Pregenerated sensors for CAR5B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031373Ensembl transcript IDs: ENSMUST00000033739.5
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATGAACACTGGAAGAGAGCTGAAGCTGAGCGGAGTGGCGCACACTTaGAATGCTAGCAGTTGGGATGTGGAAGCAGGAGGACCTGAAGCT | + |
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Preference number: 1 (lower is better) Translates to: MNTGRELKLSGVAHT*NASSWDVEAGGPEA Trigger: AGCTTCAGGTCCTCCTGCTTCCACATCCCAACTGCTAGCATTGCAAGTGTGCGCCACTCCGCTCAGCTTCAGCTCTCTTCCAGTGTTCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR CCA 90 bp | GGCAGATTCCTCTGCCTTAACGCTGTCATAAGAAAGGGTGACCTCTaGACTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTT | + |
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Preference number: 1 (lower is better) Translates to: GRFLCLNAVIRKGDL*TGEMAQQLRALTAL Trigger: AAGAGCAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGTCCAGAGGTCACCCTTTCTTATGACAGCGTTAAGGCAGAGGAATCTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR TCA 90 bp | ATACCTTTAATGTCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTaGGTTCTAGGCCAGCCTGGTCTACAGAGTGAGTTTCCAGAACAG | + |
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Preference number: 1 (lower is better) Translates to: IPLMSALGRQRQVDF*VLGQPGLQSEFPEQ Trigger: CTGTTCTGGAAACTCACTCTGTAGACCAGGCTGGCCTAGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGACATTAAAGGTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR CCA 90 bp | AGTTATGTGAGCTCTGGGGATCAAGCTCAGGTCTTTAGGTTCACATaGCAAGTGTCTTTACCCACTGAGCCAGCCCATGACTACCAAATG | + |
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Preference number: 1 (lower is better) Translates to: SYVSSGDQAQVFRFT*QVSLPTEPAHDYQM Trigger: CATTTGGTAGTCATGGGCTGGCTCAGTGGGTAAAGACACTTGCCATGTGAACCTAAAGACCTGAGCTTGATCCCCAGAGCTCACATAACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR CCA 90 bp | TATTATTATCAGTCAAAGAGCAAATATAATGAAAGCTGGCCTTGGTaGCACAAGCCTTTATTCCCAGCACTTGGGAGGCAAAGACAGACA | + |
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Preference number: 1 (lower is better) Translates to: YYYQSKSKYNESWPW*HKPLFPALGRQRQT Trigger: TGTCTGTCTTTGCCTCCCAAGTGCTGGGAATAAAGGCTTGTGCCACCAAGGCCAGCTTTCATTATATTTGCTCTTTGACTGATAATAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR CCA 90 bp | ACATATTATTATCAGTCAAAGAGCAAATATAATGAAAGCTGGCCTTaGTGGCACAAGCCTTTATTCCCAGCACTTGGGAGGCAAAGACAG | + |
|
Preference number: 1 (lower is better) Translates to: TYYYQSKSKYNESWP*WHKPLFPALGRQRQ Trigger: CTGTCTTTGCCTCCCAAGTGCTGGGAATAAAGGCTTGTGCCACCAAGGCCAGCTTTCATTATATTTGCTCTTTGACTGATAATAATATGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR CCA 90 bp | AATGACACATATTATTATCAGTCAAAGAGCAAATATAATGAAAGCTaGCCTTGGTGGCACAAGCCTTTATTCCCAGCACTTGGGAGGCAA | + |
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Preference number: 1 (lower is better) Translates to: NDTYYYQSKSKYNES*PWWHKPLFPALGRQ Trigger: TTGCCTCCCAAGTGCTGGGAATAAAGGCTTGTGCCACCAAGGCCAGCTTTCATTATATTTGCTCTTTGACTGATAATAATATGTGTCATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR-3UTR GCA 90 bp | AGAACAGCCAGGGCTATCCAGAGAAACCCTGTCTTGAACCGTCCCCCAAAGTTTGCCGTGCGCCACCACTaGCTGGCAGATTCCTCTGCC | + |
|
Preference number: 2 (lower is better) Translates to: RTARAIQRNPVLNRPPKFAVRHH*LADSSA Trigger: GGCAGAGGAATCTGCCAGGCAGTGGTGGCGCACGGC...AAACTTTGGGGGACGGTTCAAGACAGGGTTTCTCTGGATAGCCCTGGCTGTTCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR-3UTR TCA 90 bp | ACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCTAGGCCAGCCTGGTCTACAAGACAGGTGGATTTCTaGGTTCGAGGCCAGCCTGGT | + |
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Preference number: 2 (lower is better) Translates to: TWEAEAGGFLSSRPAWSTRQVDF*VRGQPG Trigger: ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGTCT...TGTAGACCAGGCTGGCCTAGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR-3UTR CCA 90 bp | CAGTGGCGGCGCATACCTTTAATGTCAGCACTTGGGAGGCAGAGGCAGGTGGATTTTAATCCCAGCACTTaGGAGGCAGAGACAGGTGGA | + |
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Preference number: 2 (lower is better) Translates to: QWRRIPLMSALGRQRQVDFNPST*EAETGG Trigger: TCCACCTGTCTCTGCCTCCCAAGTGCTGGGATTAAA...ATCCACCTGCCTCTGCCTCCCAAGTGCTGACATTAAAGGTATGCGCCGCCACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR-3UTR TCA 90 bp | ACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCTAGGCCAGCCTGGTCTACATGTCATAAGAAAGGGTaGCCTCTGGACTGGAGAGAT | + |
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Preference number: 2 (lower is better) Translates to: TWEAEAGGFLSSRPAWSTCHKKG*PLDWRD Trigger: ATCTCTCCAGTCCAGAGGTCACCCTTTCTTATGACA...TGTAGACCAGGCTGGCCTAGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR-3UTR TCA 90 bp | CATACCTTTAATGTCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCTGCCTGGTCTACAGAGTaGGTTTCCAGAACAGCCAGG | + |
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Preference number: 2 (lower is better) Translates to: HTFNVSTWEAEAGGFLSSAWSTE*VSRTAR Trigger: CCTGGCTGTTCTGGAAACTCACTCTGTAGACCAGGC...AGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGACATTAAAGGTATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR-3UTR CCA 90 bp | CCTTTATTCCCAGCACTTGGGAGGCAAAGACAGACAGACTTCTGTGAGTTCAAGGGAGGCAGAGACAGGTaGATTTCTGAGTTCGAGGCC | + |
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Preference number: 2 (lower is better) Translates to: PLFPALGRQRQTDFCEFKGGRDR*ISEFEA Trigger: GGCCTCGAACTCAGAAATCCACCTGTCTCTGCCTCC...CTTGAACTCACAGAAGTCTGTCTGTCTTTGCCTCCCAAGTGCTGGGAATAAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR-3UTR CCA 90 bp | CCTTTATTCCCAGCACTTGGGAGGCAAAGACAGACAGACTTCTGTGAGTTCAAGAGAAAGGGTGACCTCTaGACTGGAGAGATGGCTCAG | + |
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Preference number: 2 (lower is better) Translates to: PLFPALGRQRQTDFCEFKRKGDL*TGEMAQ Trigger: CTGAGCCATCTCTCCAGTCCAGAGGTCACCCTTTCT...CTTGAACTCACAGAAGTCTGTCTGTCTTTGCCTCCCAAGTGCTGGGAATAAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR CAA 90 bp | ATAATGAAAGCTGGCCTTGGTGGCACAAGCCTTTATTCCCAGCACTaGGGAGGCAAAGACAGACAGACTTCTGTGAGTTCAAGTCTAGAC | + |
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Preference number: 2 (lower is better) Translates to: IMKAGLGGTSLYSQH*GGKDRQTSVSSSLD Trigger: GTCTAGACTTGAACTCACAGAAGTCTGTCTGTCTTTGCCTCCCAAGTGCTGGGAATAAAGGCTTGTGCCACCAAGGCCAGCTTTCATTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR-3UTR CCA 90 bp | AGAGTGAGTTTCCAGAACAGCCAGGGCTATCCAGAGAAACCCTGTCTTGAACCGGTCTTTAGGTTCACATaGCAAGTGTCTTTACCCACT | + |
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Preference number: 2 (lower is better) Translates to: RVSFQNSQGYPEKPCLEPVFRFT*QVSLPT Trigger: AGTGGGTAAAGACACTTGCCATGTGAACCTAAAGAC...CGGTTCAAGACAGGGTTTCTCTGGATAGCCCTGGCTGTTCTGGAAACTCACTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR-3UTR TCA 90 bp | TGTATGTGGTTGTATGTATGGGATGAAAGATGCTTGGTCAGACAGCAATTTGGTGGAAGCAGGAGGACCTaGAGCTTCAAAGCAGCTCCT | + |
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Preference number: 2 (lower is better) Translates to: CMWLYVWDERCLVRQQFGGSRRT*SFKAAP Trigger: AGGAGCTGCTTTGAAGCTTCAGGTCCTCCTGCTTCC...ACCAAATTGCTGTCTGACCAAGCATCTTTCATCCCATACATACAACCACATACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR-3UTR GCA 90 bp | CATACCTTTAATGTCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCTCTTCAAAGCAGCTCCTaGTACACAGCACCTTCTAAT | + |
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Preference number: 2 (lower is better) Translates to: HTFNVSTWEAEAGGFLSSLQSSS*YTAPSN Trigger: ATTAGAAGGTGCTGTGTAGCAGGAGCTGCTTTGAAG...AGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGACATTAAAGGTATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR-3UTR CCA 90 bp | CATACCTTTAATGTCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCTGGGATGAAAGATGCTTaGTCAGACAGCAATTTGGTG | + |
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Preference number: 2 (lower is better) Translates to: HTFNVSTWEAEAGGFLSSGMKDA*SDSNLV Trigger: CACCAAATTGCTGTCTGACCAAGCATCTTTCATCCC...AGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGACATTAAAGGTATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR-3UTR GCA 90 bp | GACACATATTATTATCAGTCAAAGAGCAAATATAATGAAAGCTGGCCTTGGTGGAAATCCACCTGTCTCTaGCTCCCAAGTGCTGGGATT | + |
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Preference number: 2 (lower is better) Translates to: DTYYYQSKSKYNESWPWWKSTCL*LPSAGI Trigger: AATCCCAGCACTTGGGAGGCAGAGACAGGTGGATTT...CCACCAAGGCCAGCTTTCATTATATTTGCTCTTTGACTGATAATAATATGTGTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR-3UTR TCA 90 bp | TGTATGTGGTTGTATGTATGGGATGAAAGATGCTTGGTCAGACAGCAATTTGGTTGTGAGCTAAGCTCCTaGATTAGACCCAAACAGAAA | + |
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Preference number: 2 (lower is better) Translates to: CMWLYVWDERCLVRQQFGCELSS*IRPKQK Trigger: TTTCTGTTTGGGTCTAATTCAGGAGCTTAGCTCACA...ACCAAATTGCTGTCTGACCAAGCATCTTTCATCCCATACATACAACCACATACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR-3UTR TCA 90 bp | TGTATGTGGTTGTATGTATGGGATGAAAGATGCTTGGTCAGACAGCAATTTGGTCCTTCTAATACAGCCTaGGCTAAAGGATACCTTGTT | + |
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Preference number: 2 (lower is better) Translates to: CMWLYVWDERCLVRQQFGPSNTA*AKGYLV Trigger: AACAAGGTATCCTTTAGCTCAGGCTGTATTAGAAGG...ACCAAATTGCTGTCTGACCAAGCATCTTTCATCCCATACATACAACCACATACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR-3UTR TCA 90 bp | CCCTCTTCTGGTGTGTCTAAAGACAGCTACATCATACTTACATATAATAATAAGGAAAGAAAGAAAGGGTaGCCTCAGATTGACGTTATT | + |
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Preference number: 2 (lower is better) Translates to: PSSGVSKDSYIILTYNNKERKKG*PQIDVI Trigger: AATAACGTCAATCTGAGGTCACCCTTTCTTTCTTTC...CTTATTATTATATGTAAGTATGATGTAGCTGTCTTTAGACACACCAGAAGAGGG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR CAA 90 bp | GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGGTGACCTCAGATaGACGTTATTTGGGTACAGGTTTTTGTTTTTCTTCGTTTGTCTC | + |
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Preference number: 2 (lower is better) Translates to: ERKKERKKERKGDLR*TLFGYRFLFFFVCL Trigger: GAGACAAACGAAGAAAAACAAAAACCTGTACCCAAATAACGTCAATCTGAGGTCACCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR GCA 72 bp | GGAAGAGAGCTGAAGCTGAGCGGAGTGGCGCACACTTaGAATGCTAGCAGTTGGGATGTGGAAGCAGGAGGA | + |
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Preference number: 3 (lower is better) Translates to: GRELKLSGVAHT*NASSWDVEAGG Trigger: TCCTCCTGCTTCCACATCCCAACTGCTAGCATTGCAAGTGTGCGCCACTCCGCTCAGCTTCAGCTCTCTTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR CCA 72 bp | GAGTGGCGCACACTTGCAATGCTAGCAGTTGGGATGTaGAAGCAGGAGGACCTGAAGCTTCAAAGCAGCTCC | + |
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Preference number: 3 (lower is better) Translates to: EWRTLAMLAVGM*KQEDLKLQSSS Trigger: GGAGCTGCTTTGAAGCTTCAGGTCCTCCTGCTTCCACATCCCAACTGCTAGCATTGCAAGTGTGCGCCACTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR CCA 72 bp | CTGAGCGGAGTGGCGCACACTTGCAATGCTAGCAGTTaGGATGTGGAAGCAGGAGGACCTGAAGCTTCAAAG | + |
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Preference number: 3 (lower is better) Translates to: LSGVAHTCNASS*DVEAGGPEASK Trigger: CTTTGAAGCTTCAGGTCCTCCTGCTTCCACATCCCAACTGCTAGCATTGCAAGTGTGCGCCACTCCGCTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR CCA 72 bp | CAGGCAGTGGCGGCGCATACCTTTAATGTCAGCACTTaGGAGGCAGAGGCAGGTGGATTTCTGAGTTCTAGG | + |
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Preference number: 3 (lower is better) Translates to: QAVAAHTFNVST*EAEAGGFLSSR Trigger: CCTAGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGACATTAAAGGTATGCGCCGCCACTGCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR-3UTR CAA 90 bp | CAGTGGCGGCGCATACCTTTAATGTCAGCACTTGGGAGGCAGAGGCAGGTGGATCTTTATTCCCAGCACTaGGGAGGCAAAGACAGACAG | + |
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Preference number: 3 (lower is better) Translates to: QWRRIPLMSALGRQRQVDLYSQH*GGKDRQ Trigger: CTGTCTGTCTTTGCCTCCCAAGTGCTGGGAATAAAG...ATCCACCTGCCTCTGCCTCCCAAGTGCTGACATTAAAGGTATGCGCCGCCACTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR TCA 72 bp | ATCCCAGCACTTGGGAGGCAGAGACAGGTGGATTTCTaGGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTC | + |
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Preference number: 3 (lower is better) Translates to: IPALGRQRQVDF*VRGQPGLQSEF Trigger: GAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGTCTCTGCCTCCCAAGTGCTGGGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR CCA 72 bp | AGCTCTGGGGATCAAGCTCAGGTCTTTAGGTTCACATaGCAAGTGTCTTTACCCACTGAGCCAGCCCATGAC | + |
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Preference number: 3 (lower is better) Translates to: SSGDQAQVFRFT*QVSLPTEPAHD Trigger: GTCATGGGCTGGCTCAGTGGGTAAAGACACTTGCCATGTGAACCTAAAGACCTGAGCTTGATCCCCAGAGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR CCA 72 bp | CTCTGCCTTAACGCTGTCATAAGAAAGGGTGACCTCTaGACTGGAGAGATGGCTCAGCAGTTAAGAGCACTG | + |
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Preference number: 3 (lower is better) Translates to: LCLNAVIRKGDL*TGEMAQQLRAL Trigger: CAGTGCTCTTAACTGCTGAGCCATCTCTCCAGTCCAGAGGTCACCCTTTCTTATGACAGCGTTAAGGCAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR CCA 72 bp | CAGTCAAAGAGCAAATATAATGAAAGCTGGCCTTGGTaGCACAAGCCTTTATTCCCAGCACTTGGGAGGCAA | + |
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Preference number: 3 (lower is better) Translates to: QSKSKYNESWPW*HKPLFPALGRQ Trigger: TTGCCTCCCAAGTGCTGGGAATAAAGGCTTGTGCCACCAAGGCCAGCTTTCATTATATTTGCTCTTTGACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR TCA 72 bp | CCAGAACAGCCAGGGCTATCCAGAGAAACCCTGTCTTaGACCGTCCCCCAAAGTTTTATTTATTATTGTGTG | + |
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Preference number: 3 (lower is better) Translates to: PEQPGLSRETLS*TVPQSFIYYCV Trigger: CACACAATAATAAATAAAACTTTGGGGGACGGTTCAAGACAGGGTTTCTCTGGATAGCCCTGGCTGTTCTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR CCA 72 bp | TATCAGTCAAAGAGCAAATATAATGAAAGCTGGCCTTaGTGGCACAAGCCTTTATTCCCAGCACTTGGGAGG | + |
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Preference number: 3 (lower is better) Translates to: YQSKSKYNESWP*WHKPLFPALGR Trigger: CCTCCCAAGTGCTGGGAATAAAGGCTTGTGCCACCAAGGCCAGCTTTCATTATATTTGCTCTTTGACTGATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR-3UTR CAA 90 bp | CATACCTTTAATGTCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCTTTTGGGTACAGGTTTTaGTTTTTCTTCGTTTGTCTC | + |
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Preference number: 3 (lower is better) Translates to: HTFNVSTWEAEAGGFLSSFGYRF*FFFVCL Trigger: GAGACAAACGAAGAAAAACAAAAACCTGTACCCAAA...AGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGACATTAAAGGTATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR-3UTR CAA 90 bp | TGTATGTGGTTGTATGTATGGGATGAAAGATGCTTGGTCAGACAGCAATTTGGTTTTGTTTTTCTTCGTTaGTCTCCCGGTCTTTGCTTT | + |
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Preference number: 3 (lower is better) Translates to: CMWLYVWDERCLVRQQFGFVFLR*SPGLCF Trigger: AAAGCAAAGACCGGGAGACAAACGAAGAAAAACAAA...ACCAAATTGCTGTCTGACCAAGCATCTTTCATCCCATACATACAACCACATACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS-3UTR TCA 90 bp | AGAGTGAGTTTCCAGAACAGCCAGGGCTATCCAGAGAAACCCTGTCTTGAACCGCCAGGTGACAGACTCTaGGAGGGGCGGCGTAGTGAG | + |
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Preference number: 4 (lower is better) Translates to: RVSFQNSQGYPEKPCLEPPGDRL*EGRRSE Trigger: CTCACTACGCCGCCCCTCTCAGAGTCTGTCACCTGG...CGGTTCAAGACAGGGTTTCTCTGGATAGCCCTGGCTGTTCTGGAAACTCACTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS-3UTR TCA 90 bp | ACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCTAGGCCAGCCTGGTCTACACGATTCATCAGCGGCTaGAGAGGGCGGAAGTTGTCC | + |
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Preference number: 4 (lower is better) Translates to: TWEAEAGGFLSSRPAWSTRFISG*RGRKLS Trigger: GGACAACTTCCGCCCTCTTCAGCCGCTGATGAATCG...TGTAGACCAGGCTGGCCTAGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS-3UTR CCA 90 bp | GACCAGGCTGGCCTCGAACTCAGAAATCCACCTGTCTCTGCCTCCCAAGTGCTGCCAGCACCTTCTCCATaGCAATGTACTCGAAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: DQAGLELRNPPVSASQVLPAPSP*QCTRRD Trigger: GTCTCTTCGAGTACATTGCCATGGAGAAGGTGCTGG...CAGCACTTGGGAGGCAGAGACAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR CAA 72 bp | GCTGGCCTTGGTGGCACAAGCCTTTATTCCCAGCACTaGGGAGGCAAAGACAGACAGACTTCTGTGAGTTCA | + |
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Preference number: 4 (lower is better) Translates to: AGLGGTSLYSQH*GGKDRQTSVSS Trigger: TGAACTCACAGAAGTCTGTCTGTCTTTGCCTCCCAAGTGCTGGGAATAAAGGCTTGTGCCACCAAGGCCAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS-3UTR GCA 90 bp | ACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCTAGGCCAGCCTGGTCTACATCCTGGTTCTGTATGTaGAGGTATAGAGACTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: TWEAEAGGFLSSRPAWSTSWFCM*RYRDCR Trigger: CCTGCAGTCTCTATACCTGCACATACAGAACCAGGA...TGTAGACCAGGCTGGCCTAGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS-3UTR CCA 90 bp | AGAGTGAGTTTCCAGAACAGCCAGGGCTATCCAGAGAAACCCTGTCTTGAACCGCAAGTGCAGCTCTGCTaGGTAGCATTTACTGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: RVSFQNSQGYPEKPCLEPQVQLC*VAFTVH Trigger: GTGGACAGTAAATGCTACCCAGCAGAGCTGCACTTG...CGGTTCAAGACAGGGTTTCTCTGGATAGCCCTGGCTGTTCTGGAAACTCACTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS-3UTR TCA 90 bp | AGAGTGAGTTTCCAGAACAGCCAGGGCTATCCAGAGAAACCCTGTCTTGAACCGGTCCTTGTGCTTAATTaGTGGCAAAGTGTCCACCAA | + |
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Preference number: 4 (lower is better) Translates to: RVSFQNSQGYPEKPCLEPVLVLN*WQSVHQ Trigger: TTGGTGGACACTTTGCCATCAATTAAGCACAAGGAC...CGGTTCAAGACAGGGTTTCTCTGGATAGCCCTGGCTGTTCTGGAAACTCACTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS-3UTR TCA 90 bp | CCTTTATTCCCAGCACTTGGGAGGCAAAGACAGACAGACTTCTGTGAGTTCAAGTCTCTCCCTCAGAAGTaGAAAGCAGGGTCCGAAACT | + |
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Preference number: 4 (lower is better) Translates to: PLFPALGRQRQTDFCEFKSLPQK*KAGSET Trigger: AGTTTCGGACCCTGCTTTTCACTTCTGAGGGAGAGA...CTTGAACTCACAGAAGTCTGTCTGTCTTTGCCTCCCAAGTGCTGGGAATAAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS-3UTR TCA 90 bp | AGAACAGCCAGGGCTATCCAGAGAAACCCTGTCTTGAACCGTCCCCCAAAGTTTGCTTCACTTGTATATTaGGCACATAGTCATGGCGGA | + |
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Preference number: 4 (lower is better) Translates to: RTARAIQRNPVLNRPPKFASLVY*AHSHGG Trigger: TCCGCCATGACTATGTGCTCAATATACAAGTGAAGC...AAACTTTGGGGGACGGTTCAAGACAGGGTTTCTCTGGATAGCCCTGGCTGTTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS-3UTR GCA 90 bp | CAGTGGCGGCGCATACCTTTAATGTCAGCACTTGGGAGGCAGAGGCAGGTGGATACTTTCAAATTTGACTaGGTTCCAATGTACCAAGTG | + |
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Preference number: 4 (lower is better) Translates to: QWRRIPLMSALGRQRQVDTFKFD*VPMYQV Trigger: CACTTGGTACATTGGAACGCAGTCAAATTTGAAAGT...ATCCACCTGCCTCTGCCTCCCAAGTGCTGACATTAAAGGTATGCGCCGCCACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS-3UTR TCA 90 bp | TGTATGTGGTTGTATGTATGGGATGAAAGATGCTTGGTCAGACAGCAATTTGGTGTCATGGCGGAAGGATaGGCGGACTGTGCGATTCAT | + |
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Preference number: 4 (lower is better) Translates to: CMWLYVWDERCLVRQQFGVMAEG*ADCAIH Trigger: ATGAATCGCACAGTCCGCTCATCCTTCCGCCATGAC...ACCAAATTGCTGTCTGACCAAGCATCTTTCATCCCATACATACAACCACATACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS-3UTR GCA 90 bp | TGTATGTGGTTGTATGTATGGGATGAAAGATGCTTGGTCAGACAGCAATTTGGTTTACTGTCCACGGTGTaGTCAGAGCCCCAAGCATCA | + |
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Preference number: 4 (lower is better) Translates to: CMWLYVWDERCLVRQQFGLLSTV*SEPQAS Trigger: TGATGCTTGGGGCTCTGAGCACACCGTGGACAGTAA...ACCAAATTGCTGTCTGACCAAGCATCTTTCATCCCATACATACAACCACATACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR CAA 72 bp | TCCAGAACAGCCAGGGCTATCCAGAGAAACCCTGTCTaGAACCGTCCCCCAAAGTTTTATTTATTATTGTGT | + |
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Preference number: 4 (lower is better) Translates to: SRTARAIQRNPV*NRPPKFYLLLC Trigger: ACACAATAATAAATAAAACTTTGGGGGACGGTTCAAGACAGGGTTTCTCTGGATAGCCCTGGCTGTTCTGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS-3UTR TCA 90 bp | TGTATGTGGTTGTATGTATGGGATGAAAGATGCTTGGTCAGACAGCAATTTGGTACAAGAAGGGTCAAATaGTCCAAATTCCACCAGGGT | + |
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Preference number: 4 (lower is better) Translates to: CMWLYVWDERCLVRQQFGTRRVK*SKFHQG Trigger: ACCCTGGTGGAATTTGGATCATTTGACCCTTCTTGT...ACCAAATTGCTGTCTGACCAAGCATCTTTCATCCCATACATACAACCACATACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| 3UTR CAA 72 bp | GGTGACCTCAGATTGACGTTATTTGGGTACAGGTTTTaGTTTTTCTTCGTTTGTCTCCCGGTCTTTGCTTTA | + |
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Preference number: 4 (lower is better) Translates to: GDLRLTLFGYRF*FFFVCLPVFAL Trigger: TAAAGCAAAGACCGGGAGACAAACGAAGAAAAACAAAAACCTGTACCCAAATAACGTCAATCTGAGGTCACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS-3UTR GCA 90 bp | CCCTCTTCTGGTGTGTCTAAAGACAGCTACATCATACTTACATATAATAATAAGACCAGGGTGTCCTTGTaGTTAATTGATGGCAAAGTG | + |
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Preference number: 4 (lower is better) Translates to: PSSGVSKDSYIILTYNNKTRVSL*LIDGKV Trigger: CACTTTGCCATCAATTAAGCACAAGGACACCCTGGT...CTTATTATTATATGTAAGTATGATGTAGCTGTCTTTAGACACACCAGAAGAGGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS GCA 90 bp | GAGGTAAGGCTCGGTTCCTGGTTCTGTATGTGCAGGTATAGAGACTaGAGGACCTCCGTGGCACCAACCTCGGAACCCAGCACCTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: EVRLGSWFCMCRYRD*RTSVAPTSEPSTFS Trigger: GGAGAAGGTGCTGGGTTCCGAGGTTGGTGCCACGGAGGTCCTGCAGTCTCTATACCTGCACATACAGAACCAGGAACCGAGCCTTACCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS GCA 90 bp | AGTTCTCCCAGAGTGGAGGTAAGGCTCGGTTCCTGGTTCTGTATGTaGAGGTATAGAGACTGCAGGACCTCCGTGGCACCAACCTCGGAA | + |
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Preference number: 5 (lower is better) Translates to: SSPRVEVRLGSWFCM*RYRDCRTSVAPTSE Trigger: TTCCGAGGTTGGTGCCACGGAGGTCCTGCAGTCTCTATACCTGCACATACAGAACCAGGAACCGAGCCTTACCTCCACTCTGGGAGAACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS CCA 72 bp | TCTGTATGTGCAGGTATAGAGACTGCAGGACCTCCGTaGCACCAACCTCGGAACCCAGCACCTTCTCCATGG | + |
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Preference number: 6 (lower is better) Translates to: SVCAGIETAGPP*HQPRNPAPSPW Trigger: CCATGGAGAAGGTGCTGGGTTCCGAGGTTGGTGCCACGGAGGTCCTGCAGTCTCTATACCTGCACATACAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS GCA 72 bp | AGAGTGGAGGTAAGGCTCGGTTCCTGGTTCTGTATGTaGAGGTATAGAGACTGCAGGACCTCCGTGGCACCA | + |
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Preference number: 6 (lower is better) Translates to: RVEVRLGSWFCM*RYRDCRTSVAP Trigger: TGGTGCCACGGAGGTCCTGCAGTCTCTATACCTGCACATACAGAACCAGGAACCGAGCCTTACCTCCACTCT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS TCA 72 bp | CGGAAGGATGAGCGGACTGTGCGATTCATCAGCGGCTaGAGAGGGCGGAAGTTGTCCACCATTCTTTTCTCT | + |
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Preference number: 6 (lower is better) Translates to: RKDERTVRFISG*RGRKLSTILFS Trigger: AGAGAAAAGAATGGTGGACAACTTCCGCCCTCTTCAGCCGCTGATGAATCGCACAGTCCGCTCATCCTTCCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS CCA 72 bp | CCAAGTTCTCCCAGAGTGGAGGTAAGGCTCGGTTCCTaGTTCTGTATGTGCAGGTATAGAGACTGCAGGACC | + |
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Preference number: 6 (lower is better) Translates to: PSSPRVEVRLGS*FCMCRYRDCRT Trigger: GGTCCTGCAGTCTCTATACCTGCACATACAGAACCAGGAACCGAGCCTTACCTCCACTCTGGGAGAACTTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS TCA 72 bp | CTTCGCTGGCTGTTGGCTTGGGCTTCACTTGTATATTaGGCACATAGTCATGGCGGAAGGATGAGCGGACTG | + |
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Preference number: 6 (lower is better) Translates to: LRWLLAWASLVY*AHSHGGRMSGL Trigger: CAGTCCGCTCATCCTTCCGCCATGACTATGTGCTCAATATACAAGTGAAGCCCAAGCCAACAGCCAGCGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS TCA 72 bp | CACTTGTATATTGAGCACATAGTCATGGCGGAAGGATaGGCGGACTGTGCGATTCATCAGCGGCTGAAGAGG | + |
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Preference number: 6 (lower is better) Translates to: HLYIEHIVMAEG*ADCAIHQRLKR Trigger: CCTCTTCAGCCGCTGATGAATCGCACAGTCCGCTCATCCTTCCGCCATGACTATGTGCTCAATATACAAGTG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS TCA 72 bp | ATCTGGGCAAGTAGGCATCAGACAAGAAGGGTCAAATaGTCCAAATTCCACCAGGGTGTCCTTGTGCTTAAT | + |
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Preference number: 6 (lower is better) Translates to: IWASRHQTRRVK*SKFHQGVLVLN Trigger: ATTAAGCACAAGGACACCCTGGTGGAATTTGGATCATTTGACCCTTCTTGTCTGATGCCTACTTGCCCAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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| CDS GCA 72 bp | GGGTCAAATGATCCAAATTCCACCAGGGTGTCCTTGTaGTTAATTGATGGCAAAGTGTCCACCAATTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: GSNDPNSTRVSL*LIDGKVSTNFC Trigger: ACAGAAATTGGTGGACACTTTGCCATCAATTAAGCACAAGGACACCCTGGTGGAATTTGGATCATTTGACCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033739.5 |
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