Pregenerated sensors for CAR6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028972Ensembl transcript IDs: ENSMUST00000030817.5, ENSMUST00000105683.9
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGGCTAACGTAGCTCCACTTCTTCTCTCGGAGGAGAACTCCCTCTaGGTTAATCAGAGACTCGCTGAAGGCAGCAAGGAGACCCACATT | + |
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Preference number: 1 (lower is better) Translates to: LANVAPLLLSEENSL*VNQRLAEGSKETHI Trigger: AATGTGGGTCTCCTTGCTGCCTTCAGCGAGTCTCTGATTAACCCAGAGGGAGTTCTCCTCCGAGAGAAGAAGTGGAGCTACGTTAGCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| 3UTR-3UTR CCA 90 bp | ACAGGGAATTATGAAAGGCTTGATTTCTTTGCACGTCCGTCGAAGTCTTTTCCCGAGGAGAACTCCCTCTaGGTTAATCAGAGACTCGCT | + |
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Preference number: 2 (lower is better) Translates to: TGNYERLDFFARPSKSFPEENSL*VNQRLA Trigger: AGCGAGTCTCTGATTAACCCAGAGGGAGTTCTCCTC...GGGAAAAGACTTCGACGGACGTGCAAAGAAATCAAGCCTTTCATAATTCCCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| 3UTR CCA 72 bp | GTAGCTCCACTTCTTCTCTCGGAGGAGAACTCCCTCTaGGTTAATCAGAGACTCGCTGAAGGCAGCAAGGAG | + |
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Preference number: 3 (lower is better) Translates to: VAPLLLSEENSL*VNQRLAEGSKE Trigger: CTCCTTGCTGCCTTCAGCGAGTCTCTGATTAACCCAGAGGGAGTTCTCCTCCGAGAGAAGAAGTGGAGCTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| 3UTR TCA 72 bp | CATGAGCTGCATCTGTGGACCCCAACTTTAGGTGAATaGTTGACAGGGAATTATGAAAGGCTTGATTTCTTT | + |
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Preference number: 3 (lower is better) Translates to: HELHLWTPTLGE*LTGNYERLDFF Trigger: AAAGAAATCAAGCCTTTCATAATTCCCTGTCAATCATTCACCTAAAGTTGGGGTCCACAGATGCAGCTCATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS-3UTR TCA 90 bp | GCAGCAAGGAGACCCACATTCCAGGATTCCTTAGACAAGGGGCAGGGTGAGCCCAAAGTGAAAGGCCTTTaGGATGAACTCAGTGCCGTC | + |
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Preference number: 4 (lower is better) Translates to: AARRPTFQDSLDKGQGEPKVKGL*DELSAV Trigger: GACGGCACTGAGTTCATCTCAAAGGCCTTTCACTTT...GGGCTCACCCTGCCCCTTGTCTAAGGAATCCTGGAATGTGGGTCTCCTTGCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS-3UTR GCA 90 bp | GCTAACGTAGCTCCACTTCTTCTCTCGGAGGAGAACTCCCTCTGGGTTAATCAGCACTGTGGGCCTGGATaGCCAGGAAGAACAGGGACA | + |
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Preference number: 4 (lower is better) Translates to: ANVAPLLLSEENSLWVNQHCGPG*PGRTGT Trigger: TGTCCCTGTTCTTCCTGGGCATCCAGGCCCACAGTG...CTGATTAACCCAGAGGGAGTTCTCCTCCGAGAGAAGAAGTGGAGCTACGTTAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030817.5 |
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| CDS-3UTR GCA 90 bp | GCAGCAAGGAGACCCACATTCCAGGATTCCTTAGACAAGGGGCAGGGTGAGCCCTGTTGGGCTGTGTGCTaGGGTAACCATTTTGAATGG | + |
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Preference number: 4 (lower is better) Translates to: AARRPTFQDSLDKGQGEPCWAVC*GNHFEW Trigger: CCATTCAAAATGGTTACCGCAGCACACAGCCCAACA...GGGCTCACCCTGCCCCTTGTCTAAGGAATCCTGGAATGTGGGTCTCCTTGCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS-3UTR CCA 90 bp | GCTCCACTTCTTCTCTCGGAGGAGAACTCCCTCTGGGTTAATCAGAGACTCGCTCAATCACTGTGGGCCTaGATGCCCAGGAAGAACAGG | + |
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Preference number: 4 (lower is better) Translates to: APLLLSEENSLWVNQRLAQSLWA*MPRKNR Trigger: CCTGTTCTTCCTGGGCATCCAGGCCCACAGTGATTG...AGCGAGTCTCTGATTAACCCAGAGGGAGTTCTCCTCCGAGAGAAGAAGTGGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030817.5 |
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| CDS-3UTR CCA 90 bp | GCTCCACTTCTTCTCTCGGAGGAGAACTCCCTCTGGGTTAATCAGAGACTCGCTCTAAGCACAAACCACTaGACATTCTCTGTGCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: APLLLSEENSLWVNQRLALSTNH*TFSVQG Trigger: CCCCTGCACAGAGAATGTCCAGTGGTTTGTGCTTAG...AGCGAGTCTCTGATTAACCCAGAGGGAGTTCTCCTCCGAGAGAAGAAGTGGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS-3UTR TCA 90 bp | GCTCCACTTCTTCTCTCGGAGGAGAACTCCCTCTGGGTTAATCAGAGACTCGCTAAAGTGAAAGGCCTTTaGGATGAACTCAGTGCCGTC | + |
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Preference number: 4 (lower is better) Translates to: APLLLSEENSLWVNQRLAKVKGL*DELSAV Trigger: GACGGCACTGAGTTCATCTCAAAGGCCTTTCACTTT...AGCGAGTCTCTGATTAACCCAGAGGGAGTTCTCCTCCGAGAGAAGAAGTGGAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS-3UTR CCA 90 bp | GCAGCAAGGAGACCCACATTCCAGGATTCCTTAGACAAGGGGCAGGGTGAGCCCAGTTGTAGTTTCTCCTaGCTTCTCGATGTTCTTCAA | + |
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Preference number: 4 (lower is better) Translates to: AARRPTFQDSLDKGQGEPSCSFS*LLDVLQ Trigger: TTGAAGAACATCGAGAAGCCAGGAGAAACTACAACT...GGGCTCACCCTGCCCCTTGTCTAAGGAATCCTGGAATGTGGGTCTCCTTGCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS-3UTR CCA 90 bp | GCAGCAAGGAGACCCACATTCCAGGATTCCTTAGACAAGGGGCAGGGTGAGCCCGGTAACCATTTTGAATaGTGTTGTTGTTGTGATCCA | + |
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Preference number: 4 (lower is better) Translates to: AARRPTFQDSLDKGQGEPGNHFE*CCCCDP Trigger: TGGATCACAACAACAACACCATTCAAAATGGTTACC...GGGCTCACCCTGCCCCTTGTCTAAGGAATCCTGGAATGTGGGTCTCCTTGCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS-3UTR TCA 90 bp | GCTCCACTTCTTCTCTCGGAGGAGAACTCCCTCTGGGTTAATCAGAGACTCGCTTCCCGTATTCCTTATTaGAGTGAACAAAGTGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: APLLLSEENSLWVNQRLASRIPY*SEQSEP Trigger: AGGCTCACTTTGTTCACTTCAATAAGGAATACGGGA...AGCGAGTCTCTGATTAACCCAGAGGGAGTTCTCCTCCGAGAGAAGAAGTGGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS-3UTR CCA 90 bp | TATGAAAGGCTTGATTTCTTTGCACGTCCGTCGAAGTCTTTTCCCTCTCACCCATGTGGTGAGCGAGCCTaGGTAGGTGTAATAGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: YERLDFFARPSKSFPSHPCGERA*VGVIVV Trigger: CACCACTATTACACCTACCCAGGCTCGCTCACCACA...TGGGTGAGAGGGAAAAGACTTCGACGGACGTGCAAAGAAATCAAGCCTTTCATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS-3UTR TCA 90 bp | GCTAACGTAGCTCCACTTCTTCTCTCGGAGGAGAACTCCCTCTGGGTTAATCAGTCCCGTATTCCTTATTaGAGTGAACAAAGTGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: ANVAPLLLSEENSLWVNQSRIPY*SEQSEP Trigger: AGGCTCACTTTGTTCACTTCAATAAGGAATACGGGA...CTGATTAACCCAGAGGGAGTTCTCCTCCGAGAGAAGAAGTGGAGCTACGTTAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS-3UTR CCA 90 bp | ACAGGGAATTATGAAAGGCTTGATTTCTTTGCACGTCCGTCGAAGTCTTTTCCCTGTGGTGAGCGAGCCTaGGTAGGTGTAATAGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: TGNYERLDFFARPSKSFPCGERA*VGVIVV Trigger: CACCACTATTACACCTACCCAGGCTCGCTCACCACA...GGGAAAAGACTTCGACGGACGTGCAAAGAAATCAAGCCTTTCATAATTCCCTGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS-3UTR TCA 90 bp | TATGAAAGGCTTGATTTCTTTGCACGTCCGTCGAAGTCTTTTCCCTCTCACCCACCTCCATTATACTCCTaGTCCCATCAATGGTGTGTT | + |
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Preference number: 4 (lower is better) Translates to: YERLDFFARPSKSFPSHPPPLYS*SHQWCV Trigger: AACACACCATTGATGGGATCAGGAGTATAATGGAGG...TGGGTGAGAGGGAAAAGACTTCGACGGACGTGCAAAGAAATCAAGCCTTTCATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS-3UTR GCA 90 bp | ACAGGGAATTATGAAAGGCTTGATTTCTTTGCACGTCCGTCGAAGTCTTTTCCCTGTTGGGCTGTGTGCTaGGGTAACCATTTTGAATGG | + |
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Preference number: 4 (lower is better) Translates to: TGNYERLDFFARPSKSFPCWAVC*GNHFEW Trigger: CCATTCAAAATGGTTACCGCAGCACACAGCCCAACA...GGGAAAAGACTTCGACGGACGTGCAAAGAAATCAAGCCTTTCATAATTCCCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS-3UTR CAA 90 bp | GCAGCAAGGAGACCCACATTCCAGGATTCCTTAGACAAGGGGCAGGGTGAGCCCGGCTTCAAGGAGGGATaGAACATCACCTCCTCCGTC | + |
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Preference number: 5 (lower is better) Translates to: AARRPTFQDSLDKGQGEPGFKEG*NITSSV Trigger: GACGGAGGAGGTGATGTTCAATCCCTCCTTGAAGCC...GGGCTCACCCTGCCCCTTGTCTAAGGAATCCTGGAATGTGGGTCTCCTTGCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030817.5 |
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| CDS TCA 90 bp | AGGATACTGCTCAGACCACTGACTTTCTCCCACGCCATCATCCCCTaGATAGCTCCAATCACTGTGGGCCTGGATGCCCAGGAAGAACAG | + |
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Preference number: 5 (lower is better) Translates to: RILLRPLTFSHAIIP*IAPITVGLDAQEEQ Trigger: CTGTTCTTCCTGGGCATCCAGGCCCACAGTGATTGGAGCTATTCAGGGGATGATGGCGTGGGAGAAAGTCAGTGGTCTGAGCAGTATCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030817.5 |
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| CDS-3UTR CAA 90 bp | GCTCCACTTCTTCTCTCGGAGGAGAACTCCCTCTGGGTTAATCAGAGACTCGCTTGGACGTTCAGGAAATaGGCTTCCACCACCCTGTGG | + |
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Preference number: 5 (lower is better) Translates to: APLLLSEENSLWVNQRLAWTFRK*ASTTLW Trigger: CCACAGGGTGGTGGAAGCCAATTTCCTGAACGTCCA...AGCGAGTCTCTGATTAACCCAGAGGGAGTTCTCCTCCGAGAGAAGAAGTGGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS-3UTR CAA 90 bp | GCAGCAAGGAGACCCACATTCCAGGATTCCTTAGACAAGGGGCAGGGTGAGCCCGCTGCGGTAACCATTTaGAATGGTGTTGTTGTTGTG | + |
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Preference number: 5 (lower is better) Translates to: AARRPTFQDSLDKGQGEPAAVTI*NGVVVV Trigger: CACAACAACAACACCATTCAAAATGGTTACCGCAGC...GGGCTCACCCTGCCCCTTGTCTAAGGAATCCTGGAATGTGGGTCTCCTTGCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS-3UTR CAA 90 bp | TATGAAAGGCTTGATTTCTTTGCACGTCCGTCGAAGTCTTTTCCCTCTCACCCATCCACCACCCTGTGGTaGTTGGGCTGTGTGCTGCGG | + |
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Preference number: 5 (lower is better) Translates to: YERLDFFARPSKSFPSHPSTTLW*LGCVLR Trigger: CCGCAGCACACAGCCCAACAACCACAGGGTGGTGGA...TGGGTGAGAGGGAAAAGACTTCGACGGACGTGCAAAGAAATCAAGCCTTTCATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS-3UTR CAA 90 bp | ACAGGGAATTATGAAAGGCTTGATTTCTTTGCACGTCCGTCGAAGTCTTTTCCCTCCACCACCCTGTGGTaGTTGGGCTGTGTGCTGCGG | + |
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Preference number: 5 (lower is better) Translates to: TGNYERLDFFARPSKSFPSTTLW*LGCVLR Trigger: CCGCAGCACACAGCCCAACAACCACAGGGTGGTGGA...GGGAAAAGACTTCGACGGACGTGCAAAGAAATCAAGCCTTTCATAATTCCCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS-3UTR CAA 90 bp | TATGAAAGGCTTGATTTCTTTGCACGTCCGTCGAAGTCTTTTCCCTCTCACCCATGGACGTTCAGGAAATaGGCTTCCACCACCCTGTGG | + |
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Preference number: 5 (lower is better) Translates to: YERLDFFARPSKSFPSHPWTFRK*ASTTLW Trigger: CCACAGGGTGGTGGAAGCCAATTTCCTGAACGTCCA...TGGGTGAGAGGGAAAAGACTTCGACGGACGTGCAAAGAAATCAAGCCTTTCATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS-3UTR CAA 90 bp | GCTAACGTAGCTCCACTTCTTCTCTCGGAGGAGAACTCCCTCTGGGTTAATCAGGCTGCGGTAACCATTTaGAATGGTGTTGTTGTTGTG | + |
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Preference number: 5 (lower is better) Translates to: ANVAPLLLSEENSLWVNQAAVTI*NGVVVV Trigger: CACAACAACAACACCATTCAAAATGGTTACCGCAGC...CTGATTAACCCAGAGGGAGTTCTCCTCCGAGAGAAGAAGTGGAGCTACGTTAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS CCA 90 bp | CAACAAGTTCCTAATGGTCGTGTCTTTCAGAGTTGTAGTTTCTCCTaGCTTCTCGATGTTCTTCAAGGCAGAAATGATGTCGCTGTAGTA | + |
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Preference number: 5 (lower is better) Translates to: QQVPNGRVFQSCSFS*LLDVLQGRNDVAVV Trigger: TACTACAGCGACATCATTTCTGCCTTGAAGAACATCGAGAAGCCAGGAGAAACTACAACTCTGAAAGACACGACCATTAGGAACTTGTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS TCA 72 bp | CTCAGACCACTGACTTTCTCCCACGCCATCATCCCCTaGATAGCTCCAATCACTGTGGGCCTGGATGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: LRPLTFSHAIIP*IAPITVGLDAQ Trigger: CTGGGCATCCAGGCCCACAGTGATTGGAGCTATTCAGGGGATGATGGCGTGGGAGAAAGTCAGTGGTCTGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030817.5 |
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| CDS TCA 72 bp | CATAGTTCACCAAGCTCAGGGGCTTCAAGGAGGGATTaGACATCACCTCCTCCGTCTTCACGTCGATGGGCG | + |
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Preference number: 6 (lower is better) Translates to: HSSPSSGASRRD*TSPPPSSRRWA Trigger: CGCCCATCGACGTGAAGACGGAGGAGGTGATGTTCAATCCCTCCTTGAAGCCCCTGAGCTTGGTGAACTATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030817.5 |
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| CDS GCA 72 bp | TGGCTTCCACCACCCTGTGGTTGTTGGGCTGTGTGCTaGGGTAACCATTTTGAATGGTGTTGTTGTTGTGAT | + |
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Preference number: 6 (lower is better) Translates to: WLPPPCGCWAVC*GNHFEWCCCCD Trigger: ATCACAACAACAACACCATTCAAAATGGTTACCGCAGCACACAGCCCAACAACCACAGGGTGGTGGAAGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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| CDS CAA 90 bp | TTCCACCACCCTGTGGTTGTTGGGCTGTGTGCTGCGGTAACCATTTaGAATGGTGTTGTTGTTGTGATCCATAACAGAGTTTTCTATGGT | + |
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Preference number: 6 (lower is better) Translates to: FHHPVVVGLCAAVTI*NGVVVVIHNRVFYG Trigger: ACCATAGAAAACTCTGTTATGGATCACAACAACAACACCATTCAAAATGGTTACCGCAGCACACAGCCCAACAACCACAGGGTGGTGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030817.5 ENSMUST00000105683.9 |
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