Pregenerated sensors for CAPZA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000070372Ensembl transcript IDs: ENSMUST00000094028.10
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGCATCCTTCACTTCCTTCCACTGAGGGAAACAGACCCATGGGACTaGCAACCCTGGTTTCCCAGTGCTTTCTCTAGGCTGTTCTTCCTA | + |
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Preference number: 1 (lower is better) Translates to: GILHFLPLRETDPWD*QPWFPSAFSRLFFL Trigger: TAGGAAGAACAGCCTAGAGAAAGCACTGGGAAACCAGGGTTGTCAGTCCCATGGGTCTGTTTCCCTCAGTGGAAGGAAGTGAAGGATGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR CCA 90 bp | GCGTTTCTGCAGGTATTGCCACTGGCAGGAAAAGTGGACCCAGGATaGATAAGAATGAAAACTTGGTATAGCCAGACTTGGTCAGACTGG | + |
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Preference number: 1 (lower is better) Translates to: AFLQVLPLAGKVDPG*IRMKTWYSQTWSDW Trigger: CCAGTCTGACCAAGTCTGGCTATACCAAGTTTTCATTCTTATCCATCCTGGGTCCACTTTTCCTGCCAGTGGCAATACCTGCAGAAACGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR TCA 90 bp | GCTGCCTGGGAACCGTCCTTTTCACTTTGGTTCATTCCAGCTTTGTaGGGGACACAGCTATTTATTCGTCTGCTTACAGAACAATCCTGC | + |
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Preference number: 1 (lower is better) Translates to: AAWEPSFSLWFIPAL*GTQLFIRLLTEQSC Trigger: GCAGGATTGTTCTGTAAGCAGACGAATAAATAGCTGTGTCCCTCACAAAGCTGGAATGAACCAAAGTGAAAAGGACGGTTCCCAGGCAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR CCA 90 bp | CCACTGGCAGGAAAAGTGGACCCAGGATGGATAAGAATGAAAACTTaGTATAGCCAGACTTGGTCAGACTGGATCAAGACTTCTGGACTC | + |
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Preference number: 1 (lower is better) Translates to: PLAGKVDPGWIRMKT*YSQTWSDWIKTSGL Trigger: GAGTCCAGAAGTCTTGATCCAGTCTGACCAAGTCTGGCTATACCAAGTTTTCATTCTTATCCATCCTGGGTCCACTTTTCCTGCCAGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR TCA 90 bp | ATACTAATGGGCAAAACTCTTCTAAAAATGCCAACATCTGTTGAGGCGTTTCTGACAGACCCATGGGACTaGCAACCCTGGTTTCCCAGT | + |
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Preference number: 2 (lower is better) Translates to: ILMGKTLLKMPTSVEAFLTDPWD*QPWFPS Trigger: ACTGGGAAACCAGGGTTGTCAGTCCCATGGGTCTGT...CAGAAACGCCTCAACAGATGTTGGCATTTTTAGAAGAGTTTTGCCCATTAGTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR TCA 90 bp | TTGATTATAGTTGAATATCTCACCTTGAGAACAAAGGTTGACAGGACAGAAAGGGCTGGTCCTTCACAGTaGGCAGAGGCTCATCAGGCT | + |
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Preference number: 2 (lower is better) Translates to: LIIVEYLTLRTKVDRTERAGPSQ*AEAHQA Trigger: AGCCTGATGAGCCTCTGCTCACTGTGAAGGACCAGC...CCTTTCTGTCCTGTCAACCTTTGTTCTCAAGGTGAGATATTCAACTATAATCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR TCA 90 bp | ATACTAATGGGCAAAACTCTTCTAAAAATGCCAACATCTGTTGAGGCGTTTCTGAGAACATGGGGTGGGTaGGAGAGATTGAGGTGGAGG | + |
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Preference number: 2 (lower is better) Translates to: ILMGKTLLKMPTSVEAFLRTWGG*ERLRWR Trigger: CCTCCACCTCAATCTCTCTCACCCACCCCATGTTCT...CAGAAACGCCTCAACAGATGTTGGCATTTTTAGAAGAGTTTTGCCCATTAGTAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR CCA 90 bp | TTGCCACTGGCAGGAAAAGTGGACCCAGGATGGATAAGAATGAAAACTTGGTATCAGACTTGGTCAGACTaGATCAAGACTTCTGGACTC | + |
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Preference number: 2 (lower is better) Translates to: LPLAGKVDPGWIRMKTWYQTWSD*IKTSGL Trigger: GAGTCCAGAAGTCTTGATCCAGTCTGACCAAGTCTG...ATACCAAGTTTTCATTCTTATCCATCCTGGGTCCACTTTTCCTGCCAGTGGCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR CAA 90 bp | ACTCTTCTAAAAATGCCAACATCTGTTGAGGCGTTTCTGCAGGTATaGCCACTGGCAGGAAAAGTGGACCCAGGATGGATAAGAATGAAA | + |
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Preference number: 2 (lower is better) Translates to: TLLKMPTSVEAFLQV*PLAGKVDPGWIRMK Trigger: TTTCATTCTTATCCATCCTGGGTCCACTTTTCCTGCCAGTGGCAATACCTGCAGAAACGCCTCAACAGATGTTGGCATTTTTAGAAGAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR TCA 90 bp | TTGATTATAGTTGAATATCTCACCTTGAGAACAAAGGTTGACAGGACAGAAAGGGCTCATCAGGCTGTCTaGGCACAGCACTCCAGCATA | + |
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Preference number: 2 (lower is better) Translates to: LIIVEYLTLRTKVDRTERAHQAV*AQHSSI Trigger: TATGCTGGAGTGCTGTGCTCAGACAGCCTGATGAGC...CCTTTCTGTCCTGTCAACCTTTGTTCTCAAGGTGAGATATTCAACTATAATCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR GCA 90 bp | TTGCCACTGGCAGGAAAAGTGGACCCAGGATGGATAAGAATGAAAACTTGGTATTTAGGGTCTAAACATTaGTCAGAACATGGGGTGGGT | + |
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Preference number: 2 (lower is better) Translates to: LPLAGKVDPGWIRMKTWYLGSKH*SEHGVG Trigger: ACCCACCCCATGTTCTGAGCAATGTTTAGACCCTAA...ATACCAAGTTTTCATTCTTATCCATCCTGGGTCCACTTTTCCTGCCAGTGGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR CCA 90 bp | TTGCCACTGGCAGGAAAAGTGGACCCAGGATGGATAAGAATGAAAACTTGGTATAAGCCACTGAAGCACTaGAAGTGCTTTAAAGCACAG | + |
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Preference number: 2 (lower is better) Translates to: LPLAGKVDPGWIRMKTWYKPLKH*KCFKAQ Trigger: CTGTGCTTTAAAGCACTTCCAGTGCTTCAGTGGCTT...ATACCAAGTTTTCATTCTTATCCATCCTGGGTCCACTTTTCCTGCCAGTGGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR CCA 90 bp | TTGCCACTGGCAGGAAAAGTGGACCCAGGATGGATAAGAATGAAAACTTGGTATGAGAAGCTGCTGCCATaGAATTTCCAGGAAACTTTG | + |
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Preference number: 2 (lower is better) Translates to: LPLAGKVDPGWIRMKTWYEKLLP*NFQETL Trigger: CAAAGTTTCCTGGAAATTCCATGGCAGCAGCTTCTC...ATACCAAGTTTTCATTCTTATCCATCCTGGGTCCACTTTTCCTGCCAGTGGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR CCA 90 bp | ATACTAATGGGCAAAACTCTTCTAAAAATGCCAACATCTGTTGAGGCGTTTCTGGCTCAGAACATGGGGTaGGTGAGAGAGATTGAGGTG | + |
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Preference number: 2 (lower is better) Translates to: ILMGKTLLKMPTSVEAFLAQNMG*VREIEV Trigger: CACCTCAATCTCTCTCACCCACCCCATGTTCTGAGC...CAGAAACGCCTCAACAGATGTTGGCATTTTTAGAAGAGTTTTGCCCATTAGTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR TCA 90 bp | TTGCCACTGGCAGGAAAAGTGGACCCAGGATGGATAAGAATGAAAACTTGGTATATCACTAAAAGCCACTaGAGCACTGGAAGTGCTTTA | + |
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Preference number: 2 (lower is better) Translates to: LPLAGKVDPGWIRMKTWYITKSH*STGSAL Trigger: TAAAGCACTTCCAGTGCTTCAGTGGCTTTTAGTGAT...ATACCAAGTTTTCATTCTTATCCATCCTGGGTCCACTTTTCCTGCCAGTGGCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR TCA 90 bp | TTGATTATAGTTGAATATCTCACCTTGAGAACAAAGGTTGACAGGACAGAAAGGAGCACTCTGACATACTaGCAGATGCTGCCTGGGAAC | + |
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Preference number: 2 (lower is better) Translates to: LIIVEYLTLRTKVDRTERSTLTY*QMLPGN Trigger: GTTCCCAGGCAGCATCTGTCAGTATGTCAGAGTGCT...CCTTTCTGTCCTGTCAACCTTTGTTCTCAAGGTGAGATATTCAACTATAATCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR CCA 90 bp | TTGATTATAGTTGAATATCTCACCTTGAGAACAAAGGTTGACAGGACAGAAAGGTGCAGGTATTGCCACTaGCAGGAAAAGTGGACCCAG | + |
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Preference number: 2 (lower is better) Translates to: LIIVEYLTLRTKVDRTERCRYCH*QEKWTQ Trigger: CTGGGTCCACTTTTCCTGCCAGTGGCAATACCTGCA...CCTTTCTGTCCTGTCAACCTTTGTTCTCAAGGTGAGATATTCAACTATAATCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR TCA 90 bp | TTGCCACTGGCAGGAAAAGTGGACCCAGGATGGATAAGAATGAAAACTTGGTATATAAGTTCTACTCACTaGGAGACAAAGGCCAGTATT | + |
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Preference number: 2 (lower is better) Translates to: LPLAGKVDPGWIRMKTWYISSTH*ETKASI Trigger: AATACTGGCCTTTGTCTCTCAGTGAGTAGAACTTAT...ATACCAAGTTTTCATTCTTATCCATCCTGGGTCCACTTTTCCTGCCAGTGGCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR GCA 90 bp | ATACTAATGGGCAAAACTCTTCTAAAAATGCCAACATCTGTTGAGGCGTTTCTGATTTCCAGGAAACTTTaGCTCCCAACATGGACCCCA | + |
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Preference number: 2 (lower is better) Translates to: ILMGKTLLKMPTSVEAFLISRKL*LPTWTP Trigger: TGGGGTCCATGTTGGGAGGCAAAGTTTCCTGGAAAT...CAGAAACGCCTCAACAGATGTTGGCATTTTTAGAAGAGTTTTGCCCATTAGTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR GCA 90 bp | TTGATTATAGTTGAATATCTCACCTTGAGAACAAAGGTTGACAGGACAGAAAGGCGTTTCTGCAGGTATTaGCACTGGCAGGAAAAGTGG | + |
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Preference number: 2 (lower is better) Translates to: LIIVEYLTLRTKVDRTERRFCRY*HWQEKW Trigger: CCACTTTTCCTGCCAGTGGCAATACCTGCAGAAACG...CCTTTCTGTCCTGTCAACCTTTGTTCTCAAGGTGAGATATTCAACTATAATCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR TCA 90 bp | TTGCCACTGGCAGGAAAAGTGGACCCAGGATGGATAAGAATGAAAACTTGGTATATGAACTCTATTGACTaGAAAACAGAACTTAGGACG | + |
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Preference number: 2 (lower is better) Translates to: LPLAGKVDPGWIRMKTWYMNSID*KTELRT Trigger: CGTCCTAAGTTCTGTTTTTCAGTCAATAGAGTTCAT...ATACCAAGTTTTCATTCTTATCCATCCTGGGTCCACTTTTCCTGCCAGTGGCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR TCA 90 bp | TTGATTATAGTTGAATATCTCACCTTGAGAACAAAGGTTGACAGGACAGAAAGGATTACCTGTGTGTTCTaGGATCACACACACACACAC | + |
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Preference number: 2 (lower is better) Translates to: LIIVEYLTLRTKVDRTERITCVF*DHTHTH Trigger: GTGTGTGTGTGTGTGATCTCAGAACACACAGGTAAT...CCTTTCTGTCCTGTCAACCTTTGTTCTCAAGGTGAGATATTCAACTATAATCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR CCA 90 bp | ATACTAATGGGCAAAACTCTTCTAAAAATGCCAACATCTGTTGAGGCGTTTCTGTCCTACAGACATCCATaGTTACAACAGAACCAGATG | + |
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Preference number: 2 (lower is better) Translates to: ILMGKTLLKMPTSVEAFLSYRHP*LQQNQM Trigger: CATCTGGTTCTGTTGTAACCATGGATGTCTGTAGGA...CAGAAACGCCTCAACAGATGTTGGCATTTTTAGAAGAGTTTTGCCCATTAGTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR TCA 90 bp | ATACTAATGGGCAAAACTCTTCTAAAAATGCCAACATCTGTTGAGGCGTTTCTGGATGGGAGGAGACAATaGGAAAATGAAAGTAAGCAA | + |
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Preference number: 2 (lower is better) Translates to: ILMGKTLLKMPTSVEAFLDGRRQ*ENESKQ Trigger: TTGCTTACTTTCATTTTCTCATTGTCTCCTCCCATC...CAGAAACGCCTCAACAGATGTTGGCATTTTTAGAAGAGTTTTGCCCATTAGTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR CCA 90 bp | ATACTAATGGGCAAAACTCTTCTAAAAATGCCAACATCTGTTGAGGCGTTTCTGCTGGATCAAGACTTCTaGACTCTGATCCTATGTTTT | + |
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Preference number: 2 (lower is better) Translates to: ILMGKTLLKMPTSVEAFLLDQDF*TLILCF Trigger: AAAACATAGGATCAGAGTCCAGAAGTCTTGATCCAG...CAGAAACGCCTCAACAGATGTTGGCATTTTTAGAAGAGTTTTGCCCATTAGTAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR GCA 90 bp | TTGATTATAGTTGAATATCTCACCTTGAGAACAAAGGTTGACAGGACAGAAAGGTTGCAAACAAACTCCTaGTTGACAGTATTACTGAGC | + |
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Preference number: 2 (lower is better) Translates to: LIIVEYLTLRTKVDRTERLQTNS*LTVLLS Trigger: GCTCAGTAATACTGTCAAGCAGGAGTTTGTTTGCAA...CCTTTCTGTCCTGTCAACCTTTGTTCTCAAGGTGAGATATTCAACTATAATCAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR CCA 90 bp | TTGATTATAGTTGAATATCTCACCTTGAGAACAAAGGTTGACAGGACAGAAAGGAAAGTGGACCCAGGATaGATAAGAATGAAAACTTGG | + |
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Preference number: 2 (lower is better) Translates to: LIIVEYLTLRTKVDRTERKVDPG*IRMKTW Trigger: CCAAGTTTTCATTCTTATCCATCCTGGGTCCACTTT...CCTTTCTGTCCTGTCAACCTTTGTTCTCAAGGTGAGATATTCAACTATAATCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR CCA 90 bp | ATACTAATGGGCAAAACTCTTCTAAAAATGCCAACATCTGTTGAGGCGTTTCTGATAAGAATGAAAACTTaGTATAGCCAGACTTGGTCA | + |
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Preference number: 2 (lower is better) Translates to: ILMGKTLLKMPTSVEAFLIRMKT*YSQTWS Trigger: TGACCAAGTCTGGCTATACCAAGTTTTCATTCTTAT...CAGAAACGCCTCAACAGATGTTGGCATTTTTAGAAGAGTTTTGCCCATTAGTAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR TCA 72 bp | CACTTCCTTCCACTGAGGGAAACAGACCCATGGGACTaGCAACCCTGGTTTCCCAGTGCTTTCTCTAGGCTG | + |
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Preference number: 3 (lower is better) Translates to: HFLPLRETDPWD*QPWFPSAFSRL Trigger: CAGCCTAGAGAAAGCACTGGGAAACCAGGGTTGTCAGTCCCATGGGTCTGTTTCCCTCAGTGGAAGGAAGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR CCA 72 bp | GTGCTTTCTCTAGGCTGTTCTTCCTACAGACATCCATaGTTACAACAGAACCAGATGGGAGGAGACAATGAG | + |
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Preference number: 3 (lower is better) Translates to: VLSLGCSSYRHP*LQQNQMGGDNE Trigger: CTCATTGTCTCCTCCCATCTGGTTCTGTTGTAACCATGGATGTCTGTAGGAAGAACAGCCTAGAGAAAGCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR CCA 72 bp | CAGGTATTGCCACTGGCAGGAAAAGTGGACCCAGGATaGATAAGAATGAAAACTTGGTATAGCCAGACTTGG | + |
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Preference number: 3 (lower is better) Translates to: QVLPLAGKVDPG*IRMKTWYSQTW Trigger: CCAAGTCTGGCTATACCAAGTTTTCATTCTTATCCATCCTGGGTCCACTTTTCCTGCCAGTGGCAATACCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR CCA 72 bp | GGATTTAAAATCAAGACCCTAGAGAAGCTGCTGCCATaGAATTTCCAGGAAACTTTGCCTCCCAACATGGAC | + |
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Preference number: 3 (lower is better) Translates to: GFKIKTLEKLLP*NFQETLPPNMD Trigger: GTCCATGTTGGGAGGCAAAGTTTCCTGGAAATTCCATGGCAGCAGCTTCTCTAGGGTCTTGATTTTAAATCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR TCA 72 bp | AATGGGCAAAACTCTTCTAAAAATGCCAACATCTGTTaGGGCGTTTCTGCAGGTATTGCCACTGGCAGGAAA | + |
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Preference number: 3 (lower is better) Translates to: NGQNSSKNANIC*GVSAGIATGRK Trigger: TTTCCTGCCAGTGGCAATACCTGCAGAAACGCCTCAACAGATGTTGGCATTTTTAGAAGAGTTTTGCCCATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR CCA 72 bp | GGAAAAGTGGACCCAGGATGGATAAGAATGAAAACTTaGTATAGCCAGACTTGGTCAGACTGGATCAAGACT | + |
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Preference number: 3 (lower is better) Translates to: GKVDPGWIRMKT*YSQTWSDWIKT Trigger: AGTCTTGATCCAGTCTGACCAAGTCTGGCTATACCAAGTTTTCATTCTTATCCATCCTGGGTCCACTTTTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR TCA 72 bp | CCTGTGACCTTTACAATAAACATGAACTCTATTGACTaGAAAACAGAACTTAGGACGAGGGCCCAGAGAGGA | + |
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Preference number: 3 (lower is better) Translates to: PVTFTINMNSID*KTELRTRAQRG Trigger: TCCTCTCTGGGCCCTCGTCCTAAGTTCTGTTTTTCAGTCAATAGAGTTCATGTTTATTGTAAAGGTCACAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR TCA 72 bp | GAACCGTCCTTTTCACTTTGGTTCATTCCAGCTTTGTaGGGGACACAGCTATTTATTCGTCTGCTTACAGAA | + |
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Preference number: 3 (lower is better) Translates to: EPSFSLWFIPAL*GTQLFIRLLTE Trigger: TTCTGTAAGCAGACGAATAAATAGCTGTGTCCCTCACAAAGCTGGAATGAACCAAAGTGAAAAGGACGGTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR CAA 90 bp | TTGATTATAGTTGAATATCTCACCTTGAGAACAAAGGTTGACAGGACAGAAAGGAATTTCCAGGAAACTTaGCCTCCCAACATGGACCCC | + |
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Preference number: 3 (lower is better) Translates to: LIIVEYLTLRTKVDRTERNFQET*PPNMDP Trigger: GGGGTCCATGTTGGGAGGCAAAGTTTCCTGGAAATT...CCTTTCTGTCCTGTCAACCTTTGTTCTCAAGGTGAGATATTCAACTATAATCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR-3UTR CAA 90 bp | ATACTAATGGGCAAAACTCTTCTAAAAATGCCAACATCTGTTGAGGCGTTTCTGTATGACCACACCGTGTaGAATCCTTTTCTTTCCATG | + |
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Preference number: 3 (lower is better) Translates to: ILMGKTLLKMPTSVEAFLYDHTV*NPFLSM Trigger: CATGGAAAGAAAAGGATTCAACACGGTGTGGTCATA...CAGAAACGCCTCAACAGATGTTGGCATTTTTAGAAGAGTTTTGCCCATTAGTAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR CAA 72 bp | AAAATGCCAACATCTGTTGAGGCGTTTCTGCAGGTATaGCCACTGGCAGGAAAAGTGGACCCAGGATGGATA | + |
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Preference number: 4 (lower is better) Translates to: KMPTSVEAFLQV*PLAGKVDPGWI Trigger: TATCCATCCTGGGTCCACTTTTCCTGCCAGTGGCAATACCTGCAGAAACGCCTCAACAGATGTTGGCATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| 3UTR CAA 72 bp | ACTGACAGATGCTGCCTGGGAACCGTCCTTTTCACTTaGGTTCATTCCAGCTTTGTGAGGGACACAGCTATT | + |
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Preference number: 4 (lower is better) Translates to: TDRCCLGTVLFT*VHSSFVRDTAI Trigger: AATAGCTGTGTCCCTCACAAAGCTGGAATGAACCAAAGTGAAAAGGACGGTTCCCAGGCAGCATCTGTCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| CDS-3UTR TCA 90 bp | TTGATTATAGTTGAATATCTCACCTTGAGAACAAAGGTTGACAGGACAGAAAGGCTTGAACGTGGTGTCTaGCATAGTTTGGTAATTTTC | + |
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Preference number: 4 (lower is better) Translates to: LIIVEYLTLRTKVDRTERLERGV*HSLVIF Trigger: GAAAATTACCAAACTATGTCAGACACCACGTTCAAG...CCTTTCTGTCCTGTCAACCTTTGTTCTCAAGGTGAGATATTCAACTATAATCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| CDS-3UTR CAA 90 bp | TTGATTATAGTTGAATATCTCACCTTGAGAACAAAGGTTGACAGGACAGAAAGGCTGGCTGCGGGTCACTaGCTTCTTTCCGTAAATGAT | + |
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Preference number: 5 (lower is better) Translates to: LIIVEYLTLRTKVDRTERLAAGH*LLSVND Trigger: ATCATTTACGGAAAGAAGCAAGTGACCCGCAGCCAG...CCTTTCTGTCCTGTCAACCTTTGTTCTCAAGGTGAGATATTCAACTATAATCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| CDS-3UTR CAA 90 bp | TTGATTATAGTTGAATATCTCACCTTGAGAACAAAGGTTGACAGGACAGAAAGGCTGAGGAGATTGTCATaGTTAAGCAGTAGCCGGACA | + |
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Preference number: 5 (lower is better) Translates to: LIIVEYLTLRTKVDRTERLRRLS*LSSSRT Trigger: TGTCCGGCTACTGCTTAACAATGACAATCTCCTCAG...CCTTTCTGTCCTGTCAACCTTTGTTCTCAAGGTGAGATATTCAACTATAATCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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| CDS-3UTR CAA 90 bp | TTGATTATAGTTGAATATCTCACCTTGAGAACAAAGGTTGACAGGACAGAAAGGAGTAGCCGGACATCATaGAATACTTCATTAAACTCC | + |
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Preference number: 5 (lower is better) Translates to: LIIVEYLTLRTKVDRTERSSRTS*NTSLNS Trigger: GGAGTTTAATGAAGTATTCAATGATGTCCGGCTACT...CCTTTCTGTCCTGTCAACCTTTGTTCTCAAGGTGAGATATTCAACTATAATCAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094028.10 |
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