADVCGSTWLLAPGLGS*GLASSS
Trigger: TGAGGAGGAGGCCAGCCCGCAAGATCCTAAGCCAGG...TGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp TCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCAGTGGACCACCTTCCTCCTTaGCAGAATCCCACTGGCTTT +
Preference number: 4 (lower is better)
Translates to: SGICTKATWGLGLGTEAVDHLPP*QNPTGF
Trigger: AAAGCCAGTGGGATTCTGGCAAGGAGGAAGGTGGTC...CACTGCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp AGGAAGTGGGGTTGTTTGCTGACAGCATTGACAGACACACAGAGGTCCCCACAGAGGACCTCGTGGAAGTaGGTGCTGACCTCACGTTTC +
Preference number: 4 (lower is better)
Translates to: RKWGCLLTALTDTQRSPQRTSWK*VLTSRF
Trigger: GAAACGTGAGGTCAGCACCCACTTCCACGAGGTCCT...CTGTGGGGACCTCTGTGTGTCTGTCAATGCTGTCAGCAAACAACCCCACTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp AAGGGCCAGAACCCACAAAGCTATTCCTGTTGTCACAGGAGGTTGGGGCACTGGAGTTTCAGGACCTCGTaGAAGTGGGTGCTGACCTCA +
Preference number: 4 (lower is better)
Translates to: KGQNPQSYSCCHRRLGHWSFRTS*KWVLTS
Trigger: TGAGGTCAGCACCCACTTCCACGAGGTCCTGAAACT...CCAGTGCCCCAACCTCCTGTGACAACAGGAATAGCTTTGTGGGTTCTGGCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp TGGCTCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCTGTGTCTTCCGGAACTaGAGTAGGGTCTGTTCCTTC +
Preference number: 4 (lower is better)
Translates to: WLWDMHQSNLGFGVRHRGCVFRN*SRVCSF
Trigger: GAAGGAACAGACCCTACTCCAGTTCCGGAAGACACA...GCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp ACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCAGCTGAGGCTCCCGGCTGGATGTaGAATTCAGGTCCCACCACA +
Preference number: 4 (lower is better)
Translates to: TAPSFADVCGSTWLLAAEAPGWM*NSGPTT
Trigger: TGTGGTGGGACCTGAATTCCACATCCAGCCGGGAGC...CTCAGCTGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp AAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGAGGCATGGGGCTGCTaGAGCGGAAGCTGTCCATCT +
Preference number: 4 (lower is better)
Translates to: KSVHYSTFICRCLWQHLAEAWGC*SGSCPS
Trigger: AGATGGACAGCTTCCGCTCCAGCAGCCCCATGCCTC...AGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp ACAGAGGCAGTGAGTCAAAGAGCCACTCAAGTCTGTGCACTACAGCACCTTCATTTCTCCACCAGGCGCTaGGAAATCTCCATCTGGGCC +
Preference number: 4 (lower is better)
Translates to: TEAVSQRATQVCALQHLHFSTRR*EISIWA
Trigger: GGCCCAGATGGAGATTTCTCAGCGCCTGGTGGAGAA...ATGAAGGTGCTGTAGTGCACAGACTTGAGTGGCTCTTTGACTCACTGCCTCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp AGGAAGTGGGGTTGTTTGCTGACAGCATTGACAGACACACAGAGGTCCCCACAGTATAGTCCACCATCATaGTCTGGGTACCAGGGCGCA +
Preference number: 4 (lower is better)
Translates to: RKWGCLLTALTDTQRSPQYSPPS*SGYQGA
Trigger: TGCGCCCTGGTACCCAGATCATGATGGTGGACTATA...CTGTGGGGACCTCTGTGTGTCTGTCAATGCTGTCAGCAAACAACCCCACTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp AAGGAAGTGGGGTTGTTTGCTGACAGCATTGACAGACACACAGAGGTCCCCACAATGATGTCCCCTCTCTaGCTCCAGGTGGCATACTCC +
Preference number: 4 (lower is better)
Translates to: KEVGLFADSIDRHTEVPTMMSPL*LQVAYS
Trigger: GGAGTATGCCACCTGGAGTCAGAGAGGGGACATCAT...TGTGGGGACCTCTGTGTGTCTGTCAATGCTGTCAGCAAACAACCCCACTTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp TCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCAGTGGATGCAGGCCCTTCCTaGGTTTCTTTGCTGTCTTCT +
Preference number: 4 (lower is better)
Translates to: SGICTKATWGLGLGTEAVDAGPS*VSLLSS
Trigger: AGAAGACAGCAAAGAAACTCAGGAAGGGCCTGCATC...CACTGCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp AAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTCCACCAGCTCTTGCTTaGTCTCCCTGGCCTCATCCA +
Preference number: 4 (lower is better)
Translates to: KSVHYSTFICRCLWQHLAPPALA*SPWPHP
Trigger: TGGATGAGGCCAGGGAGAGCAAGCAAGAGCTGGTGG...AGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp ACTCAAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGGCATGCCAGCAGCTaGGGCCTTGGAACATGGTGT +
Preference number: 4 (lower is better)
Translates to: TQVCALQHLHLQMSVAALGHASS*GLGTWC
Trigger: ACACCATGTTCCAAGGCCGCAGCTGCTGGCATGCCC...AAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp TCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCAGTGTTTCCAGAAAGGCAATaGCTCCATTCTTCCCTCGGG +
Preference number: 4 (lower is better)
Translates to: SGICTKATWGLGLGTEAVFPERQ*LHSSLG
Trigger: CCCGAGGGAAGAATGGAGCCATTGCCTTTCTGGAAA...CACTGCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp AGGACTGCTCCAGCGAGCTTGCAAGGTTCCTTTGACATCAGAAACATAAAAGGACGTTTCATGCGGCTGTaGTCGACCTCCAGCTGGCGC +
Preference number: 4 (lower is better)
Translates to: RTAPASLQGSFDIRNIKGRFMRL*STSSWR
Trigger: GCGCCAGCTGGAGGTCGACCACAGCCGCATGAAACG...TCCTTTTATGTTTCTGATGTCAAAGGAACCTTGCAAGCTCGCTGGAGCAGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp ACAGAGGCAGTGAGTCAAAGAGCCACTCAAGTCTGTGCACTACAGCACCTTCATGCTCCCGGCTGGATGTaGAATTCAGGTCCCACCACA +
Preference number: 4 (lower is better)
Translates to: TEAVSQRATQVCALQHLHAPGWM*NSGPTT
Trigger: TGTGGTGGGACCTGAATTCCACATCCAGCCGGGAGC...ATGAAGGTGCTGTAGTGCACAGACTTGAGTGGCTCTTTGACTCACTGCCTCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp GTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCCAGCAGCTGCGGCCTTaGAACATGGTGTCAGTGACA +
Preference number: 4 (lower is better)
Translates to: VHYSTFICRCLWQHLAVSQQLRP*NMVSVT
Trigger: TGTCACTGACACCATGTTCCAAGGCCGCAGCTGCTG...GCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp AAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTTTTAGTTCTTCTCCCTaGGGCTCCAGGTTGCTGGCC +
Preference number: 4 (lower is better)
Translates to: KSVHYSTFICRCLWQHLAFSSSP*GSRLLA
Trigger: GGCCAGCAACCTGGAGCCTCAGGGAGAAGAACTAAA...AGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp AGGAAGTGGGGTTGTTTGCTGACAGCATTGACAGACACACAGAGGTCCCCACAGGGAACATGGTGTCAGTaGCATGCAGGATGTCATTGC +
Preference number: 4 (lower is better)
Translates to: RKWGCLLTALTDTQRSPQGTWCQ*HAGCHC
Trigger: GCAATGACATCCTGCATGTCACTGACACCATGTTCC...CTGTGGGGACCTCTGTGTGTCTGTCAATGCTGTCAGCAAACAACCCCACTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp ACAGAGGCAGTGAGTCAAAGAGCCACTCAAGTCTGTGCACTACAGCACCTTCATATGATGTCCCCTCTCTaGCTCCAGGTGGCATACTCC +
Preference number: 4 (lower is better)
Translates to: TEAVSQRATQVCALQHLHMMSPL*LQVAYS
Trigger: GGAGTATGCCACCTGGAGTCAGAGAGGGGACATCAT...ATGAAGGTGCTGTAGTGCACAGACTTGAGTGGCTCTTTGACTCACTGCCTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp AACCTGGGGTTTGGGGTTAGGCACAGAGGCAGTGAGTCAAAGAGCCACTCAAGTGATGCAGGCCCTTCCTaGGTTTCTTTGCTGTCTTCT +
Preference number: 4 (lower is better)
Translates to: NLGFGVRHRGSESKSHSSDAGPS*VSLLSS
Trigger: AGAAGACAGCAAAGAAACTCAGGAAGGGCCTGCATC...ACTTGAGTGGCTCTTTGACTCACTGCCTCTGTGCCTAACCCCAAACCCCAGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp AGTCAAAGAGCCACTCAAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTCCCGCAGTGAGTGGATaGGGTCCACCAGCTCTTGCT +
Preference number: 4 (lower is better)
Translates to: SQRATQVCALQHLHLQMSPAVSG*GPPALA
Trigger: AGCAAGAGCTGGTGGACCGCATCCACTCACTGCGGG...AGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGAGTGGCTCTTTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp AGGACTGCTCCAGCGAGCTTGCAAGGTTCCTTTGACATCAGAAACATAAAAGGATGGTCACGTTCCTTCTaGAGCTCAGCCACCTGGCCC +
Preference number: 4 (lower is better)
Translates to: RTAPASLQGSFDIRNIKGWSRSF*SSATWP
Trigger: GGGCCAGGTGGCTGAGCTGCAGAAGGAACGTGACCA...TCCTTTTATGTTTCTGATGTCAAAGGAACCTTGCAAGCTCGCTGGAGCAGTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp AGTCAAAGAGCCACTCAAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTCCTGGCTTAGGATCTTaGGGGCTGGCCTCCTCCTCA +
Preference number: 4 (lower is better)
Translates to: SQRATQVCALQHLHLQMSPGLGS*GLASSS
Trigger: TGAGGAGGAGGCCAGCCCGCAAGATCCTAAGCCAGG...AGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGAGTGGCTCTTTGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp CCACTCAAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACCTTCTTCTGCTCATCTaGAATGGCCAGGCGCACACA +
Preference number: 4 (lower is better)
Translates to: PLKSVHYSTFICRCLWQHLLLLI*NGQAHT
Trigger: TGTGTGCGCCTGGCCATTGCAGATGAGCAGAAGAAG...GTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGAGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp AAGGAAGTGGGGTTGTTTGCTGACAGCATTGACAGACACACAGAGGTCCCCACACACACCACCTTCTTCTaGTCATCTGCAATGGCCAGG +
Preference number: 4 (lower is better)
Translates to: KEVGLFADSIDRHTEVPTHTTFF*SSAMAR
Trigger: CCTGGCCATTGCAGATGAGCAGAAGAAGGTGGTGTG...TGTGGGGACCTCTGTGTGTCTGTCAATGCTGTCAGCAAACAACCCCACTTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp CCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCAGCTGAGTCAGCTCACACCACCTTCTTCTaGTCATCTGCAATGGCCAGG +
Preference number: 4 (lower is better)
Translates to: PSFADVCGSTWLLAAESAHTTFF*SSAMAR
Trigger: CCTGGCCATTGCAGATGAGCAGAAGAAGGTGGTGTG...AGCTGACTCAGCTGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp GGGGAAATGTCAGTTTTGAGAGAGAGTTCTTTGCTCATGAAGGGTCAGTTGGCTGAGGCATGGGGCTGCTaGAGCGGAAGCTGTCCATCT +
Preference number: 4 (lower is better)
Translates to: GEMSVLRESSLLMKGQLAEAWGC*SGSCPS
Trigger: AGATGGACAGCTTCCGCTCCAGCAGCCCCATGCCTC...AGCCAACTGACCCTTCATGAGCAAAGAACTCTCTCTCAAAACTGACATTTCCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp TGGCTCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCTTGTATTCTCCAGAGTaGCCCTTAATGATGGCTTGG +
Preference number: 4 (lower is better)
Translates to: WLWDMHQSNLGFGVRHRGLYSPE*PLMMAW
Trigger: CCAAGCCATCATTAAGGGCCACTCTGGAGAATACAA...GCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp ACAGAGGCAGTGAGTCAAAGAGCCACTCAAGTCTGTGCACTACAGCACCTTCATCAGCAGCTGCGGCCTTaGAACATGGTGTCAGTGACA +
Preference number: 4 (lower is better)
Translates to: TEAVSQRATQVCALQHLHQQLRP*NMVSVT
Trigger: TGTCACTGACACCATGTTCCAAGGCCGCAGCTGCTG...ATGAAGGTGCTGTAGTGCACAGACTTGAGTGGCTCTTTGACTCACTGCCTCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp AACCTGGGGTTTGGGGTTAGGCACAGAGGCAGTGAGTCAAAGAGCCACTCAAGTGTGGCATACTCCTCCTaGCTCAAGTACTCTGCTGAA +
Preference number: 4 (lower is better)
Translates to: NLGFGVRHRGSESKSHSSVAYSS*LKYSAE
Trigger: TTCAGCAGAGTACTTGAGCCAGGAGGAGTATGCCAC...ACTTGAGTGGCTCTTTGACTCACTGCCTCTGTGCCTAACCCCAAACCCCAGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp AGGACTGCTCCAGCGAGCTTGCAAGGTTCCTTTGACATCAGAAACATAAAAGGACCACCAGCTCTTGCTTaGTCTCCCTGGCCTCATCCA +
Preference number: 4 (lower is better)
Translates to: RTAPASLQGSFDIRNIKGPPALA*SPWPHP
Trigger: TGGATGAGGCCAGGGAGAGCAAGCAAGAGCTGGTGG...TCCTTTTATGTTTCTGATGTCAAAGGAACCTTGCAAGCTCGCTGGAGCAGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp GGGGAAATGTCAGTTTTGAGAGAGAGTTCTTTGCTCATGAAGGGTCAGTTGGCTCGCAGCTCACAGACCTaGTCCGTCAGCTCGAACACT +
Preference number: 4 (lower is better)
Translates to: GEMSVLRESSLLMKGQLARSSQT*SVSSNT
Trigger: AGTGTTCGAGCTGACGGAGCAGGTCTGTGAGCTGCG...AGCCAACTGACCCTTCATGAGCAAAGAACTCTCTCTCAAAACTGACATTTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp ACTCAAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTTTCCAGGAAGTCCTCTaGCACCCGCTTGTACAGGGA +
Preference number: 4 (lower is better)
Translates to: TQVCALQHLHLQMSVAALFQEVL*HPLVQG
Trigger: TCCCTGTACAAGCGGGTGGCAGAGGACTTCCTGGAA...AAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp TGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCAGACCACCTTCCTCCTTaGCAGAATCCCACTGGCTTT +
Preference number: 4 (lower is better)
Translates to: CTTAPSFADVCGSTWLLADHLPP*QNPTGF
Trigger: AAAGCCAGTGGGATTCTGGCAAGGAGGAAGGTGGTC...TGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp CCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCAGCTGAGTCAGCTTGTGTCTTCCGGAACTaGAGTAGGGTCTGTTCCTTC +
Preference number: 4 (lower is better)
Translates to: PSFADVCGSTWLLAAESACVFRN*SRVCSF
Trigger: GAAGGAACAGACCCTACTCCAGTTCCGGAAGACACA...AGCTGACTCAGCTGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp GGGCCAGAACCCACAAAGCTATTCCTGTTGTCACAGGAGGTTGGGGCACTGGCTCCTGGCCCTGAAGCATaGTCATCTTTTCTTTGTATA +
Preference number: 4 (lower is better)
Translates to: GPEPTKLFLLSQEVGALAPGPEA*SSFLCI
Trigger: TATACAAAGAAAAGATGACCATGCTTCAGGGCCAGG...AGCCAGTGCCCCAACCTCCTGTGACAACAGGAATAGCTTTGTGGGTTCTGGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp CCCACAAAGCTATTCCTGTTGTCACAGGAGGTTGGGGCACTGGCTCTGAGCAGGCCTGGCCCTGAAGCATaGTCATCTTTTCTTTGTATA +
Preference number: 4 (lower is better)
Translates to: PTKLFLLSQEVGALALSRPGPEA*SSFLCI
Trigger: TATACAAAGAAAAGATGACCATGCTTCAGGGCCAGG...CCTGCTCAGAGCCAGTGCCCCAACCTCCTGTGACAACAGGAATAGCTTTGTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp GGGGAAATGTCAGTTTTGAGAGAGAGTTCTTTGCTCATGAAGGGTCAGTTGGCTTTTAGTTCTTCTCCCTaGGGCTCCAGGTTGCTGGCC +
Preference number: 4 (lower is better)
Translates to: GEMSVLRESSLLMKGQLAFSSSP*GSRLLA
Trigger: GGCCAGCAACCTGGAGCCTCAGGGAGAAGAACTAAA...AGCCAACTGACCCTTCATGAGCAAAGAACTCTCTCTCAAAACTGACATTTCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp AGAAACATAAAAGGAAGGGCCAGAACCCACAAAGCTATTCCTGTTGTCACAGGATTCTCCACCAGGCGCTaGGAAATCTCCATCTGGGCC +
Preference number: 4 (lower is better)
Translates to: RNIKGRARTHKAIPVVTGFSTRR*EISIWA
Trigger: GGCCCAGATGGAGATTTCTCAGCGCCTGGTGGAGAA...TCCTGTGACAACAGGAATAGCTTTGTGGGTTCTGGCCCTTCCTTTTATGTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp TTGCAAGGTTCCTTTGACATCAGAAACATAAAAGGAAGGGCCAGAACCCACAAAGGGACTCTGTGGAGCTaGGGAGGCTGCAGTCACTGT +
Preference number: 4 (lower is better)
Translates to: LQGSFDIRNIKGRARTHKGTLWS*GGCSHC
Trigger: ACAGTGACTGCAGCCTCCTCAGCTCCACAGAGTCCC...TTTGTGGGTTCTGGCCCTTCCTTTTATGTTTCTGATGTCAAAGGAACCTTGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp TGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCATCTGCATGGCCAGGTTaGCACGGATGTAGAAGGAAT +
Preference number: 4 (lower is better)
Translates to: CTTAPSFADVCGSTWLLASAWPG*HGCRRN
Trigger: ATTCCTTCTACATCCGTGTCAACCTGGCCATGCAGA...TGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp AGAAACATAAAAGGAAGGGCCAGAACCCACAAAGCTATTCCTGTTGTCACAGGACTGCTGCTGAGCCTGTaGATAGTTGGGGATGGTGCC +
Preference number: 4 (lower is better)
Translates to: RNIKGRARTHKAIPVVTGLLLSL*IVGDGA
Trigger: GGCACCATCCCCAACTATTCACAGGCTCAGCAGCAG...TCCTGTGACAACAGGAATAGCTTTGTGGGTTCTGGCCCTTCCTTTTATGTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp GGGGAAATGTCAGTTTTGAGAGAGAGTTCTTTGCTCATGAAGGGTCAGTTGGCTACAATCCTGCATCGGTaGCTCTCCAGCATATCCCAG +
Preference number: 4 (lower is better)
Translates to: GEMSVLRESSLLMKGQLATILHR*LSSISQ
Trigger: CTGGGATATGCTGGAGAGTCACCGATGCAGGATTGT...AGCCAACTGACCCTTCATGAGCAAAGAACTCTCTCTCAAAACTGACATTTCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp AGGACTGCTCCAGCGAGCTTGCAAGGTTCCTTTGACATCAGAAACATAAAAGGATATAGTCCACCATCATaGTCTGGGTACCAGGGCGCA +
Preference number: 4 (lower is better)
Translates to: RTAPASLQGSFDIRNIKGYSPPS*SGYQGA
Trigger: TGCGCCCTGGTACCCAGATCATGATGGTGGACTATA...TCCTTTTATGTTTCTGATGTCAAAGGAACCTTGCAAGCTCGCTGGAGCAGTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp ACTCAAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGAACATGGTGTCAGTaGCATGCAGGATGTCATTGC +
Preference number: 4 (lower is better)
Translates to: TQVCALQHLHLQMSVAALGTWCQ*HAGCHC
Trigger: GCAATGACATCCTGCATGTCACTGACACCATGTTCC...AAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp ACTCAAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGCTTTGGTCAAAGGATaGAGTCAGAGGACTGACAGC +
Preference number: 4 (lower is better)
Translates to: TQVCALQHLHLQMSVAALALVKG*SQRTDS
Trigger: GCTGTCAGTCCTCTGACTTCATCCTTTGACCAAAGC...AAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp AGTCAAAGAGCCACTCAAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTCCCTTGCTGTGTATaGCTGGTCACGTTCCTTCTG +
Preference number: 4 (lower is better)
Translates to: SQRATQVCALQHLHLQMSVPCCV*LVTFLL
Trigger: CAGAAGGAACGTGACCAGGCATACACAGCAAGGGAC...AGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGAGTGGCTCTTTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp GGGGAAATGTCAGTTTTGAGAGAGAGTTCTTTGCTCATGAAGGGTCAGTTGGCTCTTCTTCTGCTCATCTaGAATGGCCAGGCGCACACA +
Preference number: 4 (lower is better)
Translates to: GEMSVLRESSLLMKGQLALLLLI*NGQAHT
Trigger: TGTGTGCGCCTGGCCATTGCAGATGAGCAGAAGAAG...AGCCAACTGACCCTTCATGAGCAAAGAACTCTCTCTCAAAACTGACATTTCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp AGTCAAAGAGCCACTCAAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTAGTTTCAGGACCTCGTaGAAGTGGGTGCTGACCTCA +
Preference number: 4 (lower is better)
Translates to: SQRATQVCALQHLHLQMSSFRTS*KWVLTS
Trigger: TGAGGTCAGCACCCACTTCCACGAGGTCCTGAAACT...AGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGAGTGGCTCTTTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp AAGGAAGTGGGGTTGTTTGCTGACAGCATTGACAGACACACAGAGGTCCCCACATTGTATTCTCCAGAGTaGCCCTTAATGATGGCTTGG +
Preference number: 4 (lower is better)
Translates to: KEVGLFADSIDRHTEVPTLYSPE*PLMMAW
Trigger: CCAAGCCATCATTAAGGGCCACTCTGGAGAATACAA...TGTGGGGACCTCTGTGTGTCTGTCAATGCTGTCAGCAAACAACCCCACTTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp CCCACAAAGCTATTCCTGTTGTCACAGGAGGTTGGGGCACTGGCTCTGAGCAGGCATTGCTTAAAACCTTaGAGGAGACACAGCTTTTTA +
Preference number: 4 (lower is better)
Translates to: PTKLFLLSQEVGALALSRHCLKP*RRHSFL
Trigger: TAAAAAGCTGTGTCTCCTCCAAGGTTTTAAGCAATG...CCTGCTCAGAGCCAGTGCCCCAACCTCCTGTGACAACAGGAATAGCTTTGTGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR CAA 72 bp GGACTGGGGGAAATGTCAGTTTTGAGAGAGAGTTCTTaGCTCATGAAGGGTCAGTTGGCTCTGGGATATGCA +
Preference number: 4 (lower is better)
Translates to: GLGEMSVLRESS*LMKGQLALGYA
Trigger: TGCATATCCCAGAGCCAACTGACCCTTCATGAGCAAAGAACTCTCTCTCAAAACTGACATTTCCCCCAGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
3UTR CAA 72 bp AATGCAGCCTGGGAAGGACTGGGGGAAATGTCAGTTTaGAGAGAGAGTTCTTTGCTCATGAAGGGTCAGTTG +
Preference number: 4 (lower is better)
Translates to: NAAWEGLGEMSV*RESSLLMKGQL
Trigger: CAACTGACCCTTCATGAGCAAAGAACTCTCTCTCAAAACTGACATTTCCCCCAGTCCTTCCCAGGCTGCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR TCA 90 bp AGGACTGCTCCAGCGAGCTTGCAAGGTTCCTTTGACATCAGAAACATAAAAGGATCTGCATGGCCAGGTTaGCACGGATGTAGAAGGAAT +
Preference number: 4 (lower is better)
Translates to: RTAPASLQGSFDIRNIKGSAWPG*HGCRRN
Trigger: ATTCCTTCTACATCCGTGTCAACCTGGCCATGCAGA...TCCTTTTATGTTTCTGATGTCAAAGGAACCTTGCAAGCTCGCTGGAGCAGTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp AGAAACATAAAAGGAAGGGCCAGAACCCACAAAGCTATTCCTGTTGTCACAGGAAAGTCAATGTCAGACTaGAGCCCAGTGACCAGGGTG +
Preference number: 4 (lower is better)
Translates to: RNIKGRARTHKAIPVVTGKSMSD*SPVTRV
Trigger: CACCCTGGTCACTGGGCTGCAGTCTGACATTGACTT...TCCTGTGACAACAGGAATAGCTTTGTGGGTTCTGGCCCTTCCTTTTATGTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp GTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCTACTCTGCTGAACATTaGTTAAAACCTTGGAGGAGA +
Preference number: 4 (lower is better)
Translates to: VHYSTFICRCLWQHLAVSYSAEH*LKPWRR
Trigger: TCTCCTCCAAGGTTTTAAGCAATGTTCAGCAGAGTA...GCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp AGGAAGTGGGGTTGTTTGCTGACAGCATTGACAGACACACAGAGGTCCCCACAGCATTGCTTAAAACCTTaGAGGAGACACAGCTTTTTA +
Preference number: 4 (lower is better)
Translates to: RKWGCLLTALTDTQRSPQHCLKP*RRHSFL
Trigger: TAAAAAGCTGTGTCTCCTCCAAGGTTTTAAGCAATG...CTGTGGGGACCTCTGTGTGTCTGTCAATGCTGTCAGCAAACAACCCCACTTCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR GCA 90 bp TGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCATACTCTGCTGAACATTaGTTAAAACCTTGGAGGAGA +
Preference number: 4 (lower is better)
Translates to: CTTAPSFADVCGSTWLLAYSAEH*LKPWRR
Trigger: TCTCCTCCAAGGTTTTAAGCAATGTTCAGCAGAGTA...TGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp TTGCAAGGTTCCTTTGACATCAGAAACATAAAAGGAAGGGCCAGAACCCACAAAGTGGCATACTCCTCCTaGCTCAAGTACTCTGCTGAA +
Preference number: 4 (lower is better)
Translates to: LQGSFDIRNIKGRARTHKVAYSS*LKYSAE
Trigger: TTCAGCAGAGTACTTGAGCCAGGAGGAGTATGCCAC...TTTGTGGGTTCTGGCCCTTCCTTTTATGTTTCTGATGTCAAAGGAACCTTGCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp GTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCTCATTGACAGAGACATaGATGATAATGGGAAACATG +
Preference number: 4 (lower is better)
Translates to: VHYSTFICRCLWQHLAVSSLTET*MIMGNM
Trigger: CATGTTTCCCATTATCATCCATGTCTCTGTCAATGA...GCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CCA 90 bp TGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCATCATTGACAGAGACATaGATGATAATGGGAAACATG +
Preference number: 4 (lower is better)
Translates to: CTTAPSFADVCGSTWLLASLTET*MIMGNM
Trigger: CATGTTTCCCATTATCATCCATGTCTCTGTCAATGA...TGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 90 bp CCGGAGGCAGAGTTCCCTGGCTCCGGCTTCCTGCTTGGGTCCTCCTaGGGCCTCCGCCTGCAGCCTGCGCAGCTGAGTACGCAGCTCACA +
Preference number: 5 (lower is better)
Translates to: PEAEFPGSGFLLGSS*GLRLQPAQLSTQLT
Trigger: TGTGAGCTGCGTACTCAGCTGCGCAGGCTGCAGGCGGAGGCCCCAGGAGGACCCAAGCAGGAAGCCGGAGCCAGGGAACTCTGCCTCCGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 90 bp CTAGGCACAAACAGCACAGGCCGGGGCCGGGCAGGCCTGTGGGGGTaGACCAGGGTGTACGGTGCCAGGGTGAAGCAGCTCTCTGACCAG +
Preference number: 5 (lower is better)
Translates to: LGTNSTGRGRAGLWG*TRVYGARVKQLSDQ
Trigger: CTGGTCAGAGAGCTGCTTCACCCTGGCACCGTACACCCTGGTGCACCCCCACAGGCCTGCCCGGCCCCGGCCTGTGCTGTTTGTGCCTAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 90 bp CATGCATCCGCACAAGCCTCTGCTTCCCCCGGAGGCAGAGTTCCCTaGCTCCGGCTTCCTGCTTGGGTCCTCCTGGGGCCTCCGCCTGCA +
Preference number: 5 (lower is better)
Translates to: HASAQASASPGGRVP*LRLPAWVLLGPPPA
Trigger: TGCAGGCGGAGGCCCCAGGAGGACCCAAGCAGGAAGCCGGAGCCAGGGAACTCTGCCTCCGGGGGAAGCAGAGGCTTGTGCGGATGCATG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 90 bp AGTCCTCTGCCACCCGCTTGTACAGGGACTGCTGGCTGGGAGGCATaGGGCTGCTGGAGCGGAAGCTGTCCATCTGCTCCCGGCTGGATG +
Preference number: 5 (lower is better)
Translates to: SPLPPACTGTAGWEA*GCWSGSCPSAPGWM
Trigger: CATCCAGCCGGGAGCAGATGGACAGCTTCCGCTCCAGCAGCCCCATGCCTCCCAGCCAGCAGTCCCTGTACAAGCGGGTGGCAGAGGACT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp CCACGGTGCTCCAGAGTCAGGCCCCCGCCCTGGGCAGGAAGGACTGCTCCAGCGAGACACTCGGTCAGCTaGGATGTCTCCATGAGACCG +
Preference number: 5 (lower is better)
Translates to: PRCSRVRPPPWAGRTAPARHSVS*DVSMRP
Trigger: CGGTCTCATGGAGACATCCAAGCTGACCGAGTGTCT...CGCTGGAGCAGTCCTTCCTGCCCAGGGCGGGGGCCTGACTCTGGAGCACCGTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 90 bp TTCATGCGGCTGTGGTCGACCTCCAGCTGGCGCAGACCTTCTGCGTaGGCCTCAGCCAAGCCCAGGCGCTCCTTCAGCTGCTGGCATCTC +
Preference number: 5 (lower is better)
Translates to: FMRLWSTSSWRRPSA*ASAKPRRSFSCWHL
Trigger: GAGATGCCAGCAGCTGAAGGAGCGCCTGGGCTTGGCTGAGGCTCACGCAGAAGGTCTGCGCCAGCTGGAGGTCGACCACAGCCGCATGAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 90 bp ACGTTTCATGCGGCTGTGGTCGACCTCCAGCTGGCGCAGACCTTCTaGGTGAGCCTCAGCCAAGCCCAGGCGCTCCTTCAGCTGCTGGCA +
Preference number: 5 (lower is better)
Translates to: TFHAAVVDLQLAQTF*VSLSQAQALLQLLA
Trigger: TGCCAGCAGCTGAAGGAGCGCCTGGGCTTGGCTGAGGCTCACGCAGAAGGTCTGCGCCAGCTGGAGGTCGACCACAGCCGCATGAAACGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 90 bp TCTGCTGCCTCTCCGCGGCCACTGCTCTCTCCCGCAGTGAGTGGATaGGGTCCACCAGCTCTTGCTTGCTCTCCCTGGCCTCATCCAGAC +
Preference number: 5 (lower is better)
Translates to: SAASPRPLLSPAVSG*GPPALACSPWPHPD
Trigger: GTCTGGATGAGGCCAGGGAGAGCAAGCAAGAGCTGGTGGACCGCATCCACTCACTGCGGGAGAGAGCAGTGGCCGCGGAGAGGCAGCAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 90 bp GAGGCATGGGGCTGCTGGAGCGGAAGCTGTCCATCTGCTCCCGGCTaGATGTGGAATTCAGGTCCCACCACAGCCGGGACTCTGTGGAGC +
Preference number: 5 (lower is better)
Translates to: EAWGCWSGSCPSAPG*MWNSGPTTAGTLWS
Trigger: GCTCCACAGAGTCCCGGCTGTGGTGGGACCTGAATTCCACATCCAGCCGGGAGCAGATGGACAGCTTCCGCTCCAGCAGCCCCATGCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp GAGTCAGGCCCCCGCCCTGGGCAGGAAGGACTGCTCCAGCGAGCTTGCAAGGTTTCTGGGCCCTGTCCCTaGCTGTGTATGCCTGGTCAC +
Preference number: 5 (lower is better)
Translates to: ESGPRPGQEGLLQRACKVSGPCP*LCMPGH
Trigger: GTGACCAGGCATACACAGCAAGGGACAGGGCCCAGA...AACCTTGCAAGCTCGCTGGAGCAGTCCTTCCTGCCCAGGGCGGGGGCCTGACTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 90 bp CACCAATCTGTTCCAGCAACGCGTCCCCTTGGAACGCCAGCACCGTaGCCTGGCTTAGGATCTTGCGGGCTGGCCTCCTCCTCACGGGGA +
Preference number: 5 (lower is better)
Translates to: HQSVPATRPLGTPAP*PGLGSCGLASSSRG
Trigger: TCCCCGTGAGGAGGAGGCCAGCCCGCAAGATCCTAAGCCAGGTCACGGTGCTGGCGTTCCAAGGGGACGCGTTGCTGGAACAGATTGGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 90 bp CCGGGACTCTGTGGAGCTGAGGAGGCTGCAGTCACTGTCATCTGGTaGGCACACAGCATGCATCCGCACAAGCCTCTGCTTCCCCCGGAG +
Preference number: 5 (lower is better)
Translates to: PGLCGAEEAAVTVIW*AHSMHPHKPLLPPE
Trigger: CTCCGGGGGAAGCAGAGGCTTGTGCGGATGCATGCTGTGTGCCCACCAGATGACAGTGACTGCAGCCTCCTCAGCTCCACAGAGTCCCGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 90 bp ATCTGTTCCAGCAACGCGTCCCCTTGGAACGCCAGCACCGTGACCTaGCTTAGGATCTTGCGGGCTGGCCTCCTCCTCACGGGGACACTG +
Preference number: 5 (lower is better)
Translates to: ICSSNASPWNASTVT*LRILRAGLLLTGTL
Trigger: CAGTGTCCCCGTGAGGAGGAGGCCAGCCCGCAAGATCCTAAGCCAGGTCACGGTGCTGGCGTTCCAAGGGGACGCGTTGCTGGAACAGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp TGGCTCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCGCTCCGGCTTCCTGCTaGGGTCCTCCTGGGGCCTCC +
Preference number: 5 (lower is better)
Translates to: WLWDMHQSNLGFGVRHRGAPASC*GPPGAS
Trigger: GGAGGCCCCAGGAGGACCCAAGCAGGAAGCCGGAGC...GCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp CCTGTTGTCACAGGAGGTTGGGGCACTGGCTCTGAGCAGGTCTCAGGGAGTACCCAGCAACGCGTCCCCTaGGAACGCCAGCACCGTGAC +
Preference number: 5 (lower is better)
Translates to: PVVTGGWGTGSEQVSGSTQQRVP*ERQHRD
Trigger: GTCACGGTGCTGGCGTTCCAAGGGGACGCGTTGCTG...GGTACTCCCTGAGACCTGCTCAGAGCCAGTGCCCCAACCTCCTGTGACAACAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 90 bp TCACTGTCATCTGGTGGGCACACAGCATGCATCCGCACAAGCCTCTaGTTCCCCCGGAGGCAGAGTTCCCTGGCTCCGGCTTCCTGCTTG +
Preference number: 5 (lower is better)
Translates to: SLSSGGHTACIRTSL*FPRRQSSLAPASCL
Trigger: CAAGCAGGAAGCCGGAGCCAGGGAACTCTGCCTCCGGGGGAAGCAGAGGCTTGTGCGGATGCATGCTGTGTGCCCACCAGATGACAGTGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 90 bp GAGCTGAGGAGGCTGCAGTCACTGTCATCTGGTGGGCACACAGCATaGATCCGCACAAGCCTCTGCTTCCCCCGGAGGCAGAGTTCCCTG +
Preference number: 5 (lower is better)
Translates to: ELRRLQSLSSGGHTA*IRTSLCFPRRQSSL
Trigger: CAGGGAACTCTGCCTCCGGGGGAAGCAGAGGCTTGTGCGGATGCATGCTGTGTGCCCACCAGATGACAGTGACTGCAGCCTCCTCAGCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 90 bp CCTGGCTTAGGATCTTGCGGGCTGGCCTCCTCCTCACGGGGACACTaGTTTCTGAGACATTCAGGCTCCGGGAAGACCCCTGCAGGCTGT +
Preference number: 5 (lower is better)
Translates to: PGLGSCGLASSSRGH*FLRHSGSGKTPAGC
Trigger: ACAGCCTGCAGGGGTCTTCCCGGAGCCTGAATGTCTCAGAAAGCAGTGTCCCCGTGAGGAGGAGGCCAGCCCGCAAGATCCTAAGCCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 90 bp GTCTTCCGGAACTGGAGTAGGGTCTGTTCCTTCTCCTCCCAGTACTaGTTCTGCTGCCTCTCCGCGGCCACTGCTCTCTCCCGCAGTGAG +
Preference number: 5 (lower is better)
Translates to: VFRNWSRVCSFSSQY*FCCLSAATALSRSE
Trigger: CTCACTGCGGGAGAGAGCAGTGGCCGCGGAGAGGCAGCAGAAGCAGTACTGGGAGGAGAAGGAACAGACCCTACTCCAGTTCCGGAAGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 90 bp AGGTTCCCACCGATGACACCAATCTGTTCCAGCAACGCGTCCCCTTaGAACGCCAGCACCGTGACCTGGCTTAGGATCTTGCGGGCTGGC +
Preference number: 5 (lower is better)
Translates to: RFPPMTPICSSNASP*NASTVTWLRILRAG
Trigger: GCCAGCCCGCAAGATCCTAAGCCAGGTCACGGTGCTGGCGTTCCAAGGGGACGCGTTGCTGGAACAGATTGGTGTCATCGGTGGGAACCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp GGCTCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCACAGCAACGCGTCCCCTaGGAACGCCAGCACCGTGAC +
Preference number: 5 (lower is better)
Translates to: GSGICTKATWGLGLGTEAQQRVP*ERQHRD
Trigger: GTCACGGTGCTGGCGTTCCAAGGGGACGCGTTGCTG...TGCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 90 bp GGGCGCAGGGCCATCTCATCTGCTGCAGAGCCGGGGGTGACACGGTaGATGAAGATCCCAGTGAGGTTCCCACCGATGACACCAATCTGT +
Preference number: 5 (lower is better)
Translates to: GRRAISSAAEPGVTR*MKIPVRFPPMTPIC
Trigger: ACAGATTGGTGTCATCGGTGGGAACCTCACTGGGATCTTCATTCACCGTGTCACCCCCGGCTCTGCAGCAGATGAGATGGCCCTGCGCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 90 bp AGCAAGTGCCCAACTCTCATGGCACTGTTGGTGAAACGGGAGCTATaGAGGATCTCCTCCTCGTCCAGCTGGCCCAGCACCTTGGCCTGG +
Preference number: 5 (lower is better)
Translates to: SKCPTLMALLVKREL*RISSSSSWPSTLAW
Trigger: CCAGGCCAAGGTGCTGGGCCAGCTGGACGAGGAGGAGATCCTGCATAGCTCCCGTTTCACCAACAGTGCCATGAGAGTTGGGCACTTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 90 bp GCCACTGCTCTCTCCCGCAGTGAGTGGATGCGGTCCACCAGCTCTTaGTTGCTCTCCCTGGCCTCATCCAGACTCTGTTCCAGAATGTCC +
Preference number: 5 (lower is better)
Translates to: ATALSRSEWMRSTSS*LLSLASSRLCSRMS
Trigger: GGACATTCTGGAACAGAGTCTGGATGAGGCCAGGGAGAGCAAGCAAGAGCTGGTGGACCGCATCCACTCACTGCGGGAGAGAGCAGTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 90 bp CAGGCGCTGAGAAATCTCCATCTGGGCCCTGTCCCTTGCTGTGTATaGCTGGTCACGTTCCTTCTGCAGCTCAGCCACCTGGCCCTGAAG +
Preference number: 5 (lower is better)
Translates to: QALRNLHLGPVPCCV*LVTFLLQLSHLALK
Trigger: CTTCAGGGCCAGGTGGCTGAGCTGCAGAAGGAACGTGACCAGGCATACACAGCAAGGGACAGGGCCCAGATGGAGATTTCTCAGCGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 90 bp GTCCACCATCATGATCTGGGTACCAGGGCGCAGGGCCATCTCATCTaGTGCAGAGCCGGGGGTGACACGGTGAATGAAGATCCCAGTGAG +
Preference number: 5 (lower is better)
Translates to: VHHHDLGTRAQGHLI*CRAGGDTVNEDPSE
Trigger: CTCACTGGGATCTTCATTCACCGTGTCACCCCCGGCTCTGCAGCAGATGAGATGGCCCTGCGCCCTGGTACCCAGATCATGATGGTGGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 90 bp CTATGTAGGACTCGGACGCTGTCCAGCCGCACATCCAGCAGGGCGTaGGTGCTCATATTCATGAGGGACTCCACAGCATGCCGGGTGATC +
Preference number: 5 (lower is better)
Translates to: LCRTRTLSSRTSSRA*VLIFMRDSTACRVI
Trigger: GATCACCCGGCATGCTGTGGAGTCCCTCATGAATATGAGCACCCACGCCCTGCTGGATGTGCGGCTGGACAGCGTCCGAGTCCTACATAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp TCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCAGTGGCGGTCCACCAGCTCTaGCTTGCTCTCCCTGGCCTC +
Preference number: 5 (lower is better)
Translates to: SGICTKATWGLGLGTEAVAVHQL*LALPGL
Trigger: GAGGCCAGGGAGAGCAAGCAAGAGCTGGTGGACCGC...CACTGCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp CCTGTTGTCACAGGAGGTTGGGGCACTGGCTCTGAGCAGGTCTCAGGGAGTACCGGACCACCTTCCTCCTaGCCAGAATCCCACTGGCTT +
Preference number: 5 (lower is better)
Translates to: PVVTGGWGTGSEQVSGSTGPPSS*PESHWL
Trigger: AAGCCAGTGGGATTCTGGCAAGGAGGAAGGTGGTCC...GGTACTCCCTGAGACCTGCTCAGAGCCAGTGCCCCAACCTCCTGTGACAACAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 90 bp TCAGCATCTCGTCCTTCAGTTTCAGGACCTCGTGGAAGTGGGTGCTaGCCTCACGTTTCATGCGGCTGTGGTCGACCTCCAGCTGGCGCA +
Preference number: 5 (lower is better)
Translates to: SASRPSVSGPRGSGC*PHVSCGCGRPPAGA
Trigger: TGCGCCAGCTGGAGGTCGACCACAGCCGCATGAAACGTGAGGTCAGCACCCACTTCCACGAGGTCCTGAAACTGAAGGACGAGATGCTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 90 bp TGGATGTGGAATTCAGGTCCCACCACAGCCGGGACTCTGTGGAGCTaGGGAGGCTGCAGTCACTGTCATCTGGTGGGCACACAGCATGCA +
Preference number: 5 (lower is better)
Translates to: WMWNSGPTTAGTLWS*GGCSHCHLVGTQHA
Trigger: TGCATGCTGTGTGCCCACCAGATGACAGTGACTGCAGCCTCCTCAGCTCCACAGAGTCCCGGCTGTGGTGGGACCTGAATTCCACATCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 90 bp TGCCGGGCCACCTCCAGGAACTGCTCCTCCGAGCTGCCAAGCCGATaGAGGCCCTTCCTGAGTTTCTTTGCTGTCTTCTCATTGACAGAG +
Preference number: 5 (lower is better)
Translates to: CRATSRNCSSELPSR*RPFLSFFAVFSLTE
Trigger: CTCTGTCAATGAGAAGACAGCAAAGAAACTCAGGAAGGGCCTGCATCGGCTTGGCAGCTCGGAGGAGCAGTTCCTGGAGGTGGCCCGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp TGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCAGCTCCGGCTTCCTGCTaGGGTCCTCCTGGGGCCTCC +
Preference number: 5 (lower is better)
Translates to: CTTAPSFADVCGSTWLLAAPASC*GPPGAS
Trigger: GGAGGCCCCAGGAGGACCCAAGCAGGAAGCCGGAGC...TGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp ATGGGGGCTTCACCCAAGTGTGGCGCAATGCAGCCTGGGAAGGACTGGGGGAAAGTCATTGCAGTGAGTTaGCAGTTCTCCGTCCCCTCC +
Preference number: 5 (lower is better)
Translates to: MGASPKCGAMQPGKDWGKVIAVS*QFSVPS
Trigger: GGAGGGGACGGAGAACTGCAAACTCACTGCAATGAC...TTTCCCCCAGTCCTTCCCAGGCTGCATTGCGCCACACTTGGGTGAAGCCCCCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp AAGGAAGTGGGGTTGTTTGCTGACAGCATTGACAGACACACAGAGGTCCCCACAGGTCCTCCAGGAGGCTaGCGGGGGACTGTGCACCGT +
Preference number: 5 (lower is better)
Translates to: KEVGLFADSIDRHTEVPTGPPGG*RGTVHR
Trigger: ACGGTGCACAGTCCCCCGCAAGCCTCCTGGAGGACC...TGTGGGGACCTCTGTGTGTCTGTCAATGCTGTCAGCAAACAACCCCACTTCCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp CCACGGTGCTCCAGAGTCAGGCCCCCGCCCTGGGCAGGAAGGACTGCTCCAGCGACATTGCTTAAAACCTaGGAGGAGACACAGCTTTTT +
Preference number: 5 (lower is better)
Translates to: PRCSRVRPPPWAGRTAPATLLKT*EETQLF
Trigger: AAAAAGCTGTGTCTCCTCCAAGGTTTTAAGCAATGT...CGCTGGAGCAGTCCTTCCTGCCCAGGGCGGGGGCCTGACTCTGGAGCACCGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 90 bp CTTCCTGAAGGCTGTGGCAGCGTGTGGCAGCCAGCTCCTTCTCTCTaGGTGCGTTGCTGTAGTGCAGTGACAGGTTCAGCATCTCGTCCT +
Preference number: 5 (lower is better)
Translates to: LPEGCGSVWQPAPSL*VRCCSAVTGSASRP
Trigger: AGGACGAGATGCTGAACCTGTCACTGCACTACAGCAACGCACTCAGAGAGAAGGAGCTGGCTGCCACACGCTGCCACAGCCTTCAGGAAG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 90 bp CTGCTCTCTCCCGCAGTGAGTGGATGCGGTCCACCAGCTCTTGCTTaGTCTCCCTGGCCTCATCCAGACTCTGTTCCAGAATGTCCTTCT +
Preference number: 5 (lower is better)
Translates to: LLSPAVSGCGPPALA*SPWPHPDSVPECPS
Trigger: AGAAGGACATTCTGGAACAGAGTCTGGATGAGGCCAGGGAGAGCAAGCAAGAGCTGGTGGACCGCATCCACTCACTGCGGGAGAGAGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 90 bp GACAGGTTCAGCATCTCGTCCTTCAGTTTCAGGACCTCGTGGAAGTaGGTGCTGACCTCACGTTTCATGCGGCTGTGGTCGACCTCCAGC +
Preference number: 5 (lower is better)
Translates to: DRFSISSFSFRTSWK*VLTSRFMRLWSTSS
Trigger: GCTGGAGGTCGACCACAGCCGCATGAAACGTGAGGTCAGCACCCACTTCCACGAGGTCCTGAAACTGAAGGACGAGATGCTGAACCTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 90 bp GAGCCTGTGAATAGTTGGGGATGGTGCCAGGCTCCATGTCTTTCATaGTGTAGGGGTTCACATGGTGGGCATGCCAGCAGCTGCGGCCTT +
Preference number: 5 (lower is better)
Translates to: EPVNSWGWCQAPCLS*CRGSHGGHASSCGL
Trigger: AAGGCCGCAGCTGCTGGCATGCCCACCATGTGAACCCCTACACCATGAAAGACATGGAGCCTGGCACCATCCCCAACTATTCACAGGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp AACCTGGGGTTTGGGGTTAGGCACAGAGGCAGTGAGTCAAAGAGCCACTCAAGTTCCTCTGCCACCCGCTaGTACAGGGACTGCTGGCTG +
Preference number: 5 (lower is better)
Translates to: NLGFGVRHRGSESKSHSSSSATR*YRDCWL
Trigger: CAGCCAGCAGTCCCTGTACAAGCGGGTGGCAGAGGA...ACTTGAGTGGCTCTTTGACTCACTGCCTCTGTGCCTAACCCCAAACCCCAGGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp GGGCCAGAACCCACAAAGCTATTCCTGTTGTCACAGGAGGTTGGGGCACTGGCTGGGGACTGTGCACCGTaGAGTCATGTCCTGGATGAG +
Preference number: 5 (lower is better)
Translates to: GPEPTKLFLLSQEVGALAGDCAP*SHVLDE
Trigger: CTCATCCAGGACATGACTCAACGGTGCACAGTCCCC...AGCCAGTGCCCCAACCTCCTGTGACAACAGGAATAGCTTTGTGGGTTCTGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 90 bp CCTTTAGCAGATCCAGCAAGTGCCCAACTCTCATGGCACTGTTGGTaGAACGGGAGCTATGCAGGATCTCCTCCTCGTCCAGCTGGCCCA +
Preference number: 5 (lower is better)
Translates to: PLADPASAQLSWHCW*NGSYAGSPPRPAGP
Trigger: TGGGCCAGCTGGACGAGGAGGAGATCCTGCATAGCTCCCGTTTCACCAACAGTGCCATGAGAGTTGGGCACTTGCTGGATCTGCTAAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 90 bp GCTCCGGGAAGACCCCTGCAGGCTGTCTTCTGTCTGAGAGAGGTCTaGTCCGTCAATCATCTCAAACTCCAGGTCTGTGTCTGTGTCGTC +
Preference number: 5 (lower is better)
Translates to: APGRPLQAVFCLREV*SVNHLKLQVCVCVV
Trigger: GACGACACAGACACAGACCTGGAGTTTGAGATGATTGACGGAGCAGACCTCTCTCAGACAGAAGACAGCCTGCAGGGGTCTTCCCGGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 90 bp TGCAGTGACAGGTTCAGCATCTCGTCCTTCAGTTTCAGGACCTCGTaGAAGTGGGTGCTGACCTCACGTTTCATGCGGCTGTGGTCGACC +
Preference number: 5 (lower is better)
Translates to: CSDRFSISSFSFRTS*KWVLTSRFMRLWST
Trigger: GGTCGACCACAGCCGCATGAAACGTGAGGTCAGCACCCACTTCCACGAGGTCCTGAAACTGAAGGACGAGATGCTGAACCTGTCACTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp GTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCACCTGGCTTAGGATCTaGCGGGCTGGCCTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: VHYSTFICRCLWQHLAVSTWLRI*RAGLLL
Trigger: GAGGAGGAGGCCAGCCCGCAAGATCCTAAGCCAGGT...GCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp AGGAAGTGGGGTTGTTTGCTGACAGCATTGACAGACACACAGAGGTCCCCACAGCCAGCAGCTGCGGCCTaGGAACATGGTGTCAGTGAC +
Preference number: 5 (lower is better)
Translates to: RKWGCLLTALTDTQRSPQPAAAA*EHGVSD
Trigger: GTCACTGACACCATGTTCCAAGGCCGCAGCTGCTGG...CTGTGGGGACCTCTGTGTGTCTGTCAATGCTGTCAGCAAACAACCCCACTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp GTTGGCTCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGGGGACTGTGCACCGTaGAGTCATGTCCTGGATGAG +
Preference number: 5 (lower is better)
Translates to: VGSGICTKATWGLGLGTEGDCAP*SHVLDE
Trigger: CTCATCCAGGACATGACTCAACGGTGCACAGTCCCC...CTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGAGCCAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp TCTGGGATATGCACCAAAGCAACCTGGGGTTTGGGGTTAGGCACAGAGGCAGTGGGACCACCTTCCTCCTaGCCAGAATCCCACTGGCTT +
Preference number: 5 (lower is better)
Translates to: SGICTKATWGLGLGTEAVGPPSS*PESHWL
Trigger: AAGCCAGTGGGATTCTGGCAAGGAGGAAGGTGGTCC...CACTGCCTCTGTGCCTAACCCCAAACCCCAGGTTGCTTTGGTGCATATCCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 90 bp GCAATGGCTCCATTCTTCCCTCGGGCCTTTAGCAGATCCAGCAAGTaGCCAACTCTCATGGCACTGTTGGTGAAACGGGAGCTATGCAGG +
Preference number: 5 (lower is better)
Translates to: AMAPFFPRAFSRSSK*PTLMALLVKRELCR
Trigger: CCTGCATAGCTCCCGTTTCACCAACAGTGCCATGAGAGTTGGGCACTTGCTGGATCTGCTAAAGGCCCGAGGGAAGAATGGAGCCATTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp CCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCAGCTGAGTCAGCTTCTGGGCCCTGTCCCTaGCTGTGTATGCCTGGTCAC +
Preference number: 5 (lower is better)
Translates to: PSFADVCGSTWLLAAESASGPCP*LCMPGH
Trigger: GTGACCAGGCATACACAGCAAGGGACAGGGCCCAGA...AGCTGACTCAGCTGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp AAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTTCCTCTGCCACCCGCTaGTACAGGGACTGCTGGCTG +
Preference number: 5 (lower is better)
Translates to: KSVHYSTFICRCLWQHLASSATR*YRDCWL
Trigger: CAGCCAGCAGTCCCTGTACAAGCGGGTGGCAGAGGA...AGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp TCAAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGACCTGGCTTAGGATCTaGCGGGCTGGCCTCCTCCTC +
Preference number: 5 (lower is better)
Translates to: SSLCTTAPSFADVCGSTWTWLRI*RAGLLL
Trigger: GAGGAGGAGGCCAGCCCGCAAGATCCTAAGCCAGGT...CCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp AGTCAAAGAGCCACTCAAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGGTCCTCCAGGAGGCTaGCGGGGGACTGTGCACCGT +
Preference number: 5 (lower is better)
Translates to: SQRATQVCALQHLHLQMSGPPGG*RGTVHR
Trigger: ACGGTGCACAGTCCCCCGCAAGCCTCCTGGAGGACC...AGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGAGTGGCTCTTTGACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 90 bp TGTGGCAGCCAGCTCCTTCTCTCTGAGTGCGTTGCTGTAGTGCAGTaGCAGGTTCAGCATCTCGTCCTTCAGTTTCAGGACCTCGTGGAA +
Preference number: 5 (lower is better)
Translates to: CGSQLLLSECVAVVQ*QVQHLVLQFQDLVE
Trigger: TTCCACGAGGTCCTGAAACTGAAGGACGAGATGCTGAACCTGTCACTGCACTACAGCAACGCACTCAGAGAGAAGGAGCTGGCTGCCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 90 bp ATCTCAAACTCCAGGTCTGTGTCTGTGTCGTCCACTGTAGCCCCTTaGAGGCGCATCTCAAGGACTTCTGGGAAGCTTAGAGACTCGGGG +
Preference number: 5 (lower is better)
Translates to: ISNSRSVSVSSTVAP*RRISRTSGKLRDSG
Trigger: CCCCGAGTCTCTAAGCTTCCCAGAAGTCCTTGAGATGCGCCTTCAAGGGGCTACAGTGGACGACACAGACACAGACCTGGAGTTTGAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp TGGGGTTGTTTGCTGACAGCATTGACAGACACACAGAGGTCCCCACAGTCCCAAGTCATTGCAGTGAGTTaGCAGTTCTCCGTCCCCTCC +
Preference number: 5 (lower is better)
Translates to: WGCLLTALTDTQRSPQSQVIAVS*QFSVPS
Trigger: GGAGGGGACGGAGAACTGCAAACTCACTGCAATGAC...TTGGGACTGTGGGGACCTCTGTGTGTCTGTCAATGCTGTCAGCAAACAACCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp AAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTCCAGCAGCTGCGGCCTaGGAACATGGTGTCAGTGAC +
Preference number: 5 (lower is better)
Translates to: KSVHYSTFICRCLWQHLAPAAAA*EHGVSD
Trigger: GTCACTGACACCATGTTCCAAGGCCGCAGCTGCTGG...AGCCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp CCTTCATTTGCAGATGTCTGTGGCAGCACTTGGCTGTTAGCAGCTGAGTCAGCTAGACACTCGGTCAGCTaGGATGTCTCCATGAGACCG +
Preference number: 5 (lower is better)
Translates to: PSFADVCGSTWLLAAESARHSVS*DVSMRP
Trigger: CGGTCTCATGGAGACATCCAAGCTGACCGAGTGTCT...AGCTGACTCAGCTGCTAACAGCCAAGTGCTGCCACAGACATCTGCAAATGAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp AGAAACATAAAAGGAAGGGCCAGAACCCACAAAGCTATTCCTGTTGTCACAGGAGCGGTCCACCAGCTCTaGCTTGCTCTCCCTGGCCTC +
Preference number: 5 (lower is better)
Translates to: RNIKGRARTHKAIPVVTGAVHQL*LALPGL
Trigger: GAGGCCAGGGAGAGCAAGCAAGAGCTGGTGGACCGC...TCCTGTGACAACAGGAATAGCTTTGTGGGTTCTGGCCCTTCCTTTTATGTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 90 bp CGGAGTTTCTCATTCTCCTCCTTAAGCCGATTTAGTTCTTCTCCCTaGGGCTCCAGGTTGCTGGCCATCTTCAGGGACCTCTCTCGAGAT +
Preference number: 5 (lower is better)
Translates to: RSFSFSSLSRFSSSP*GSRLLAIFRDLSRD
Trigger: ATCTCGAGAGAGGTCCCTGAAGATGGCCAGCAACCTGGAGCCTCAGGGAGAAGAACTAAATCGGCTTAAGGAGGAGAATGAGAAACTCCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 90 bp ACCACCTTCCTCCTTGCCAGAATCCCACTGGCTTTGGTCAAAGGATaGAGTCAGAGGACTGACAGCGGCTTTGTCCACACTGACAATTCG +
Preference number: 5 (lower is better)
Translates to: TTFLLARIPLALVKG*SQRTDSGFVHTDNS
Trigger: CGAATTGTCAGTGTGGACAAAGCCGCTGTCAGTCCTCTGACTTCATCCTTTGACCAAAGCCAGTGGGATTCTGGCAAGGAGGAAGGTGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 90 bp TGTAGACATCAGGGTTGTGGAACTTCAGGCTTTCCAGAAAGGCAATaGCTCCATTCTTCCCTCGGGCCTTTAGCAGATCCAGCAAGTGCC +
Preference number: 5 (lower is better)
Translates to: CRHQGCGTSGFPERQ*LHSSLGPLADPASA
Trigger: GGCACTTGCTGGATCTGCTAAAGGCCCGAGGGAAGAATGGAGCCATTGCCTTTCTGGAAAGCCTGAAGTTCCACAACCCTGATGTCTACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 90 bp CCTGGTCACGTTCCTTCTGCAGCTCAGCCACCTGGCCCTGAAGCATaGTCATCTTTTCTTTGTATAGTTCACAGTCCACCTGTGTCTTCC +
Preference number: 5 (lower is better)
Translates to: PGHVPSAAQPPGPEA*SSFLCIVHSPPVSS
Trigger: GGAAGACACAGGTGGACTGTGAACTATACAAAGAAAAGATGACCATGCTTCAGGGCCAGGTGGCTGAGCTGCAGAAGGAACGTGACCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp GGCAGAATATTTTCCGGTCCTCCATCAGCCCAGGCCATGCTGTGTGAAGGTGGCTTTGCTGTCTTCTCATaGACAGAGACATGGATGATA +
Preference number: 5 (lower is better)
Translates to: GRIFSGPPSAQAMLCEGGFAVFS*TETWMI
Trigger: TATCATCCATGTCTCTGTCAATGAGAAGACAGCAAA...GCCACCTTCACACAGCATGGCCTGGGCTGATGGAGGACCGGAAAATATTCTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp AAGGGCCAGAACCCACAAAGCTATTCCTGTTGTCACAGGAGGTTGGGGCACTGGTTTGCTGTCTTCTCATaGACAGAGACATGGATGATA +
Preference number: 5 (lower is better)
Translates to: KGQNPQSYSCCHRRLGHWFAVFS*TETWMI
Trigger: TATCATCCATGTCTCTGTCAATGAGAAGACAGCAAA...CCAGTGCCCCAACCTCCTGTGACAACAGGAATAGCTTTGTGGGTTCTGGCCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp AGGAAGTGGGGTTGTTTGCTGACAGCATTGACAGACACACAGAGGTCCCCACAGACATTGCTTAAAACCTaGGAGGAGACACAGCTTTTT +
Preference number: 5 (lower is better)
Translates to: RKWGCLLTALTDTQRSPQTLLKT*EETQLF
Trigger: AAAAAGCTGTGTCTCCTCCAAGGTTTTAAGCAATGT...CTGTGGGGACCTCTGTGTGTCTGTCAATGCTGTCAGCAAACAACCCCACTTCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 90 bp AGGCCCTTCCTGAGTTTCTTTGCTGTCTTCTCATTGACAGAGACATaGATGATAATGGGAAACATGTCCATCCTATGTAGGACTCGGACG +
Preference number: 5 (lower is better)
Translates to: RPFLSFFAVFSLTET*MIMGNMSILCRTRT
Trigger: CGTCCGAGTCCTACATAGGATGGACATGTTTCCCATTATCATCCATGTCTCTGTCAATGAGAAGACAGCAAAGAAACTCAGGAAGGGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS-3UTR CAA 90 bp TCAAGTCTGTGCACTACAGCACCTTCATTTGCAGATGTCTGTGGCAGCACTTGGATGGTCATCTTTTCTTaGTATAGTTCACAGTCCACC +
Preference number: 5 (lower is better)
Translates to: SSLCTTAPSFADVCGSTWMVIFS*YSSQST
Trigger: GGTGGACTGTGAACTATACAAAGAAAAGATGACCAT...CCAAGTGCTGCCACAGACATCTGCAAATGAAGGTGCTGTAGTGCACAGACTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 90 bp TACTCCTCCTGGCTCAAGTACTCTGCTGAACATTGCTTAAAACCTTaGAGGAGACACAGCTTTTTACCCAGGATCCTTCCAACTAATCTA +
Preference number: 5 (lower is better)
Translates to: YSSWLKYSAEHCLKP*RRHSFLPRILPTNL
Trigger: TAGATTAGTTGGAAGGATCCTGGGTAAAAAGCTGTGTCTCCTCCAAGGTTTTAAGCAATGTTCAGCAGAGTACTTGAGCCAGGAGGAGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 72 bp TTCCCCCGGAGGCAGAGTTCCCTGGCTCCGGCTTCCTaGTTGGGTCCTCCTGGGGCCTCCGCCTGCAGCCTG +
Preference number: 6 (lower is better)
Translates to: FPRRQSSLAPAS*LGPPGASACSL
Trigger: CAGGCTGCAGGCGGAGGCCCCAGGAGGACCCAAGCAGGAAGCCGGAGCCAGGGAACTCTGCCTCCGGGGGAA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 72 bp AACAGCACAGGCCGGGGCCGGGCAGGCCTGTGGGGGTaGACCAGGGTGTACGGTGCCAGGGTGAAGCAGCTC +
Preference number: 6 (lower is better)
Translates to: NSTGRGRAGLWG*TRVYGARVKQL
Trigger: GAGCTGCTTCACCCTGGCACCGTACACCCTGGTGCACCCCCACAGGCCTGCCCGGCCCCGGCCTGTGCTGTT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 72 bp CCTGCTTGGGTCCTCCTGGGGCCTCCGCCTGCAGCCTaGGCAGCTGAGTACGCAGCTCACAGACCTGCTCCG +
Preference number: 6 (lower is better)
Translates to: PAWVLLGPPPAA*AAEYAAHRPAP
Trigger: CGGAGCAGGTCTGTGAGCTGCGTACTCAGCTGCGCAGGCTGCAGGCGGAGGCCCCAGGAGGACCCAAGCAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 72 bp CTGTGGTCGACCTCCAGCTGGCGCAGACCTTCTGCGTaGGCCTCAGCCAAGCCCAGGCGCTCCTTCAGCTGC +
Preference number: 6 (lower is better)
Translates to: LWSTSSWRRPSA*ASAKPRRSFSC
Trigger: GCAGCTGAAGGAGCGCCTGGGCTTGGCTGAGGCTCACGCAGAAGGTCTGCGCCAGCTGGAGGTCGACCACAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 72 bp CCACCCGCTTGTACAGGGACTGCTGGCTGGGAGGCATaGGGCTGCTGGAGCGGAAGCTGTCCATCTGCTCCC +
Preference number: 6 (lower is better)
Translates to: PPACTGTAGWEA*GCWSGSCPSAP
Trigger: GGGAGCAGATGGACAGCTTCCGCTCCAGCAGCCCCATGCCTCCCAGCCAGCAGTCCCTGTACAAGCGGGTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 72 bp GTTCCAGCAACGCGTCCCCTTGGAACGCCAGCACCGTaGCCTGGCTTAGGATCTTGCGGGCTGGCCTCCTCC +
Preference number: 6 (lower is better)
Translates to: VPATRPLGTPAP*PGLGSCGLASS
Trigger: GGAGGAGGCCAGCCCGCAAGATCCTAAGCCAGGTCACGGTGCTGGCGTTCCAAGGGGACGCGTTGCTGGAAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 72 bp TCTCCGCGGCCACTGCTCTCTCCCGCAGTGAGTGGATaGGGTCCACCAGCTCTTGCTTGCTCTCCCTGGCCT +
Preference number: 6 (lower is better)
Translates to: SPRPLLSPAVSG*GPPALACSPWP
Trigger: AGGCCAGGGAGAGCAAGCAAGAGCTGGTGGACCGCATCCACTCACTGCGGGAGAGAGCAGTGGCCGCGGAGA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 72 bp TCTGGTGGGCACACAGCATGCATCCGCACAAGCCTCTaGTTCCCCCGGAGGCAGAGTTCCCTGGCTCCGGCT +
Preference number: 6 (lower is better)
Translates to: SGGHTACIRTSL*FPRRQSSLAPA
Trigger: AGCCGGAGCCAGGGAACTCTGCCTCCGGGGGAAGCAGAGGCTTGTGCGGATGCATGCTGTGTGCCCACCAGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 72 bp AGCAACGCGTCCCCTTGGAACGCCAGCACCGTGACCTaGCTTAGGATCTTGCGGGCTGGCCTCCTCCTCACG +
Preference number: 6 (lower is better)
Translates to: SNASPWNASTVT*LRILRAGLLLT
Trigger: CGTGAGGAGGAGGCCAGCCCGCAAGATCCTAAGCCAGGTCACGGTGCTGGCGTTCCAAGGGGACGCGTTGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 72 bp GGTCCTCCAGGAGGCTTGCGGGGGACTGTGCACCGTTaGGTCATGTCCTGGATGAGGGCCAGAAGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: GPPGGLRGTVHR*VMSWMRARSCC
Trigger: GCAGCAGCTTCTGGCCCTCATCCAGGACATGACTCAACGGTGCACAGTCCCCCGCAAGCCTCCTGGAGGACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 72 bp GGCTGCTGGAGCGGAAGCTGTCCATCTGCTCCCGGCTaGATGTGGAATTCAGGTCCCACCACAGCCGGGACT +
Preference number: 6 (lower is better)
Translates to: GCWSGSCPSAPG*MWNSGPTTAGT
Trigger: AGTCCCGGCTGTGGTGGGACCTGAATTCCACATCCAGCCGGGAGCAGATGGACAGCTTCCGCTCCAGCAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CAA 72 bp CCTTGGAACGCCAGCACCGTGACCTGGCTTAGGATCTaGCGGGCTGGCCTCCTCCTCACGGGGACACTGCTT +
Preference number: 6 (lower is better)
Translates to: PWNASTVTWLRI*RAGLLLTGTLL
Trigger: AAGCAGTGTCCCCGTGAGGAGGAGGCCAGCCCGCAAGATCCTAAGCCAGGTCACGGTGCTGGCGTTCCAAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CAA 90 bp AACGCGTCCCCTTGGAACGCCAGCACCGTGACCTGGCTTAGGATCTaGCGGGCTGGCCTCCTCCTCACGGGGACACTGCTTTCTGAGACA +
Preference number: 6 (lower is better)
Translates to: NASPWNASTVTWLRI*RAGLLLTGTLLSET
Trigger: TGTCTCAGAAAGCAGTGTCCCCGTGAGGAGGAGGCCAGCCCGCAAGATCCTAAGCCAGGTCACGGTGCTGGCGTTCCAAGGGGACGCGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 72 bp AGGGTCTGTTCCTTCTCCTCCCAGTACTGCTTCTGCTaGCTCTCCGCGGCCACTGCTCTCTCCCGCAGTGAG +
Preference number: 6 (lower is better)
Translates to: RVCSFSSQYCFC*LSAATALSRSE
Trigger: CTCACTGCGGGAGAGAGCAGTGGCCGCGGAGAGGCAGCAGAAGCAGTACTGGGAGGAGAAGGAACAGACCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 72 bp AGGCTGCAGTCACTGTCATCTGGTGGGCACACAGCATaGATCCGCACAAGCCTCTGCTTCCCCCGGAGGCAG +
Preference number: 6 (lower is better)
Translates to: RLQSLSSGGHTA*IRTSLCFPRRQ
Trigger: CTGCCTCCGGGGGAAGCAGAGGCTTGTGCGGATGCATGCTGTGTGCCCACCAGATGACAGTGACTGCAGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 72 bp GGATCTTGCGGGCTGGCCTCCTCCTCACGGGGACACTaGTTTCTGAGACATTCAGGCTCCGGGAAGACCCCT +
Preference number: 6 (lower is better)
Translates to: GSCGLASSSRGH*FLRHSGSGKTP
Trigger: AGGGGTCTTCCCGGAGCCTGAATGTCTCAGAAAGCAGTGTCCCCGTGAGGAGGAGGCCAGCCCGCAAGATCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CAA 72 bp TGGTCCTCCAGGAGGCTTGCGGGGGACTGTGCACCGTaGAGTCATGTCCTGGATGAGGGCCAGAAGCTGCTG +
Preference number: 6 (lower is better)
Translates to: WSSRRLAGDCAP*SHVLDEGQKLL
Trigger: CAGCAGCTTCTGGCCCTCATCCAGGACATGACTCAACGGTGCACAGTCCCCCGCAAGCCTCCTGGAGGACCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 72 bp TCTTCTGCTCATCTGCAATGGCCAGGCGCACACAGCTaGGCAGGCTGTCCAGATCACTCCAGCTGTCGGGGG +
Preference number: 6 (lower is better)
Translates to: SSAHLQWPGAHS*AGCPDHSSCRG
Trigger: CCCCCGACAGCTGGAGTGATCTGGACAGCCTGCTCAGCTGTGTGCGCCTGGCCATTGCAGATGAGCAGAAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 72 bp ACTCGGACGCTGTCCAGCCGCACATCCAGCAGGGCGTaGGTGCTCATATTCATGAGGGACTCCACAGCATGC +
Preference number: 6 (lower is better)
Translates to: TRTLSSRTSSRA*VLIFMRDSTAC
Trigger: GCATGCTGTGGAGTCCCTCATGAATATGAGCACCCACGCCCTGCTGGATGTGCGGCTGGACAGCGTCCGAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 72 bp AATTCAGGTCCCACCACAGCCGGGACTCTGTGGAGCTaGGGAGGCTGCAGTCACTGTCATCTGGTGGGCACA +
Preference number: 6 (lower is better)
Translates to: NSGPTTAGTLWS*GGCSHCHLVGT
Trigger: TGTGCCCACCAGATGACAGTGACTGCAGCCTCCTCAGCTCCACAGAGTCCCGGCTGTGGTGGGACCTGAATT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 72 bp CACCAGGGTGTACGGTGCCAGGGTGAAGCAGCTCTCTaGCCAGAAGCACACGCTAGGACCACCTTCCTCCTT +
Preference number: 6 (lower is better)
Translates to: HQGVRCQGEAAL*PEAHARTTFLL
Trigger: AAGGAGGAAGGTGGTCCTAGCGTGTGCTTCTGGTCAGAGAGCTGCTTCACCCTGGCACCGTACACCCTGGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 72 bp CCAACTCTCATGGCACTGTTGGTGAAACGGGAGCTATaGAGGATCTCCTCCTCGTCCAGCTGGCCCAGCACC +
Preference number: 6 (lower is better)
Translates to: PTLMALLVKREL*RISSSSSWPST
Trigger: GGTGCTGGGCCAGCTGGACGAGGAGGAGATCCTGCATAGCTCCCGTTTCACCAACAGTGCCATGAGAGTTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 72 bp CATGATCTGGGTACCAGGGCGCAGGGCCATCTCATCTaGTGCAGAGCCGGGGGTGACACGGTGAATGAAGAT +
Preference number: 6 (lower is better)
Translates to: HDLGTRAQGHLI*CRAGGDTVNED
Trigger: ATCTTCATTCACCGTGTCACCCCCGGCTCTGCAGCAGATGAGATGGCCCTGCGCCCTGGTACCCAGATCATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CAA 90 bp CGGGCCTTTAGCAGATCCAGCAAGTGCCCAACTCTCATGGCACTGTaGGTGAAACGGGAGCTATGCAGGATCTCCTCCTCGTCCAGCTGG +
Preference number: 6 (lower is better)
Translates to: RAFSRSSKCPTLMAL*VKRELCRISSSSSW
Trigger: CCAGCTGGACGAGGAGGAGATCCTGCATAGCTCCCGTTTCACCAACAGTGCCATGAGAGTTGGGCACTTGCTGGATCTGCTAAAGGCCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 72 bp GCCATCTCATCTGCTGCAGAGCCGGGGGTGACACGGTaGATGAAGATCCCAGTGAGGTTCCCACCGATGACA +
Preference number: 6 (lower is better)
Translates to: AISSAAEPGVTR*MKIPVRFPPMT
Trigger: TGTCATCGGTGGGAACCTCACTGGGATCTTCATTCACCGTGTCACCCCCGGCTCTGCAGCAGATGAGATGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 72 bp CAGGCGCTGAGAAATCTCCATCTGGGCCCTGTCCCTTaGTGTGTATGCCTGGTCACGTTCCTTCTGCAGCTC +
Preference number: 6 (lower is better)
Translates to: QALRNLHLGPVP*CVCLVTFLLQL
Trigger: GAGCTGCAGAAGGAACGTGACCAGGCATACACAGCAAGGGACAGGGCCCAGATGGAGATTTCTCAGCGCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 72 bp CCGATGACACCAATCTGTTCCAGCAACGCGTCCCCTTaGAACGCCAGCACCGTGACCTGGCTTAGGATCTTG +
Preference number: 6 (lower is better)
Translates to: PMTPICSSNASP*NASTVTWLRIL
Trigger: CAAGATCCTAAGCCAGGTCACGGTGCTGGCGTTCCAAGGGGACGCGTTGCTGGAACAGATTGGTGTCATCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CAA 72 bp AGGCTGCTGATGGCCCCAGCCAGACACTCGGTCAGCTaGGATGTCTCCATGAGACCGCTGAAAGTGCTGAAG +
Preference number: 6 (lower is better)
Translates to: RLLMAPARHSVS*DVSMRPLKVLK
Trigger: CTTCAGCACTTTCAGCGGTCTCATGGAGACATCCAAGCTGACCGAGTGTCTGGCTGGGGCCATCAGCAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CAA 72 bp CCAGGCGCTGAGAAATCTCCATCTGGGCCCTGTCCCTaGCTGTGTATGCCTGGTCACGTTCCTTCTGCAGCT +
Preference number: 6 (lower is better)
Translates to: PGAEKSPSGPCP*LCMPGHVPSAA
Trigger: AGCTGCAGAAGGAACGTGACCAGGCATACACAGCAAGGGACAGGGCCCAGATGGAGATTTCTCAGCGCCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 72 bp AGAAATCTCCATCTGGGCCCTGTCCCTTGCTGTGTATaGCTGGTCACGTTCCTTCTGCAGCTCAGCCACCTG +
Preference number: 6 (lower is better)
Translates to: RNLHLGPVPCCV*LVTFLLQLSHL
Trigger: CAGGTGGCTGAGCTGCAGAAGGAACGTGACCAGGCATACACAGCAAGGGACAGGGCCCAGATGGAGATTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 72 bp CAGGAGCCATTCACCCTCCTGAGAAGGCCCACAGCCTaGTCCAGCGTTGTATTCTCCAGAGTGGCCCTTAAT +
Preference number: 6 (lower is better)
Translates to: QEPFTLLRRPTA*SSVVFSRVALN
Trigger: ATTAAGGGCCACTCTGGAGAATACAACGCTGGAGCAGGCTGTGGGCCTTCTCAGGAGGGTGAATGGCTCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 72 bp ACCTCCAGGAACTGCTCCTCCGAGCTGCCAAGCCGATaGAGGCCCTTCCTGAGTTTCTTTGCTGTCTTCTCA +
Preference number: 6 (lower is better)
Translates to: TSRNCSSELPSR*RPFLSFFAVFS
Trigger: TGAGAAGACAGCAAAGAAACTCAGGAAGGGCCTGCATCGGCTTGGCAGCTCGGAGGAGCAGTTCCTGGAGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 72 bp AGCATCTCGTCCTTCAGTTTCAGGACCTCGTGGAAGTaGGTGCTGACCTCACGTTTCATGCGGCTGTGGTCG +
Preference number: 6 (lower is better)
Translates to: SISSFSFRTSWK*VLTSRFMRLWS
Trigger: CGACCACAGCCGCATGAAACGTGAGGTCAGCACCCACTTCCACGAGGTCCTGAAACTGAAGGACGAGATGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 72 bp GGGTTCACATGGTGGGCATGCCAGCAGCTGCGGCCTTaGAACATGGTGTCAGTGACATGCAGGATGTCATTG +
Preference number: 6 (lower is better)
Translates to: GFTWWACQQLRP*NMVSVTCRMSL
Trigger: CAATGACATCCTGCATGTCACTGACACCATGTTCCAAGGCCGCAGCTGCTGGCATGCCCACCATGTGAACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CAA 72 bp GGGGTTCACATGGTGGGCATGCCAGCAGCTGCGGCCTaGGAACATGGTGTCAGTGACATGCAGGATGTCATT +
Preference number: 6 (lower is better)
Translates to: GVHMVGMPAAAA*EHGVSDMQDVI
Trigger: AATGACATCCTGCATGTCACTGACACCATGTTCCAAGGCCGCAGCTGCTGGCATGCCCACCATGTGAACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CAA 90 bp CATGGTGTAGGGGTTCACATGGTGGGCATGCCAGCAGCTGCGGCCTaGGAACATGGTGTCAGTGACATGCAGGATGTCATTGCAGTGAGT +
Preference number: 6 (lower is better)
Translates to: HGVGVHMVGMPAAAA*EHGVSDMQDVIAVS
Trigger: ACTCACTGCAATGACATCCTGCATGTCACTGACACCATGTTCCAAGGCCGCAGCTGCTGGCATGCCCACCATGTGAACCCCTACACCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 72 bp GATCCAGCAAGTGCCCAACTCTCATGGCACTGTTGGTaGAACGGGAGCTATGCAGGATCTCCTCCTCGTCCA +
Preference number: 6 (lower is better)
Translates to: DPASAQLSWHCW*NGSYAGSPPRP
Trigger: TGGACGAGGAGGAGATCCTGCATAGCTCCCGTTTCACCAACAGTGCCATGAGAGTTGGGCACTTGCTGGATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 72 bp CCATTCTTCCCTCGGGCCTTTAGCAGATCCAGCAAGTaGCCAACTCTCATGGCACTGTTGGTGAAACGGGAG +
Preference number: 6 (lower is better)
Translates to: PFFPRAFSRSSK*PTLMALLVKRE
Trigger: CTCCCGTTTCACCAACAGTGCCATGAGAGTTGGGCACTTGCTGGATCTGCTAAAGGCCCGAGGGAAGAATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 72 bp AGGTTCAGCATCTCGTCCTTCAGTTTCAGGACCTCGTaGAAGTGGGTGCTGACCTCACGTTTCATGCGGCTG +
Preference number: 6 (lower is better)
Translates to: RFSISSFSFRTS*KWVLTSRFMRL
Trigger: CAGCCGCATGAAACGTGAGGTCAGCACCCACTTCCACGAGGTCCTGAAACTGAAGGACGAGATGCTGAACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 72 bp AATAGTTGGGGATGGTGCCAGGCTCCATGTCTTTCATaGTGTAGGGGTTCACATGGTGGGCATGCCAGCAGC +
Preference number: 6 (lower is better)
Translates to: NSWGWCQAPCLS*CRGSHGGHASS
Trigger: GCTGCTGGCATGCCCACCATGTGAACCCCTACACCATGAAAGACATGGAGCCTGGCACCATCCCCAACTATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 72 bp CCAGAAGCTGCTGCTGAGCCTGTGAATAGTTGGGGATaGTGCCAGGCTCCATGTCTTTCATGGTGTAGGGGT +
Preference number: 6 (lower is better)
Translates to: PEAAAEPVNSWG*CQAPCLSWCRG
Trigger: ACCCCTACACCATGAAAGACATGGAGCCTGGCACCATCCCCAACTATTCACAGGCTCAGCAGCAGCTTCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 72 bp GGACCACCTTCCTCCTTGCCAGAATCCCACTGGCTTTaGTCAAAGGATGAAGTCAGAGGACTGACAGCGGCT +
Preference number: 6 (lower is better)
Translates to: GPPSSLPESHWL*SKDEVRGLTAA
Trigger: AGCCGCTGTCAGTCCTCTGACTTCATCCTTTGACCAAAGCCAGTGGGATTCTGGCAAGGAGGAAGGTGGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CAA 72 bp AGCAGATCCAGCAAGTGCCCAACTCTCATGGCACTGTaGGTGAAACGGGAGCTATGCAGGATCTCCTCCTCG +
Preference number: 6 (lower is better)
Translates to: SRSSKCPTLMAL*VKRELCRISSS
Trigger: CGAGGAGGAGATCCTGCATAGCTCCCGTTTCACCAACAGTGCCATGAGAGTTGGGCACTTGCTGGATCTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 72 bp TCCAGGTCTGTGTCTGTGTCGTCCACTGTAGCCCCTTaGAGGCGCATCTCAAGGACTTCTGGGAAGCTTAGA +
Preference number: 6 (lower is better)
Translates to: SRSVSVSSTVAP*RRISRTSGKLR
Trigger: TCTAAGCTTCCCAGAAGTCCTTGAGATGCGCCTTCAAGGGGCTACAGTGGACGACACAGACACAGACCTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 72 bp AGACCCCTGCAGGCTGTCTTCTGTCTGAGAGAGGTCTaGTCCGTCAATCATCTCAAACTCCAGGTCTGTGTC +
Preference number: 6 (lower is better)
Translates to: RPLQAVFCLREV*SVNHLKLQVCV
Trigger: GACACAGACCTGGAGTTTGAGATGATTGACGGAGCAGACCTCTCTCAGACAGAAGACAGCCTGCAGGGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 72 bp CAGCTCCTTCTCTCTGAGTGCGTTGCTGTAGTGCAGTaGCAGGTTCAGCATCTCGTCCTTCAGTTTCAGGAC +
Preference number: 6 (lower is better)
Translates to: QLLLSECVAVVQ*QVQHLVLQFQD
Trigger: GTCCTGAAACTGAAGGACGAGATGCTGAACCTGTCACTGCACTACAGCAACGCACTCAGAGAGAAGGAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS TCA 72 bp CTCCTTGCCAGAATCCCACTGGCTTTGGTCAAAGGATaGAGTCAGAGGACTGACAGCGGCTTTGTCCACACT +
Preference number: 6 (lower is better)
Translates to: LLARIPLALVKG*SQRTDSGFVHT
Trigger: AGTGTGGACAAAGCCGCTGTCAGTCCTCTGACTTCATCCTTTGACCAAAGCCAGTGGGATTCTGGCAAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 72 bp CAGGGTTGTGGAACTTCAGGCTTTCCAGAAAGGCAATaGCTCCATTCTTCCCTCGGGCCTTTAGCAGATCCA +
Preference number: 6 (lower is better)
Translates to: QGCGTSGFPERQ*LHSSLGPLADP
Trigger: TGGATCTGCTAAAGGCCCGAGGGAAGAATGGAGCCATTGCCTTTCTGGAAAGCCTGAAGTTCCACAACCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 72 bp GCCGATTTAGTTCTTCTCCCTGAGGCTCCAGGTTGCTaGCCATCTTCAGGGACCTCTCTCGAGATTCTCTTT +
Preference number: 6 (lower is better)
Translates to: ADLVLLPEAPGC*PSSGTSLEILF
Trigger: AAAGAGAATCTCGAGAGAGGTCCCTGAAGATGGCCAGCAACCTGGAGCCTCAGGGAGAAGAACTAAATCGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CAA 72 bp TCTGACCAGAAGCACACGCTAGGACCACCTTCCTCCTaGCCAGAATCCCACTGGCTTTGGTCAAAGGATGAA +
Preference number: 6 (lower is better)
Translates to: SDQKHTLGPPSS*PESHWLWSKDE
Trigger: TTCATCCTTTGACCAAAGCCAGTGGGATTCTGGCAAGGAGGAAGGTGGTCCTAGCGTGTGCTTCTGGTCAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CAA 90 bp CACTGGCTTTGGTCAAAGGATGAAGTCAGAGGACTGACAGCGGCTTaGTCCACACTGACAATTCGTACTAACTTCTGTGGTCCTCCAGGA +
Preference number: 6 (lower is better)
Translates to: HWLWSKDEVRGLTAA*STLTIRTNFCGPPG
Trigger: TCCTGGAGGACCACAGAAGTTAGTACGAATTGTCAGTGTGGACAAAGCCGCTGTCAGTCCTCTGACTTCATCCTTTGACCAAAGCCAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CAA 72 bp TCTCTCGAGATTCTCTTTCACATGACGATACAAGGCTaGCTCGCTGGAGTTCCTGCTTCACCAGGTAGAGCT +
Preference number: 6 (lower is better)
Translates to: SLEILFHMTIQG*LAGVPASPGRA
Trigger: AGCTCTACCTGGTGAAGCAGGAACTCCAGCGAGCAAGCCTTGTATCGTCATGTGAAAGAGAATCTCGAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS GCA 72 bp GCTGCCAAGCCGATGCAGGCCCTTCCTGAGTTTCTTTaGTGTCTTCTCATTGACAGAGACATGGATGATAAT +
Preference number: 6 (lower is better)
Translates to: AAKPMQALPEFL*CLLIDRDMDDN
Trigger: ATTATCATCCATGTCTCTGTCAATGAGAAGACAGCAAAGAAACTCAGGAAGGGCCTGCATCGGCTTGGCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CAA 90 bp CCAAGCCGATGCAGGCCCTTCCTGAGTTTCTTTGCTGTCTTCTCATaGACAGAGACATGGATGATAATGGGAAACATGTCCATCCTATGT +
Preference number: 6 (lower is better)
Translates to: PSRCRPFLSFFAVFS*TETWMIMGNMSILC
Trigger: ACATAGGATGGACATGTTTCCCATTATCATCCATGTCTCTGTCAATGAGAAGACAGCAAAGAAACTCAGGAAGGGCCTGCATCGGCTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8
CDS CCA 72 bp CTGAGTTTCTTTGCTGTCTTCTCATTGACAGAGACATaGATGATAATGGGAAACATGTCCATCCTATGTAGG +
Preference number: 6 (lower is better)
Translates to: LSFFAVFSLTET*MIMGNMSILCR
Trigger: CCTACATAGGATGGACATGTTTCCCATTATCATCCATGTCTCTGTCAATGAGAAGACAGCAAAGAAACTCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000053245.7
ENSMUST00000106250.8