Pregenerated sensors for CAR11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003273Ensembl transcript IDs: ENSMUST00000003360.10, ENSMUST00000209796.2, ENSMUST00000210027.2
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGTCTCAGCGACCGTGAGGACCACCGTCCACATGCAGGCGGTAGTTaGGGCCTCGGCAGCGCCTCTCGGGATGCCGGGGGTCCCTGTTGC | + |
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Preference number: 1 (lower is better) Translates to: SLSDREDHRPHAGGS*GLGSASRDAGGPCC Trigger: GCAACAGGGACCCCCGGCATCCCGAGAGGCGCTGCCGAGGCCCCAACTACCGCCTGCATGTGGACGGTGGTCCTCACGGTCGCTGAGACT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209796.2 |
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| 3UTR-3UTR CCA 90 bp | CGGCAGCGCCTCTCGGGATGCCGGGGGTCCCTGTTGCCCCTCAAGGCTCTGTGGGGGCGTAATCCTCGTTaGGGAGTCTCAGCGACCGTG | + |
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Preference number: 2 (lower is better) Translates to: RQRLSGCRGSLLPLKALWGRNPR*GVSATV Trigger: CACGGTCGCTGAGACTCCCCAACGAGGATTACGCCC...CCACAGAGCCTTGAGGGGCAACAGGGACCCCCGGCATCCCGAGAGGCGCTGCCG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000209796.2 |
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| 3UTR-3UTR TCA 90 bp | GTGAGGACCACCGTCCACATGCAGGCGGTAGTTGGGGCCTCGGCAGCGCCTCTCGCCGGCCATTACCACTaGGGCTCTGGAAGATCTGGG | + |
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Preference number: 2 (lower is better) Translates to: VRTTVHMQAVVGASAAPLAGHYH*GSGRSG Trigger: CCCAGATCTTCCAGAGCCTCAGTGGTAATGGCCGGC...GAGAGGCGCTGCCGAGGCCCCAACTACCGCCTGCATGTGGACGGTGGTCCTCAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209796.2 |
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| 3UTR-3UTR CCA 90 bp | GACCACCGTCCACATGCAGGCGGTAGTTGGGGCCTCGGCAGCGCCTCTCGGGATCTCAGGGAGTGCATCTaGAGGGAGGTAATATTGAGA | + |
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Preference number: 2 (lower is better) Translates to: DHRPHAGGSWGLGSASRDLRECI*REVILR Trigger: TCTCAATATTACCTCCCTCCAGATGCACTCCCTGAG...ATCCCGAGAGGCGCTGCCGAGGCCCCAACTACCGCCTGCATGTGGACGGTGGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209796.2 |
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| 3UTR-3UTR GCA 90 bp | TTGGGGAGTCTCAGCGACCGTGAGGACCACCGTCCACATGCAGGCGGTAGTTGGAGGAGTCTCAGGGAGTaGATCTGGAGGGAGGTAATA | + |
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Preference number: 2 (lower is better) Translates to: LGSLSDREDHRPHAGGSWRSLRE*IWREVI Trigger: TATTACCTCCCTCCAGATGCACTCCCTGAGACTCCT...CCAACTACCGCCTGCATGTGGACGGTGGTCCTCACGGTCGCTGAGACTCCCCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209796.2 |
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| 3UTR CCA 72 bp | GACCGTGAGGACCACCGTCCACATGCAGGCGGTAGTTaGGGCCTCGGCAGCGCCTCTCGGGATGCCGGGGGT | + |
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Preference number: 3 (lower is better) Translates to: DREDHRPHAGGS*GLGSASRDAGG Trigger: ACCCCCGGCATCCCGAGAGGCGCTGCCGAGGCCCCAACTACCGCCTGCATGTGGACGGTGGTCCTCACGGTC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209796.2 |
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| 3UTR-3UTR CAA 90 bp | GTCTCAGCGACCGTGAGGACCACCGTCCACATGCAGGCGGTAGTTGGGGCCTCGTGCCGGGGGTCCCTGTaGCCCCTCAAGGCTCTGTGG | + |
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Preference number: 3 (lower is better) Translates to: VSATVRTTVHMQAVVGASCRGSL*PLKALW Trigger: CCACAGAGCCTTGAGGGGCAACAGGGACCCCCGGCA...CGAGGCCCCAACTACCGCCTGCATGTGGACGGTGGTCCTCACGGTCGCTGAGAC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000209796.2 |
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| 3UTR CCA 72 bp | GTGAGGAAACTCAGAACAGGCGGGCGTAATCCTCGTTaGGGAGTCTCAGCGACCGTGAGGACCACCGTCCAC | + |
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Preference number: 3 (lower is better) Translates to: VRKLRTGGRNPR*GVSATVRTTVH Trigger: GTGGACGGTGGTCCTCACGGTCGCTGAGACTCCCCAACGAGGATTACGCCCGCCTGTTCTGAGTTTCCTCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210027.2 |
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| 3UTR CCA 72 bp | TGGGGAGTCTCAGCGACCGTGAGGACCACCGTCCACTaGAGGGAGGTAATATTGAGAGCCCTGTCGATGAGG | + |
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Preference number: 3 (lower is better) Translates to: WGVSATVRTTVH*REVILRALSMR Trigger: CCTCATCGACAGGGCTCTCAATATTACCTCCCTCCAGTGGACGGTGGTCCTCACGGTCGCTGAGACTCCCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210027.2 |
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| 3UTR CCA 72 bp | GGGGGATTCTGGCTCAGGAGTCTCAGGGAGTGCATCTaGAGGGAGGTAATATTGAGAGCCCTGTCGATGAGG | + |
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Preference number: 3 (lower is better) Translates to: GGFWLRSLRECI*REVILRALSMR Trigger: CCTCATCGACAGGGCTCTCAATATTACCTCCCTCCAGATGCACTCCCTGAGACTCCTGAGCCAGAATCCCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209796.2 |
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| CDS-3UTR TCA 90 bp | CAGGCGGTAGTTGGGGCCTCGGCAGCGCCTCTCGGGATGCCGGGGGTCCCTGTTCATAGAGTTCTTGGTTaGAGTGGATTAGCTGCACCT | + |
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Preference number: 4 (lower is better) Translates to: QAVVGASAAPLGMPGVPVHRVLG*SGLAAP Trigger: AGGTGCAGCTAATCCACTTCAACCAAGAACTCTATG...AACAGGGACCCCCGGCATCCCGAGAGGCGCTGCCGAGGCCCCAACTACCGCCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000209796.2 |
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| CDS-3UTR TCA 90 bp | ACAGGCGGGCGTAATCCTCGTTGGGGAGTCTCAGCGACCGTGAGGACCACCGTCCCCTTGAGGCAGCACTaGGGTTCCCATAGAGTTCTT | + |
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Preference number: 4 (lower is better) Translates to: TGGRNPRWGVSATVRTTVPLRQH*GSHRVL Trigger: AAGAACTCTATGGGAACCTCAGTGCTGCCTCAAGGG...GACGGTGGTCCTCACGGTCGCTGAGACTCCCCAACGAGGATTACGCCCGCCTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209796.2 |
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| CDS-3UTR CCA 90 bp | CGGAGGAGTGCTGAGAGATCCCTGATAGGTGATGAAGCCGAAGGATTCTGGGAAGAATGGCCAGGCCGTTaGGGCCCCTTGAGGCAGCAC | + |
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Preference number: 4 (lower is better) Translates to: RRSAERSLIGDEAEGFWEEWPGR*GPLRQH Trigger: GTGCTGCCTCAAGGGGCCCCAACGGCCTGGCCATTC...TTCCCAGAATCCTTCGGCTTCATCACCTATCAGGGATCTCTCAGCACTCCTCCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209796.2 |
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| CDS-3UTR GCA 90 bp | AGTGCTGAGAGATCCCTGATAGGTGATGAAGCCGAAGGATTCTGGGAACAGGAGACATCCACGGGGCTCTaGCGCTTCCCCACAGCGCAC | + |
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Preference number: 4 (lower is better) Translates to: SAERSLIGDEAEGFWEQETSTGL*RFPTAH Trigger: GTGCGCTGTGGGGAAGCGGCAGAGCCCCGTGGATGT...CTCCTGTTCCCAGAATCCTTCGGCTTCATCACCTATCAGGGATCTCTCAGCACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209796.2 |
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| CDS-3UTR TCA 90 bp | GATGTTCCTCAATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCCAGAGTACCAGCGCTTaGGGGGCGCTCAGGCGAGCG | + |
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Preference number: 4 (lower is better) Translates to: DVPQSRLINHRETGNIQSQSTSA*GALRRA Trigger: CGCTCGCCTGAGCGCCCCTCAAGCGCTGGTACTCTG...GGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGATTGAGGAACATC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| 3UTR CAA 72 bp | ACCGTGAGGACCACCGTCCACTGGAGGGAGGTAATATaGAGAGCCCTGTCGATGAGGATCCAGGTGACAGTC | + |
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Preference number: 4 (lower is better) Translates to: TVRTTVHWREVI*RALSMRIQVTV Trigger: GACTGTCACCTGGATCCTCATCGACAGGGCTCTCAATATTACCTCCCTCCAGTGGACGGTGGTCCTCACGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210027.2 |
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| CDS-3UTR GCA 90 bp | TGTTCCTCAATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCTTAGCTGCCGCTCCCAGTaGGGCCCAGAGTACCAGCGC | + |
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Preference number: 4 (lower is better) Translates to: CSSIATDKPPRNRKHSVLSCRSQ*GPEYQR Trigger: GCGCTGGTACTCTGGGCCGCACTGGGAGCGGCAGCT...AAGGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGATTGAGGAACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR CCA 90 bp | GATGTTCCTCAATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCGAATGGCCAGGCCGTTaGGGCCCCTTGAGGCAGCAC | + |
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Preference number: 4 (lower is better) Translates to: DVPQSRLINHRETGNIQSEWPGR*GPLRQH Trigger: GTGCTGCCTCAAGGGGCCCCAACGGCCTGGCCATTC...GGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGATTGAGGAACATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR GCA 90 bp | GTTCCTCAATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCTTTCTGTGGGCCAGGGGCTaGAAGGGCCGGCCATTACCA | + |
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Preference number: 4 (lower is better) Translates to: VPQSRLINHRETGNIQSFLWARG*KGRPLP Trigger: TGGTAATGGCCGGCCCTTGCAGCCCCTGGCCCACAG...AAAGGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGATTGAGGAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR CCA 90 bp | TGTTCCTCAATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCTTCATGCAGGCGGTAGTTaGGGCCTCGGCAGCGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: CSSIATDKPPRNRKHSVLHAGGS*GLGSAS Trigger: AGAGGCGCTGCCGAGGCCCCAACTACCGCCTGCATG...AAGGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGATTGAGGAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR TCA 90 bp | TGTTCCTCAATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCTTGACCCCCAGACACGTTaGCCACAGGTCGGGATGCAG | + |
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Preference number: 4 (lower is better) Translates to: CSSIATDKPPRNRKHSVLDPQTR*PQVGMQ Trigger: CTGCATCCCGACCTGTGGTCAACGTGTCTGGGGGTC...AAGGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGATTGAGGAACA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR GCA 90 bp | GATGTTCCTCAATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCGTCCTCGGGATCAGGTaGAGGTCCGATGTGAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: DVPQSRLINHRETGNIQSVLGIR*RSDVSC Trigger: GCAGCTCACATCGGACCTGCACCTGATCCCGAGGAC...GGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGATTGAGGAACATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR CCA 90 bp | GATGTTCCTCAATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCCCAGAAGGGAGGCCCTaGCACGAAGTTTCCCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: DVPQSRLINHRETGNIQSPEGRP*HEVSLE Trigger: CTCCAGGGAAACTTCGTGCCAGGGCCTCCCTTCTGG...GGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGATTGAGGAACATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR GCA 90 bp | ATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCTTTTAATAGCTACATCCACGGGGCTCTaGCGCTTCCCCACAGCGCAC | + |
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Preference number: 4 (lower is better) Translates to: IATDKPPRNRKHSVLLIATSTGL*RFPTAH Trigger: GTGCGCTGTGGGGAAGCGGCAGAGCCCCGTGGATGT...AGCTATTAAAAGGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR CCA 90 bp | GATGTTCCTCAATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCGAAGCCGAAGGATTCTaGGAACAGGAGCTCCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: DVPQSRLINHRETGNIQSEAEGF*EQELQA Trigger: AGCCTGGAGCTCCTGTTCCCAGAATCCTTCGGCTTC...GGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGATTGAGGAACATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR TCA 90 bp | GATGTTCCTCAATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCCCCTTGAGGCAGCACTaGGGTTCCCATAGAGTTCTT | + |
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Preference number: 4 (lower is better) Translates to: DVPQSRLINHRETGNIQSPLRQH*GSHRVL Trigger: AAGAACTCTATGGGAACCTCAGTGCTGCCTCAAGGG...GGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGATTGAGGAACATC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR TCA 90 bp | ATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCTTTTAATAGCTGCCGGCCATTACCACTaGGGCTCTGGAAGATCTGGG | + |
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Preference number: 4 (lower is better) Translates to: IATDKPPRNRKHSVLLIAAGHYH*GSGRSG Trigger: CCCAGATCTTCCAGAGCCTCAGTGGTAATGGCCGGC...AGCTATTAAAAGGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR TCA 90 bp | GTTCCTCAATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCTTTGCAGGCGCAGTTCACTaGGTCGGTGGCTATAAAGAA | + |
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Preference number: 4 (lower is better) Translates to: VPQSRLINHRETGNIQSFAGAVH*VGGYKE Trigger: TTCTTTATAGCCACCGACTCAGTGAACTGCGCCTGC...AAAGGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGATTGAGGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR CCA 90 bp | ATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCTTTTAATAGCTGAGGCGACTGAGGAATaGGTTGGAACTGCCAGCCAC | + |
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Preference number: 4 (lower is better) Translates to: IATDKPPRNRKHSVLLIAEATEE*VGTASH Trigger: GTGGCTGGCAGTTCCAACCCATTCCTCAGTCGCCTC...AGCTATTAAAAGGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR GCA 90 bp | GTTCCTCAATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCTTTAGGAGTCTCAGGGAGTaGATCTGGAGGGAGGTAATA | + |
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Preference number: 4 (lower is better) Translates to: VPQSRLINHRETGNIQSFRSLRE*IWREVI Trigger: TATTACCTCCCTCCAGATGCACTCCCTGAGACTCCT...AAAGGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGATTGAGGAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR CCA 90 bp | GATGTTCCTCAATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCCTCAGGGAGTGCATCTaGAGGGAGGTAATATTGAGA | + |
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Preference number: 4 (lower is better) Translates to: DVPQSRLINHRETGNIQSLRECI*REVILR Trigger: TCTCAATATTACCTCCCTCCAGATGCACTCCCTGAG...GGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGATTGAGGAACATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR TCA 90 bp | GTTCCTCAATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCTTTCATAGAGTTCTTGGTTaGAGTGGATTAGCTGCACCT | + |
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Preference number: 4 (lower is better) Translates to: VPQSRLINHRETGNIQSFHRVLG*SGLAAP Trigger: AGGTGCAGCTAATCCACTTCAACCAAGAACTCTATG...AAAGGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGATTGAGGAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS GCA 90 bp | TCCCTGGAGATTCTCCTTGTAGCTCCACCAGTCCTCGGGATCAGGTaGAGGTCCGATGTGAGCTGCCGCTCCCAGTGCGGCCCAGAGTAC | + |
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Preference number: 5 (lower is better) Translates to: SLEILLVAPPVLGIR*RSDVSCRSQCGPEY Trigger: GTACTCTGGGCCGCACTGGGAGCGGCAGCTCACATCGGACCTGCACCTGATCCCGAGGACTGGTGGAGCTACAAGGAGAATCTCCAGGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS CCA 90 bp | CCAGACACGTTGACCACAGGTCGGGATGCAGGTAGGAAGGAGACATaGCGGCCAGTGTTGTACAAGGTTCCCCGGAGCTTCTCTCCCCCG | + |
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Preference number: 5 (lower is better) Translates to: PDTLTTGRDAGRKET*RPVLYKVPRSFSPP Trigger: CGGGGGAGAGAAGCTCCGGGGAACCTTGTACAACACTGGCCGCCATGTCTCCTTCCTACCTGCATCCCGACCTGTGGTCAACGTGTCTGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR CAA 90 bp | AGCGACCGTGAGGACCACCGTCCACATGCAGGCGGTAGTTGGGGCCTCGGCAGCAAAGTAGGCATCATATaGACAAAGAGGCTGAGAATG | + |
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Preference number: 5 (lower is better) Translates to: SDREDHRPHAGGSWGLGSKVGII*TKRLRM Trigger: CATTCTCAGCCTCTTTGTCAATATGATGCCTACTTT...GCTGCCGAGGCCCCAACTACCGCCTGCATGTGGACGGTGGTCCTCACGGTCGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209796.2 |
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| CDS CCA 90 bp | AAGTGGATTAGCTGCACCTCAGCGGAGAAGCCTTCATGGTTGATCTaGTGTTCAGAGCCGGCACCATCTCGAGCTCCAAATAGCAGGCGC | + |
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Preference number: 5 (lower is better) Translates to: KWISCTSAEKPSWLI*CSEPAPSRAPNSRR Trigger: GCGCCTGCTATTTGGAGCTCGAGATGGTGCCGGCTCTGAACACCAGATCAACCATGAAGGCTTCTCCGCTGAGGTGCAGCTAATCCACTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR CAA 90 bp | GTTCCTCAATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCTTTTGCCGGGGGTCCCTGTaGCCCCTCAAGGCTCTGTGG | + |
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Preference number: 5 (lower is better) Translates to: VPQSRLINHRETGNIQSFCRGSL*PLKALW Trigger: CCACAGAGCCTTGAGGGGCAACAGGGACCCCCGGCA...AAAGGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGATTGAGGAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR CAA 90 bp | GATGTTCCTCAATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCGGACCCCCAGACACGTaGACCACAGGTCGGGATGCA | + |
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Preference number: 5 (lower is better) Translates to: DVPQSRLINHRETGNIQSGPPDT*TTGRDA Trigger: TGCATCCCGACCTGTGGTCAACGTGTCTGGGGGTCC...GGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGATTGAGGAACATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS TCA 90 bp | CATATTGACAAAGAGGCTGAGAATGGCCAGGCCGTTGGGGCCCCTTaGGGCAGCACTGAGGTTCCCATAGAGTTCTTGGTTGAAGTGGAT | + |
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Preference number: 5 (lower is better) Translates to: HIDKEAENGQAVGAP*GSTEVPIEFLVEVD Trigger: ATCCACTTCAACCAAGAACTCTATGGGAACCTCAGTGCTGCCTCAAGGGGCCCCAACGGCCTGGCCATTCTCAGCCTCTTTGTCAATATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000209796.2 |
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| CDS-3UTR CAA 90 bp | ATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCTTTTAATAGCTCCAGAGTACCAGCGCTaGAGGGGCGCTCAGGCGAGC | + |
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Preference number: 5 (lower is better) Translates to: IATDKPPRNRKHSVLLIAPEYQR*RGAQAS Trigger: GCTCGCCTGAGCGCCCCTCAAGCGCTGGTACTCTGG...AGCTATTAAAAGGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS CCA 90 bp | TCTTGGTTGAAGTGGATTAGCTGCACCTCAGCGGAGAAGCCTTCATaGTTGATCTGGTGTTCAGAGCCGGCACCATCTCGAGCTCCAAAT | + |
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Preference number: 5 (lower is better) Translates to: SWLKWISCTSAEKPS*LIWCSEPAPSRAPN Trigger: ATTTGGAGCTCGAGATGGTGCCGGCTCTGAACACCAGATCAACCATGAAGGCTTCTCCGCTGAGGTGCAGCTAATCCACTTCAACCAAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS CCA 90 bp | AGGAGTGCTGAGAGATCCCTGATAGGTGATGAAGCCGAAGGATTCTaGGAACAGGAGCTCCAGGCTCAGGTCTTGAAGAAAGTAGGCATC | + |
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Preference number: 5 (lower is better) Translates to: RSAERSLIGDEAEGF*EQELQAQVLKKVGI Trigger: GATGCCTACTTTCTTCAAGACCTGAGCCTGGAGCTCCTGTTCCCAGAATCCTTCGGCTTCATCACCTATCAGGGATCTCTCAGCACTCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR CAA 90 bp | ATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCTTTTAATAGCTACATGGCGGCCAGTGTaGTACAAGGTTCCCCGGAGC | + |
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Preference number: 5 (lower is better) Translates to: IATDKPPRNRKHSVLLIATWRPV*YKVPRS Trigger: GCTCCGGGGAACCTTGTACAACACTGGCCGCCATGT...AGCTATTAAAAGGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR CAA 90 bp | ATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCTTTTAATAGCTGTGATAGTGTCCCGGTaGAGGAGGCGACTGAGGAAT | + |
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Preference number: 5 (lower is better) Translates to: IATDKPPRNRKHSVLLIAVIVSR*RRRLRN Trigger: ATTCCTCAGTCGCCTCCTCAACCGGGACACTATCAC...AGCTATTAAAAGGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS-3UTR CAA 90 bp | TGTTCCTCAATCGCGACTGATAAACCACCGAGAAACCGGAAACATTCAGTCCTTCTCCAGGCTCAGGTCTaGAAGAAAGTAGGCATCATT | + |
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Preference number: 5 (lower is better) Translates to: CSSIATDKPPRNRKHSVLLQAQV*KKVGII Trigger: AATGATGCCTACTTTCTTCAAGACCTGAGCCTGGAG...AAGGACTGAATGTTTCCGGTTTCTCGGTGGTTTATCAGTCGCGATTGAGGAACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS GCA 72 bp | ATCAGGTGCAGGTCCGATGTGAGCTGCCGCTCCCAGTaGGGCCCAGAGTACCAGCGCTTGAGGGGCGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: IRCRSDVSCRSQ*GPEYQRLRGAQ Trigger: CTGAGCGCCCCTCAAGCGCTGGTACTCTGGGCCGCACTGGGAGCGGCAGCTCACATCGGACCTGCACCTGAT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS GCA 72 bp | ATTCTCCTTGTAGCTCCACCAGTCCTCGGGATCAGGTaGAGGTCCGATGTGAGCTGCCGCTCCCAGTGCGGC | + |
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Preference number: 6 (lower is better) Translates to: ILLVAPPVLGIR*RSDVSCRSQCG Trigger: GCCGCACTGGGAGCGGCAGCTCACATCGGACCTGCACCTGATCCCGAGGACTGGTGGAGCTACAAGGAGAAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS CAA 72 bp | CGGGATGCAGGTAGGAAGGAGACATGGCGGCCAGTGTaGTACAAGGTTCCCCGGAGCTTCTCTCCCCCGGTG | + |
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Preference number: 6 (lower is better) Translates to: RDAGRKETWRPV*YKVPRSFSPPV Trigger: CACCGGGGGAGAGAAGCTCCGGGGAACCTTGTACAACACTGGCCGCCATGTCTCCTTCCTACCTGCATCCCG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS CAA 90 bp | ACCACAGGTCGGGATGCAGGTAGGAAGGAGACATGGCGGCCAGTGTaGTACAAGGTTCCCCGGAGCTTCTCTCCCCCGGTGCTGAGTCTG | + |
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Preference number: 6 (lower is better) Translates to: TTGRDAGRKETWRPV*YKVPRSFSPPVLSL Trigger: CAGACTCAGCACCGGGGGAGAGAAGCTCCGGGGAACCTTGTACAACACTGGCCGCCATGTCTCCTTCCTACCTGCATCCCGACCTGTGGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS TCA 72 bp | GTCGGTGGCTATAAAGAAGGGGACCCCCAGACACGTTaGCCACAGGTCGGGATGCAGGTAGGAAGGAGACAT | + |
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Preference number: 6 (lower is better) Translates to: VGGYKEGDPQTR*PQVGMQVGRRH Trigger: ATGTCTCCTTCCTACCTGCATCCCGACCTGTGGTCAACGTGTCTGGGGGTCCCCTTCTTTATAGCCACCGAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS TCA 72 bp | CACCATCTCGAGCTCCAAATAGCAGGCGCAGTTCACTaGGTCGGTGGCTATAAAGAAGGGGACCCCCAGACA | + |
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Preference number: 6 (lower is better) Translates to: HHLELQIAGAVH*VGGYKEGDPQT Trigger: TGTCTGGGGGTCCCCTTCTTTATAGCCACCGACTCAGTGAACTGCGCCTGCTATTTGGAGCTCGAGATGGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS CCA 72 bp | GGTGATAGTGTCCCGGTTGAGGAGGCGACTGAGGAATaGGTTGGAACTGCCAGCCACATTGACAAAGAGGCT | + |
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Preference number: 6 (lower is better) Translates to: GDSVPVEEATEE*VGTASHIDKEA Trigger: AGCCTCTTTGTCAATGTGGCTGGCAGTTCCAACCCATTCCTCAGTCGCCTCCTCAACCGGGACACTATCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS CAA 90 bp | TGGTTGAAGTGGATTAGCTGCACCTCAGCGGAGAAGCCTTCATGGTaGATCTGGTGTTCAGAGCCGGCACCATCTCGAGCTCCAAATAGC | + |
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Preference number: 6 (lower is better) Translates to: WLKWISCTSAEKPSW*IWCSEPAPSRAPNS Trigger: GCTATTTGGAGCTCGAGATGGTGCCGGCTCTGAACACCAGATCAACCATGAAGGCTTCTCCGCTGAGGTGCAGCTAATCCACTTCAACCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS CCA 72 bp | GAGAGATCCCTGATAGGTGATGAAGCCGAAGGATTCTaGGAACAGGAGCTCCAGGCTCAGGTCTTGAAGAAA | + |
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Preference number: 6 (lower is better) Translates to: ERSLIGDEAEGF*EQELQAQVLKK Trigger: TTTCTTCAAGACCTGAGCCTGGAGCTCCTGTTCCCAGAATCCTTCGGCTTCATCACCTATCAGGGATCTCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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| CDS CAA 90 bp | GATGAAGCCGAAGGATTCTGGGAACAGGAGCTCCAGGCTCAGGTCTaGAAGAAAGTAGGCATCATTTTTGTAGGAGATTCGGGTGATAGT | + |
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Preference number: 6 (lower is better) Translates to: DEAEGFWEQELQAQV*KKVGIIFVGDSGDS Trigger: ACTATCACCCGAATCTCCTACAAAAATGATGCCTACTTTCTTCAAGACCTGAGCCTGGAGCTCCTGTTCCCAGAATCCTTCGGCTTCATC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003360.10 |
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