Pregenerated sensors for CAR13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027555Ensembl transcript IDs: ENSMUST00000029071.9
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | AAGCTGTTCACCAGCTCGGGGCAGTTCTGCTGCAGTGGTATCGTATACATTGCTACTTCTGGTTTTCTCTaGCGTGCCAGAGGTGCTGGA | + |
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Preference number: 2 (lower is better) Translates to: KLFTSSGQFCCSGIVYIATSGFL*RARGAG Trigger: TCCAGCACCTCTGGCACGGCAGAGAAAACCAGAAGT...AGCAATGTATACGATACCACTGCAGCAGAACTGCCCCGAGCTGGTGAACAGCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| 3UTR-3UTR CCA 90 bp | AAGCTGTTCACCAGCTCGGGGCAGTTCTGCTGCAGTGGTATCGTATACATTGCTCCCATATTTAGCAATTaGACATACATTGGGGCAAAT | + |
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Preference number: 2 (lower is better) Translates to: KLFTSSGQFCCSGIVYIAPIFSN*TYIGAN Trigger: ATTTGCCCCAATGTATGTCCAATTGCTAAATATGGG...AGCAATGTATACGATACCACTGCAGCAGAACTGCCCCGAGCTGGTGAACAGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| 3UTR-3UTR GCA 90 bp | CCTTACAATGGCAAAGCAAAAGGAATGTGGTGCCTGTCTTCCTTCAATGAATACGCTCTTCCTAGAAAATaGAATGAATGGCTTAGGCAT | + |
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Preference number: 2 (lower is better) Translates to: PYNGKAKGMWCLSSFNEYALPRK*NEWLRH Trigger: ATGCCTAAGCCATTCATTGCATTTTCTAGGAAGAGC...GTATTCATTGAAGGAAGACAGGCACCACATTCCTTTTGCTTTGCCATTGTAAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| 3UTR-3UTR CCA 90 bp | TTATTGAGTATAGAATCACCTTACAATGGCAAAGCAAAAGGAATGTGGTGCCTGAGAAAATGCAATGAATaGCTTAGGCATTTATGCAAG | + |
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Preference number: 2 (lower is better) Translates to: LLSIESPYNGKAKGMWCLRKCNE*LRHLCK Trigger: CTTGCATAAATGCCTAAGCCATTCATTGCATTTTCT...CAGGCACCACATTCCTTTTGCTTTGCCATTGTAAGGTGATTCTATACTCAATAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| 3UTR GCA 72 bp | GTTTGTAGGAAGCTGTTCACCAGCTCGGGGCAGTTCTaGTGCAGTGGTATCGTATACATTGCTGGTCTGAAT | + |
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Preference number: 3 (lower is better) Translates to: VCRKLFTSSGQF*CSGIVYIAGLN Trigger: ATTCAGACCAGCAATGTATACGATACCACTGCAGCAGAACTGCCCCGAGCTGGTGAACAGCTTCCTACAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| 3UTR GCA 72 bp | ATTTCAGACTTCTGGTTTTCTCTGCCGTGCCAGAGGTaGTGGACAAGTAGAATCCACAAACGTGAAATTCTC | + |
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Preference number: 3 (lower is better) Translates to: ISDFWFSLPCQR*WTSRIHKREIL Trigger: GAGAATTTCACGTTTGTGGATTCTACTTGTCCAGCACCTCTGGCACGGCAGAGAAAACCAGAAGTCTGAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| 3UTR-3UTR CAA 90 bp | TTATTGAGTATAGAATCACCTTACAATGGCAAAGCAAAAGGAATGTGGTGCCTGCTCGAAAAGCCATTATaGGAATGTCTGAGTTCCGTT | + |
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Preference number: 3 (lower is better) Translates to: LLSIESPYNGKAKGMWCLLEKPL*ECLSSV Trigger: AACGGAACTCAGACATTCCAATAATGGCTTTTCGAG...CAGGCACCACATTCCTTTTGCTTTGCCATTGTAAGGTGATTCTATACTCAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| 3UTR-3UTR CAA 90 bp | AAATGCAATGAATGGCTTAGGCATTTATGCAAGACGTGGTTCATCTTTTTAATGGTAAGGCTGACATTATaGTCAGGAAGGCTGAAGCAG | + |
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Preference number: 3 (lower is better) Translates to: KCNEWLRHLCKTWFIFLMVRLTL*SGRLKQ Trigger: CTGCTTCAGCCTTCCTGACAATAATGTCAGCCTTAC...CATTAAAAAGATGAACCACGTCTTGCATAAATGCCTAAGCCATTCATTGCATTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| 3UTR-3UTR CAA 90 bp | CATTGTTCTATCCTAGTCTGTGTGTGTTTTGTCTTATGTGCTATATTACAGTACGACTGTAAGAACTGCTaGTTTGGGAATAATATCAGT | + |
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Preference number: 3 (lower is better) Translates to: HCSILVCVCFVLCAILQYDCKNC*FGNNIS Trigger: ACTGATATTATTCCCAAACAAGCAGTTCTTACAGTC...GTACTGTAATATAGCACATAAGACAAAACACACACAGACTAGGATAGAACAATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS-3UTR TCA 90 bp | AAGCTGTTCACCAGCTCGGGGCAGTTCTGCTGCAGTGGTATCGTATACATTGCTGCCATGATCATCTGCTaGCCCCCAGTGCAAATGGAA | + |
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Preference number: 4 (lower is better) Translates to: KLFTSSGQFCCSGIVYIAAMIIC*PPVQME Trigger: TTCCATTTGCACTGGGGGTCAGCAGATGATCATGGC...AGCAATGTATACGATACCACTGCAGCAGAACTGCCCCGAGCTGGTGAACAGCTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS-3UTR GCA 90 bp | AAGCTGTTCACCAGCTCGGGGCAGTTCTGCTGCAGTGGTATCGTATACATTGCTTTCCAGTGGACAACATaGAGCTCTGCAGCATACCTC | + |
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Preference number: 4 (lower is better) Translates to: KLFTSSGQFCCSGIVYIAFQWTT*SSAAYL Trigger: GAGGTATGCTGCAGAGCTGCATGTTGTCCACTGGAA...AGCAATGTATACGATACCACTGCAGCAGAACTGCCCCGAGCTGGTGAACAGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS-3UTR TCA 90 bp | ATTATTGTCAGGAAGGCTGAAGCAGGTATACTTTGTGATTTTAATTACATCCCAACATGCTCTGAGCCATaGTCATCTGCTGACCCCCAG | + |
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Preference number: 4 (lower is better) Translates to: IIVRKAEAGILCDFNYIPTCSEP*SSADPQ Trigger: CTGGGGGTCAGCAGATGATCATGGCTCAGAGCATGT...TGGGATGTAATTAAAATCACAAAGTATACCTGCTTCAGCCTTCCTGACAATAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS-3UTR GCA 90 bp | CATTGTTCTATCCTAGTCTGTGTGTGTTTTGTCTTATGTGCTATATTACAGTACGACAACATGCAGCTCTaGAGCATACCTCACTCCGTC | + |
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Preference number: 4 (lower is better) Translates to: HCSILVCVCFVLCAILQYDNMQL*SIPHSV Trigger: GACGGAGTGAGGTATGCTGCAGAGCTGCATGTTGTC...GTACTGTAATATAGCACATAAGACAAAACACACACAGACTAGGATAGAACAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS-3UTR CCA 90 bp | TTGTCAGGAAGGCTGAAGCAGGTATACTTTGTGATTTTAATTACATCCCATATTATTCATTCCAGTGAATaGGACCGTTGTGCTCGCCGT | + |
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Preference number: 4 (lower is better) Translates to: LSGRLKQVYFVILITSHIIHSSE*DRCARR Trigger: ACGGCGAGCACAACGGTCCCATTCACTGGAATGAAT...AATATGGGATGTAATTAAAATCACAAAGTATACCTGCTTCAGCCTTCCTGACAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS-3UTR TCA 90 bp | CATTGTTCTATCCTAGTCTGTGTGTGTTTTGTCTTATGTGCTATATTACAGTACTCAATTGGAGACTGCTaGTCACCATCAGCAATAGGG | + |
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Preference number: 4 (lower is better) Translates to: HCSILVCVCFVLCAILQYSIGDC*SPSAIG Trigger: CCCTATTGCTGATGGTGATCAGCAGTCTCCAATTGA...GTACTGTAATATAGCACATAAGACAAAACACACACAGACTAGGATAGAACAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS-3UTR TCA 90 bp | TTATTGAGTATAGAATCACCTTACAATGGCAAAGCAAAAGGAATGTGGTGCCTGGCTGATGATTTTAGCTaGGGCAGGATCATACTTGAT | + |
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Preference number: 4 (lower is better) Translates to: LLSIESPYNGKAKGMWCLADDFS*GRIILD Trigger: ATCAAGTATGATCCTGCCTCAGCTAAAATCATCAGC...CAGGCACCACATTCCTTTTGCTTTGCCATTGTAAGGTGATTCTATACTCAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS-3UTR TCA 90 bp | ATTATTGTCAGGAAGGCTGAAGCAGGTATACTTTGTGATTTTAATTACATCCCACGTCAAAGTCAACGTTaGAGGAATGGCCACTATTGC | + |
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Preference number: 4 (lower is better) Translates to: IIVRKAEAGILCDFNYIPRQSQR*RNGHYC Trigger: GCAATAGTGGCCATTCCTTCAACGTTGACTTTGACG...TGGGATGTAATTAAAATCACAAAGTATACCTGCTTCAGCCTTCCTGACAATAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS-3UTR TCA 90 bp | ATTATTGTCAGGAAGGCTGAAGCAGGTATACTTTGTGATTTTAATTACATCCCAGTGATCTTTTGCAGTTaGGGATTGTGTTCCCCAATC | + |
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Preference number: 4 (lower is better) Translates to: IIVRKAEAGILCDFNYIPVIFCS*GLCSPI Trigger: GATTGGGGAACACAATCCTCAACTGCAAAAGATCAC...TGGGATGTAATTAAAATCACAAAGTATACCTGCTTCAGCCTTCCTGACAATAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS-3UTR TCA 90 bp | CATTGTTCTATCCTAGTCTGTGTGTGTTTTGTCTTATGTGCTATATTACAGTACACGGGTCAAAATTTGTaGACCGTGTTTGTTTACCCT | + |
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Preference number: 4 (lower is better) Translates to: HCSILVCVCFVLCAILQYTGQNL*TVFVYP Trigger: AGGGTAAACAAACACGGTTCACAAATTTTGACCCGT...GTACTGTAATATAGCACATAAGACAAAACACACACAGACTAGGATAGAACAATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS-3UTR TCA 90 bp | CATTGTTCTATCCTAGTCTGTGTGTGTTTTGTCTTATGTGCTATATTACAGTACTTAAAACAATCCACGTaGCACTCTCAAGAAGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: HCSILVCVCFVLCAILQYLKQST*HSQEEV Trigger: CACCTCTTCTTGAGAGTGTCACGTGGATTGTTTTAA...GTACTGTAATATAGCACATAAGACAAAACACACACAGACTAGGATAGAACAATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS-3UTR CCA 90 bp | CATTGTTCTATCCTAGTCTGTGTGTGTTTTGTCTTATGTGCTATATTACAGTACGGTTTTAATCTCAATTaGAGACTGCTGATCACCATC | + |
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Preference number: 4 (lower is better) Translates to: HCSILVCVCFVLCAILQYGFNLN*RLLITI Trigger: GATGGTGATCAGCAGTCTCCAATTGAGATTAAAACC...GTACTGTAATATAGCACATAAGACAAAACACACACAGACTAGGATAGAACAATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS-3UTR CCA 90 bp | AAATGCAATGAATGGCTTAGGCATTTATGCAAGACGTGGTTCATCTTTTTAATGTCAACGTTGAAGGAATaGCCACTATTGCTGATGATT | + |
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Preference number: 4 (lower is better) Translates to: KCNEWLRHLCKTWFIFLMSTLKE*PLLLMI Trigger: AATCATCAGCAATAGTGGCCATTCCTTCAACGTTGA...CATTAAAAAGATGAACCACGTCTTGCATAAATGCCTAAGCCATTCATTGCATTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS TCA 90 bp | CCCATCGGACTCATGAGCTGCCTCTACAAAGCTCGGGTATTTGTCTaGATTCCAGTGGACAACATGCAGCTCTGCAGCATACCTCACTCC | + |
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Preference number: 5 (lower is better) Translates to: PIGLMSCLYKARVFV*IPVDNMQLCSIPHS Trigger: GGAGTGAGGTATGCTGCAGAGCTGCATGTTGTCCACTGGAATTCAGACAAATACCCGAGCTTTGTAGAGGCAGCTCATGAGTCCGATGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS TCA 90 bp | CCAATCTGTAGAAATACTCCCAGGACAGCCAGCCCATCGGACTCATaGGCTGCCTCTACAAAGCTCGGGTATTTGTCTGAATTCCAGTGG | + |
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Preference number: 5 (lower is better) Translates to: PICRNTPRTASPSDS*AASTKLGYLSEFQW Trigger: CCACTGGAATTCAGACAAATACCCGAGCTTTGTAGAGGCAGCTCATGAGTCCGATGGGCTGGCTGTCCTGGGAGTATTTCTACAGATTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS-3UTR CAA 90 bp | AAGCTGTTCACCAGCTCGGGGCAGTTCTGCTGCAGTGGTATCGTATACATTGCTGAATCTGGCCAGCTGTaGAGAGCTGATACTTATAGG | + |
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Preference number: 5 (lower is better) Translates to: KLFTSSGQFCCSGIVYIAESGQL*RADTYR Trigger: CCTATAAGTATCAGCTCTCAACAGCTGGCCAGATTC...AGCAATGTATACGATACCACTGCAGCAGAACTGCCCCGAGCTGGTGAACAGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS CCA 90 bp | AGAACTGATTTGTCCTCCGTGTCGTCAAAGTCAACGTTGAAGGAATaGCCACTATTGCTGATGATTTTAGCTGAGGCAGGATCATACTTG | + |
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Preference number: 5 (lower is better) Translates to: RTDLSSVSSKSTLKE*PLLLMILAEAGSYL Trigger: CAAGTATGATCCTGCCTCAGCTAAAATCATCAGCAATAGTGGCCATTCCTTCAACGTTGACTTTGACGACACGGAGGACAAATCAGTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS-3UTR CAA 90 bp | CCTTACAATGGCAAAGCAAAAGGAATGTGGTGCCTGTCTTCCTTCAATGAATACACAAAGCTCGGGTATTaGTCTGAATTCCAGTGGACA | + |
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Preference number: 5 (lower is better) Translates to: PYNGKAKGMWCLSSFNEYTKLGY*SEFQWT Trigger: TGTCCACTGGAATTCAGACAAATACCCGAGCTTTGT...GTATTCATTGAAGGAAGACAGGCACCACATTCCTTTTGCTTTGCCATTGTAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS-3UTR CAA 90 bp | TTATTGAGTATAGAATCACCTTACAATGGCAAAGCAAAAGGAATGTGGTGCCTGAAGGAATGGCCACTATaGCTGATGATTTTAGCTGAG | + |
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Preference number: 5 (lower is better) Translates to: LLSIESPYNGKAKGMWCLKEWPL*LMILAE Trigger: CTCAGCTAAAATCATCAGCAATAGTGGCCATTCCTT...CAGGCACCACATTCCTTTTGCTTTGCCATTGTAAGGTGATTCTATACTCAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS-3UTR CAA 90 bp | AAATGCAATGAATGGCTTAGGCATTTATGCAAGACGTGGTTCATCTTTTTAATGTCGTCAAAGTCAACGTaGAAGGAATGGCCACTATTG | + |
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Preference number: 5 (lower is better) Translates to: KCNEWLRHLCKTWFIFLMSSKST*KEWPLL Trigger: CAATAGTGGCCATTCCTTCAACGTTGACTTTGACGA...CATTAAAAAGATGAACCACGTCTTGCATAAATGCCTAAGCCATTCATTGCATTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS-3UTR CAA 90 bp | TTGTCAGGAAGGCTGAAGCAGGTATACTTTGTGATTTTAATTACATCCCATATTAATATCAGTGATCTTTaGCAGTTGAGGATTGTGTTC | + |
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Preference number: 5 (lower is better) Translates to: LSGRLKQVYFVILITSHINISDL*QLRIVF Trigger: GAACACAATCCTCAACTGCAAAAGATCACTGATATT...AATATGGGATGTAATTAAAATCACAAAGTATACCTGCTTCAGCCTTCCTGACAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS TCA 72 bp | AGTGCAAATGGAACTGCCGCAACCTGTAGTTCCCAGTaGGAGGACCTCCACGCAGAACTGATTTGTCCTCCG | + |
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Preference number: 6 (lower is better) Translates to: SANGTAATCSSQ*EDLHAELICPP Trigger: CGGAGGACAAATCAGTTCTGCGTGGAGGTCCTCTCACTGGGAACTACAGGTTGCGGCAGTTCCATTTGCACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS CAA 90 bp | CCTCCACGCAGAACTGATTTGTCCTCCGTGTCGTCAAAGTCAACGTaGAAGGAATGGCCACTATTGCTGATGATTTTAGCTGAGGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: PPRRTDLSSVSSKST*KEWPLLLMILAEAG Trigger: TCCTGCCTCAGCTAAAATCATCAGCAATAGTGGCCATTCCTTCAACGTTGACTTTGACGACACGGAGGACAAATCAGTTCTGCGTGGAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS CCA 72 bp | TTGTCCTCCGTGTCGTCAAAGTCAACGTTGAAGGAATaGCCACTATTGCTGATGATTTTAGCTGAGGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: LSSVSSKSTLKE*PLLLMILAEAG Trigger: TCCTGCCTCAGCTAAAATCATCAGCAATAGTGGCCATTCCTTCAACGTTGACTTTGACGACACGGAGGACAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS TCA 72 bp | GTTGAAGGAATGGCCACTATTGCTGATGATTTTAGCTaGGGCAGGATCATACTTGATACTGAGAGGTCGGAG | + |
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Preference number: 6 (lower is better) Translates to: VEGMATIADDFS*GRIILDTERSE Trigger: CTCCGACCTCTCAGTATCAAGTATGATCCTGCCTCAGCTAAAATCATCAGCAATAGTGGCCATTCCTTCAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS CAA 90 bp | GAATGGCCACTATTGCTGATGATTTTAGCTGAGGCAGGATCATACTaGATACTGAGAGGTCGGAGTGAGGAGTCGTATTTCACTTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: EWPLLLMILAEAGSY*ILRGRSEESYFTSL Trigger: CAAAGAAGTGAAATACGACTCCTCACTCCGACCTCTCAGTATCAAGTATGATCCTGCCTCAGCTAAAATCATCAGCAATAGTGGCCATTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS CAA 90 bp | TTGTCCTCCGTGTCGTCAAAGTCAACGTTGAAGGAATGGCCACTATaGCTGATGATTTTAGCTGAGGCAGGATCATACTTGATACTGAGA | + |
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Preference number: 6 (lower is better) Translates to: LSSVSSKSTLKEWPL*LMILAEAGSYLILR Trigger: TCTCAGTATCAAGTATGATCCTGCCTCAGCTAAAATCATCAGCAATAGTGGCCATTCCTTCAACGTTGACTTTGACGACACGGAGGACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS CAA 72 bp | CTATTGCTGATGATTTTAGCTGAGGCAGGATCATACTaGATACTGAGAGGTCGGAGTGAGGAGTCGTATTTC | + |
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Preference number: 6 (lower is better) Translates to: LLLMILAEAGSY*ILRGRSEESYF Trigger: GAAATACGACTCCTCACTCCGACCTCTCAGTATCAAGTATGATCCTGCCTCAGCTAAAATCATCAGCAATAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS CAA 72 bp | GTGTCGTCAAAGTCAACGTTGAAGGAATGGCCACTATaGCTGATGATTTTAGCTGAGGCAGGATCATACTTG | + |
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Preference number: 6 (lower is better) Translates to: VSSKSTLKEWPL*LMILAEAGSYL Trigger: CAAGTATGATCCTGCCTCAGCTAAAATCATCAGCAATAGTGGCCATTCCTTCAACGTTGACTTTGACGACAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS CAA 72 bp | AGAACTGATTTGTCCTCCGTGTCGTCAAAGTCAACGTaGAAGGAATGGCCACTATTGCTGATGATTTTAGCT | + |
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Preference number: 6 (lower is better) Translates to: RTDLSSVSSKST*KEWPLLLMILA Trigger: AGCTAAAATCATCAGCAATAGTGGCCATTCCTTCAACGTTGACTTTGACGACACGGAGGACAAATCAGTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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| CDS TCA 72 bp | AAGATGATGGAAGCAAGCATAACGGGTCAAAATTTGTaGACCGTGTTTGTTTACCCTTTTCCTTTATGGAAT | + |
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Preference number: 6 (lower is better) Translates to: KMMEASITGQNL*TVFVYPFPLWN Trigger: ATTCCATAAAGGAAAAGGGTAAACAAACACGGTTCACAAATTTTGACCCGTTATGCTTGCTTCCATCATCTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029071.9 |
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