RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CAR8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041261

Ensembl transcript IDs: ENSMUST00000066674.8

Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCTGTATCCCACTTCCCTCAGGACAATGGCTCTAGTTTTCCTTCCTaGCCAAGACTCTATGTTGAACTTCCTTTGCTTCTGTTTTCAGGG +
Preference number: 1 (lower is better)
Translates to: PVSHFPQDNGSSFPS*PRLYVELPLLLFSG
Trigger: CCCTGAAAACAGAAGCAAAGGAAGTTCAACATAGAGTCTTGGGCAGGAAGGAAAACTAGAGCCATTGTCCTGAGGGAAGTGGGATACAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR TCA 90 bp CTACTTCTCTCTGAACTCTGCCTAGCTCATTCAACTCAGCTGTTCTaGCTCAAACTCCTCTCCAAAGTGACTAATTCAAGACGGGATTCT +
Preference number: 1 (lower is better)
Translates to: LLLSELCLAHSTQLF*LKLLSKVTNSRRDS
Trigger: AGAATCCCGTCTTGAATTAGTCACTTTGGAGAGGAGTTTGAGTCAGAACAGCTGAGTTGAATGAGCTAGGCAGAGTTCAGAGAGAAGTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR GCA 90 bp TGCTTGGAAAAACTGCCTCTTGAATTTCCCCAAACTGAACTGTATTaGCGGCAGGAACTGAATGGAACTAAGCAGAACTGCACAAACTCA +
Preference number: 1 (lower is better)
Translates to: CLEKLPLEFPQTELY*RQELNGTKQNCTNS
Trigger: TGAGTTTGTGCAGTTCTGCTTAGTTCCATTCAGTTCCTGCCGGCAATACAGTTCAGTTTGGGGAAATTCAAGAGGCAGTTTTTCCAAGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR CCA 90 bp AATTCAAGACGGGATTCTCTTGGCTTCTCTCTGAATTGCTCTGCTTaGAAAAACTGCCTCTTGAATTTCCCCAAACTGAACTGTATTGCC +
Preference number: 1 (lower is better)
Translates to: NSRRDSLGFSLNCSA*KNCLLNFPKLNCIA
Trigger: GGCAATACAGTTCAGTTTGGGGAAATTCAAGAGGCAGTTTTTCCAAGCAGAGCAATTCAGAGAGAAGCCAAGAGAATCCCGTCTTGAATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR-3UTR CCA 90 bp AGAGGCAGGATGCAGGCACTCTCTCTGTCATCAGAGACCCTGCGTGTGGCTGTTCATCAAAGGACTCCGTaGGACCACTGTCTTCTTCAC +
Preference number: 2 (lower is better)
Translates to: RGRMQALSLSSETLRVAVHQRTP*DHCLLH
Trigger: GTGAAGAAGACAGTGGTCCCACGGAGTCCTTTGATG...AACAGCCACACGCAGGGTCTCTGATGACAGAGAGAGTGCCTGCATCCTGCCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR-3UTR GCA 90 bp AGAGGCAGGATGCAGGCACTCTCTCTGTCATCAGAGACCCTGCGTGTGGCTGTTAGAAGCTGTGGTGTGTaGACACACACACTGTGTTTC +
Preference number: 2 (lower is better)
Translates to: RGRMQALSLSSETLRVAVRSCGV*THTLCF
Trigger: GAAACACAGTGTGTGTGTGCACACACCACAGCTTCT...AACAGCCACACGCAGGGTCTCTGATGACAGAGAGAGTGCCTGCATCCTGCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR CAA 90 bp CAGGCACTCTCTCTGTCATCAGAGACCCTGCGTGTGGCTGTTCTGTaGTGTTCCAGGGATACTGAATCTTCCTGTATCCCACTTCCCTCA +
Preference number: 2 (lower is better)
Translates to: QALSLSSETLRVAVL*CSRDTESSCIPLPS
Trigger: TGAGGGAAGTGGGATACAGGAAGATTCAGTATCCCTGGAACACAACAGAACAGCCACACGCAGGGTCTCTGATGACAGAGAGAGTGCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR-3UTR CCA 90 bp AGAGGCAGGATGCAGGCACTCTCTCTGTCATCAGAGACCCTGCGTGTGGCTGTTAAACAAAGCTATTACTaGTATGCTGTCCCCATCTTT +
Preference number: 2 (lower is better)
Translates to: RGRMQALSLSSETLRVAVKQSYY*YAVPIF
Trigger: AAAGATGGGGACAGCATACCAGTAATAGCTTTGTTT...AACAGCCACACGCAGGGTCTCTGATGACAGAGAGAGTGCCTGCATCCTGCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR-3UTR TCA 90 bp GTATCCCACTTCCCTCAGGACAATGGCTCTAGTTTTCCTTCCTGCCCAAGACTCTCTGTCACATTGAACTaGGATATGACTGAAGATGAG +
Preference number: 2 (lower is better)
Translates to: VSHFPQDNGSSFPSCPRLSVTLN*DMTEDE
Trigger: CTCATCTTCAGTCATATCTCAGTTCAATGTGACAGA...GAGTCTTGGGCAGGAAGGAAAACTAGAGCCATTGTCCTGAGGGAAGTGGGATAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR-3UTR CCA 90 bp GTATCCCACTTCCCTCAGGACAATGGCTCTAGTTTTCCTTCCTGCCCAAGACTCCTGAAAAGAAGGGTATaGTTGACCCTTATCTTATCC +
Preference number: 2 (lower is better)
Translates to: VSHFPQDNGSSFPSCPRLLKRRV*LTLILS
Trigger: GGATAAGATAAGGGTCAACCATACCCTTCTTTTCAG...GAGTCTTGGGCAGGAAGGAAAACTAGAGCCATTGTCCTGAGGGAAGTGGGATAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR-3UTR TCA 90 bp AAGTACCTTTTATTCACCAGATGTAACTGTCATCTCGGAGCCTTATTGCTGAATGTAACTGACACCCCATaGCGGCCTTTCAGTCTAGTC +
Preference number: 2 (lower is better)
Translates to: KYLLFTRCNCHLGALLLNVTDTP*RPFSLV
Trigger: GACTAGACTGAAAGGCCGTCATGGGGTGTCAGTTAC...ATTCAGCAATAAGGCTCCGAGATGACAGTTACATCTGGTGAATAAAAGGTACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR-3UTR GCA 90 bp TATCCCACTTCCCTCAGGACAATGGCTCTAGTTTTCCTTCCTGCCCAAGACTCTGCAACAAGCAGTATGTaGAAAAGTATGAATTCCAGA +
Preference number: 2 (lower is better)
Translates to: YPTSLRTMALVFLPAQDSATSSM*KSMNSR
Trigger: TCTGGAATTCATACTTTTGCACATACTGCTTGTTGC...AGAGTCTTGGGCAGGAAGGAAAACTAGAGCCATTGTCCTGAGGGAAGTGGGATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR-3UTR GCA 90 bp TATAGGTGTGGATTGCCCAGACCAAGAAAGTCTTTCAATATGATTTCTTTCCAGTGTCATCAGAGACCCTaGGTGTGGCTGTTCTGTTGT +
Preference number: 2 (lower is better)
Translates to: YRCGLPRPRKSFNMISFQCHQRP*VWLFCC
Trigger: ACAACAGAACAGCCACACGCAGGGTCTCTGATGACA...CTGGAAAGAAATCATATTGAAAGACTTTCTTGGTCTGGGCAATCCACACCTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR-3UTR TCA 90 bp TTAGCAAATACTAAAAACTTCAAAGAGGCAGGATGCAGGCACTCTCTCTGTCATAAGATAATGCAGGCTTaGGGGTTAAAACAAAGCTGC +
Preference number: 2 (lower is better)
Translates to: LANTKNFKEAGCRHSLCHKIMQA*GLKQSC
Trigger: GCAGCTTTGTTTTAACCCTCAAGCCTGCATTATCTT...ATGACAGAGAGAGTGCCTGCATCCTGCCTCTTTGAAGTTTTTAGTATTTGCTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR-3UTR GCA 90 bp AAGTACCTTTTATTCACCAGATGTAACTGTCATCTCGGAGCCTTATTGCTGAATAAGCTATTACTGGTATaGTGTCCCCATCTTTCCTCC +
Preference number: 2 (lower is better)
Translates to: KYLLFTRCNCHLGALLLNKLLLV*CPHLSS
Trigger: GGAGGAAAGATGGGGACAGCATACCAGTAATAGCTT...ATTCAGCAATAAGGCTCCGAGATGACAGTTACATCTGGTGAATAAAAGGTACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR-3UTR TCA 90 bp CAGGAAATAAATGACTTGGCTCTGGGAATGTGCTTTTCTTATCTCATATTGATACACTGTCTTCTTCACTaGTGCAGATGGGTTTGTTCC +
Preference number: 2 (lower is better)
Translates to: QEINDLALGMCFSYLILIHCLLH*CRWVCS
Trigger: GGAACAAACCCATCTGCATCAGTGAAGAAGACAGTG...TATCAATATGAGATAAGAAAAGCACATTCCCAGAGCCAAGTCATTTATTTCCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR-3UTR TCA 90 bp AAGTACCTTTTATTCACCAGATGTAACTGTCATCTCGGAGCCTTATTGCTGAATCCCAAGACTCTATGTTaGACTTCCTTTGCTTCTGTT +
Preference number: 2 (lower is better)
Translates to: KYLLFTRCNCHLGALLLNPKTLC*TSFASV
Trigger: AACAGAAGCAAAGGAAGTTCAACATAGAGTCTTGGG...ATTCAGCAATAAGGCTCCGAGATGACAGTTACATCTGGTGAATAAAAGGTACTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR-3UTR TCA 90 bp AAGTACCTTTTATTCACCAGATGTAACTGTCATCTCGGAGCCTTATTGCTGAATGGGGTATCCTACATCTaGTTTGTTCTGCCAAATCTT +
Preference number: 2 (lower is better)
Translates to: KYLLFTRCNCHLGALLLNGVSYI*FVLPNL
Trigger: AAGATTTGGCAGAACAAATCAGATGTAGGATACCCC...ATTCAGCAATAAGGCTCCGAGATGACAGTTACATCTGGTGAATAAAAGGTACTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR-3UTR TCA 90 bp AAGTACCTTTTATTCACCAGATGTAACTGTCATCTCGGAGCCTTATTGCTGAATAACTCCTCTCCAAAGTaGCTAATTCAAGACGGGATT +
Preference number: 2 (lower is better)
Translates to: KYLLFTRCNCHLGALLLNNSSPK*LIQDGI
Trigger: AATCCCGTCTTGAATTAGTCACTTTGGAGAGGAGTT...ATTCAGCAATAAGGCTCCGAGATGACAGTTACATCTGGTGAATAAAAGGTACTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR-3UTR GCA 90 bp TTAGCAAATACTAAAAACTTCAAAGAGGCAGGATGCAGGCACTCTCTCTGTCATTCTAGTTTTCCTTCCTaGCCAAGACTCTATGTTGAA +
Preference number: 2 (lower is better)
Translates to: LANTKNFKEAGCRHSLCHSSFPS*PRLYVE
Trigger: TTCAACATAGAGTCTTGGGCAGGAAGGAAAACTAGA...ATGACAGAGAGAGTGCCTGCATCCTGCCTCTTTGAAGTTTTTAGTATTTGCTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR-3UTR TCA 90 bp GTATTGTTTCCCTTTACCAACAGATCTAAAACCTCTAAATCGGTGCTTATTCTACAGACAGGAAATAAATaGCTTGGCTCTGGGAATGTG +
Preference number: 2 (lower is better)
Translates to: VLFPFTNRSKTSKSVLILQTGNK*LGSGNV
Trigger: CACATTCCCAGAGCCAAGTCATTTATTTCCTGTCTG...TAGAATAAGCACCGATTTAGAGGTTTTAGATCTGTTGGTAAAGGGAAACAATAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR-3UTR GCA 90 bp TATAGGTGTGGATTGCCCAGACCAAGAAAGTCTTTCAATATGATTTCTTTCCAGTTGGCTCTGGGAATGTaGTTTTCTTATCTCATATTG +
Preference number: 2 (lower is better)
Translates to: YRCGLPRPRKSFNMISFQLALGM*FSYLIL
Trigger: CAATATGAGATAAGAAAAGCACATTCCCAGAGCCAA...CTGGAAAGAAATCATATTGAAAGACTTTCTTGGTCTGGGCAATCCACACCTATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR-3UTR CCA 90 bp GTATTGTTTCCCTTTACCAACAGATCTAAAACCTCTAAATCGGTGCTTATTCTACATGTATACAGACAATaGTCACAGATATCCATCAAC +
Preference number: 2 (lower is better)
Translates to: VLFPFTNRSKTSKSVLILHVYRQ*SQISIN
Trigger: GTTGATGGATATCTGTGACCATTGTCTGTATACATG...TAGAATAAGCACCGATTTAGAGGTTTTAGATCTGTTGGTAAAGGGAAACAATAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR TCA 72 bp CCTGCGTGTGGCTGTTCTGTTGTGTTCCAGGGATACTaGATCTTCCTGTATCCCACTTCCCTCAGGACAATG +
Preference number: 3 (lower is better)
Translates to: PACGCSVVFQGY*IFLYPTSLRTM
Trigger: CATTGTCCTGAGGGAAGTGGGATACAGGAAGATTCAGTATCCCTGGAACACAACAGAACAGCCACACGCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR CCA 72 bp TGCAGGCACTCTCTCTGTCATCAGAGACCCTGCGTGTaGCTGTTCTGTTGTGTTCCAGGGATACTGAATCTT +
Preference number: 3 (lower is better)
Translates to: CRHSLCHQRPCV*LFCCVPGILNL
Trigger: AAGATTCAGTATCCCTGGAACACAACAGAACAGCCACACGCAGGGTCTCTGATGACAGAGAGAGTGCCTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR GCA 72 bp CACTTCCCTCAGGACAATGGCTCTAGTTTTCCTTCCTaGCCAAGACTCTATGTTGAACTTCCTTTGCTTCTG +
Preference number: 3 (lower is better)
Translates to: HFPQDNGSSFPS*PRLYVELPLLL
Trigger: CAGAAGCAAAGGAAGTTCAACATAGAGTCTTGGGCAGGAAGGAAAACTAGAGCCATTGTCCTGAGGGAAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR GCA 72 bp TATTGCCGGCAGGAACTGAATGGAACTAAGCAGAACTaGACAAACTCAACTGAACTCAACGGCATTCATCTC +
Preference number: 3 (lower is better)
Translates to: YCRQELNGTKQN*TNSTELNGIHL
Trigger: GAGATGAATGCCGTTGAGTTCAGTTGAGTTTGTGCAGTTCTGCTTAGTTCCATTCAGTTCCTGCCGGCAATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR GCA 72 bp AAACTGCCTCTTGAATTTCCCCAAACTGAACTGTATTaGCGGCAGGAACTGAATGGAACTAAGCAGAACTGC +
Preference number: 3 (lower is better)
Translates to: KLPLEFPQTELY*RQELNGTKQNC
Trigger: GCAGTTCTGCTTAGTTCCATTCAGTTCCTGCCGGCAATACAGTTCAGTTTGGGGAAATTCAAGAGGCAGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR TCA 72 bp AATTTCCCCAAACTGAACTGTATTGCCGGCAGGAACTaGATGGAACTAAGCAGAACTGCACAAACTCAACTG +
Preference number: 3 (lower is better)
Translates to: NFPKLNCIAGRN*MELSRTAQTQL
Trigger: CAGTTGAGTTTGTGCAGTTCTGCTTAGTTCCATTCAGTTCCTGCCGGCAATACAGTTCAGTTTGGGGAAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR GCA 72 bp ATTTTAGCAAATACTAAAAACTTCAAAGAGGCAGGATaGAGGCACTCTCTCTGTCATCAGAGACCCTGCGTG +
Preference number: 3 (lower is better)
Translates to: ILANTKNFKEAG*RHSLCHQRPCV
Trigger: CACGCAGGGTCTCTGATGACAGAGAGAGTGCCTGCATCCTGCCTCTTTGAAGTTTTTAGTATTTGCTAAAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR GCA 72 bp AAGACGGGATTCTCTTGGCTTCTCTCTGAATTGCTCTaGTTGGAAAAACTGCCTCTTGAATTTCCCCAAACT +
Preference number: 3 (lower is better)
Translates to: KTGFSWLLSELL*LEKLPLEFPQT
Trigger: AGTTTGGGGAAATTCAAGAGGCAGTTTTTCCAAGCAGAGCAATTCAGAGAGAAGCCAAGAGAATCCCGTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR TCA 72 bp TCTCCTGTGCTCCTTAGAGTTGGGGTATCCTACATCTaGTTTGTTCTGCCAAATCTTTCTCTGATTTGTAAC +
Preference number: 3 (lower is better)
Translates to: SPVLLRVGVSYI*FVLPNLSLICN
Trigger: GTTACAAATCAGAGAAAGATTTGGCAGAACAAATCAGATGTAGGATACCCCAACTCTAAGGAGCACAGGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR-3UTR CAA 90 bp AAGTACCTTTTATTCACCAGATGTAACTGTCATCTCGGAGCCTTATTGCTGAATGCCCAAGACTCTATGTaGAACTTCCTTTGCTTCTGT +
Preference number: 3 (lower is better)
Translates to: KYLLFTRCNCHLGALLLNAQDSM*NFLCFC
Trigger: ACAGAAGCAAAGGAAGTTCAACATAGAGTCTTGGGC...ATTCAGCAATAAGGCTCCGAGATGACAGTTACATCTGGTGAATAAAAGGTACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR TCA 72 bp TCACCAGATGTAACTGTCATCTCGGAGCCTTATTGCTaGATAAATCACCTTTTCTACTTCTCTCTGAACTCT +
Preference number: 3 (lower is better)
Translates to: SPDVTVISEPYC*INHLFYFSLNS
Trigger: AGAGTTCAGAGAGAAGTAGAAAAGGTGATTTATTCAGCAATAAGGCTCCGAGATGACAGTTACATCTGGTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR GCA 72 bp GTCTTTCAATATGATTTCTTTCCAGAACAGCCACGTTaGTGGATTAAAATTGCTCTACAAAATTCACCATGG +
Preference number: 3 (lower is better)
Translates to: VFQYDFFPEQPR*WIKIALQNSPW
Trigger: CCATGGTGAATTTTGTAGAGCAATTTTAATCCAGCAACGTGGCTGTTCTGGAAAGAAATCATATTGAAAGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR CCA 72 bp TTTCAATATGATTTCTTTCCAGAACAGCCACGTTGCTaGATTAAAATTGCTCTACAAAATTCACCATGGATA +
Preference number: 3 (lower is better)
Translates to: FQYDFFPEQPRC*IKIALQNSPWI
Trigger: TATCCATGGTGAATTTTGTAGAGCAATTTTAATCCAGCAACGTGGCTGTTCTGGAAAGAAATCATATTGAAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR TCA 90 bp GTATCCCACTTCCCTCAGGACAATGGCTCTAGTTTTCCTTCCTGCCCAAGACTCGCGGACATCCAGCAGTaGGGGGTCATACCTGGCTTC +
Preference number: 4 (lower is better)
Translates to: VSHFPQDNGSSFPSCPRLADIQQ*GVIPGF
Trigger: GAAGCCAGGTATGACCCCTCACTGCTGGATGTCCGC...GAGTCTTGGGCAGGAAGGAAAACTAGAGCCATTGTCCTGAGGGAAGTGGGATAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR GCA 90 bp AGAGGCAGGATGCAGGCACTCTCTCTGTCATCAGAGACCCTGCGTGTGGCTGTTCCGCCTCATCGATGCTaGCAAACAGTGTGGAATTCC +
Preference number: 4 (lower is better)
Translates to: RGRMQALSLSSETLRVAVPPHRC*QTVWNS
Trigger: GGAATTCCACACTGTTTGGCAGCATCGATGAGGCGG...AACAGCCACACGCAGGGTCTCTGATGACAGAGAGAGTGCCTGCATCCTGCCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR CCA 90 bp AGAGGCAGGATGCAGGCACTCTCTCTGTCATCAGAGACCCTGCGTGTGGCTGTTAGGTTGATAGGTGACTaGTACTCCCCATTAGCATCA +
Preference number: 4 (lower is better)
Translates to: RGRMQALSLSSETLRVAVRLIGD*YSPLAS
Trigger: TGATGCTAATGGGGAGTACCAGTCACCTATCAACCT...AACAGCCACACGCAGGGTCTCTGATGACAGAGAGAGTGCCTGCATCCTGCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR GCA 90 bp AGACATAGACCTCTCTGCATGACTGTGTCCCAAGCACTGTACTACCAAAGTATCGCCCTCCACCAGTTCTaGCCCCTTGACATGTGTCCT +
Preference number: 4 (lower is better)
Translates to: RHRPLCMTVSQALYYQSIALHQF*PLDMCP
Trigger: AGGACACATGTCAAGGGGGCAGAACTGGTGGAGGGC...GATACTTTGGTAGTACAGTGCTTGGGACACAGTCATGCAGAGAGGTCTATGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR GCA 90 bp TATCCCACTTCCCTCAGGACAATGGCTCTAGTTTTCCTTCCTGCCCAAGACTCTCAACCGCCTCATCGATaGTGCCAAACAGTGTGGAAT +
Preference number: 4 (lower is better)
Translates to: YPTSLRTMALVFLPAQDSQPPHR*CQTVWN
Trigger: ATTCCACACTGTTTGGCAGCATCGATGAGGCGGTTG...AGAGTCTTGGGCAGGAAGGAAAACTAGAGCCATTGTCCTGAGGGAAGTGGGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR CCA 90 bp TCTGCTTGGAAAAACTGCCTCTTGAATTTCCCCAAACTGAACTGTATTGCCGGCGTGAGGGGTCATACCTaGCTTCTCTGGAGTTTAGGT +
Preference number: 4 (lower is better)
Translates to: SAWKNCLLNFPKLNCIAGVRGHT*LLWSLG
Trigger: ACCTAAACTCCAGAGAAGCCAGGTATGACCCCTCAC...GCCGGCAATACAGTTCAGTTTGGGGAAATTCAAGAGGCAGTTTTTCCAAGCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR TCA 90 bp TATAGGTGTGGATTGCCCAGACCAAGAAAGTCTTTCAATATGATTTCTTTCCAGCCAGTTCTGCCCCCTTaGCATGTGTCCTCAGCCTTC +
Preference number: 4 (lower is better)
Translates to: YRCGLPRPRKSFNMISFQPVLPP*HVSSAF
Trigger: GAAGGCTGAGGACACATGTCAAGGGGGCAGAACTGG...CTGGAAAGAAATCATATTGAAAGACTTTCTTGGTCTGGGCAATCCACACCTATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR CCA 90 bp AGACATAGACCTCTCTGCATGACTGTGTCCCAAGCACTGTACTACCAAAGTATCTGCTGCCAAACAGTGTaGAATTCCAGTGGATCAGGT +
Preference number: 4 (lower is better)
Translates to: RHRPLCMTVSQALYYQSICCQTV*NSSGSG
Trigger: ACCTGATCCACTGGAATTCCACACTGTTTGGCAGCA...GATACTTTGGTAGTACAGTGCTTGGGACACAGTCATGCAGAGAGGTCTATGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR CCA 90 bp TTAGCAAATACTAAAAACTTCAAAGAGGCAGGATGCAGGCACTCTCTCTGTCATATGATGGCGATACCATaGGGCTTCCCAACCGCCTCA +
Preference number: 4 (lower is better)
Translates to: LANTKNFKEAGCRHSLCHMMAIP*GFPTAS
Trigger: TGAGGCGGTTGGGAAGCCCCATGGTATCGCCATCAT...ATGACAGAGAGAGTGCCTGCATCCTGCCTCTTTGAAGTTTTTAGTATTTGCTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR TCA 90 bp TTTAGTTGCTTCCTTCTGCAAACTAACATTGCCTACATTGTTTCAGATTCAGGATCAAACTCCTGTCCCTaGGGCAGTGGTCCTCCTGAC +
Preference number: 4 (lower is better)
Translates to: FSCFLLQTNIAYIVSDSGSNSCP*GSGPPD
Trigger: GTCAGGAGGACCACTGCCTCAGGGACAGGAGTTTGA...TCCTGAATCTGAAACAATGTAGGCAATGTTAGTTTGCAGAAGGAAGCAACTAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR GCA 90 bp AAGTACCTTTTATTCACCAGATGTAACTGTCATCTCGGAGCCTTATTGCTGAATCTCGGGGAAGGCGACTaGATCCTCAATGAAGCTCAG +
Preference number: 4 (lower is better)
Translates to: KYLLFTRCNCHLGALLLNLGEGD*ILNEAQ
Trigger: CTGAGCTTCATTGAGGATGCAGTCGCCTTCCCCGAG...ATTCAGCAATAAGGCTCCGAGATGACAGTTACATCTGGTGAATAAAAGGTACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR CCA 90 bp TTAGCAAATACTAAAAACTTCAAAGAGGCAGGATGCAGGCACTCTCTCTGTCATTTCCAGTGGATCAGGTaGAGCTCCATGGGAAAGGCT +
Preference number: 4 (lower is better)
Translates to: LANTKNFKEAGCRHSLCHFQWIR*SSMGKA
Trigger: AGCCTTTCCCATGGAGCTCCACCTGATCCACTGGAA...ATGACAGAGAGAGTGCCTGCATCCTGCCTCTTTGAAGTTTTTAGTATTTGCTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR CAA 72 bp TCCATCAACACTGCAGTAACTGAAGATAATGCAGGCTaGAGGGTTAAAACAAAGCTGCCACTCAGGAGTTTC +
Preference number: 4 (lower is better)
Translates to: SINTAVTEDNAG*RVKTKLPLRSF
Trigger: GAAACTCCTGAGTGGCAGCTTTGTTTTAACCCTCAAGCCTGCATTATCTTCAGTTACTGCAGTGTTGATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
3UTR CAA 72 bp ACGGGATTCTCTTGGCTTCTCTCTGAATTGCTCTGCTaGGAAAAACTGCCTCTTGAATTTCCCCAAACTGAA +
Preference number: 4 (lower is better)
Translates to: TGFSWLLSELLC*EKLPLEFPQTE
Trigger: TTCAGTTTGGGGAAATTCAAGAGGCAGTTTTTCCAAGCAGAGCAATTCAGAGAGAAGCCAAGAGAATCCCGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR TCA 90 bp TTAGCAAATACTAAAAACTTCAAAGAGGCAGGATGCAGGCACTCTCTCTGTCATGACTTCAGGATGACTTaGATGGTGTGTCCATCGTTG +
Preference number: 4 (lower is better)
Translates to: LANTKNFKEAGCRHSLCHDFRMT*MVCPSL
Trigger: CAACGATGGACACACCATTCAAGTCATCCTGAAGTC...ATGACAGAGAGAGTGCCTGCATCCTGCCTCTTTGAAGTTTTTAGTATTTGCTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR CCA 90 bp TTTAGTTGCTTCCTTCTGCAAACTAACATTGCCTACATTGTTTCAGATTCAGGAGCACACCACATAATTTaGAGACAGGCGGACATCCAG +
Preference number: 4 (lower is better)
Translates to: FSCFLLQTNIAYIVSDSGAHHII*RQADIQ
Trigger: CTGGATGTCCGCCTGTCTCCAAATTATGTGGTGTGC...TCCTGAATCTGAAACAATGTAGGCAATGTTAGTTTGCAGAAGGAAGCAACTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR GCA 90 bp TATAGGTGTGGATTGCCCAGACCAAGAAAGTCTTTCAATATGATTTCTTTCCAGTTGAAATTGACCGTGTaGTCAGAACCACGCTGGTTT +
Preference number: 4 (lower is better)
Translates to: YRCGLPRPRKSFNMISFQLKLTV*SEPRWF
Trigger: AAACCAGCGTGGTTCTGAGCACACGGTCAATTTCAA...CTGGAAAGAAATCATATTGAAAGACTTTCTTGGTCTGGGCAATCCACACCTATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR TCA 90 bp AAGTACCTTTTATTCACCAGATGTAACTGTCATCTCGGAGCCTTATTGCTGAATGATTTTCCCTTATATTaGATATCCTGGAGGATCTCA +
Preference number: 4 (lower is better)
Translates to: KYLLFTRCNCHLGALLLNDFPLY*ISWRIS
Trigger: TGAGATCCTCCAGGATATTCAATATAAGGGAAAATC...ATTCAGCAATAAGGCTCCGAGATGACAGTTACATCTGGTGAATAAAAGGTACTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR TCA 90 bp CAGGAAATAAATGACTTGGCTCTGGGAATGTGCTTTTCTTATCTCATATTGATAATTTTGACTTCAGGATaGCTTGAATGGTGTGTCCAT +
Preference number: 4 (lower is better)
Translates to: QEINDLALGMCFSYLILIILTSG*LEWCVH
Trigger: ATGGACACACCATTCAAGTCATCCTGAAGTCAAAAT...TATCAATATGAGATAAGAAAAGCACATTCCCAGAGCCAAGTCATTTATTTCCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS TCA 90 bp TGTCTCCCAAAATCCCATCGCAGCCCTCCACCAGTTCTGCCCCCTTaGCATGTGTCCTCAGCCTTCGAAATTCTTCTATCTGCATCTGGG +
Preference number: 5 (lower is better)
Translates to: CLPKSHRSPPPVLPP*HVSSAFEILLSASG
Trigger: CCCAGATGCAGATAGAAGAATTTCGAAGGCTGAGGACACATGTCAAGGGGGCAGAACTGGTGGAGGGCTGCGATGGGATTTTGGGAGACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR CAA 90 bp AGAGGCAGGATGCAGGCACTCTCTCTGTCATCAGAGACCCTGCGTGTGGCTGTTTCCATGGGAAAGGCTTaGAAATTGACCGTGTGCTCA +
Preference number: 5 (lower is better)
Translates to: RGRMQALSLSSETLRVAVSMGKA*KLTVCS
Trigger: TGAGCACACGGTCAATTTCAAAGCCTTTCCCATGGA...AACAGCCACACGCAGGGTCTCTGATGACAGAGAGAGTGCCTGCATCCTGCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS TCA 90 bp GGCAGTGGTCCTCCTGACAAGACTGATTTTGACTTCAGGATGACTTaGATGGTGTGTCCATCGTTGGTGACTTCACAGTCCCGGCACACC +
Preference number: 5 (lower is better)
Translates to: GSGPPDKTDFDFRMT*MVCPSLVTSQSRHT
Trigger: GGTGTGCCGGGACTGTGAAGTCACCAACGATGGACACACCATTCAAGTCATCCTGAAGTCAAAATCAGTCTTGTCAGGAGGACCACTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS TCA 90 bp CCTTCAAGCCAACATGTTCCTTCCCGATCTGAACAAATAGTGCAATaGTGGCGATACCATGGGGCTTCCCAACCGCCTCATCGATGCTGC +
Preference number: 5 (lower is better)
Translates to: PSSQHVPSRSEQIVQ*WRYHGASQPPHRCC
Trigger: GCAGCATCGATGAGGCGGTTGGGAAGCCCCATGGTATCGCCATCATTGCACTATTTGTTCAGATCGGGAAGGAACATGTTGGCTTGAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS GCA 90 bp TCGGAAATTGTCTCCCAAAATCCCATCGCAGCCCTCCACCAGTTCTaGCCCCTTGACATGTGTCCTCAGCCTTCGAAATTCTTCTATCTG +
Preference number: 5 (lower is better)
Translates to: SEIVSQNPIAALHQF*PLDMCPQPSKFFYL
Trigger: CAGATAGAAGAATTTCGAAGGCTGAGGACACATGTCAAGGGGGCAGAACTGGTGGAGGGCTGCGATGGGATTTTGGGAGACAATTTCCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR CAA 90 bp TCTGCTTGGAAAAACTGCCTCTTGAATTTCCCCAAACTGAACTGTATTGCCGGCGGCACACCACATAATTaGGAGACAGGCGGACATCCA +
Preference number: 5 (lower is better)
Translates to: SAWKNCLLNFPKLNCIAGGTPHN*ETGGHP
Trigger: TGGATGTCCGCCTGTCTCCAAATTATGTGGTGTGCC...GCCGGCAATACAGTTCAGTTTGGGGAAATTCAAGAGGCAGTTTTTCCAAGCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR CAA 90 bp TTAGCAAATACTAAAAACTTCAAAGAGGCAGGATGCAGGCACTCTCTCTGTCATTGGGTAGGTCGGAAATaGTCTCCCAAAATCCCATCG +
Preference number: 5 (lower is better)
Translates to: LANTKNFKEAGCRHSLCHWVGRK*SPKIPS
Trigger: CGATGGGATTTTGGGAGACAATTTCCGACCTACCCA...ATGACAGAGAGAGTGCCTGCATCCTGCCTCTTTGAAGTTTTTAGTATTTGCTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS-3UTR CAA 90 bp CAGGAAATAAATGACTTGGCTCTGGGAATGTGCTTTTCTTATCTCATATTGATAATGGTGTGTCCATCGTaGGTGACTTCACAGTCCCGG +
Preference number: 5 (lower is better)
Translates to: QEINDLALGMCFSYLILIMVCPS*VTSQSR
Trigger: CCGGGACTGTGAAGTCACCAACGATGGACACACCAT...TATCAATATGAGATAAGAAAAGCACATTCCCAGAGCCAAGTCATTTATTTCCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS GCA 72 bp TGGCGATACCATGGGGCTTCCCAACCGCCTCATCGATaGTGCCAAACAGTGTGGAATTCCAGTGGATCAGGT +
Preference number: 6 (lower is better)
Translates to: WRYHGASQPPHR*CQTVWNSSGSG
Trigger: ACCTGATCCACTGGAATTCCACACTGTTTGGCAGCATCGATGAGGCGGTTGGGAAGCCCCATGGTATCGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS CCA 72 bp GCTTCCCAACCGCCTCATCGATGCTGCCAAACAGTGTaGAATTCCAGTGGATCAGGTGGAGCTCCATGGGAA +
Preference number: 6 (lower is better)
Translates to: ASQPPHRCCQTV*NSSGSGGAPWE
Trigger: TTCCCATGGAGCTCCACCTGATCCACTGGAATTCCACACTGTTTGGCAGCATCGATGAGGCGGTTGGGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS CCA 72 bp GCCTCATCGATGCTGCCAAACAGTGTGGAATTCCAGTaGATCAGGTGGAGCTCCATGGGAAAGGCTTTGAAA +
Preference number: 6 (lower is better)
Translates to: ASSMLPNSVEFQ*IRWSSMGKALK
Trigger: TTTCAAAGCCTTTCCCATGGAGCTCCACCTGATCCACTGGAATTCCACACTGTTTGGCAGCATCGATGAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS CAA 72 bp TTCCAGTGGATCAGGTGGAGCTCCATGGGAAAGGCTTaGAAATTGACCGTGTGCTCAGAACCACGCTGGTTT +
Preference number: 6 (lower is better)
Translates to: FQWIRWSSMGKA*KLTVCSEPRWF
Trigger: AAACCAGCGTGGTTCTGAGCACACGGTCAATTTCAAAGCCTTTCCCATGGAGCTCCACCTGATCCACTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS TCA 72 bp CAACATGTTCCTTCCCGATCTGAACAAATAGTGCAATaGTGGCGATACCATGGGGCTTCCCAACCGCCTCAT +
Preference number: 6 (lower is better)
Translates to: QHVPSRSEQIVQ*WRYHGASQPPH
Trigger: ATGAGGCGGTTGGGAAGCCCCATGGTATCGCCATCATTGCACTATTTGTTCAGATCGGGAAGGAACATGTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS CAA 72 bp AGTGAGGGGTCATACCTGGCTTCTCTGGAGTTTAGGTaGATAGGTGACTGGTACTCCCCATTAGCATCAGGA +
Preference number: 6 (lower is better)
Translates to: SEGSYLASLEFR*IGDWYSPLASG
Trigger: TCCTGATGCTAATGGGGAGTACCAGTCACCTATCAACCTAAACTCCAGAGAAGCCAGGTATGACCCCTCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS CAA 90 bp ACATCCAGCAGTGAGGGGTCATACCTGGCTTCTCTGGAGTTTAGGTaGATAGGTGACTGGTACTCCCCATTAGCATCAGGAAACACTAAG +
Preference number: 6 (lower is better)
Translates to: TSSSEGSYLASLEFR*IGDWYSPLASGNTK
Trigger: CTTAGTGTTTCCTGATGCTAATGGGGAGTACCAGTCACCTATCAACCTAAACTCCAGAGAAGCCAGGTATGACCCCTCACTGCTGGATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS CCA 72 bp TACCTGGCTTCTCTGGAGTTTAGGTTGATAGGTGACTaGTACTCCCCATTAGCATCAGGAAACACTAAGCCC +
Preference number: 6 (lower is better)
Translates to: YLASLEFRLIGD*YSPLASGNTKP
Trigger: GGGCTTAGTGTTTCCTGATGCTAATGGGGAGTACCAGTCACCTATCAACCTAAACTCCAGAGAAGCCAGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8
CDS TCA 72 bp CCTCCTGACAAGACTGATTTTGACTTCAGGATGACTTaGATGGTGTGTCCATCGTTGGTGACTTCACAGTCC +
Preference number: 6 (lower is better)
Translates to: PPDKTDFDFRMT*MVCPSLVTSQS
Trigger: GGACTGTGAAGTCACCAACGATGGACACACCATTCAAGTCATCCTGAAGTCAAAATCAGTCTTGTCAGGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066674.8