Pregenerated sensors for CAPZA3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041791Ensembl transcript IDs: ENSMUST00000043797.6
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | AAATGTATTTACCCTTTTTGCTGTGTTGGTGAATACTaGCTGTATAACACGATTTCTTATTCTTCCCCCTTT | + |
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Preference number: 3 (lower is better) Translates to: KCIYPFCCVGEY*LYNTISYSSPF Trigger: AAAGGGGGAAGAATAAGAAATCGTGTTATACAGTCAGTATTCACCAACACAGCAAAAAGGGTAAATACATTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR CCA 90 bp | ACGAGTCCAGGAGCTTCCCAACTCTATCCAAGCACTTACTCCCCAGAAAACACTGTGAGACAGGAGGACTaGGTTGCCGTCGATGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: TSPGASQLYPSTYSPENTVRQED*VAVDAE Trigger: CTCTGCATCGACGGCAACCCAGTCCTCCTGTCTCAC...AGTGTTTTCTGGGGAGTAAGTGCTTGGATAGAGTTGGGAAGCTCCTGGACTCGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR TCA 90 bp | TTATTACGAGTCCAGGAGCTTCCCAACTCTATCCAAGCACTTACTCCCCAGAAATATTTTTGGCAGTGCTaGTGGCCTGCGCACTCACCC | + |
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Preference number: 4 (lower is better) Translates to: LLRVQELPNSIQALTPQKYFWQC*WPAHSP Trigger: GGGTGAGTGCGCAGGCCATCAGCACTGCCAAAAATA...TTTCTGGGGAGTAAGTGCTTGGATAGAGTTGGGAAGCTCCTGGACTCGTAATAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR TCA 90 bp | TTCCCAACTCTATCCAAGCACTTACTCCCCAGAAAACACTTTAGCTTGAGCCGACCTGCGCACTCACCCTaGTGGTGCATAAGCTTTTCA | + |
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Preference number: 4 (lower is better) Translates to: FPTLSKHLLPRKHFSLSRPAHSP*WCISFS Trigger: TGAAAAGCTTATGCACCATCAGGGTGAGTGCGCAGG...TCGGCTCAAGCTAAAGTGTTTTCTGGGGAGTAAGTGCTTGGATAGAGTTGGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR CCA 90 bp | ACGAGTCCAGGAGCTTCCCAACTCTATCCAAGCACTTACTCCCCAGAAAACACTTGGACTAAGAGCCTGTaGATGACTTTCTCTTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: TSPGASQLYPSTYSPENTWTKSL*MTFSFS Trigger: AGAGAAAGAGAAAGTCATCCACAGGCTCTTAGTCCA...AGTGTTTTCTGGGGAGTAAGTGCTTGGATAGAGTTGGGAAGCTCCTGGACTCGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR TCA 90 bp | ACTGACTGTATAACACGATTTCTTATTCTTCCCCCTTTTCAAACTGGCACAGGACAAGCCTTGCGAAACTaGGAGCCAACTGGGCTTGAT | + |
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Preference number: 4 (lower is better) Translates to: TDCITRFLILPPFQTGTGQALRN*EPTGLD Trigger: ATCAAGCCCAGTTGGCTCTCAGTTTCGCAAGGCTTG...TCCTGTGCCAGTTTGAAAAGGGGGAAGAATAAGAAATCGTGTTATACAGTCAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR CCA 90 bp | TTCCCAACTCTATCCAAGCACTTACTCCCCAGAAAACACTTTAGCTTGAGCCGAATTCTCCCTGTGACTTaGGTTAGAAACGGGTTTACC | + |
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Preference number: 4 (lower is better) Translates to: FPTLSKHLLPRKHFSLSRILPVT*VRNGFT Trigger: GGTAAACCCGTTTCTAACCCAAGTCACAGGGAGAAT...TCGGCTCAAGCTAAAGTGTTTTCTGGGGAGTAAGTGCTTGGATAGAGTTGGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR GCA 90 bp | ACCCTTTTTGCTGTGTTGGTGAATACTGACTGTATAACACGATTTCTTATTCTTACAGGAGGACTGGGTTaGCGTCGATGCAGAGTGGGA | + |
|
Preference number: 4 (lower is better) Translates to: TLFAVLVNTDCITRFLILTGGLG*RRCRVG Trigger: TCCCACTCTGCATCGACGGCAACCCAGTCCTCCTGT...AAGAATAAGAAATCGTGTTATACAGTCAGTATTCACCAACACAGCAAAAAGGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR GCA 90 bp | ACGATTTCTTATTCTTCCCCCTTTTCAAACTGGCACAGGACTAAAGAAAGGCTTGCCAGTCAATCAAAGTaGGTGTCACTGGAAGATCCC | + |
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Preference number: 4 (lower is better) Translates to: TISYSSPFSNWHRTKERLASQSK*VSLEDP Trigger: GGGATCTTCCAGTGACACGCACTTTGATTGACTGGC...AAGCCTTTCTTTAGTCCTGTGCCAGTTTGAAAAGGGGGAAGAATAAGAAATCGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR CCA 90 bp | ACGATTTCTTATTCTTCCCCCTTTTCAAACTGGCACAGGACTAAAGAAAGGCTTGCCGTCGATGCAGAGTaGGACACAGTATTTTTGGCA | + |
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Preference number: 4 (lower is better) Translates to: TISYSSPFSNWHRTKERLAVDAE*DTVFLA Trigger: TGCCAAAAATACTGTGTCCCACTCTGCATCGACGGC...AAGCCTTTCTTTAGTCCTGTGCCAGTTTGAAAAGGGGGAAGAATAAGAAATCGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR GCA 90 bp | GACTGTATAACACGATTTCTTATTCTTCCCCCTTTTCAAACTGGCACAGGACTATTCTTCCACAAGCCTTaGGAAACTGAGAGCCAACTG | + |
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Preference number: 4 (lower is better) Translates to: DCITRFLILPPFQTGTGLFFHKP*ETESQL Trigger: CAGTTGGCTCTCAGTTTCGCAAGGCTTGTGGAAGAA...TAGTCCTGTGCCAGTTTGAAAAGGGGGAAGAATAAGAAATCGTGTTATACAGTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR TCA 90 bp | AAAGAAAGGCTTATTACGAGTCCAGGAGCTTCCCAACTCTATCCAAGCACTTACACACACCTAAAGAAGTaGGCTTGCACAAAAATTCTC | + |
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Preference number: 4 (lower is better) Translates to: KERLITSPGASQLYPSTYTHLKK*ACTKIL Trigger: GAGAATTTTTGTGCAAGCTCACTTCTTTAGGTGTGT...GTAAGTGCTTGGATAGAGTTGGGAAGCTCCTGGACTCGTAATAAGCCTTTCTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR TCA 90 bp | ACTGACTGTATAACACGATTTCTTATTCTTCCCCCTTTTCAAACTGGCACAGGATTGGAGACTTCAATATaGAGGTTGACACACCTAAAG | + |
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Preference number: 4 (lower is better) Translates to: TDCITRFLILPPFQTGTGLETSI*RLTHLK Trigger: CTTTAGGTGTGTCAACCTTCATATTGAAGTCTCCAA...TCCTGTGCCAGTTTGAAAAGGGGGAAGAATAAGAAATCGTGTTATACAGTCAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR TCA 90 bp | ACCCTTTTTGCTGTGTTGGTGAATACTGACTGTATAACACGATTTCTTATTCTTTGGATATCCCTCAGTTaGTTCTGGAGTAGGTCAAAC | + |
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Preference number: 4 (lower is better) Translates to: TLFAVLVNTDCITRFLILWISLS*FWSRSN Trigger: GTTTGACCTACTCCAGAATCAACTGAGGGATATCCA...AAGAATAAGAAATCGTGTTATACAGTCAGTATTCACCAACACAGCAAAAAGGGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR TCA 90 bp | TTTGCTGTGTTGGTGAATACTGACTGTATAACACGATTTCTTATTCTTCCCCCTCCTGTAGTTCTTCTATaGCAGCAGCTTGAAACTTAT | + |
|
Preference number: 4 (lower is better) Translates to: FAVLVNTDCITRFLILPPPVVLL*QQLETY Trigger: ATAAGTTTCAAGCTGCTGTCATAGAAGAACTACAGG...AGGGGGAAGAATAAGAAATCGTGTTATACAGTCAGTATTCACCAACACAGCAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR GCA 90 bp | ACTGACTGTATAACACGATTTCTTATTCTTCCCCCTTTTCAAACTGGCACAGGAAGCTGTGGTCTTCAATaGAAGCTATTAAGAATTCTT | + |
|
Preference number: 4 (lower is better) Translates to: TDCITRFLILPPFQTGTGSCGLQ*KLLRIL Trigger: AAGAATTCTTAATAGCTTGCATTGAAGACCACAGCT...TCCTGTGCCAGTTTGAAAAGGGGGAAGAATAAGAAATCGTGTTATACAGTCAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR GCA 90 bp | TTTCTTATTCTTCCCCCTTTTCAAACTGGCACAGGACTAAAGAAAGGCTTATTATTTTTCTCAGCACATTaGAATTTCCATTTGGGTAGT | + |
|
Preference number: 4 (lower is better) Translates to: FLILPPFQTGTGLKKGLLFFSAH*NFHLGS Trigger: ACTACCCAAATGGAAATTGCAATGTGCTGAGAAAAA...TAATAAGCCTTTCTTTAGTCCTGTGCCAGTTTGAAAAGGGGGAAGAATAAGAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS GCA 90 bp | CACCCATCACATTGTGGTGAGACAGGAGGACTGGGTTGCCGTCGATaGAGAGTGGGACACAGTATTTTTGGCAGTGCTGATGGCCTGCGC | + |
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Preference number: 5 (lower is better) Translates to: HPSHCGETGGLGCRR*RVGHSIFGSADGLR Trigger: GCGCAGGCCATCAGCACTGCCAAAAATACTGTGTCCCACTCTGCATCGACGGCAACCCAGTCCTCCTGTCTCACCACAATGTGATGGGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS CCA 90 bp | CACATTGTGGTGAGACAGGAGGACTGGGTTGCCGTCGATGCAGAGTaGGACACAGTATTTTTGGCAGTGCTGATGGCCTGCGCACTCACC | + |
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Preference number: 5 (lower is better) Translates to: HIVVRQEDWVAVDAE*DTVFLAVLMACALT Trigger: GGTGAGTGCGCAGGCCATCAGCACTGCCAAAAATACTGTGTCCCACTCTGCATCGACGGCAACCCAGTCCTCCTGTCTCACCACAATGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS GCA 90 bp | AGCGGAAGTCACCCATCACATTGTGGTGAGACAGGAGGACTGGGTTaGCGTCGATGCAGAGTGGGACACAGTATTTTTGGCAGTGCTGAT | + |
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Preference number: 5 (lower is better) Translates to: SGSHPSHCGETGGLG*RRCRVGHSIFGSAD Trigger: ATCAGCACTGCCAAAAATACTGTGTCCCACTCTGCATCGACGGCAACCCAGTCCTCCTGTCTCACCACAATGTGATGGGTGACTTCCGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS CCA 90 bp | AAAGAAGCGGAAGTCACCCATCACATTGTGGTGAGACAGGAGGACTaGGTTGCCGTCGATGCAGAGTGGGACACAGTATTTTTGGCAGTG | + |
|
Preference number: 5 (lower is better) Translates to: KEAEVTHHIVVRQED*VAVDAEWDTVFLAV Trigger: CACTGCCAAAAATACTGTGTCCCACTCTGCATCGACGGCAACCCAGTCCTCCTGTCTCACCACAATGTGATGGGTGACTTCCGCTTCTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR CAA 90 bp | AAGAAAGGCTTATTACGAGTCCAGGAGCTTCCCAACTCTATCCAAGCACTTACTGACAGGAGGACTGGGTaGCCGTCGATGCAGAGTGGG | + |
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Preference number: 5 (lower is better) Translates to: KKGLLRVQELPNSIQALTDRRTG*PSMQSG Trigger: CCCACTCTGCATCGACGGCAACCCAGTCCTCCTGTC...AGTAAGTGCTTGGATAGAGTTGGGAAGCTCCTGGACTCGTAATAAGCCTTTCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS GCA 90 bp | GTCGATGCAGAGTGGGACACAGTATTTTTGGCAGTGCTGATGGCCTaGGCACTCACCCTGATGGTGCATAAGCTTTTCATCTCGGATAAG | + |
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Preference number: 5 (lower is better) Translates to: VDAEWDTVFLAVLMA*ALTLMVHKLFISDK Trigger: CTTATCCGAGATGAAAAGCTTATGCACCATCAGGGTGAGTGCGCAGGCCATCAGCACTGCCAAAAATACTGTGTCCCACTCTGCATCGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS TCA 90 bp | TCTTGTTCTTCCACAAGCCTTGCGAAACTGAGAGCCAACTGGGCTTaGTTGACCACCTCCAAGCTCTCCTTTAGGTCCTTGGAGACTTCA | + |
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Preference number: 5 (lower is better) Translates to: SCSSTSLAKLRANWA*LTTSKLSFRSLETS Trigger: TGAAGTCTCCAAGGACCTAAAGGAGAGCTTGGAGGTGGTCAATCAAGCCCAGTTGGCTCTCAGTTTCGCAAGGCTTGTGGAAGAACAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS GCA 90 bp | CCTAACTTGGGGTACATCACCAGATTCAAGTCAGAGAGGATCCGTTaGCAGTCAATCAAAGTGCGTGTCACTGGAAGATCCCTCCGTAAT | + |
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Preference number: 5 (lower is better) Translates to: PNLGYITRFKSERIR*QSIKVRVTGRSLRN Trigger: ATTACGGAGGGATCTTCCAGTGACACGCACTTTGATTGACTGGCAACGGATCCTCTCTGACTTGAATCTGGTGATGTACCCCAAGTTAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS GCA 90 bp | TATGACAGCAGCTTGAAACTTATTCTCTTGTTCTTCCACAAGCCTTaGGAAACTGAGAGCCAACTGGGCTTGATTGACCACCTCCAAGCT | + |
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Preference number: 5 (lower is better) Translates to: YDSSLKLILLFFHKP*ETESQLGLIDHLQA Trigger: AGCTTGGAGGTGGTCAATCAAGCCCAGTTGGCTCTCAGTTTCGCAAGGCTTGTGGAAGAACAAGAGAATAAGTTTCAAGCTGCTGTCATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS GCA 90 bp | TCACCAGATTCAAGTCAGAGAGGATCCGTTGCCAGTCAATCAAAGTaGGTGTCACTGGAAGATCCCTCCGTAATATTTTTCTCAGGGCTT | + |
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Preference number: 5 (lower is better) Translates to: SPDSSQRGSVASQSK*VSLEDPSVIFFSGL Trigger: AAGCCCTGAGAAAAATATTACGGAGGGATCTTCCAGTGACACGCACTTTGATTGACTGGCAACGGATCCTCTCTGACTTGAATCTGGTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR CAA 90 bp | ACTGACTGTATAACACGATTTCTTATTCTTCCCCCTTTTCAAACTGGCACAGGAGAGAGCCAACTGGGCTaGATTGACCACCTCCAAGCT | + |
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Preference number: 5 (lower is better) Translates to: TDCITRFLILPPFQTGTGESQLG*IDHLQA Trigger: AGCTTGGAGGTGGTCAATCAAGCCCAGTTGGCTCTC...TCCTGTGCCAGTTTGAAAAGGGGGAAGAATAAGAAATCGTGTTATACAGTCAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS TCA 90 bp | CGTGACTTTGGATATCCCTCAGTTGATTCTGGAGTAGGTCAAACCTaGAAGAAAGTTTGCTCTGGTAGTCAAAGAAGCGGAAGTCACCCA | + |
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Preference number: 5 (lower is better) Translates to: RDFGYPSVDSGVGQT*KKVCSGSQRSGSHP Trigger: TGGGTGACTTCCGCTTCTTTGACTACCAGAGCAAACTTTCTTTCAGGTTTGACCTACTCCAGAATCAACTGAGGGATATCCAAAGTCACG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS CCA 90 bp | TGCACAAAAATTCTCCCTGTGACTTGGGTTAGAAACGGGTTTACCTaGAAGATCCACTTAGACTTCCAAAGACCGTTCCAACACTCTCCA | + |
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Preference number: 5 (lower is better) Translates to: CTKILPVTWVRNGFT*KIHLDFQRPFQHSP Trigger: TGGAGAGTGTTGGAACGGTCTTTGGAAGTCTAAGTGGATCTTCCAGGTAAACCCGTTTCTAACCCAAGTCACAGGGAGAATTTTTGTGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR CAA 90 bp | TTCCCAACTCTATCCAAGCACTTACTCCCCAGAAAACACTTTAGCTTGAGCCGACCTAAAGAAGTGAGCTaGCACAAAAATTCTCCCTGT | + |
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Preference number: 5 (lower is better) Translates to: FPTLSKHLLPRKHFSLSRPKEVS*HKNSPC Trigger: ACAGGGAGAATTTTTGTGCAAGCTCACTTCTTTAGG...TCGGCTCAAGCTAAAGTGTTTTCTGGGGAGTAAGTGCTTGGATAGAGTTGGGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS TCA 90 bp | AGGGCTTCGTTAGACAACTCCTGTAGTTCTTCTATGACAGCAGCTTaGAACTTATTCTCTTGTTCTTCCACAAGCCTTGCGAAACTGAGA | + |
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Preference number: 5 (lower is better) Translates to: RASLDNSCSSSMTAA*NLFSCSSTSLAKLR Trigger: TCTCAGTTTCGCAAGGCTTGTGGAAGAACAAGAGAATAAGTTTCAAGCTGCTGTCATAGAAGAACTACAGGAGTTGTCTAACGAAGCCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR CAA 90 bp | CTTATTACGAGTCCAGGAGCTTCCCAACTCTATCCAAGCACTTACTCCCCAGAACATTGCAATTTCCATTaGGGTAGTGATCATTCACAT | + |
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Preference number: 5 (lower is better) Translates to: LITSPGASQLYPSTYSPEHCNFH*GSDHSH Trigger: ATGTGAATGATCACTACCCAAATGGAAATTGCAATG...TTCTGGGGAGTAAGTGCTTGGATAGAGTTGGGAAGCTCCTGGACTCGTAATAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR CAA 90 bp | ACCCTTTTTGCTGTGTTGGTGAATACTGACTGTATAACACGATTTCTTATTCTTTGGGACACAGTATTTTaGGCAGTGCTGATGGCCTGC | + |
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Preference number: 5 (lower is better) Translates to: TLFAVLVNTDCITRFLILWDTVF*AVLMAC Trigger: GCAGGCCATCAGCACTGCCAAAAATACTGTGTCCCA...AAGAATAAGAAATCGTGTTATACAGTCAGTATTCACCAACACAGCAAAAAGGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR CAA 90 bp | ACTAAAGAAAGGCTTATTACGAGTCCAGGAGCTTCCCAACTCTATCCAAGCACTTTCTATGACAGCAGCTaGAAACTTATTCTCTTGTTC | + |
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Preference number: 5 (lower is better) Translates to: TKERLITSPGASQLYPSTFYDSS*KLILLF Trigger: GAACAAGAGAATAAGTTTCAAGCTGCTGTCATAGAA...AGTGCTTGGATAGAGTTGGGAAGCTCCTGGACTCGTAATAAGCCTTTCTTTAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR CAA 90 bp | ACTGACTGTATAACACGATTTCTTATTCTTCCCCCTTTTCAAACTGGCACAGGATTGAAACTTATTCTCTaGTTCTTCCACAAGCCTTGC | + |
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Preference number: 5 (lower is better) Translates to: TDCITRFLILPPFQTGTGLKLIL*FFHKPC Trigger: GCAAGGCTTGTGGAAGAACAAGAGAATAAGTTTCAA...TCCTGTGCCAGTTTGAAAAGGGGGAAGAATAAGAAATCGTGTTATACAGTCAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS-3UTR CAA 90 bp | TTTGCTGTGTTGGTGAATACTGACTGTATAACACGATTTCTTATTCTTCCCCCTATAACATACCCTAACTaGGGGTACATCACCAGATTC | + |
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Preference number: 5 (lower is better) Translates to: FAVLVNTDCITRFLILPPITYPN*GYITRF Trigger: GAATCTGGTGATGTACCCCAAGTTAGGGTATGTTAT...AGGGGGAAGAATAAGAAATCGTGTTATACAGTCAGTATTCACCAACACAGCAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS CAA 90 bp | CAGGAGGACTGGGTTGCCGTCGATGCAGAGTGGGACACAGTATTTTaGGCAGTGCTGATGGCCTGCGCACTCACCCTGATGGTGCATAAG | + |
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Preference number: 6 (lower is better) Translates to: QEDWVAVDAEWDTVF*AVLMACALTLMVHK Trigger: CTTATGCACCATCAGGGTGAGTGCGCAGGCCATCAGCACTGCCAAAAATACTGTGTCCCACTCTGCATCGACGGCAACCCAGTCCTCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS CCA 72 bp | GTGAGACAGGAGGACTGGGTTGCCGTCGATGCAGAGTaGGACACAGTATTTTTGGCAGTGCTGATGGCCTGC | + |
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Preference number: 6 (lower is better) Translates to: VRQEDWVAVDAE*DTVFLAVLMAC Trigger: GCAGGCCATCAGCACTGCCAAAAATACTGTGTCCCACTCTGCATCGACGGCAACCCAGTCCTCCTGTCTCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS CAA 72 bp | TGGGTTGCCGTCGATGCAGAGTGGGACACAGTATTTTaGGCAGTGCTGATGGCCTGCGCACTCACCCTGATG | + |
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Preference number: 6 (lower is better) Translates to: WVAVDAEWDTVF*AVLMACALTLM Trigger: CATCAGGGTGAGTGCGCAGGCCATCAGCACTGCCAAAAATACTGTGTCCCACTCTGCATCGACGGCAACCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS TCA 72 bp | TCCACAAGCCTTGCGAAACTGAGAGCCAACTGGGCTTaGTTGACCACCTCCAAGCTCTCCTTTAGGTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: STSLAKLRANWA*LTTSKLSFRSL Trigger: CAAGGACCTAAAGGAGAGCTTGGAGGTGGTCAATCAAGCCCAGTTGGCTCTCAGTTTCGCAAGGCTTGTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS GCA 72 bp | CATTGTGGTGAGACAGGAGGACTGGGTTGCCGTCGATaGAGAGTGGGACACAGTATTTTTGGCAGTGCTGAT | + |
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Preference number: 6 (lower is better) Translates to: HCGETGGLGCRR*RVGHSIFGSAD Trigger: ATCAGCACTGCCAAAAATACTGTGTCCCACTCTGCATCGACGGCAACCCAGTCCTCCTGTCTCACCACAATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS CCA 72 bp | GAAGTCACCCATCACATTGTGGTGAGACAGGAGGACTaGGTTGCCGTCGATGCAGAGTGGGACACAGTATTT | + |
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Preference number: 6 (lower is better) Translates to: EVTHHIVVRQED*VAVDAEWDTVF Trigger: AAATACTGTGTCCCACTCTGCATCGACGGCAACCCAGTCCTCCTGTCTCACCACAATGTGATGGGTGACTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS GCA 72 bp | GAGTGGGACACAGTATTTTTGGCAGTGCTGATGGCCTaGGCACTCACCCTGATGGTGCATAAGCTTTTCATC | + |
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Preference number: 6 (lower is better) Translates to: EWDTVFLAVLMA*ALTLMVHKLFI Trigger: GATGAAAAGCTTATGCACCATCAGGGTGAGTGCGCAGGCCATCAGCACTGCCAAAAATACTGTGTCCCACTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS GCA 72 bp | GGGTACATCACCAGATTCAAGTCAGAGAGGATCCGTTaGCAGTCAATCAAAGTGCGTGTCACTGGAAGATCC | + |
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Preference number: 6 (lower is better) Translates to: GYITRFKSERIR*QSIKVRVTGRS Trigger: GGATCTTCCAGTGACACGCACTTTGATTGACTGGCAACGGATCCTCTCTGACTTGAATCTGGTGATGTACCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS GCA 72 bp | TCAAGTCAGAGAGGATCCGTTGCCAGTCAATCAAAGTaGGTGTCACTGGAAGATCCCTCCGTAATATTTTTC | + |
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Preference number: 6 (lower is better) Translates to: SSQRGSVASQSK*VSLEDPSVIFF Trigger: GAAAAATATTACGGAGGGATCTTCCAGTGACACGCACTTTGATTGACTGGCAACGGATCCTCTCTGACTTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS CCA 72 bp | ATTCTCCCTGTGACTTGGGTTAGAAACGGGTTTACCTaGAAGATCCACTTAGACTTCCAAAGACCGTTCCAA | + |
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Preference number: 6 (lower is better) Translates to: ILPVTWVRNGFT*KIHLDFQRPFQ Trigger: TTGGAACGGTCTTTGGAAGTCTAAGTGGATCTTCCAGGTAAACCCGTTTCTAACCCAAGTCACAGGGAGAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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| CDS TCA 72 bp | GGATATCCCTCAGTTGATTCTGGAGTAGGTCAAACCTaGAAGAAAGTTTGCTCTGGTAGTCAAAGAAGCGGA | + |
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Preference number: 6 (lower is better) Translates to: GYPSVDSGVGQT*KKVCSGSQRSG Trigger: TCCGCTTCTTTGACTACCAGAGCAAACTTTCTTTCAGGTTTGACCTACTCCAGAATCAACTGAGGGATATCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043797.6 |
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