Pregenerated sensors for CAR3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027559Ensembl transcript IDs: ENSMUST00000029076.6
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCTTTTATTGTTTCTGTGATCAATGCAAGCTCTTGGCTTCAGTGTTaGCATTCCCTCCTTCCTGTTCCAGGAACCAGACATCCCAGCCTC | + |
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Preference number: 1 (lower is better) Translates to: SFIVSVINASSWLQC*HSLLPVPGTRHPSL Trigger: GAGGCTGGGATGTCTGGTTCCTGGAACAGGAAGGAGGGAATGTCAACACTGAAGCCAAGAGCTTGCATTGATCACAGAAACAATAAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| 3UTR-3UTR CCA 90 bp | CTCTTGGCTTCAGTGTTGACATTCCCTCCTTCCTGTTCCAGGAACCAGACATCCTGTTGTCGGACAGCTTaGAGTAGGGAGCACCAGGAG | + |
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Preference number: 2 (lower is better) Translates to: LLASVLTFPPSCSRNQTSCCRTA*SREHQE Trigger: CTCCTGGTGCTCCCTACTCCAAGCTGTCCGACAACA...GGATGTCTGGTTCCTGGAACAGGAAGGAGGGAATGTCAACACTGAAGCCAAGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| 3UTR-3UTR GCA 90 bp | GCTCTTGGCTTCAGTGTTGACATTCCCTCCTTCCTGTTCCAGGAACCAGACATCGCGGTTGCATGTGACTaGTTCTCCTCTTCCTCTAGG | + |
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Preference number: 2 (lower is better) Translates to: ALGFSVDIPSFLFQEPDIAVACD*FSSSSR Trigger: CCTAGAGGAAGAGGAGAAGCAGTCACATGCAACCGC...GATGTCTGGTTCCTGGAACAGGAAGGAGGGAATGTCAACACTGAAGCCAAGAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| 3UTR-3UTR CCA 90 bp | GCTCTTGGCTTCAGTGTTGACATTCCCTCCTTCCTGTTCCAGGAACCAGACATCCCCGGATACATAGCATaGGCCCATCACTTCTGTAGT | + |
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Preference number: 2 (lower is better) Translates to: ALGFSVDIPSFLFQEPDIPGYIA*AHHFCS Trigger: ACTACAGAAGTGATGGGCCCATGCTATGTATCCGGG...GATGTCTGGTTCCTGGAACAGGAAGGAGGGAATGTCAACACTGAAGCCAAGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| 3UTR-3UTR TCA 90 bp | TGCTCAGTGAGCCACTGTTCTCTATCGCTATTTTTCCATCTATTTCTTCCTCACCACTGCGGTTGCATGTaGCTGCTTCTCCTCTTCCTC | + |
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Preference number: 2 (lower is better) Translates to: CSVSHCSLSLFFHLFLPHHCGCM*LLLLFL Trigger: GAGGAAGAGGAGAAGCAGTCACATGCAACCGCAGTG...GTGAGGAAGAAATAGATGGAAAAATAGCGATAGAGAACAGTGGCTCACTGAGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| 3UTR CAA 90 bp | GTCTTTTATTGTTTCTGTGATCAATGCAAGCTCTTGGCTTCAGTGTaGACATTCCCTCCTTCCTGTTCCAGGAACCAGACATCCCAGCCT | + |
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Preference number: 2 (lower is better) Translates to: VFYCFCDQCKLLASV*TFPPSCSRNQTSQP Trigger: AGGCTGGGATGTCTGGTTCCTGGAACAGGAAGGAGGGAATGTCAACACTGAAGCCAAGAGCTTGCATTGATCACAGAAACAATAAAAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| 3UTR-3UTR TCA 90 bp | AGGAGTGCTGAGATTCTGAGTCTAATATGCTCAGTGAGCCACTGTTCTCTATCGATTCATGCTTCTGGGTaGGATCATGTCAAAAGGCAC | + |
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Preference number: 2 (lower is better) Translates to: RSAEILSLICSVSHCSLSIHASG*DHVKRH Trigger: GTGCCTTTTGACATGATCTCACCCAGAAGCATGAAT...CGATAGAGAACAGTGGCTCACTGAGCATATTAGACTCAGAATCTCAGCACTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| 3UTR-3UTR CCA 90 bp | GTCTTTTATTGTTTCTGTGATCAATGCAAGCTCTTGGCTTCAGTGTTGACATTCAAACACCTGGCTTCATaGGTGTGTTTTATAGGTGAC | + |
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Preference number: 2 (lower is better) Translates to: VFYCFCDQCKLLASVLTFKHLAS*VCFIGD Trigger: GTCACCTATAAAACACACCCATGAAGCCAGGTGTTT...GAATGTCAACACTGAAGCCAAGAGCTTGCATTGATCACAGAAACAATAAAAGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| 3UTR-3UTR CAA 90 bp | GTCTTTTATTGTTTCTGTGATCAATGCAAGCTCTTGGCTTCAGTGTTGACATTCCAGGGGCAGAGTTTCTaGCCCGAAGAGGGCAAGCTC | + |
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Preference number: 3 (lower is better) Translates to: VFYCFCDQCKLLASVLTFQGQSF*PEEGKL Trigger: GAGCTTGCCCTCTTCGGGCAAGAAACTCTGCCCCTG...GAATGTCAACACTGAAGCCAAGAGCTTGCATTGATCACAGAAACAATAAAAGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| 3UTR TCA 72 bp | GTTTCTGTGATCAATGCAAGCTCTTGGCTTCAGTGTTaGCATTCCCTCCTTCCTGTTCCAGGAACCAGACAT | + |
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Preference number: 3 (lower is better) Translates to: VSVINASSWLQC*HSLLPVPGTRH Trigger: ATGTCTGGTTCCTGGAACAGGAAGGAGGGAATGTCAACACTGAAGCCAAGAGCTTGCATTGATCACAGAAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| 3UTR-3UTR CAA 90 bp | CTCTTGGCTTCAGTGTTGACATTCCCTCCTTCCTGTTCCAGGAACCAGACATCCATAAATGGCTCTACTTaGGGCAAAGAAAACCATCTT | + |
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Preference number: 3 (lower is better) Translates to: LLASVLTFPPSCSRNQTSINGST*GKENHL Trigger: AAGATGGTTTTCTTTGCCCAAAGTAGAGCCATTTAT...GGATGTCTGGTTCCTGGAACAGGAAGGAGGGAATGTCAACACTGAAGCCAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| 3UTR-3UTR CAA 90 bp | GTCTTTTATTGTTTCTGTGATCAATGCAAGCTCTTGGCTTCAGTGTTGACATTCCAAAAGGCACTGCGGTaGCATGTGACTGCTTCTCCT | + |
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Preference number: 3 (lower is better) Translates to: VFYCFCDQCKLLASVLTFQKALR*HVTASP Trigger: AGGAGAAGCAGTCACATGCAACCGCAGTGCCTTTTG...GAATGTCAACACTGAAGCCAAGAGCTTGCATTGATCACAGAAACAATAAAAGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR TCA 90 bp | AGGGAGCACCAGGAGGAGACAAGCAGGCTCTTCAGGGGCAGAGTTTCTTGCCCGAGGGTCATAAGATGCTaGCCAGGGCTGCAGAGAGGG | + |
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Preference number: 4 (lower is better) Translates to: REHQEETSRLFRGRVSCPRVIRC*PGLQRG Trigger: CCCTCTCTGCAGCCCTGGTCAGCATCTTATGACCCT...CGGGCAAGAAACTCTGCCCCTGAAGAGCCTGCTTGTCTCCTCCTGGTGCTCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR TCA 90 bp | CTTCCTGTTCCAGGAACCAGACATCCCAGCCTCCAACTCAAAAGACACCTGACACGCAGGGCGGCGTGGTaGAGGAGCCGTGATAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: LPVPGTRHPSLQLKRHLTRRAAW*RSRDRS Trigger: GGACCTATCACGGCTCCTTCACCACGCCGCCCTGCG...TGTCAGGTGTCTTTTGAGTTGGAGGCTGGGATGTCTGGTTCCTGGAACAGGAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR GCA 90 bp | CAAGCAGGCTCTTCAGGGGCAGAGTTTCTTGCCCGAAGAGGGCAAGCTCAGAGCGATGCTGACCAGGGCTaGAGAGAGGGGTCATGCTTG | + |
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Preference number: 4 (lower is better) Translates to: QAGSSGAEFLARRGQAQSDADQG*REGSCL Trigger: CAAGCATGACCCCTCTCTGCAGCCCTGGTCAGCATC...GCTCTGAGCTTGCCCTCTTCGGGCAAGAAACTCTGCCCCTGAAGAGCCTGCTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR TCA 90 bp | GCTCTTGGCTTCAGTGTTGACATTCCCTCCTTCCTGTTCCAGGAACCAGACATCCTGCCCTTGACAGGCTaGGGAGGGCGCCAATTCCCC | + |
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Preference number: 4 (lower is better) Translates to: ALGFSVDIPSFLFQEPDILPLTG*GGRQFP Trigger: GGGGAATTGGCGCCCTCCTCAGCCTGTCAAGGGCAG...GATGTCTGGTTCCTGGAACAGGAAGGAGGGAATGTCAACACTGAAGCCAAGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR GCA 90 bp | CTCTTGGCTTCAGTGTTGACATTCCCTCCTTCCTGTTCCAGGAACCAGACATCCGCAGCAGCCACACAATaGACTCCTCGCAGGGCGGCG | + |
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Preference number: 4 (lower is better) Translates to: LLASVLTFPPSCSRNQTSAAATQ*TPRRAA Trigger: CGCCGCCCTGCGAGGAGTGCATTGTGTGGCTGCTGC...GGATGTCTGGTTCCTGGAACAGGAAGGAGGGAATGTCAACACTGAAGCCAAGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR TCA 90 bp | CTCTTGGCTTCAGTGTTGACATTCCCTCCTTCCTGTTCCAGGAACCAGACATCCCTTGGCCATCTGGTCTaGGCTCACAGTCATGGGCTC | + |
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Preference number: 4 (lower is better) Translates to: LLASVLTFPPSCSRNQTSLGHLV*AHSHGL Trigger: GAGCCCATGACTGTGAGCTCAGACCAGATGGCCAAG...GGATGTCTGGTTCCTGGAACAGGAAGGAGGGAATGTCAACACTGAAGCCAAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR TCA 90 bp | GAAAGTAGGAGTGCTGAGATTCTGAGTCTAATATGCTCAGTGAGCCACTGTTCTTCACCACCCTGCCCTTaGCAGGCTGAGGAGGGCGCC | + |
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Preference number: 4 (lower is better) Translates to: ESRSAEILSLICSVSHCSSPPCP*QAEEGA Trigger: GGCGCCCTCCTCAGCCTGTCAAGGGCAGGGTGGTGA...AGAACAGTGGCTCACTGAGCATATTAGACTCAGAATCTCAGCACTCCTACTTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR GCA 90 bp | GCTCTTGGCTTCAGTGTTGACATTCCCTCCTTCCTGTTCCAGGAACCAGACATCGCGATGCCATCAGGCTaGTTCAGAGCCTCTCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: ALGFSVDIPSFLFQEPDIAMPSG*FRASPK Trigger: CTTTGGAGAGGCTCTGAAGCAGCCTGATGGCATCGC...GATGTCTGGTTCCTGGAACAGGAAGGAGGGAATGTCAACACTGAAGCCAAGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR GCA 90 bp | CTTCCTGTTCCAGGAACCAGACATCCCAGCCTCCAACTCAAAAGACACCTGACATGCCAACCACAGCGATaGCATCAGGCTGCTTCAGAG | + |
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Preference number: 4 (lower is better) Translates to: LPVPGTRHPSLQLKRHLTCQPQR*HQAASE Trigger: CTCTGAAGCAGCCTGATGGCATCGCTGTGGTTGGCA...TGTCAGGTGTCTTTTGAGTTGGAGGCTGGGATGTCTGGTTCCTGGAACAGGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR GCA 90 bp | AGGAGTGCTGAGATTCTGAGTCTAATATGCTCAGTGAGCCACTGTTCTCTATCGCGGGGGCTCATTCTCTaGGCTGGAGAAGAGGCTGCG | + |
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Preference number: 4 (lower is better) Translates to: RSAEILSLICSVSHCSLSRGLIL*AGEEAA Trigger: CGCAGCCTCTTCTCCAGCGCAGAGAATGAGCCCCCG...CGATAGAGAACAGTGGCTCACTGAGCATATTAGACTCAGAATCTCAGCACTCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR CCA 90 bp | GCTCTTGGCTTCAGTGTTGACATTCCCTCCTTCCTGTTCCAGGAACCAGACATCCGCAGCTTGGCCATCTaGTCTGAGCTCACAGTCATG | + |
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Preference number: 4 (lower is better) Translates to: ALGFSVDIPSFLFQEPDIRSLAI*SELTVM Trigger: CATGACTGTGAGCTCAGACCAGATGGCCAAGCTGCG...GATGTCTGGTTCCTGGAACAGGAAGGAGGGAATGTCAACACTGAAGCCAAGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR GCA 90 bp | AGTAGGAGTGCTGAGATTCTGAGTCTAATATGCTCAGTGAGCCACTGTTCTCTACGCTGGAGAAGAGGCTaGGCAGCTTGGCCATCTGGT | + |
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Preference number: 4 (lower is better) Translates to: SRSAEILSLICSVSHCSLRWRRG*AAWPSG Trigger: ACCAGATGGCCAAGCTGCGCAGCCTCTTCTCCAGCG...TAGAGAACAGTGGCTCACTGAGCATATTAGACTCAGAATCTCAGCACTCCTACT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| 3UTR CAA 72 bp | TGCTTCTGGGTGAGATCATGTCAAAAGGCACTGCGGTaGCATGTGACTGCTTCTCCTCTTCCTCTAGGTGTT | + |
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Preference number: 4 (lower is better) Translates to: CFWVRSCQKALR*HVTASPLPLGV Trigger: AACACCTAGAGGAAGAGGAGAAGCAGTCACATGCAACCGCAGTGCCTTTTGACATGATCTCACCCAGAAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR GCA 90 bp | TGCTCAGTGAGCCACTGTTCTCTATCGCTATTTTTCCATCTATTTCTTCCTCACACTCCGTCCACGGTGTaGTCAGAGCCGTGGTCATCA | + |
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Preference number: 4 (lower is better) Translates to: CSVSHCSLSLFFHLFLPHTPSTV*SEPWSS Trigger: TGATGACCACGGCTCTGAGCACACCGTGGACGGAGT...GTGAGGAAGAAATAGATGGAAAAATAGCGATAGAGAACAGTGGCTCACTGAGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR GCA 90 bp | GCTCTTGGCTTCAGTGTTGACATTCCCTCCTTCCTGTTCCAGGAACCAGACATCCTATCTTCAGGAAAATaGCAACCACAGCGATGCCAT | + |
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Preference number: 4 (lower is better) Translates to: ALGFSVDIPSFLFQEPDILSSGK*QPQRCH Trigger: ATGGCATCGCTGTGGTTGGCATTTTCCTGAAGATAG...GATGTCTGGTTCCTGGAACAGGAAGGAGGGAATGTCAACACTGAAGCCAAGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| 3UTR CAA 72 bp | TGTTTCTGTGATCAATGCAAGCTCTTGGCTTCAGTGTaGACATTCCCTCCTTCCTGTTCCAGGAACCAGACA | + |
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Preference number: 4 (lower is better) Translates to: CFCDQCKLLASV*TFPPSCSRNQT Trigger: TGTCTGGTTCCTGGAACAGGAAGGAGGGAATGTCAACACTGAAGCCAAGAGCTTGCATTGATCACAGAAACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR CCA 90 bp | AGGAGTGCTGAGATTCTGAGTCTAATATGCTCAGTGAGCCACTGTTCTCTATCGGTCCCCTTTGGCAATTaGATAAAGTTCATGCCAGTG | + |
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Preference number: 4 (lower is better) Translates to: RSAEILSLICSVSHCSLSVPFGN*IKFMPV Trigger: CACTGGCATGAACTTTATCCAATTGCCAAAGGGGAC...CGATAGAGAACAGTGGCTCACTGAGCATATTAGACTCAGAATCTCAGCACTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR CCA 90 bp | ATGCAAGCTCTTGGCTTCAGTGTTGACATTCCCTCCTTCCTGTTCCAGGAACCAACTGGTTGTCCCCTTTaGCAATTGGATAAAGTTCAT | + |
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Preference number: 4 (lower is better) Translates to: MQALGFSVDIPSFLFQEPTGCPL*QLDKVH Trigger: ATGAACTTTATCCAATTGCCAAAGGGGACAACCAGT...TGGTTCCTGGAACAGGAAGGAGGGAATGTCAACACTGAAGCCAAGAGCTTGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| 3UTR CAA 72 bp | TCTGTCTTTTATTGTTTCTGTGATCAATGCAAGCTCTaGGCTTCAGTGTTGACATTCCCTCCTTCCTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: SVFYCFCDQCKL*ASVLTFPPSCS Trigger: GGAACAGGAAGGAGGGAATGTCAACACTGAAGCCAAGAGCTTGCATTGATCACAGAAACAATAAAAGACAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR GCA 90 bp | GTCTTTTATTGTTTCTGTGATCAATGCAAGCTCTTGGCTTCAGTGTTGACATTCTGCAGAGAGGGGTCATaGTTGATGTCTTTAGTATGC | + |
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Preference number: 4 (lower is better) Translates to: VFYCFCDQCKLLASVLTFCREGS*LMSLVC Trigger: GCATACTAAAGACATCAAGCATGACCCCTCTCTGCA...GAATGTCAACACTGAAGCCAAGAGCTTGCATTGATCACAGAAACAATAAAAGAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR GCA 90 bp | GTCTTTTATTGTTTCTGTGATCAATGCAAGCTCTTGGCTTCAGTGTTGACATTCTTGATGTCTTTAGTATaGAGTTCAATGGGTGACTGG | + |
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Preference number: 4 (lower is better) Translates to: VFYCFCDQCKLLASVLTFLMSLV*SSMGDW Trigger: CCAGTCACCCATTGAACTGCATACTAAAGACATCAA...GAATGTCAACACTGAAGCCAAGAGCTTGCATTGATCACAGAAACAATAAAAGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS CCA 90 bp | GGCGCCAATTCCCCACCAGAGGCACCGGGGGCTCATTCTCTGCGCTaGAGAAGAGGCTGCGCAGCTTGGCCATCTGGTCTGAGCTCACAG | + |
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Preference number: 5 (lower is better) Translates to: GANSPPEAPGAHSLR*RRGCAAWPSGLSSQ Trigger: CTGTGAGCTCAGACCAGATGGCCAAGCTGCGCAGCCTCTTCTCCAGCGCAGAGAATGAGCCCCCGGTGCCTCTGGTGGGGAATTGGCGCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS TCA 90 bp | GGAGCCGTGATAGGTCCAATAGTCCCGGCAAGCAGGGAACAGGCATaGTGGGTCAAAGTGTGTAAAAGGGGCCTCCTTGCCCTTCGTCTT | + |
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Preference number: 5 (lower is better) Translates to: GAVIGPIVPASREQA*WVKVCKRGLLALRL Trigger: AAGACGAAGGGCAAGGAGGCCCCTTTTACACACTTTGACCCATCATGCCTGTTCCCTGCTTGCCGGGACTATTGGACCTATCACGGCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR CAA 90 bp | GGACAGCTTGGAGTAGGGAGCACCAGGAGGAGACAAGCAGGCTCTTCAGGGGCAAGAGAGGGGTCATGCTaGATGTCTTTAGTATGCAGT | + |
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Preference number: 5 (lower is better) Translates to: GQLGVGSTRRRQAGSSGAREGSC*MSLVCS Trigger: ACTGCATACTAAAGACATCAAGCATGACCCCTCTCT...TGCCCCTGAAGAGCCTGCTTGTCTCCTCCTGGTGCTCCCTACTCCAAGCTGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS GCA 90 bp | GAAGAATCTGGAACTCGCCTTTCTCCCGTCCTATCTTCAGGAAAATaGCAACCACAGCGATGCCATCAGGCTGCTTCAGAGCCTCTCCAA | + |
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Preference number: 5 (lower is better) Translates to: EESGTRLSPVLSSGK*QPQRCHQAASEPLQ Trigger: TTGGAGAGGCTCTGAAGCAGCCTGATGGCATCGCTGTGGTTGGCATTTTCCTGAAGATAGGACGGGAGAAAGGCGAGTTCCAGATTCTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS TCA 90 bp | CCCATTGTTCAGGATGGTCTTAGCAGAGCCAGGGTCATAAGATGCTaGCCAGGGCTGCAGAGAGGGGTCATGCTTGATGTCTTTAGTATG | + |
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Preference number: 5 (lower is better) Translates to: PIVQDGLSRARVIRC*PGLQRGVMLDVFSM Trigger: CATACTAAAGACATCAAGCATGACCCCTCTCTGCAGCCCTGGTCAGCATCTTATGACCCTGGCTCTGCTAAGACCATCCTGAACAATGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS GCA 90 bp | CGCCTTTCTCCCGTCCTATCTTCAGGAAAATGCCAACCACAGCGATaGCATCAGGCTGCTTCAGAGCCTCTCCAAAGGTGTTATACTTTG | + |
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Preference number: 5 (lower is better) Translates to: RLSPVLSSGKCQPQR*HQAASEPLQRCYTL Trigger: CAAAGTATAACACCTTTGGAGAGGCTCTGAAGCAGCCTGATGGCATCGCTGTGGTTGGCATTTTCCTGAAGATAGGACGGGAGAAAGGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR CAA 90 bp | ATGCAAGCTCTTGGCTTCAGTGTTGACATTCCCTCCTTCCTGTTCCAGGAACCACTGCAGGTCTTCCCATaGTTCAGGATGGTCTTAGCA | + |
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Preference number: 5 (lower is better) Translates to: MQALGFSVDIPSFLFQEPLQVFP*FRMVLA Trigger: TGCTAAGACCATCCTGAACAATGGGAAGACCTGCAG...TGGTTCCTGGAACAGGAAGGAGGGAATGTCAACACTGAAGCCAAGAGCTTGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR CAA 90 bp | GAAAGTAGGAGTGCTGAGATTCTGAGTCTAATATGCTCAGTGAGCCACTGTTCTCCAGTGAAGATGGAATaGGCGAAGTCGGTAGGGTCC | + |
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Preference number: 5 (lower is better) Translates to: ESRSAEILSLICSVSHCSPVKME*AKSVGS Trigger: GGACCCTACCGACTTCGCCAATTCCATCTTCACTGG...AGAACAGTGGCTCACTGAGCATATTAGACTCAGAATCTCAGCACTCCTACTTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS TCA 90 bp | CAGAGAGGGGTCATGCTTGATGTCTTTAGTATGCAGTTCAATGGGTaGCTGGTTGTCCCCTTTGGCAATTGGATAAAGTTCATGCCAGTG | + |
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Preference number: 5 (lower is better) Translates to: QRGVMLDVFSMQFNG*LVVPFGNWIKFMPV Trigger: CACTGGCATGAACTTTATCCAATTGCCAAAGGGGACAACCAGTCACCCATTGAACTGCATACTAAAGACATCAAGCATGACCCCTCTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR CAA 90 bp | AGTAGGAGTGCTGAGATTCTGAGTCTAATATGCTCAGTGAGCCACTGTTCTCTATGTCCCCTTTGGCAATaGGATAAAGTTCATGCCAGT | + |
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Preference number: 5 (lower is better) Translates to: SRSAEILSLICSVSHCSLCPLWQ*DKVHAS Trigger: ACTGGCATGAACTTTATCCAATTGCCAAAGGGGACA...TAGAGAACAGTGGCTCACTGAGCATATTAGACTCAGAATCTCAGCACTCCTACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR CAA 90 bp | AGGAGTGCTGAGATTCTGAGTCTAATATGCTCAGTGAGCCACTGTTCTCTATCGCAAAGGTGTTATACTTaGGATTCCAGTGAACCAGGT | + |
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Preference number: 5 (lower is better) Translates to: RSAEILSLICSVSHCSLSQRCYT*DSSEPG Trigger: ACCTGGTTCACTGGAATCCAAAGTATAACACCTTTG...CGATAGAGAACAGTGGCTCACTGAGCATATTAGACTCAGAATCTCAGCACTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS-3UTR CAA 90 bp | CTCAGTGAGCCACTGTTCTCTATCGCTATTTTTCCATCTATTTCTTCCTCACTGCCCTTCGTCTTAATTTaGTCCAGGGCATCAAGAAGA | + |
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Preference number: 5 (lower is better) Translates to: LSEPLFSIAIFPSISSSLPFVLI*SRASRR Trigger: TCTTCTTGATGCCCTGGACAAAATTAAGACGAAGGG...CAGTGAGGAAGAAATAGATGGAAAAATAGCGATAGAGAACAGTGGCTCACTGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS CCA 72 bp | TCCCCACCAGAGGCACCGGGGGCTCATTCTCTGCGCTaGAGAAGAGGCTGCGCAGCTTGGCCATCTGGTCTG | + |
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Preference number: 6 (lower is better) Translates to: SPPEAPGAHSLR*RRGCAAWPSGL Trigger: CAGACCAGATGGCCAAGCTGCGCAGCCTCTTCTCCAGCGCAGAGAATGAGCCCCCGGTGCCTCTGGTGGGGA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS GCA 72 bp | CCAATTCCCCACCAGAGGCACCGGGGGCTCATTCTCTaGGCTGGAGAAGAGGCTGCGCAGCTTGGCCATCTG | + |
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Preference number: 6 (lower is better) Translates to: PIPHQRHRGLIL*AGEEAAQLGHL Trigger: CAGATGGCCAAGCTGCGCAGCCTCTTCTCCAGCGCAGAGAATGAGCCCCCGGTGCCTCTGGTGGGGAATTGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS CAA 90 bp | GGCACCGGGGGCTCATTCTCTGCGCTGGAGAAGAGGCTGCGCAGCTaGGCCATCTGGTCTGAGCTCACAGTCATGGGCTCTTTGAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: GTGGSFSALEKRLRS*AIWSELTVMGSLSS Trigger: GCTGCTCAAAGAGCCCATGACTGTGAGCTCAGACCAGATGGCCAAGCTGCGCAGCCTCTTCTCCAGCGCAGAGAATGAGCCCCCGGTGCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS TCA 72 bp | GCAGCCACACAATGCACTCCTCGCAGGGCGGCGTGGTaGAGGAGCCGTGATAGGTCCAATAGTCCCGGCAAG | + |
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Preference number: 6 (lower is better) Translates to: AATQCTPRRAAW*RSRDRSNSPGK Trigger: CTTGCCGGGACTATTGGACCTATCACGGCTCCTTCACCACGCCGCCCTGCGAGGAGTGCATTGTGTGGCTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS GCA 72 bp | GCACCGGGGGCTCATTCTCTGCGCTGGAGAAGAGGCTaGGCAGCTTGGCCATCTGGTCTGAGCTCACAGTCA | + |
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Preference number: 6 (lower is better) Translates to: APGAHSLRWRRG*AAWPSGLSSQS Trigger: TGACTGTGAGCTCAGACCAGATGGCCAAGCTGCGCAGCCTCTTCTCCAGCGCAGAGAATGAGCCCCCGGTGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS CCA 72 bp | GCTCATTCTCTGCGCTGGAGAAGAGGCTGCGCAGCTTaGCCATCTGGTCTGAGCTCACAGTCATGGGCTCTT | + |
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Preference number: 6 (lower is better) Translates to: AHSLRWRRGCAA*PSGLSSQSWAL Trigger: AAGAGCCCATGACTGTGAGCTCAGACCAGATGGCCAAGCTGCGCAGCCTCTTCTCCAGCGCAGAGAATGAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS TCA 72 bp | CAGGATGGTCTTAGCAGAGCCAGGGTCATAAGATGCTaGCCAGGGCTGCAGAGAGGGGTCATGCTTGATGTC | + |
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Preference number: 6 (lower is better) Translates to: QDGLSRARVIRC*PGLQRGVMLDV Trigger: GACATCAAGCATGACCCCTCTCTGCAGCCCTGGTCAGCATCTTATGACCCTGGCTCTGCTAAGACCATCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS TCA 72 bp | ATAGGTCCAATAGTCCCGGCAAGCAGGGAACAGGCATaGTGGGTCAAAGTGTGTAAAAGGGGCCTCCTTGCC | + |
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Preference number: 6 (lower is better) Translates to: IGPIVPASREQA*WVKVCKRGLLA Trigger: GGCAAGGAGGCCCCTTTTACACACTTTGACCCATCATGCCTGTTCCCTGCTTGCCGGGACTATTGGACCTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS GCA 72 bp | CCCGTCCTATCTTCAGGAAAATGCCAACCACAGCGATaGCATCAGGCTGCTTCAGAGCCTCTCCAAAGGTGT | + |
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Preference number: 6 (lower is better) Translates to: PVLSSGKCQPQR*HQAASEPLQRC Trigger: ACACCTTTGGAGAGGCTCTGAAGCAGCCTGATGGCATCGCTGTGGTTGGCATTTTCCTGAAGATAGGACGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS CAA 72 bp | TGTGTAAAAGGGGCCTCCTTGCCCTTCGTCTTAATTTaGTCCAGGGCATCAAGAAGAATCTGGAACTCGCCT | + |
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Preference number: 6 (lower is better) Translates to: CVKGASLPFVLI*SRASRRIWNSP Trigger: AGGCGAGTTCCAGATTCTTCTTGATGCCCTGGACAAAATTAAGACGAAGGGCAAGGAGGCCCCTTTTACACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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| CDS TCA 72 bp | GTCATGCTTGATGTCTTTAGTATGCAGTTCAATGGGTaGCTGGTTGTCCCCTTTGGCAATTGGATAAAGTTC | + |
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Preference number: 6 (lower is better) Translates to: VMLDVFSMQFNG*LVVPFGNWIKF Trigger: GAACTTTATCCAATTGCCAAAGGGGACAACCAGTCACCCATTGAACTGCATACTAAAGACATCAAGCATGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029076.6 |
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