RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CAR5A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025317

Ensembl transcript IDs: ENSMUST00000057653.8

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp GCTGGGATTAAAGGCGTGCGCCACTGCCGCCCCGGCTCGTCGTGCCACGTGGCAGCCCCCTTTCCGGTCTaGTCTGCCTATCCTTACAGA +
Preference number: 2 (lower is better)
Translates to: AGIKGVRHCRPGSSCHVAAPFPV*SAYPYR
Trigger: TCTGTAAGGATAGGCAGAGCAGACCGGAAAGGGGGC...TGCCACGTGGCACGACGAGCCGGGGCGGCAGTGGCGCACGCCTTTAATCCCAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS-3UTR TCA 90 bp GCTGGGATTAAAGGCGTGCGCCACTGCCGCCCCGGCTCGTCGTGCCACGTGGCAGAAGTTTGCGGTCCCTaGGGGGCTGGAGCGGGCGGT +
Preference number: 4 (lower is better)
Translates to: AGIKGVRHCRPGSSCHVAEVCGP*GAGAGG
Trigger: ACCGCCCGCTCCAGCCCCTCAGGGACCGCAAACTTC...TGCCACGTGGCACGACGAGCCGGGGCGGCAGTGGCGCACGCCTTTAATCCCAGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS-3UTR CCA 90 bp GCCACGTGGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCCGAAACGCCAGCGCTGTaGCCCTGTGGCACAGAGAAG +
Preference number: 4 (lower is better)
Translates to: ATWHPGNSGPLSGLLCLSETPAL*PCGTEK
Trigger: CTTCTCTGTGCCACAGGGCCACAGCGCTGGCGTTTC...GGATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCCACGTGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS-3UTR TCA 90 bp TGCCACGTGGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCCATCATAGGAGACCCTaGGTGGTGCCAGCTGCGGGT +
Preference number: 4 (lower is better)
Translates to: CHVAPWKLGPPFRSALPIHHRRP*VVPAAG
Trigger: ACCCGCAGCTGGCACCACTCAGGGTCTCCTATGATG...GATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCCACGTGGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS-3UTR GCA 90 bp TGCCACGTGGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCGGAGACCCTGAGTGGTaGCAGCTGCGGGTCATACAC +
Preference number: 4 (lower is better)
Translates to: CHVAPWKLGPPFRSALPIGDPEW*QLRVIH
Trigger: GTGTATGACCCGCAGCTGGCACCACTCAGGGTCTCC...GATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCCACGTGGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS-3UTR CCA 90 bp GCCACGTGGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCCAGAGTGTGCGGAACGTaGATAGCTGGCTCGGGGACA +
Preference number: 4 (lower is better)
Translates to: ATWHPGNSGPLSGLLCLSRVCGT*IAGSGT
Trigger: TGTCCCCGAGCCAGCTATCCACGTTCCGCACACTCT...GGATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCCACGTGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS-3UTR TCA 90 bp TGCCACGTGGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCGAAGTCCCACATGCCTaGGGATGGCTAAGGGCTTGC +
Preference number: 4 (lower is better)
Translates to: CHVAPWKLGPPFRSALPIEVPHA*GWLRAC
Trigger: GCAAGCCCTTAGCCATCCTCAGGCATGTGGGACTTC...GATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCCACGTGGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS-3UTR TCA 90 bp TGGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCCTTACAGTTCTGCAGGGCCTGGTaGTGCGCCCCGAGCTTCAGA +
Preference number: 4 (lower is better)
Translates to: WHPGNSGPLSGLLCLSLQFCRAW*CAPSFR
Trigger: TCTGAAGCTCGGGGCGCATCACCAGGCCCTGCAGAA...CTGTAAGGATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS-3UTR TCA 90 bp CCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCCTTACAGACTTCATCAGAAACACGCCGATaGCCGCCAGCCCGTTCTCCC +
Preference number: 4 (lower is better)
Translates to: PGNSGPLSGLLCLSLQTSSETRR*PPARSP
Trigger: GGGAGAACGGGCTGGCGGTCATCGGCGTGTTTCTGA...TGAAGTCTGTAAGGATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS-3UTR CCA 90 bp ACGTGGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCCTTACAGATGGAGCTCAGCTaGGTAGGTATGGCCGTCCAC +
Preference number: 4 (lower is better)
Translates to: TWHPGNSGPLSGLLCLSLQMELS*VGMAVH
Trigger: GTGGACGGCCATACCTACCCAGCTGAGCTCCATCTG...TAAGGATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCCACGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS-3UTR TCA 90 bp TGCCACGTGGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCTTCGTGGAATTCCAGTaGACCAGATGGAGCTCAGCT +
Preference number: 4 (lower is better)
Translates to: CHVAPWKLGPPFRSALPIFVEFQ*TRWSSA
Trigger: AGCTGAGCTCCATCTGGTTCACTGGAATTCCACGAA...GATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCCACGTGGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS-3UTR GCA 90 bp ACGTGGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCCTTATCCTCTGCACAGGAATaGTGGAAACGCCAGCGCTGT +
Preference number: 4 (lower is better)
Translates to: TWHPGNSGPLSGLLCLSLSSAQE*WKRQRC
Trigger: ACAGCGCTGGCGTTTCCAGCATTCCTGTGCAGAGGA...TAAGGATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCCACGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS-3UTR CCA 90 bp GGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCCTTACAGAATAGGAGACCCTGAGTaGTGCCAGCTGCGGGTCATA +
Preference number: 4 (lower is better)
Translates to: GTLETRAPFPVCSAYPYRIGDPE*CQLRVI
Trigger: TATGACCCGCAGCTGGCACCACTCAGGGTCTCCTAT...TCTGTAAGGATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS-3UTR GCA 90 bp GGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCCTTACAGAGTTGCTGTGTTCCTCTaGACAGGAATGCTGGAAACG +
Preference number: 4 (lower is better)
Translates to: GTLETRAPFPVCSAYPYRVAVFL*TGMLET
Trigger: CGTTTCCAGCATTCCTGTGCAGAGGAACACAGCAAC...TCTGTAAGGATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS GCA 90 bp CAGAGGGGGTGTCGGGCACAGTTGCTGTGTTCCTCTGCACAGGAATaGTGGAAACGCCAGCGCTGTGGCCCTGTGGCACAGAGAAGTCCC +
Preference number: 5 (lower is better)
Translates to: QRGCRAQLLCSSAQE*WKRQRCGPVAQRSP
Trigger: GGGACTTCTCTGTGCCACAGGGCCACAGCGCTGGCGTTTCCAGCATTCCTGTGCAGAGGAACACAGCAACTGTGCCCGACACCCCCTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS-3UTR CAA 90 bp GCTGGGATTAAAGGCGTGCGCCACTGCCGCCCCGGCTCGTCGTGCCACGTGGCAAGCCCCATTCATCTGTaGCTCCCCAGTGGAAATGAA +
Preference number: 5 (lower is better)
Translates to: AGIKGVRHCRPGSSCHVASPIHL*LPSGNE
Trigger: TTCATTTCCACTGGGGAGCAACAGATGAATGGGGCT...TGCCACGTGGCACGACGAGCCGGGGCGGCAGTGGCGCACGCCTTTAATCCCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS TCA 90 bp TCTGCAGGGCCTGGTGATGCGCCCCGAGCTTCAGAAACACGCCGATaGCCGCCAGCCCGTTCTCCCCCACGGAGGCTTTCTTGTAATTTT +
Preference number: 5 (lower is better)
Translates to: SAGPGDAPRASETRR*PPARSPPRRLSCNF
Trigger: AAAATTACAAGAAAGCCTCCGTGGGGGAGAACGGGCTGGCGGTCATCGGCGTGTTTCTGAAGCTCGGGGCGCATCACCAGGCCCTGCAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS-3UTR CAA 90 bp GGCACCCTGGAAACTCGGGCCCCCTTTCCGGTCTGCTCTGCCTATCCTTACAGAGCCACCTGTGTATCCTaGTGTCTTACTTCCGGCAAG +
Preference number: 5 (lower is better)
Translates to: GTLETRAPFPVCSAYPYRATCVS*CLTSGK
Trigger: CTTGCCGGAAGTAAGACACAAGGATACACAGGTGGC...TCTGTAAGGATAGGCAGAGCAGACCGGAAAGGGGGCCCGAGTTTCCAGGGTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS CCA 90 bp AATCCCGGCAGGCAGGCAGCAGACAAGAGGGGTCAAAGGGTCCCATaGCCACCTGTGTATCCTTGTGTCTTACTTCCGGCAAGACATCCA +
Preference number: 5 (lower is better)
Translates to: NPGRQAADKRGQRVP*PPVYPCVLLPARHP
Trigger: TGGATGTCTTGCCGGAAGTAAGACACAAGGATACACAGGTGGCCATGGGACCCTTTGACCCCTCTTGTCTGCTGCCTGCCTGCCGGGATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS TCA 72 bp CCTGGTGATGCGCCCCGAGCTTCAGAAACACGCCGATaGCCGCCAGCCCGTTCTCCCCCACGGAGGCTTTCT +
Preference number: 6 (lower is better)
Translates to: PGDAPRASETRR*PPARSPPRRLS
Trigger: AGAAAGCCTCCGTGGGGGAGAACGGGCTGGCGGTCATCGGCGTGTTTCTGAAGCTCGGGGCGCATCACCAGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS CAA 90 bp TCTGCTGAGGACACTGGGCCAGTCCAGAGGGGGTGTCGGGCACAGTaGCTGTGTTCCTCTGCACAGGAATGCTGGAAACGCCAGCGCTGT +
Preference number: 6 (lower is better)
Translates to: SAEDTGPVQRGCRAQ*LCSSAQECWKRQRC
Trigger: ACAGCGCTGGCGTTTCCAGCATTCCTGTGCAGAGGAACACAGCAACTGTGCCCGACACCCCCTCTGGACTGGCCCAGTGTCCTCAGCAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS GCA 72 bp TGTCGGGCACAGTTGCTGTGTTCCTCTGCACAGGAATaGTGGAAACGCCAGCGCTGTGGCCCTGTGGCACAG +
Preference number: 6 (lower is better)
Translates to: CRAQLLCSSAQE*WKRQRCGPVAQ
Trigger: CTGTGCCACAGGGCCACAGCGCTGGCGTTTCCAGCATTCCTGTGCAGAGGAACACAGCAACTGTGCCCGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS GCA 72 bp ACACTGGGCCAGTCCAGAGGGGGTGTCGGGCACAGTTaGTGTGTTCCTCTGCACAGGAATGCTGGAAACGCC +
Preference number: 6 (lower is better)
Translates to: TLGQSRGGVGHS*CVPLHRNAGNA
Trigger: GGCGTTTCCAGCATTCCTGTGCAGAGGAACACAGCAACTGTGCCCGACACCCCCTCTGGACTGGCCCAGTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS CAA 72 bp GACACTGGGCCAGTCCAGAGGGGGTGTCGGGCACAGTaGCTGTGTTCCTCTGCACAGGAATGCTGGAAACGC +
Preference number: 6 (lower is better)
Translates to: DTGPVQRGCRAQ*LCSSAQECWKR
Trigger: GCGTTTCCAGCATTCCTGTGCAGAGGAACACAGCAACTGTGCCCGACACCCCCTCTGGACTGGCCCAGTGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8
CDS CCA 72 bp AGGCAGGCAGCAGACAAGAGGGGTCAAAGGGTCCCATaGCCACCTGTGTATCCTTGTGTCTTACTTCCGGCA +
Preference number: 6 (lower is better)
Translates to: RQAADKRGQRVP*PPVYPCVLLPA
Trigger: TGCCGGAAGTAAGACACAAGGATACACAGGTGGCCATGGGACCCTTTGACCCCTCTTGTCTGCTGCCTGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057653.8