RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CAPSL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039676

Ensembl transcript IDs: ENSMUST00000042360.5, ENSMUST00000226688.2

Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp AGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACTaGGAGTCACGTGACTGCATGCATGGCCTGGTTTCCAGGGACAGG +
Preference number: 2 (lower is better)
Translates to: SELKSILSLGVERNH*ESRDCMHGLVSRDR
Trigger: CCTGTCCCTGGAAACCAGGCCATGCATGCAGTCACGTGACTCCAAGTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
3UTR CAA 90 bp AGAAGAGTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTaGGGGGTAGAGCGTAATCACTTGGAGTCACGTGACTGCATGCAT +
Preference number: 2 (lower is better)
Translates to: RRVCLMNSELKSILS*GVERNHLESRDCMH
Trigger: ATGCATGCAGTCACGTGACTCCAAGTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGACTCTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
3UTR CAA 90 bp AATACAGTGTGTTGGCAAAGAAGAGTCTGTTTGATGAACAGTGAATaGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACTTGGAG +
Preference number: 2 (lower is better)
Translates to: NTVCWQRRVCLMNSE*KSILSLGVERNHLE
Trigger: CTCCAAGTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGACTCTTCTTTGCCAACACACTGTATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR CCA 90 bp CGTAATCACTTGGAGTCACGTGACTGCATGCATGGCCTGGTTTCCAGGGACAGGAGCTTTTTCTTGGATTaGATTGCCATCTCCCGGTCA +
Preference number: 4 (lower is better)
Translates to: RNHLESRDCMHGLVSRDRSFFLD*IAISRS
Trigger: TGACCGGGAGATGGCAATCCAATCCAAGAAAAAGCT...CCTGTCCCTGGAAACCAGGCCATGCATGCAGTCACGTGACTCCAAGTGATTACG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR TCA 90 bp TTCTGCCCTCTTGTCAGCCTAGAAAATACAGTGTGTTGGCAAAGAAGAGTCTGTCTCTGCCAAGTCCTTTaGTGCCTGCAGAACCTCTGG +
Preference number: 4 (lower is better)
Translates to: FCPLVSLENTVCWQRRVCLCQVL*CLQNLW
Trigger: CCAGAGGTTCTGCAGGCATCAAAGGACTTGGCAGAG...ACAGACTCTTCTTTGCCAACACACTGTATTTTCTAGGCTGACAAGAGGGCAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR TCA 90 bp GTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTCTCTGCCAAGTCCTTTaGTGCCTGCAGAACCTCTGG +
Preference number: 4 (lower is better)
Translates to: VCLMNSELKSILSLGVERLCQVL*CLQNLW
Trigger: CCAGAGGTTCTGCAGGCATCAAAGGACTTGGCAGAG...ACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR CCA 90 bp AGAGTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGTGCCTGCAGAACCTCTaGCCAGGCACTGCAACCGAA +
Preference number: 4 (lower is better)
Translates to: RVCLMNSELKSILSLGVECLQNL*PGTATE
Trigger: TTCGGTTGCAGTGCCTGGCCAGAGGTTCTGCAGGCA...CTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGACTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR TCA 90 bp GTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTCTGCATAGTAGTTCATaGATTCCTCGGGGGTCACCC +
Preference number: 4 (lower is better)
Translates to: VCLMNSELKSILSLGVERLHSSS*IPRGSP
Trigger: GGGTGACCCCCGAGGAATTCATGAACTACTATGCAG...ACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000226688.2
CDS-3UTR GCA 90 bp AGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACTTGGAGTCAAAGTCCTTTGATGCCTaGAGAACCTCTGGCCAGGCA +
Preference number: 4 (lower is better)
Translates to: SELKSILSLGVERNHLESKSFDA*RTSGQA
Trigger: TGCCTGGCCAGAGGTTCTGCAGGCATCAAAGGACTT...TGACTCCAAGTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR GCA 90 bp TTCTGCCCTCTTGTCAGCCTAGAAAATACAGTGTGTTGGCAAAGAAGAGTCTGTAAGTCCTTTGATGCCTaGAGAACCTCTGGCCAGGCA +
Preference number: 4 (lower is better)
Translates to: FCPLVSLENTVCWQRRVCKSFDA*RTSGQA
Trigger: TGCCTGGCCAGAGGTTCTGCAGGCATCAAAGGACTT...ACAGACTCTTCTTTGCCAACACACTGTATTTTCTAGGCTGACAAGAGGGCAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR TCA 90 bp AGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACTTGGAGTCACTGCATAGTAGTTCATaGATTCCTCGGGGGTCACCA +
Preference number: 4 (lower is better)
Translates to: SELKSILSLGVERNHLESLHSSS*IPRGSP
Trigger: TGGTGACCCCCGAGGAATTCATGAACTACTATGCAG...TGACTCCAAGTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000042360.5
CDS-3UTR GCA 90 bp AGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACTTGGAGTCACCTCTGGCCAGGCACTaGAACCGAAGTCTTTCAATA +
Preference number: 4 (lower is better)
Translates to: SELKSILSLGVERNHLESPLARH*NRSLSI
Trigger: TATTGAAAGACTTCGGTTGCAGTGCCTGGCCAGAGG...TGACTCCAAGTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR GCA 90 bp GTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTCCTCTGGCCAGGCACTaGAACCGAAGTCTTTCAATA +
Preference number: 4 (lower is better)
Translates to: VCLMNSELKSILSLGVERPLARH*NRSLSI
Trigger: TATTGAAAGACTTCGGTTGCAGTGCCTGGCCAGAGG...ACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR CCA 90 bp TTTCTGCCCTCTTGTCAGCCTAGAAAATACAGTGTGTTGGCAAAGAAGAGTCTGCCTCTTTTCTGGCTCTaGACATTGGAGGCCTTAACG +
Preference number: 4 (lower is better)
Translates to: FLPSCQPRKYSVLAKKSLPLFWL*TLEALT
Trigger: CGTTAAGGCCTCCAATGTCCAGAGCCAGAAAAGAGG...CAGACTCTTCTTTGCCAACACACTGTATTTTCTAGGCTGACAAGAGGGCAGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042360.5
CDS-3UTR TCA 90 bp GTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTTATCCAGAAATTTCCTaGAGACTTGTTCCTCCGTCC +
Preference number: 4 (lower is better)
Translates to: VCLMNSELKSILSLGVERYPEIS*RLVPPS
Trigger: GGACGGAGGAACAAGTCTTCAGGAAATTTCTGGATA...ACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042360.5
CDS-3UTR CCA 90 bp TTTCTGCCCTCTTGTCAGCCTAGAAAATACAGTGTGTTGGCAAAGAAGAGTCTGTGGAGAGCTTTTTCTTaGATTGGATTGCCATCTCCC +
Preference number: 4 (lower is better)
Translates to: FLPSCQPRKYSVLAKKSLWRAFS*IGLPSP
Trigger: GGGAGATGGCAATCCAATCCAAGAAAAAGCTCTCCA...CAGACTCTTCTTTGCCAACACACTGTATTTTCTAGGCTGACAAGAGGGCAGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
3UTR CAA 72 bp TGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTaGGGGGTAGAGCGTAATCACTTGGAGTCACGTGAC +
Preference number: 4 (lower is better)
Translates to: CLMNSELKSILS*GVERNHLESRD
Trigger: GTCACGTGACTCCAAGTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR TCA 90 bp GTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTCCTCCTCTTTTTCCATaGCCACAGCGTAATCATTTA +
Preference number: 4 (lower is better)
Translates to: VCLMNSELKSILSLGVERPPLFP*PQRNHL
Trigger: TAAATGATTACGCTGTGGTCATGGAAAAAGAGGAGG...ACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR CCA 90 bp TTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACAGCTTTTTCTTGGATTaGATTGCCATCTCCCGGTCA +
Preference number: 4 (lower is better)
Translates to: LMNSELKSILSLGVERNHSFFLD*IAISRS
Trigger: TGACCGGGAGATGGCAATCCAATCCAAGAAAAAGCT...GTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR CCA 90 bp TATTTCTGCCCTCTTGTCAGCCTAGAAAATACAGTGTGTTGGCAAAGAAGAGTCTGGAGAGCTTTTTCTTaGATTGGATTGCCATCTCCC +
Preference number: 4 (lower is better)
Translates to: YFCPLVSLENTVCWQRRVWRAFS*IGLPSP
Trigger: GGGAGATGGCAATCCAATCCAAGAAAAAGCTCTCCA...GACTCTTCTTTGCCAACACACTGTATTTTCTAGGCTGACAAGAGGGCAGAAATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR CCA 90 bp AGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACTTGGAGTCATCTCTATCGAATCTCTaGAAAAGTTCTTCTGCCTCC +
Preference number: 4 (lower is better)
Translates to: SELKSILSLGVERNHLESSLSNL*KSSSAS
Trigger: GGAGGCAGAAGAACTTTTCCAGAGATTCGATAGAGA...TGACTCCAAGTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR GCA 90 bp GTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTATCTGTGTCAATGGATaGACTTACACCTGCATAGTA +
Preference number: 4 (lower is better)
Translates to: VCLMNSELKSILSLGVERICVNG*TYTCIV
Trigger: TACTATGCAGGTGTAAGTGCATCCATTGACACAGAT...ACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR CCA 90 bp TATTTCTGCCCTCTTGTCAGCCTAGAAAATACAGTGTGTTGGCAAAGAAGAGTCTCTCTATCGAATCTCTaGAAAAGTTCTTCTGCCTCC +
Preference number: 4 (lower is better)
Translates to: YFCPLVSLENTVCWQRRVSLSNL*KSSSAS
Trigger: GGAGGCAGAAGAACTTTTCCAGAGATTCGATAGAGA...GACTCTTCTTTGCCAACACACTGTATTTTCTAGGCTGACAAGAGGGCAGAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR CCA 90 bp TTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACACACATCTGTGTCAATaGATGCACTTACACCTGCAT +
Preference number: 4 (lower is better)
Translates to: LMNSELKSILSLGVERNHTHLCQ*MHLHLH
Trigger: ATGCAGGTGTAAGTGCATCCATTGACACAGATGTGT...GTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR CCA 90 bp AGAGTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGACACATCTGTGTCAATaGATGCACTTACACCTGCAT +
Preference number: 4 (lower is better)
Translates to: RVCLMNSELKSILSLGVETHLCQ*MHLHLH
Trigger: ATGCAGGTGTAAGTGCATCCATTGACACAGATGTGT...CTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGACTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
3UTR CAA 72 bp TGTTGGCAAAGAAGAGTCTGTTTGATGAACAGTGAATaGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAAT +
Preference number: 4 (lower is better)
Translates to: CWQRRVCLMNSE*KSILSLGVERN
Trigger: ATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGACTCTTCTTTGCCAACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR TCA 90 bp CAAAGAAGAGTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGCCTCCTCTTTTTCCATaGCCACAGCGTAATCATTTA +
Preference number: 4 (lower is better)
Translates to: QRRVCLMNSELKSILSLGPPLFP*PQRNHL
Trigger: TAAATGATTACGCTGTGGTCATGGAAAAAGAGGAGG...CCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGACTCTTCTTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR GCA 90 bp TTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACGGATGCACTTACACCTaGATAGTAGTTCATGAATTC +
Preference number: 4 (lower is better)
Translates to: LMNSELKSILSLGVERNHGCTYT*IVVHEF
Trigger: GAATTCATGAACTACTATGCAGGTGTAAGTGCATCC...GTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR GCA 90 bp TATTTCTGCCCTCTTGTCAGCCTAGAAAATACAGTGTGTTGGCAAAGAAGAGTCATCTGTGTCAATGGATaGACTTACACCTGCATAGTA +
Preference number: 4 (lower is better)
Translates to: YFCPLVSLENTVCWQRRVICVNG*TYTCIV
Trigger: TACTATGCAGGTGTAAGTGCATCCATTGACACAGAT...GACTCTTCTTTGCCAACACACTGTATTTTCTAGGCTGACAAGAGGGCAGAAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR CAA 90 bp CGTAATCACTTGGAGTCACGTGACTGCATGCATGGCCTGGTTTCCAGGGACAGGGAGCTTTTTCTTGGATaGGATTGCCATCTCCCGGTC +
Preference number: 5 (lower is better)
Translates to: RNHLESRDCMHGLVSRDRELFLG*DCHLPV
Trigger: GACCGGGAGATGGCAATCCAATCCAAGAAAAAGCTC...CCTGTCCCTGGAAACCAGGCCATGCATGCAGTCACGTGACTCCAAGTGATTACG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS GCA 90 bp ACTCTGCCAAGTCCTTTGATGCCTGCAGAACCTCTGGCCAGGCACTaGAACCGAAGTCTTTCAATAGGATCAGTAGCTGTGGAGAGCTTT +
Preference number: 5 (lower is better)
Translates to: TLPSPLMPAEPLARH*NRSLSIGSVAVESF
Trigger: AAAGCTCTCCACAGCTACTGATCCTATTGAAAGACTTCGGTTGCAGTGCCTGGCCAGAGGTTCTGCAGGCATCAAAGGACTTGGCAGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR CAA 90 bp CGTAATCACTTGGAGTCACGTGACTGCATGCATGGCCTGGTTTCCAGGGACAGGGTGAGAAGAAACTCATaGAAGTCTATTGTTCCACTG +
Preference number: 5 (lower is better)
Translates to: RNHLESRDCMHGLVSRDRVRRNS*KSIVPL
Trigger: CAGTGGAACAATAGACTTCAATGAGTTTCTTCTCAC...CCTGTCCCTGGAAACCAGGCCATGCATGCAGTCACGTGACTCCAAGTGATTACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR CAA 90 bp AGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACTTGGAGTCAGAGCTTTTTCTTGGATaGGATTGCCATCTCCCGGTC +
Preference number: 5 (lower is better)
Translates to: SELKSILSLGVERNHLESELFLG*DCHLPV
Trigger: GACCGGGAGATGGCAATCCAATCCAAGAAAAAGCTC...TGACTCCAAGTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR CAA 90 bp TTCTGCCCTCTTGTCAGCCTAGAAAATACAGTGTGTTGGCAAAGAAGAGTCTGTAAATTTCCTGAAGACTaGTTCCTCCGTCCATTCCCC +
Preference number: 5 (lower is better)
Translates to: FCPLVSLENTVCWQRRVCKFPED*FLRPFP
Trigger: GGGGAATGGACGGAGGAACAAGTCTTCAGGAAATTT...ACAGACTCTTCTTTGCCAACACACTGTATTTTCTAGGCTGACAAGAGGGCAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042360.5
CDS-3UTR CAA 90 bp AGAGTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGGTGGAGAGCTTTTTCTaGGATTGGATTGCCATCTCC +
Preference number: 5 (lower is better)
Translates to: RVCLMNSELKSILSLGVEVESFF*DWIAIS
Trigger: GGAGATGGCAATCCAATCCAAGAAAAAGCTCTCCAC...CTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGACTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS TCA 90 bp GTTCATGAATTCCTCGGGGGTCACCAATCCATCTTTATCATAGGGTaGGTCAAAGTTATCCAGAAATTTCCTGAAGACTTGTTCCTCCGT +
Preference number: 5 (lower is better)
Translates to: VHEFLGGHQSIFIIG*VKVIQKFPEDLFLR
Trigger: ACGGAGGAACAAGTCTTCAGGAAATTTCTGGATAACTTTGACTCACCCTATGATAAAGATGGATTGGTGACCCCCGAGGAATTCATGAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042360.5
CDS GCA 90 bp CATGATGATGAAGTACACATCTGTGTCAATGGATGCACTTACACCTaGATAGTAGTTCATGAATTCCTCGGGGGTCACCAATCCATCTTT +
Preference number: 5 (lower is better)
Translates to: HDDEVHICVNGCTYT*IVVHEFLGGHQSIF
Trigger: AAAGATGGATTGGTGACCCCCGAGGAATTCATGAACTACTATGCAGGTGTAAGTGCATCCATTGACACAGATGTGTACTTCATCATCATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042360.5
CDS-3UTR CAA 90 bp GTGTGTTGGCAAAGAAGAGTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGGTGGAGAGCTTTTTCTaGGATTGGATTGCCATCTCC +
Preference number: 5 (lower is better)
Translates to: VCWQRRVCLMNSELKSILVESFF*DWIAIS
Trigger: GGAGATGGCAATCCAATCCAAGAAAAAGCTCTCCAC...CAGAATGCTCTTCAATTCACTGTTCATCAAACAGACTCTTCTTTGCCAACACAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR CAA 90 bp AGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACTTGGAGTCAAGGGTTCGGTTGTTATaGTCATCCATAATTCGAAAC +
Preference number: 5 (lower is better)
Translates to: SELKSILSLGVERNHLESRVRLL*SSIIRN
Trigger: GTTTCGAATTATGGATGACAATAACAACCGAACCCT...TGACTCCAAGTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR CAA 90 bp AGAGTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGGTGAGAAGAAACTCATaGAAGTCTATTGTTCCACTG +
Preference number: 5 (lower is better)
Translates to: RVCLMNSELKSILSLGVEVRRNS*KSIVPL
Trigger: CAGTGGAACAATAGACTTCAATGAGTTTCTTCTCAC...CTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGACTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS CCA 90 bp TTTCCTGAAGACTTGTTCCTCCGTCCATTCCCCATTTTGATACTTTaGATGATGTTTAGCGTTATAAACTTCACGAAGGTCTTCAATGGT +
Preference number: 5 (lower is better)
Translates to: FPEDLFLRPFPILIL*MMFSVINFTKVFNG
Trigger: ACCATTGAAGACCTTCGTGAAGTTTATAACGCTAAACATCATCCAAAGTATCAAAATGGGGAATGGACGGAGGAACAAGTCTTCAGGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042360.5
CDS TCA 90 bp ATCCATCTTTATCATAGGGTGAGTCAAAGTTATCCAGAAATTTCCTaGAGACTTGTTCCTCCGTCCATTCCCCATTTTGATACTTTGGAT +
Preference number: 5 (lower is better)
Translates to: IHLYHRVSQSYPEIS*RLVPPSIPHFDTLD
Trigger: ATCCAAAGTATCAAAATGGGGAATGGACGGAGGAACAAGTCTTCAGGAAATTTCTGGATAACTTTGACTCACCCTATGATAAAGATGGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042360.5
CDS-3UTR CAA 90 bp TTATTTCTGCCCTCTTGTCAGCCTAGAAAATACAGTGTGTTGGCAAAGAAGAGTCCTTTCAAAAATTCTTaGAAATCAAGGGTTCGGTTG +
Preference number: 5 (lower is better)
Translates to: LFLPSCQPRKYSVLAKKSPFKNS*KSRVRL
Trigger: CAACCGAACCCTTGATTTCAAAGAATTTTTGAAAGG...ACTCTTCTTTGCCAACACACTGTATTTTCTAGGCTGACAAGAGGGCAGAAATAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS-3UTR CAA 90 bp CAAAGAAGAGTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGCCTTTCAAAAATTCTTaGAAATCAAGGGTTCGGTTG +
Preference number: 5 (lower is better)
Translates to: QRRVCLMNSELKSILSLGPFKNS*KSRVRL
Trigger: CAACCGAACCCTTGATTTCAAAGAATTTTTGAAAGG...CCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGACTCTTCTTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS GCA 72 bp ATCAGTAGCTGTGGAGAGCTTTTTCTTGGATTGGATTaGCATCTCCCGGTCATGGCGCGCTGTCCCTGCCAT +
Preference number: 6 (lower is better)
Translates to: ISSCGELFLGLD*HLPVMARCPCH
Trigger: ATGGCAGGGACAGCGCGCCATGACCGGGAGATGGCAATCCAATCCAAGAAAAAGCTCTCCACAGCTACTGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS CAA 90 bp AACCGAAGTCTTTCAATAGGATCAGTAGCTGTGGAGAGCTTTTTCTaGGATTGGATTGCCATCTCCCGGTCATGGCGCGCTGTCCCTGCC +
Preference number: 6 (lower is better)
Translates to: NRSLSIGSVAVESFF*DWIAISRSWRAVPA
Trigger: GGCAGGGACAGCGCGCCATGACCGGGAGATGGCAATCCAATCCAAGAAAAAGCTCTCCACAGCTACTGATCCTATTGAAAGACTTCGGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS GCA 72 bp CATAATTCGAAACACTCTGCCAAGTCCTTTGATGCCTaGAGAACCTCTGGCCAGGCACTGCAACCGAAGTCT +
Preference number: 6 (lower is better)
Translates to: HNSKHSAKSFDA*RTSGQALQPKS
Trigger: AGACTTCGGTTGCAGTGCCTGGCCAGAGGTTCTGCAGGCATCAAAGGACTTGGCAGAGTGTTTCGAATTATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS CAA 72 bp TTGTCATCCATAATTCGAAACACTCTGCCAAGTCCTTaGATGCCTGCAGAACCTCTGGCCAGGCACTGCAAC +
Preference number: 6 (lower is better)
Translates to: LSSIIRNTLPSP*MPAEPLARHCN
Trigger: GTTGCAGTGCCTGGCCAGAGGTTCTGCAGGCATCAAAGGACTTGGCAGAGTGTTTCGAATTATGGATGACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS GCA 72 bp GAAGTACACATCTGTGTCAATGGATGCACTTACACCTaGATAGTAGTTCATGAATTCCTCGGGGGTCACCCT +
Preference number: 6 (lower is better)
Translates to: EVHICVNGCTYT*IVVHEFLGGHP
Trigger: AGGGTGACCCCCGAGGAATTCATGAACTACTATGCAGGTGTAAGTGCATCCATTGACACAGATGTGTACTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226688.2
CDS CAA 72 bp TCCTCGGGGGTCACCCTTAACGTGAGAAGAAACTCATaGAAGTCTATTGTTCCACTGCCGTCTCTATCGAAT +
Preference number: 6 (lower is better)
Translates to: SSGVTLNVRRNS*KSIVPLPSLSN
Trigger: ATTCGATAGAGACGGCAGTGGAACAATAGACTTCAATGAGTTTCTTCTCACGTTAAGGGTGACCCCCGAGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226688.2
CDS GCA 72 bp GAAGTACACATCTGTGTCAATGGATGCACTTACACCTaGATAGTAGTTCATGAATTCCTCGGGGGTCACCAA +
Preference number: 6 (lower is better)
Translates to: EVHICVNGCTYT*IVVHEFLGGHQ
Trigger: TTGGTGACCCCCGAGGAATTCATGAACTACTATGCAGGTGTAAGTGCATCCATTGACACAGATGTGTACTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000042360.5
CDS CAA 90 bp TTTCTGGCTCTGGACATTGGAGGCCTTAACGTGAGAAGAAACTCATaGAAGTCTATTGTTCCACTGCCGTCTCTATCGAATCTCTGGAAA +
Preference number: 6 (lower is better)
Translates to: FLALDIGGLNVRRNS*KSIVPLPSLSNLWK
Trigger: TTTCCAGAGATTCGATAGAGACGGCAGTGGAACAATAGACTTCAATGAGTTTCTTCTCACGTTAAGGCCTCCAATGTCCAGAGCCAGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042360.5
CDS CAA 90 bp TTCATGAATTCCTCGGGGGTCACCCTTAACGTGAGAAGAAACTCATaGAAGTCTATTGTTCCACTGCCGTCTCTATCGAATCTCTGGAAA +
Preference number: 6 (lower is better)
Translates to: FMNSSGVTLNVRRNS*KSIVPLPSLSNLWK
Trigger: TTTCCAGAGATTCGATAGAGACGGCAGTGGAACAATAGACTTCAATGAGTTTCTTCTCACGTTAAGGGTGACCCCCGAGGAATTCATGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226688.2
CDS CCA 72 bp AAGTCTATTGTTCCACTGCCGTCTCTATCGAATCTCTaGAAAAGTTCTTCTGCCTCCTCTTTTTCCATGACC +
Preference number: 6 (lower is better)
Translates to: KSIVPLPSLSNL*KSSSASSFSMT
Trigger: GGTCATGGAAAAAGAGGAGGCAGAAGAACTTTTCCAGAGATTCGATAGAGACGGCAGTGGAACAATAGACTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2
CDS CAA 72 bp CTGGACATTGGAGGCCTTAACGTGAGAAGAAACTCATaGAAGTCTATTGTTCCACTGCCGTCTCTATCGAAT +
Preference number: 6 (lower is better)
Translates to: LDIGGLNVRRNS*KSIVPLPSLSN
Trigger: ATTCGATAGAGACGGCAGTGGAACAATAGACTTCAATGAGTTTCTTCTCACGTTAAGGCCTCCAATGTCCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042360.5
CDS CCA 72 bp GACTTGTTCCTCCGTCCATTCCCCATTTTGATACTTTaGATGATGTTTAGCGTTATAAACTTCACGAAGGTC +
Preference number: 6 (lower is better)
Translates to: DLFLRPFPILIL*MMFSVINFTKV
Trigger: GACCTTCGTGAAGTTTATAACGCTAAACATCATCCAAAGTATCAAAATGGGGAATGGACGGAGGAACAAGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042360.5
CDS CAA 90 bp ATCCAGAAATTTCCTGAAGACTTGTTCCTCCGTCCATTCCCCATTTaGATACTTTGGATGATGTTTAGCGTTATAAACTTCACGAAGGTC +
Preference number: 6 (lower is better)
Translates to: IQKFPEDLFLRPFPI*ILWMMFSVINFTKV
Trigger: GACCTTCGTGAAGTTTATAACGCTAAACATCATCCAAAGTATCAAAATGGGGAATGGACGGAGGAACAAGTCTTCAGGAAATTTCTGGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042360.5
CDS TCA 72 bp TATCATAGGGTGAGTCAAAGTTATCCAGAAATTTCCTaGAGACTTGTTCCTCCGTCCATTCCCCATTTTGAT +
Preference number: 6 (lower is better)
Translates to: YHRVSQSYPEIS*RLVPPSIPHFD
Trigger: ATCAAAATGGGGAATGGACGGAGGAACAAGTCTTCAGGAAATTTCTGGATAACTTTGACTCACCCTATGATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042360.5
CDS CAA 72 bp TTTCCTGAAGACTTGTTCCTCCGTCCATTCCCCATTTaGATACTTTGGATGATGTTTAGCGTTATAAACTTC +
Preference number: 6 (lower is better)
Translates to: FPEDLFLRPFPI*ILWMMFSVINF
Trigger: GAAGTTTATAACGCTAAACATCATCCAAAGTATCAAAATGGGGAATGGACGGAGGAACAAGTCTTCAGGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042360.5
CDS CAA 90 bp TTTAAGCCTTTCAAAAATTCTTTGAAATCAAGGGTTCGGTTGTTATaGTCATCCATAATTCGAAACACTCTGCCAAGTCCTTTGATGCCT +
Preference number: 6 (lower is better)
Translates to: FKPFKNSLKSRVRLL*SSIIRNTLPSPLMP
Trigger: AGGCATCAAAGGACTTGGCAGAGTGTTTCGAATTATGGATGACAATAACAACCGAACCCTTGATTTCAAAGAATTTTTGAAAGGCTTAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000042360.5
ENSMUST00000226688.2