Pregenerated sensors for CAR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027562Ensembl transcript IDs: ENSMUST00000029078.9, ENSMUST00000192609.6
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCCATGTCTGCTCTTTGCATTGCGCTGCCGTGGCAGAGAAAAGATaGCCTAAGTTGACCACTGGCCTGCCACTGTGCTGCCACCACATG | + |
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Preference number: 1 (lower is better) Translates to: GHVCSLHCAAVAEKR*PKLTTGLPLCCHHM Trigger: CATGTGGTGGCAGCACAGTGGCAGGCCAGTGGTCAACTTAGGGCATCTTTTCTCTGCCACGGCAGCGCAATGCAAAGAGCAGACATGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| 3UTR-3UTR GCA 90 bp | GAGTATTCATTATCCTATGGCTGTGAAGAGAAGCAAGAGGCCATGTCTGCTCTTGTGGCAGAGAAAAGATaGCCTAAGTTGACCACTGGC | + |
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Preference number: 2 (lower is better) Translates to: EYSLSYGCEEKQEAMSALVAEKR*PKLTTG Trigger: GCCAGTGGTCAACTTAGGGCATCTTTTCTCTGCCAC...AAGAGCAGACATGGCCTCTTGCTTCTCTTCACAGCCATAGGATAATGAATACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| 3UTR-3UTR GCA 90 bp | GAGTATTCATTATCCTATGGCTGTGAAGAGAAGCAAGAGGCCATGTCTGCTCTTGAGACACCTGGGTCTTaGTTTTCACATTTTGTTAGT | + |
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Preference number: 2 (lower is better) Translates to: EYSLSYGCEEKQEAMSALETPGS*FSHFVS Trigger: ACTAACAAAATGTGAAAAGCAAGACCCAGGTGTCTC...AAGAGCAGACATGGCCTCTTGCTTCTCTTCACAGCCATAGGATAATGAATACTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| 3UTR GCA 72 bp | AGATGCCCTAAGTTGACCACTGGCCTGCCACTGTGCTaGCACCACATGAGACACCTGGGTCTTGCTTTTCAC | + |
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Preference number: 3 (lower is better) Translates to: RCPKLTTGLPLC*HHMRHLGLAFH Trigger: GTGAAAAGCAAGACCCAGGTGTCTCATGTGGTGGCAGCACAGTGGCAGGCCAGTGGTCAACTTAGGGCATCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| 3UTR-3UTR CAA 90 bp | GAGTATTCATTATCCTATGGCTGTGAAGAGAAGCAAGAGGCCATGTCTGCTCTTGAGAGGCGGTCACACTaGTGCCCTTCGGACCCCTGC | + |
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Preference number: 3 (lower is better) Translates to: EYSLSYGCEEKQEAMSALERRSH*CPSDPC Trigger: GCAGGGGTCCGAAGGGCACAAGTGTGACCGCCTCTC...AAGAGCAGACATGGCCTCTTGCTTCTCTTCACAGCCATAGGATAATGAATACTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| 3UTR GCA 72 bp | AAAAGATGCCCTAAGTTGACCACTGGCCTGCCACTGTaGTGCCACCACATGAGACACCTGGGTCTTGCTTTT | + |
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Preference number: 3 (lower is better) Translates to: KRCPKLTTGLPL*CHHMRHLGLAF Trigger: AAAAGCAAGACCCAGGTGTCTCATGTGGTGGCAGCACAGTGGCAGGCCAGTGGTCAACTTAGGGCATCTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR TCA 90 bp | AGCTACAGAGAGGCGGTCACACTTGTGCCCTTCGGACCCCTGCTGCAGGGTTGTAGGAGTGGCCGTTGTTaGCAATGCTCTTGGACGCAG | + |
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Preference number: 4 (lower is better) Translates to: SYREAVTLVPFGPLLQGCRSGRC*QCSWTQ Trigger: CTGCGTCCAAGAGCATTGTCAACAACGGCCACTCCT...ACAACCCTGCAGCAGGGGTCCGAAGGGCACAAGTGTGACCGCCTCTCTGTAGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR GCA 90 bp | AGCTACAGAGAGGCGGTCACACTTGTGCCCTTCGGACCCCTGCTGCAGGGTTGTTTCTCTGGTCCGTTGTaGTTGCTGTATCCCCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: SYREAVTLVPFGPLLQGCFSGPL*LLYPQW Trigger: CCACTGGGGATACAGCAAGCACAACGGACCAGAGAA...ACAACCCTGCAGCAGGGGTCCGAAGGGCACAAGTGTGACCGCCTCTCTGTAGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR TCA 90 bp | AGCTACAGAGAGGCGGTCACACTTGTGCCCTTCGGACCCCTGCTGCAGGGTTGTAGCACTGCATTGTCCTaGGAGTCATCAAACTCAACG | + |
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Preference number: 4 (lower is better) Translates to: SYREAVTLVPFGPLLQGCSTALS*ESSNST Trigger: CGTTGAGTTTGATGACTCTCAGGACAATGCAGTGCT...ACAACCCTGCAGCAGGGGTCCGAAGGGCACAAGTGTGACCGCCTCTCTGTAGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR GCA 90 bp | TCGGGATCCAAATCACCCAGCCTAACTGTGCTTAGCTACAGAGAGGCGGTCACAATGTCCACAGGGGACTaGCGGTCTCCATTGGCAATG | + |
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Preference number: 4 (lower is better) Translates to: SGSKSPSLTVLSYREAVTMSTGD*RSPLAM Trigger: CATTGCCAATGGAGACCGGCAGTCCCCTGTGGACAT...TGTGACCGCCTCTCTGTAGCTAAGCACAGTTAGGCTGGGTGATTTGGATCCCGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR CCA 90 bp | TCGGGATCCAAATCACCCAGCCTAACTGTGCTTAGCTACAGAGAGGCGGTCACAACTGCCGGTCTCCATTaGCAATGGGGAAGTCCTTGT | + |
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Preference number: 4 (lower is better) Translates to: SGSKSPSLTVLSYREAVTTAGLH*QWGSPC Trigger: ACAAGGACTTCCCCATTGCCAATGGAGACCGGCAGT...TGTGACCGCCTCTCTGTAGCTAAGCACAGTTAGGCTGGGTGATTTGGATCCCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR GCA 90 bp | CTGCCACCACATGAGACACCTGGGTCTTGCTTTTCACATTTTGTTAGTAAGCACCTGGTCCGTTGTGCTTaGTGTATCCCCAGTGGTGGG | + |
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Preference number: 4 (lower is better) Translates to: LPPHETPGSCFSHFVSKHLVRCA*CIPSGG Trigger: CCCACCACTGGGGATACAGCAAGCACAACGGACCAG...GTGCTTACTAACAAAATGTGAAAAGCAAGACCCAGGTGTCTCATGTGGTGGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR GCA 90 bp | TCGGGATCCAAATCACCCAGCCTAACTGTGCTTAGCTACAGAGAGGCGGTCACATTTTTGTTCACAGTGTaGTCAGAGCCCTGGCCATCA | + |
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Preference number: 4 (lower is better) Translates to: SGSKSPSLTVLSYREAVTFLFTV*SEPWPS Trigger: TGATGGCCAGGGCTCTGAGCACACTGTGAACAAAAA...TGTGACCGCCTCTCTGTAGCTAAGCACAGTTAGGCTGGGTGATTTGGATCCCGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR TCA 90 bp | ACAGGCCTGAGTATTCATTATCCTATGGCTGTGAAGAGAAGCAAGAGGCCATGTGCCCTGGCCATCAGATaGGCCCCAGTGAAAGTGAAA | + |
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Preference number: 4 (lower is better) Translates to: TGLSIHYPMAVKRSKRPCALAIR*APVKVK Trigger: TTTCACTTTCACTGGGGCTCATCTGATGGCCAGGGC...ACATGGCCTCTTGCTTCTCTTCACAGCCATAGGATAATGAATACTCAGGCCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR TCA 90 bp | AACAGGCCTGAGTATTCATTATCCTATGGCTGTGAAGAGAAGCAAGAGGCCATGCTATTCTTTAGCGGCTaGGCTGGACGCCAGTTGTCC | + |
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Preference number: 4 (lower is better) Translates to: NRPEYSLSYGCEEKQEAMLFFSG*AGRQLS Trigger: GGACAACTGGCGTCCAGCTCAGCCGCTAAAGAATAG...CATGGCCTCTTGCTTCTCTTCACAGCCATAGGATAATGAATACTCAGGCCTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR GCA 90 bp | CTGCCACCACATGAGACACCTGGGTCTTGCTTTTCACATTTTGTTAGTAAGCACTGTAGGGCAGGGTCATaGTGGGCAGTTGCTGTGTCA | + |
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Preference number: 4 (lower is better) Translates to: LPPHETPGSCFSHFVSKHCRAGS*WAVAVS Trigger: TGACACAGCAACTGCCCAGCATGACCCTGCCCTACA...GTGCTTACTAACAAAATGTGAAAAGCAAGACCCAGGTGTCTCATGTGGTGGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR GCA 90 bp | AACAGGCCTGAGTATTCATTATCCTATGGCTGTGAAGAGAAGCAAGAGGCCATGATGGGGAAGTCCTTGTaGCAGTTCTCTGGTCCGTTG | + |
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Preference number: 4 (lower is better) Translates to: NRPEYSLSYGCEEKQEAMMGKSL*QFSGPL Trigger: CAACGGACCAGAGAACTGGCACAAGGACTTCCCCAT...CATGGCCTCTTGCTTCTCTTCACAGCCATAGGATAATGAATACTCAGGCCTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR GCA 90 bp | ACAGGCCTGAGTATTCATTATCCTATGGCTGTGAAGAGAAGCAAGAGGCCATGTGTCATGCTGGGCAGTTaGTGTGTCAATGTCCACAGG | + |
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Preference number: 4 (lower is better) Translates to: TGLSIHYPMAVKRSKRPCVMLGS*CVNVHR Trigger: CCTGTGGACATTGACACAGCAACTGCCCAGCATGAC...ACATGGCCTCTTGCTTCTCTTCACAGCCATAGGATAATGAATACTCAGGCCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR GCA 90 bp | CTAACTGTGCTTAGCTACAGAGAGGCGGTCACACTTGTGCCCTTCGGACCCCTGTTTAATGGAATGCAGTaGTTCAAGGACTTTCTGAAG | + |
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Preference number: 4 (lower is better) Translates to: LTVLSYREAVTLVPFGPLFNGMQ*FKDFLK Trigger: CTTCAGAAAGTCCTTGAAGCACTGCATTCCATTAAA...CAGGGGTCCGAAGGGCACAAGTGTGACCGCCTCTCTGTAGCTAAGCACAGTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR CCA 90 bp | CTGCCACCACATGAGACACCTGGGTCTTGCTTTTCACATTTTGTTAGTAAGCACGGTCTCCATTGGCAATaGGGAAGTCCTTGTGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: LPPHETPGSCFSHFVSKHGLHWQ*GSPCAS Trigger: ACTGGCACAAGGACTTCCCCATTGCCAATGGAGACC...GTGCTTACTAACAAAATGTGAAAAGCAAGACCCAGGTGTCTCATGTGGTGGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR GCA 90 bp | CTGCCACCACATGAGACACCTGGGTCTTGCTTTTCACATTTTGTTAGTAAGCACGCCAATCCATCCGGTTaGTGCACAGCTTTTCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: LPPHETPGSCFSHFVSKHANPSG*CTAFPK Trigger: CTTTGGAAAAGCTGTGCAGCAACCGGATGGATTGGC...GTGCTTACTAACAAAATGTGAAAAGCAAGACCCAGGTGTCTCATGTGGTGGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR TCA 90 bp | ACAGGCCTGAGTATTCATTATCCTATGGCTGTGAAGAGAAGCAAGAGGCCATGTCTTTATCATAAGATATaGGCAGAGGCTGTAGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: TGLSIHYPMAVKRSKRPCLYHKI*AEAVGQ Trigger: CTGCCCTACAGCCTCTGCTCATATCTTATGATAAAG...ACATGGCCTCTTGCTTCTCTTCACAGCCATAGGATAATGAATACTCAGGCCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR CCA 90 bp | GAGTATTCATTATCCTATGGCTGTGAAGAGAAGCAAGAGGCCATGTCTGCTCTTCAAAGTCCCCATATTTaGTGTTCCAGTGAACCAAGT | + |
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Preference number: 4 (lower is better) Translates to: EYSLSYGCEEKQEAMSALQSPHI*CSSEPS Trigger: ACTTGGTTCACTGGAACACCAAATATGGGGACTTTG...AAGAGCAGACATGGCCTCTTGCTTCTCTTCACAGCCATAGGATAATGAATACTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR GCA 90 bp | GAGTATTCATTATCCTATGGCTGTGAAGAGAAGCAAGAGGCCATGTCTGCTCTTTTTGTTTTAATGGAATaGAGTGCTTCAAGGACTTTC | + |
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Preference number: 4 (lower is better) Translates to: EYSLSYGCEEKQEAMSALFVLME*SASRTF Trigger: GAAAGTCCTTGAAGCACTGCATTCCATTAAAACAAA...AAGAGCAGACATGGCCTCTTGCTTCTCTTCACAGCCATAGGATAATGAATACTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS CCA 90 bp | GGGCAGTTGCTGTGTCAATGTCCACAGGGGACTGCCGGTCTCCATTaGCAATGGGGAAGTCCTTGTGCCAGTTCTCTGGTCCGTTGTGCT | + |
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Preference number: 5 (lower is better) Translates to: GQLLCQCPQGTAGLH*QWGSPCASSLVRCA Trigger: AGCACAACGGACCAGAGAACTGGCACAAGGACTTCCCCATTGCCAATGGAGACCGGCAGTCCCCTGTGGACATTGACACAGCAACTGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029078.9 ENSMUST00000192609.6 |
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| CDS CCA 90 bp | TTGCTGTGTCAATGTCCACAGGGGACTGCCGGTCTCCATTGGCAATaGGGAAGTCCTTGTGCCAGTTCTCTGGTCCGTTGTGCTTGCTGT | + |
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Preference number: 5 (lower is better) Translates to: LLCQCPQGTAGLHWQ*GSPCASSLVRCACC Trigger: ACAGCAAGCACAACGGACCAGAGAACTGGCACAAGGACTTCCCCATTGCCAATGGAGACCGGCAGTCCCCTGTGGACATTGACACAGCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029078.9 ENSMUST00000192609.6 |
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| CDS TCA 90 bp | GCTTCTTCAGCATCCCCCTCCTCATTGAAGTTCAGCGTACGGAAATaGGACATCTGCTCGCTGCTGACAGTAATGGGCTCCCTGAGCACG | + |
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Preference number: 5 (lower is better) Translates to: ASSASPSSLKFSVRK*DICSLLTVMGSLST Trigger: CGTGCTCAGGGAGCCCATTACTGTCAGCAGCGAGCAGATGTCTCATTTCCGTACGCTGAACTTCAATGAGGAGGGGGATGCTGAAGAAGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR CAA 90 bp | TCGGGATCCAAATCACCCAGCCTAACTGTGCTTAGCTACAGAGAGGCGGTCACAGGTCATGCTGGGCAGTaGCTGTGTCAATGTCCACAG | + |
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Preference number: 5 (lower is better) Translates to: SGSKSPSLTVLSYREAVTGHAGQ*LCQCPQ Trigger: CTGTGGACATTGACACAGCAACTGCCCAGCATGACC...TGTGACCGCCTCTCTGTAGCTAAGCACAGTTAGGCTGGGTGATTTGGATCCCGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR CAA 90 bp | CTAACTGTGCTTAGCTACAGAGAGGCGGTCACACTTGTGCCCTTCGGACCCCTGAGCCAATCCATCCGGTaGCTGCACAGCTTTTCCAAA | + |
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Preference number: 5 (lower is better) Translates to: LTVLSYREAVTLVPFGPLSQSIR*LHSFSK Trigger: TTTGGAAAAGCTGTGCAGCAACCGGATGGATTGGCT...CAGGGGTCCGAAGGGCACAAGTGTGACCGCCTCTCTGTAGCTAAGCACAGTTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR CAA 90 bp | CTGCCACCACATGAGACACCTGGGTCTTGCTTTTCACATTTTGTTAGTAAGCACGCAATGGGGAAGTCCTaGTGCCAGTTCTCTGGTCCG | + |
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Preference number: 5 (lower is better) Translates to: LPPHETPGSCFSHFVSKHAMGKS*CQFSGP Trigger: CGGACCAGAGAACTGGCACAAGGACTTCCCCATTGC...GTGCTTACTAACAAAATGTGAAAAGCAAGACCCAGGTGTCTCATGTGGTGGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR CAA 90 bp | TGCTGCCACCACATGAGACACCTGGGTCTTGCTTTTCACATTTTGTTAGTAAGCGACTGCCGGTCTCCATaGGCAATGGGGAAGTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: CCHHMRHLGLAFHILLVSDCRSP*AMGKSL Trigger: CAAGGACTTCCCCATTGCCAATGGAGACCGGCAGTC...GCTTACTAACAAAATGTGAAAAGCAAGACCCAGGTGTCTCATGTGGTGGCAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS-3UTR CAA 90 bp | CTGCCACCACATGAGACACCTGGGTCTTGCTTTTCACATTTTGTTAGTAAGCACGCATCCCCCTCCTCATaGAAGTTCAGCGTACGGAAA | + |
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Preference number: 5 (lower is better) Translates to: LPPHETPGSCFSHFVSKHASPSS*KFSVRK Trigger: TTTCCGTACGCTGAACTTCAATGAGGAGGGGGATGC...GTGCTTACTAACAAAATGTGAAAAGCAAGACCCAGGTGTCTCATGTGGTGGCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS GCA 72 bp | GACTGCCGGTCTCCATTGGCAATGGGGAAGTCCTTGTaGCAGTTCTCTGGTCCGTTGTGCTTGCTGTATCCC | + |
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Preference number: 6 (lower is better) Translates to: DCRSPLAMGKSL*QFSGPLCLLYP Trigger: GGGATACAGCAAGCACAACGGACCAGAGAACTGGCACAAGGACTTCCCCATTGCCAATGGAGACCGGCAGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029078.9 ENSMUST00000192609.6 |
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| CDS CCA 72 bp | CAATGTCCACAGGGGACTGCCGGTCTCCATTGGCAATaGGGAAGTCCTTGTGCCAGTTCTCTGGTCCGTTGT | + |
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Preference number: 6 (lower is better) Translates to: QCPQGTAGLHWQ*GSPCASSLVRC Trigger: ACAACGGACCAGAGAACTGGCACAAGGACTTCCCCATTGCCAATGGAGACCGGCAGTCCCCTGTGGACATTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029078.9 ENSMUST00000192609.6 |
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| CDS CCA 72 bp | CTGTGTCAATGTCCACAGGGGACTGCCGGTCTCCATTaGCAATGGGGAAGTCCTTGTGCCAGTTCTCTGGTC | + |
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Preference number: 6 (lower is better) Translates to: LCQCPQGTAGLH*QWGSPCASSLV Trigger: GACCAGAGAACTGGCACAAGGACTTCCCCATTGCCAATGGAGACCGGCAGTCCCCTGTGGACATTGACACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029078.9 ENSMUST00000192609.6 |
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| CDS CAA 72 bp | GGGGACTGCCGGTCTCCATTGGCAATGGGGAAGTCCTaGTGCCAGTTCTCTGGTCCGTTGTGCTTGCTGTAT | + |
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Preference number: 6 (lower is better) Translates to: GDCRSPLAMGKS*CQFSGPLCLLY Trigger: ATACAGCAAGCACAACGGACCAGAGAACTGGCACAAGGACTTCCCCATTGCCAATGGAGACCGGCAGTCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029078.9 ENSMUST00000192609.6 |
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| CDS TCA 72 bp | GCATCCCCCTCCTCATTGAAGTTCAGCGTACGGAAATaGGACATCTGCTCGCTGCTGACAGTAATGGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: ASPSSLKFSVRK*DICSLLTVMGS Trigger: GGAGCCCATTACTGTCAGCAGCGAGCAGATGTCTCATTTCCGTACGCTGAACTTCAATGAGGAGGGGGATGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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| CDS TCA 72 bp | TCACTGAGGGGTCCTCCTTTCAGCACTGCATTGTCCTaGGAGTCATCAAACTCAACGTTAAAGGAGTGGCCG | + |
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Preference number: 6 (lower is better) Translates to: SLRGPPFSTALS*ESSNSTLKEWP Trigger: CGGCCACTCCTTTAACGTTGAGTTTGATGACTCTCAGGACAATGCAGTGCTGAAAGGAGGACCCCTCAGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029078.9 ENSMUST00000192609.6 |
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| CDS TCA 72 bp | AGTGAAAGTGAAACTGGATCAATCTGTAGGAGTCACTaGGGGGTCCTCCTTTCAGCACTGCATTGTCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: SESETGSICRSH*GVLLSALHCPE Trigger: CTCAGGACAATGCAGTGCTGAAAGGAGGACCCCTCAGTGACTCCTACAGATTGATCCAGTTTCACTTTCACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029078.9 ENSMUST00000192609.6 |
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| CDS TCA 72 bp | TTAAAGGACGCTTTGATCTTTCTATTCTTTAGCGGCTaGGCTGGACGCCAGTTGTCCACCATCGCTTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: LKDALIFLFFSG*AGRQLSTIASS Trigger: TGAAGAAGCGATGGTGGACAACTGGCGTCCAGCTCAGCCGCTAAAGAATAGAAAGATCAAAGCGTCCTTTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029078.9 |
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