Pregenerated sensors for CAPZA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015733Ensembl transcript IDs: ENSMUST00000015877.14, ENSMUST00000130606.8, ENSMUST00000152005.3
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTACGTGAGGAATGGATTCCACTCGAGTATAAGCAGCAGAGCTACTaGATGAAACCACAAATCCACCAACTCCTTACAGTAAACGCTAAC | + |
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Preference number: 1 (lower is better) Translates to: VREEWIPLEYKQQSY*MKPQIHQLLTVNAN Trigger: GTTAGCGTTTACTGTAAGGAGTTGGTGGATTTGTGGTTTCATTCAGTAGCTCTGCTGCTTATACTCGAGTGGAATCCATTCCTCACGTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015877.14 |
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| 3UTR-3UTR GCA 90 bp | ATGACCCAGAGGGATCACCTCTTCATTGTAGGAGAAGGAACAGAGAGAGAGAGATACAGTGATCTTAGATaGAACAGCCCACCTCACTGG | + |
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Preference number: 2 (lower is better) Translates to: MTQRDHLFIVGEGTERERYSDLR*NSPPHW Trigger: CCAGTGAGGTGGGCTGTTGCATCTAAGATCACTGTA...TCTCTCTCTCTCTGTTCCTTCTCCTACAATGAAGAGGTGATCCCTCTGGGTCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015877.14 |
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| 3UTR-3UTR CCA 90 bp | ACCAAATGTTGCCATTTTAATGTCACACTGATATTCAGTTTCCAATCCAAGGGGAACAGCCCACCTCACTaGGCAGCTGTCAGCTCAGAA | + |
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Preference number: 2 (lower is better) Translates to: TKCCHFNVTLIFSFQSKGNSPPH*AAVSSE Trigger: TTCTGAGCTGACAGCTGCCCAGTGAGGTGGGCTGTT...CCCCTTGGATTGGAAACTGAATATCAGTGTGACATTAAAATGGCAACATTTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015877.14 |
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| 3UTR CAA 90 bp | TCACAAGCCAAAGACAACTTCAGGGTTACAGTAAAGAAGGTACTTTaGAGATATTTCAAACCCTTTAGACATGACCCAGAGGGATCACCT | + |
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Preference number: 2 (lower is better) Translates to: SQAKDNFRVTVKKVL*RYFKPFRHDPEGSP Trigger: AGGTGATCCCTCTGGGTCATGTCTAAAGGGTTTGAAATATCTCAAAAGTACCTTCTTTACTGTAACCCTGAAGTTGTCTTTGGCTTGTGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015877.14 |
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| 3UTR-3UTR TCA 90 bp | ACCAAATGTTGCCATTTTAATGTCACACTGATATTCAGTTTCCAATCCAAGGGGTCATGTCCAACCCTCTaGACAAAGGAAATGGAACAG | + |
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Preference number: 2 (lower is better) Translates to: TKCCHFNVTLIFSFQSKGSCPTL*TKEMEQ Trigger: CTGTTCCATTTCCTTTGTTCAGAGGGTTGGACATGA...CCCCTTGGATTGGAAACTGAATATCAGTGTGACATTAAAATGGCAACATTTGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015877.14 |
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| 3UTR-3UTR CCA 90 bp | ACCAAATGTTGCCATTTTAATGTCACACTGATATTCAGTTTCCAATCCAAGGGGTCTGAACAAAGGAAATaGAACAGGTTATTAGCTAAG | + |
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Preference number: 2 (lower is better) Translates to: TKCCHFNVTLIFSFQSKGSEQRK*NRLLAK Trigger: CTTAGCTAATAACCTGTTCCATTTCCTTTGTTCAGA...CCCCTTGGATTGGAAACTGAATATCAGTGTGACATTAAAATGGCAACATTTGGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015877.14 |
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| 3UTR TCA 72 bp | GAATGGATTCCACTCGAGTATAAGCAGCAGAGCTACTaGATGAAACCACAAATCCACCAACTCCTTACAGTA | + |
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Preference number: 3 (lower is better) Translates to: EWIPLEYKQQSY*MKPQIHQLLTV Trigger: TACTGTAAGGAGTTGGTGGATTTGTGGTTTCATTCAGTAGCTCTGCTGCTTATACTCGAGTGGAATCCATTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015877.14 |
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| CDS-3UTR GCA 90 bp | ATGAAACCACAAATCCACCAACTCCTTACAGTAAACGCTAACATTCACCGAGGCGTCCAGGTTATACTGTaGAAATGCATGTGCGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: MKPQIHQLLTVNANIHRGVQVIL*KCMCGS Trigger: GGAGCCGCACATGCATTTGCACAGTATAACCTGGAC...GCCTCGGTGAATGTTAGCGTTTACTGTAAGGAGTTGGTGGATTTGTGGTTTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015877.14 |
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| CDS-3UTR GCA 90 bp | AGGAACAGAGTAAGATACTTATCTAAACTCATGTCCAACCCTCTGAACAAAGGACTGTGCAAATGCATGTaGGGCTCCTTCCCTGAGAAG | + |
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Preference number: 4 (lower is better) Translates to: RNRVRYLSKLMSNPLNKGLCKCM*GSFPEK Trigger: CTTCTCAGGGAAGGAGCCGCACATGCATTTGCACAG...TCCTTTGTTCAGAGGGTTGGACATGAGTTTAGATAAGTATCTTACTCTGTTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015877.14 |
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| CDS-3UTR TCA 90 bp | AGGAACAGAGTAAGATACTTATCTAAACTCATGTCCAACCCTCTGAACAAAGGATCTCCAGGAGGGGCGTaGATGATGAATTTTGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: RNRVRYLSKLMSNPLNKGSPGGA*MMNFAA Trigger: AGCAGCAAAATTCATCATTCACGCCCCTCCTGGAGA...TCCTTTGTTCAGAGGGTTGGACATGAGTTTAGATAAGTATCTTACTCTGTTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015877.14 |
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| CDS-3UTR TCA 90 bp | ATGAAACCACAAATCCACCAACTCCTTACAGTAAACGCTAACATTCACCGAGGCCAGTGCAGTTTCTACTaGAGTTCTCCAGGATTCAAT | + |
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Preference number: 4 (lower is better) Translates to: MKPQIHQLLTVNANIHRGQCSFY*SSPGFN Trigger: ATTGAATCCTGGAGAACTTCAGTAGAAACTGCACTG...GCCTCGGTGAATGTTAGCGTTTACTGTAAGGAGTTGGTGGATTTGTGGTTTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015877.14 |
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| CDS-3UTR GCA 90 bp | ATGACCCAGAGGGATCACCTCTTCATTGTAGGAGAAGGAACAGAGAGAGAGAGAGTGAATGATGAATTTTaGTGCTATACGAACCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: MTQRDHLFIVGEGTERERVNDEF*CYTNLL Trigger: GAGAAGGTTCGTATAGCAGCAAAATTCATCATTCAC...TCTCTCTCTCTCTGTTCCTTCTCCTACAATGAAGAGGTGATCCCTCTGGGTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000015877.14 |
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| CDS-3UTR GCA 90 bp | AGGAACAGAGTAAGATACTTATCTAAACTCATGTCCAACCCTCTGAACAAAGGAGTTATACTGTGCAAATaGATGTGCGGCTCCTTCCCT | + |
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Preference number: 4 (lower is better) Translates to: RNRVRYLSKLMSNPLNKGVILCK*MCGSFP Trigger: AGGGAAGGAGCCGCACATGCATTTGCACAGTATAAC...TCCTTTGTTCAGAGGGTTGGACATGAGTTTAGATAAGTATCTTACTCTGTTCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015877.14 |
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| CDS-3UTR CCA 90 bp | AGAGAGAAAGAAAGAGAGAGAGAGAGAGACTTCGAAAGGAGGAACAGAGTAAGAGCCTTCAATTTTTACTaGTGTAAACTGGTCCAGGTT | + |
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Preference number: 4 (lower is better) Translates to: REKERERERDFERRNRVRAFNFY*CKLVQV Trigger: AACCTGGACCAGTTTACACCAGTAAAAATTGAAGGC...TCTTACTCTGTTCCTCCTTTCGAAGTCTCTCTCTCTCTCTCTTTCTTTCTCTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015877.14 |
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| CDS-3UTR CCA 90 bp | ACCAAATGTTGCCATTTTAATGTCACACTGATATTCAGTTTCCAATCCAAGGGGTTCTCCAGGATTCAATaGCATTTTCTGCTTCGTAGG | + |
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Preference number: 4 (lower is better) Translates to: TKCCHFNVTLIFSFQSKGFSRIQ*HFLLRR Trigger: CCTACGAAGCAGAAAATGCCATTGAATCCTGGAGAA...CCCCTTGGATTGGAAACTGAATATCAGTGTGACATTAAAATGGCAACATTTGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000015877.14 |
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| CDS-3UTR GCA 90 bp | TGCCATTTTAATGTCACACTGATATTCAGTTTCCAATCCAAGGGGAGGGAGAATAATGATGAATTTTGCTaGTATACGAACCTTCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: CHFNVTLIFSFQSKGRENNDEFC*YTNLLL Trigger: GAGGAGAAGGTTCGTATAGCAGCAAAATTCATCATT...ATTCTCCCTCCCCTTGGATTGGAAACTGAATATCAGTGTGACATTAAAATGGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000015877.14 |
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| CDS-3UTR CAA 90 bp | ATGACCCAGAGGGATCACCTCTTCATTGTAGGAGAAGGAACAGAGAGAGAGAGATGCCCATCTACTTTTTaGCCATACACAGTGCAGACC | + |
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Preference number: 5 (lower is better) Translates to: MTQRDHLFIVGEGTERERCPSTF*PYTVQT Trigger: GGTCTGCACTGTGTATGGCAAAAAAGTAGATGGGCA...TCTCTCTCTCTCTGTTCCTTCTCCTACAATGAAGAGGTGATCCCTCTGGGTCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000015877.14 |
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| CDS TCA 90 bp | ATTCGGATAATGCTCTTTTACATAAGCTCGCAGTGCAGTTTCTACTaGAGTTCTCCAGGATTCAATGGCATTTTCTGCTTCGTAGGGCCT | + |
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Preference number: 5 (lower is better) Translates to: IRIMLFYISSQCSFY*SSPGFNGIFCFVGP Trigger: AGGCCCTACGAAGCAGAAAATGCCATTGAATCCTGGAGAACTTCAGTAGAAACTGCACTGCGAGCTTATGTAAAAGAGCATTATCCGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000015877.14 ENSMUST00000130606.8 ENSMUST00000152005.3 |
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| CDS GCA 72 bp | AAATTCTCCAGGAGGGGCGTGAATGATGAATTTTGCTaGTATACGAACCTTCTCCTCATCGGACAACTGCTC | + |
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Preference number: 6 (lower is better) Translates to: KFSRRGVNDEFC*YTNLLLIGQLL Trigger: GAGCAGTTGTCCGATGAGGAGAAGGTTCGTATAGCAGCAAAATTCATCATTCACGCCCCTCCTGGAGAATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000015877.14 ENSMUST00000130606.8 ENSMUST00000152005.3 |
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| CDS TCA 72 bp | ATGCTCTTTTACATAAGCTCGCAGTGCAGTTTCTACTaGAGTTCTCCAGGATTCAATGGCATTTTCTGCTTC | + |
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Preference number: 6 (lower is better) Translates to: MLFYISSQCSFY*SSPGFNGIFCF Trigger: GAAGCAGAAAATGCCATTGAATCCTGGAGAACTTCAGTAGAAACTGCACTGCGAGCTTATGTAAAAGAGCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000015877.14 ENSMUST00000130606.8 ENSMUST00000152005.3 |
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