Pregenerated sensors for CAR5A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025317Ensembl transcript IDs: ENSMUST00000057653.8
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GCTGGGATTAAAGGCGTGCGCCACTGCCGCCCCGGCTCGTCGTGCCACGTGGCAGCCCCCTTTCCGGTCTaGTCTGCCTATCCTTACAGA | + |
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Preference number: 2 (lower is better) Translates to: AGIKGVRHCRPGSSCHVAAPFPV*SAYPYR Trigger: TCTGTAAGGATAGGCAGAGCAGACCGGAAAGGGGGC...TGCCACGTGGCACGACGAGCCGGGGCGGCAGTGGCGCACGCCTTTAATCCCAGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS-3UTR TCA 90 bp | GCTGGGATTAAAGGCGTGCGCCACTGCCGCCCCGGCTCGTCGTGCCACGTGGCAGAAGTTTGCGGTCCCTaGGGGGCTGGAGCGGGCGGT | + |
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Preference number: 4 (lower is better) Translates to: AGIKGVRHCRPGSSCHVAEVCGP*GAGAGG Trigger: ACCGCCCGCTCCAGCCCCTCAGGGACCGCAAACTTC...TGCCACGTGGCACGACGAGCCGGGGCGGCAGTGGCGCACGCCTTTAATCCCAGC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS-3UTR CCA 90 bp | GCCACGTGGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCCGAAACGCCAGCGCTGTaGCCCTGTGGCACAGAGAAG | + |
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Preference number: 4 (lower is better) Translates to: ATWHPGNSGPLSGLLCLSETPAL*PCGTEK Trigger: CTTCTCTGTGCCACAGGGCCACAGCGCTGGCGTTTC...GGATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCCACGTGGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS-3UTR TCA 90 bp | TGCCACGTGGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCCATCATAGGAGACCCTaGGTGGTGCCAGCTGCGGGT | + |
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Preference number: 4 (lower is better) Translates to: CHVAPWKLGPPFRSALPIHHRRP*VVPAAG Trigger: ACCCGCAGCTGGCACCACTCAGGGTCTCCTATGATG...GATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCCACGTGGCA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS-3UTR GCA 90 bp | TGCCACGTGGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCGGAGACCCTGAGTGGTaGCAGCTGCGGGTCATACAC | + |
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Preference number: 4 (lower is better) Translates to: CHVAPWKLGPPFRSALPIGDPEW*QLRVIH Trigger: GTGTATGACCCGCAGCTGGCACCACTCAGGGTCTCC...GATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCCACGTGGCA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS-3UTR CCA 90 bp | GCCACGTGGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCCAGAGTGTGCGGAACGTaGATAGCTGGCTCGGGGACA | + |
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Preference number: 4 (lower is better) Translates to: ATWHPGNSGPLSGLLCLSRVCGT*IAGSGT Trigger: TGTCCCCGAGCCAGCTATCCACGTTCCGCACACTCT...GGATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCCACGTGGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS-3UTR TCA 90 bp | TGCCACGTGGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCGAAGTCCCACATGCCTaGGGATGGCTAAGGGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: CHVAPWKLGPPFRSALPIEVPHA*GWLRAC Trigger: GCAAGCCCTTAGCCATCCTCAGGCATGTGGGACTTC...GATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCCACGTGGCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS-3UTR TCA 90 bp | TGGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCCTTACAGTTCTGCAGGGCCTGGTaGTGCGCCCCGAGCTTCAGA | + |
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Preference number: 4 (lower is better) Translates to: WHPGNSGPLSGLLCLSLQFCRAW*CAPSFR Trigger: TCTGAAGCTCGGGGCGCATCACCAGGCCCTGCAGAA...CTGTAAGGATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS-3UTR TCA 90 bp | CCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCCTTACAGACTTCATCAGAAACACGCCGATaGCCGCCAGCCCGTTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: PGNSGPLSGLLCLSLQTSSETRR*PPARSP Trigger: GGGAGAACGGGCTGGCGGTCATCGGCGTGTTTCTGA...TGAAGTCTGTAAGGATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS-3UTR CCA 90 bp | ACGTGGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCCTTACAGATGGAGCTCAGCTaGGTAGGTATGGCCGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: TWHPGNSGPLSGLLCLSLQMELS*VGMAVH Trigger: GTGGACGGCCATACCTACCCAGCTGAGCTCCATCTG...TAAGGATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCCACGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS-3UTR TCA 90 bp | TGCCACGTGGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCTTCGTGGAATTCCAGTaGACCAGATGGAGCTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: CHVAPWKLGPPFRSALPIFVEFQ*TRWSSA Trigger: AGCTGAGCTCCATCTGGTTCACTGGAATTCCACGAA...GATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCCACGTGGCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS-3UTR GCA 90 bp | ACGTGGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCCTTATCCTCTGCACAGGAATaGTGGAAACGCCAGCGCTGT | + |
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Preference number: 4 (lower is better) Translates to: TWHPGNSGPLSGLLCLSLSSAQE*WKRQRC Trigger: ACAGCGCTGGCGTTTCCAGCATTCCTGTGCAGAGGA...TAAGGATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCCACGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS-3UTR CCA 90 bp | GGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCCTTACAGAATAGGAGACCCTGAGTaGTGCCAGCTGCGGGTCATA | + |
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Preference number: 4 (lower is better) Translates to: GTLETRAPFPVCSAYPYRIGDPE*CQLRVI Trigger: TATGACCCGCAGCTGGCACCACTCAGGGTCTCCTAT...TCTGTAAGGATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS-3UTR GCA 90 bp | GGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCCTTACAGAGTTGCTGTGTTCCTCTaGACAGGAATGCTGGAAACG | + |
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Preference number: 4 (lower is better) Translates to: GTLETRAPFPVCSAYPYRVAVFL*TGMLET Trigger: CGTTTCCAGCATTCCTGTGCAGAGGAACACAGCAAC...TCTGTAAGGATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS GCA 90 bp | CAGAGGGGGTGTCGGGCACAGTTGCTGTGTTCCTCTGCACAGGAATaGTGGAAACGCCAGCGCTGTGGCCCTGTGGCACAGAGAAGTCCC | + |
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Preference number: 5 (lower is better) Translates to: QRGCRAQLLCSSAQE*WKRQRCGPVAQRSP Trigger: GGGACTTCTCTGTGCCACAGGGCCACAGCGCTGGCGTTTCCAGCATTCCTGTGCAGAGGAACACAGCAACTGTGCCCGACACCCCCTCTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS-3UTR CAA 90 bp | GCTGGGATTAAAGGCGTGCGCCACTGCCGCCCCGGCTCGTCGTGCCACGTGGCAAGCCCCATTCATCTGTaGCTCCCCAGTGGAAATGAA | + |
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Preference number: 5 (lower is better) Translates to: AGIKGVRHCRPGSSCHVASPIHL*LPSGNE Trigger: TTCATTTCCACTGGGGAGCAACAGATGAATGGGGCT...TGCCACGTGGCACGACGAGCCGGGGCGGCAGTGGCGCACGCCTTTAATCCCAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS TCA 90 bp | TCTGCAGGGCCTGGTGATGCGCCCCGAGCTTCAGAAACACGCCGATaGCCGCCAGCCCGTTCTCCCCCACGGAGGCTTTCTTGTAATTTT | + |
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Preference number: 5 (lower is better) Translates to: SAGPGDAPRASETRR*PPARSPPRRLSCNF Trigger: AAAATTACAAGAAAGCCTCCGTGGGGGAGAACGGGCTGGCGGTCATCGGCGTGTTTCTGAAGCTCGGGGCGCATCACCAGGCCCTGCAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS-3UTR CAA 90 bp | GGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCCTTACAGAGCCACCTGTGTATCCTaGTGTCTTACTTCCGGCAAG | + |
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Preference number: 5 (lower is better) Translates to: GTLETRAPFPVCSAYPYRATCVS*CLTSGK Trigger: CTTGCCGGAAGTAAGACACAAGGATACACAGGTGGC...TCTGTAAGGATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS CCA 90 bp | AATCCCGGCAGGCAGGCAGCAGACAAGAGGGGTCAAAGGGTCCCATaGCCACCTGTGTATCCTTGTGTCTTACTTCCGGCAAGACATCCA | + |
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Preference number: 5 (lower is better) Translates to: NPGRQAADKRGQRVP*PPVYPCVLLPARHP Trigger: TGGATGTCTTGCCGGAAGTAAGACACAAGGATACACAGGTGGCCATGGGACCCTTTGACCCCTCTTGTCTGCTGCCTGCCTGCCGGGATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS TCA 72 bp | CCTGGTGATGCGCCCCGAGCTTCAGAAACACGCCGATaGCCGCCAGCCCGTTCTCCCCCACGGAGGCTTTCT | + |
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Preference number: 6 (lower is better) Translates to: PGDAPRASETRR*PPARSPPRRLS Trigger: AGAAAGCCTCCGTGGGGGAGAACGGGCTGGCGGTCATCGGCGTGTTTCTGAAGCTCGGGGCGCATCACCAGG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS CAA 90 bp | TCTGCTGAGGACACTGGGCCAGTCCAGAGGGGGTGTCGGGCACAGTaGCTGTGTTCCTCTGCACAGGAATGCTGGAAACGCCAGCGCTGT | + |
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Preference number: 6 (lower is better) Translates to: SAEDTGPVQRGCRAQ*LCSSAQECWKRQRC Trigger: ACAGCGCTGGCGTTTCCAGCATTCCTGTGCAGAGGAACACAGCAACTGTGCCCGACACCCCCTCTGGACTGGCCCAGTGTCCTCAGCAGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS GCA 72 bp | TGTCGGGCACAGTTGCTGTGTTCCTCTGCACAGGAATaGTGGAAACGCCAGCGCTGTGGCCCTGTGGCACAG | + |
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Preference number: 6 (lower is better) Translates to: CRAQLLCSSAQE*WKRQRCGPVAQ Trigger: CTGTGCCACAGGGCCACAGCGCTGGCGTTTCCAGCATTCCTGTGCAGAGGAACACAGCAACTGTGCCCGACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS GCA 72 bp | ACACTGGGCCAGTCCAGAGGGGGTGTCGGGCACAGTTaGTGTGTTCCTCTGCACAGGAATGCTGGAAACGCC | + |
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Preference number: 6 (lower is better) Translates to: TLGQSRGGVGHS*CVPLHRNAGNA Trigger: GGCGTTTCCAGCATTCCTGTGCAGAGGAACACAGCAACTGTGCCCGACACCCCCTCTGGACTGGCCCAGTGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS CAA 72 bp | GACACTGGGCCAGTCCAGAGGGGGTGTCGGGCACAGTaGCTGTGTTCCTCTGCACAGGAATGCTGGAAACGC | + |
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Preference number: 6 (lower is better) Translates to: DTGPVQRGCRAQ*LCSSAQECWKR Trigger: GCGTTTCCAGCATTCCTGTGCAGAGGAACACAGCAACTGTGCCCGACACCCCCTCTGGACTGGCCCAGTGTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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| CDS CCA 72 bp | AGGCAGGCAGCAGACAAGAGGGGTCAAAGGGTCCCATaGCCACCTGTGTATCCTTGTGTCTTACTTCCGGCA | + |
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Preference number: 6 (lower is better) Translates to: RQAADKRGQRVP*PPVYPCVLLPA Trigger: TGCCGGAAGTAAGACACAAGGATACACAGGTGGCCATGGGACCCTTTGACCCCTCTTGTCTGCTGCCTGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057653.8 |
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