Pregenerated sensors for CAPSL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039676Ensembl transcript IDs: ENSMUST00000042360.5, ENSMUST00000226688.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | AGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACTaGGAGTCACGTGACTGCATGCATGGCCTGGTTTCCAGGGACAGG | + |
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Preference number: 2 (lower is better) Translates to: SELKSILSLGVERNH*ESRDCMHGLVSRDR Trigger: CCTGTCCCTGGAAACCAGGCCATGCATGCAGTCACGTGACTCCAAGTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| 3UTR CAA 90 bp | AGAAGAGTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTaGGGGGTAGAGCGTAATCACTTGGAGTCACGTGACTGCATGCAT | + |
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Preference number: 2 (lower is better) Translates to: RRVCLMNSELKSILS*GVERNHLESRDCMH Trigger: ATGCATGCAGTCACGTGACTCCAAGTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGACTCTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| 3UTR CAA 90 bp | AATACAGTGTGTTGGCAAAGAAGAGTCTGTTTGATGAACAGTGAATaGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACTTGGAG | + |
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Preference number: 2 (lower is better) Translates to: NTVCWQRRVCLMNSE*KSILSLGVERNHLE Trigger: CTCCAAGTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGACTCTTCTTTGCCAACACACTGTATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR CCA 90 bp | CGTAATCACTTGGAGTCACGTGACTGCATGCATGGCCTGGTTTCCAGGGACAGGAGCTTTTTCTTGGATTaGATTGCCATCTCCCGGTCA | + |
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Preference number: 4 (lower is better) Translates to: RNHLESRDCMHGLVSRDRSFFLD*IAISRS Trigger: TGACCGGGAGATGGCAATCCAATCCAAGAAAAAGCT...CCTGTCCCTGGAAACCAGGCCATGCATGCAGTCACGTGACTCCAAGTGATTACG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR TCA 90 bp | TTCTGCCCTCTTGTCAGCCTAGAAAATACAGTGTGTTGGCAAAGAAGAGTCTGTCTCTGCCAAGTCCTTTaGTGCCTGCAGAACCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: FCPLVSLENTVCWQRRVCLCQVL*CLQNLW Trigger: CCAGAGGTTCTGCAGGCATCAAAGGACTTGGCAGAG...ACAGACTCTTCTTTGCCAACACACTGTATTTTCTAGGCTGACAAGAGGGCAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR TCA 90 bp | GTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTCTCTGCCAAGTCCTTTaGTGCCTGCAGAACCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: VCLMNSELKSILSLGVERLCQVL*CLQNLW Trigger: CCAGAGGTTCTGCAGGCATCAAAGGACTTGGCAGAG...ACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR CCA 90 bp | AGAGTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGTGCCTGCAGAACCTCTaGCCAGGCACTGCAACCGAA | + |
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Preference number: 4 (lower is better) Translates to: RVCLMNSELKSILSLGVECLQNL*PGTATE Trigger: TTCGGTTGCAGTGCCTGGCCAGAGGTTCTGCAGGCA...CTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGACTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR TCA 90 bp | GTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTCTGCATAGTAGTTCATaGATTCCTCGGGGGTCACCC | + |
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Preference number: 4 (lower is better) Translates to: VCLMNSELKSILSLGVERLHSSS*IPRGSP Trigger: GGGTGACCCCCGAGGAATTCATGAACTACTATGCAG...ACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000226688.2 |
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| CDS-3UTR GCA 90 bp | AGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACTTGGAGTCAAAGTCCTTTGATGCCTaGAGAACCTCTGGCCAGGCA | + |
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Preference number: 4 (lower is better) Translates to: SELKSILSLGVERNHLESKSFDA*RTSGQA Trigger: TGCCTGGCCAGAGGTTCTGCAGGCATCAAAGGACTT...TGACTCCAAGTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR GCA 90 bp | TTCTGCCCTCTTGTCAGCCTAGAAAATACAGTGTGTTGGCAAAGAAGAGTCTGTAAGTCCTTTGATGCCTaGAGAACCTCTGGCCAGGCA | + |
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Preference number: 4 (lower is better) Translates to: FCPLVSLENTVCWQRRVCKSFDA*RTSGQA Trigger: TGCCTGGCCAGAGGTTCTGCAGGCATCAAAGGACTT...ACAGACTCTTCTTTGCCAACACACTGTATTTTCTAGGCTGACAAGAGGGCAGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR TCA 90 bp | AGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACTTGGAGTCACTGCATAGTAGTTCATaGATTCCTCGGGGGTCACCA | + |
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Preference number: 4 (lower is better) Translates to: SELKSILSLGVERNHLESLHSSS*IPRGSP Trigger: TGGTGACCCCCGAGGAATTCATGAACTACTATGCAG...TGACTCCAAGTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000042360.5 |
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| CDS-3UTR GCA 90 bp | AGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACTTGGAGTCACCTCTGGCCAGGCACTaGAACCGAAGTCTTTCAATA | + |
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Preference number: 4 (lower is better) Translates to: SELKSILSLGVERNHLESPLARH*NRSLSI Trigger: TATTGAAAGACTTCGGTTGCAGTGCCTGGCCAGAGG...TGACTCCAAGTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR GCA 90 bp | GTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTCCTCTGGCCAGGCACTaGAACCGAAGTCTTTCAATA | + |
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Preference number: 4 (lower is better) Translates to: VCLMNSELKSILSLGVERPLARH*NRSLSI Trigger: TATTGAAAGACTTCGGTTGCAGTGCCTGGCCAGAGG...ACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR CCA 90 bp | TTTCTGCCCTCTTGTCAGCCTAGAAAATACAGTGTGTTGGCAAAGAAGAGTCTGCCTCTTTTCTGGCTCTaGACATTGGAGGCCTTAACG | + |
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Preference number: 4 (lower is better) Translates to: FLPSCQPRKYSVLAKKSLPLFWL*TLEALT Trigger: CGTTAAGGCCTCCAATGTCCAGAGCCAGAAAAGAGG...CAGACTCTTCTTTGCCAACACACTGTATTTTCTAGGCTGACAAGAGGGCAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042360.5 |
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| CDS-3UTR TCA 90 bp | GTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTTATCCAGAAATTTCCTaGAGACTTGTTCCTCCGTCC | + |
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Preference number: 4 (lower is better) Translates to: VCLMNSELKSILSLGVERYPEIS*RLVPPS Trigger: GGACGGAGGAACAAGTCTTCAGGAAATTTCTGGATA...ACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042360.5 |
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| CDS-3UTR CCA 90 bp | TTTCTGCCCTCTTGTCAGCCTAGAAAATACAGTGTGTTGGCAAAGAAGAGTCTGTGGAGAGCTTTTTCTTaGATTGGATTGCCATCTCCC | + |
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Preference number: 4 (lower is better) Translates to: FLPSCQPRKYSVLAKKSLWRAFS*IGLPSP Trigger: GGGAGATGGCAATCCAATCCAAGAAAAAGCTCTCCA...CAGACTCTTCTTTGCCAACACACTGTATTTTCTAGGCTGACAAGAGGGCAGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| 3UTR CAA 72 bp | TGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTaGGGGGTAGAGCGTAATCACTTGGAGTCACGTGAC | + |
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Preference number: 4 (lower is better) Translates to: CLMNSELKSILS*GVERNHLESRD Trigger: GTCACGTGACTCCAAGTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR TCA 90 bp | GTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTCCTCCTCTTTTTCCATaGCCACAGCGTAATCATTTA | + |
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Preference number: 4 (lower is better) Translates to: VCLMNSELKSILSLGVERPPLFP*PQRNHL Trigger: TAAATGATTACGCTGTGGTCATGGAAAAAGAGGAGG...ACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR CCA 90 bp | TTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACAGCTTTTTCTTGGATTaGATTGCCATCTCCCGGTCA | + |
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Preference number: 4 (lower is better) Translates to: LMNSELKSILSLGVERNHSFFLD*IAISRS Trigger: TGACCGGGAGATGGCAATCCAATCCAAGAAAAAGCT...GTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR CCA 90 bp | TATTTCTGCCCTCTTGTCAGCCTAGAAAATACAGTGTGTTGGCAAAGAAGAGTCTGGAGAGCTTTTTCTTaGATTGGATTGCCATCTCCC | + |
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Preference number: 4 (lower is better) Translates to: YFCPLVSLENTVCWQRRVWRAFS*IGLPSP Trigger: GGGAGATGGCAATCCAATCCAAGAAAAAGCTCTCCA...GACTCTTCTTTGCCAACACACTGTATTTTCTAGGCTGACAAGAGGGCAGAAATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR CCA 90 bp | AGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACTTGGAGTCATCTCTATCGAATCTCTaGAAAAGTTCTTCTGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: SELKSILSLGVERNHLESSLSNL*KSSSAS Trigger: GGAGGCAGAAGAACTTTTCCAGAGATTCGATAGAGA...TGACTCCAAGTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR GCA 90 bp | GTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTATCTGTGTCAATGGATaGACTTACACCTGCATAGTA | + |
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Preference number: 4 (lower is better) Translates to: VCLMNSELKSILSLGVERICVNG*TYTCIV Trigger: TACTATGCAGGTGTAAGTGCATCCATTGACACAGAT...ACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR CCA 90 bp | TATTTCTGCCCTCTTGTCAGCCTAGAAAATACAGTGTGTTGGCAAAGAAGAGTCTCTCTATCGAATCTCTaGAAAAGTTCTTCTGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: YFCPLVSLENTVCWQRRVSLSNL*KSSSAS Trigger: GGAGGCAGAAGAACTTTTCCAGAGATTCGATAGAGA...GACTCTTCTTTGCCAACACACTGTATTTTCTAGGCTGACAAGAGGGCAGAAATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR CCA 90 bp | TTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACACACATCTGTGTCAATaGATGCACTTACACCTGCAT | + |
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Preference number: 4 (lower is better) Translates to: LMNSELKSILSLGVERNHTHLCQ*MHLHLH Trigger: ATGCAGGTGTAAGTGCATCCATTGACACAGATGTGT...GTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR CCA 90 bp | AGAGTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGACACATCTGTGTCAATaGATGCACTTACACCTGCAT | + |
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Preference number: 4 (lower is better) Translates to: RVCLMNSELKSILSLGVETHLCQ*MHLHLH Trigger: ATGCAGGTGTAAGTGCATCCATTGACACAGATGTGT...CTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGACTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| 3UTR CAA 72 bp | TGTTGGCAAAGAAGAGTCTGTTTGATGAACAGTGAATaGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAAT | + |
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Preference number: 4 (lower is better) Translates to: CWQRRVCLMNSE*KSILSLGVERN Trigger: ATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGACTCTTCTTTGCCAACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR TCA 90 bp | CAAAGAAGAGTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGCCTCCTCTTTTTCCATaGCCACAGCGTAATCATTTA | + |
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Preference number: 4 (lower is better) Translates to: QRRVCLMNSELKSILSLGPPLFP*PQRNHL Trigger: TAAATGATTACGCTGTGGTCATGGAAAAAGAGGAGG...CCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGACTCTTCTTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR GCA 90 bp | TTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACGGATGCACTTACACCTaGATAGTAGTTCATGAATTC | + |
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Preference number: 4 (lower is better) Translates to: LMNSELKSILSLGVERNHGCTYT*IVVHEF Trigger: GAATTCATGAACTACTATGCAGGTGTAAGTGCATCC...GTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR GCA 90 bp | TATTTCTGCCCTCTTGTCAGCCTAGAAAATACAGTGTGTTGGCAAAGAAGAGTCATCTGTGTCAATGGATaGACTTACACCTGCATAGTA | + |
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Preference number: 4 (lower is better) Translates to: YFCPLVSLENTVCWQRRVICVNG*TYTCIV Trigger: TACTATGCAGGTGTAAGTGCATCCATTGACACAGAT...GACTCTTCTTTGCCAACACACTGTATTTTCTAGGCTGACAAGAGGGCAGAAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR CAA 90 bp | CGTAATCACTTGGAGTCACGTGACTGCATGCATGGCCTGGTTTCCAGGGACAGGGAGCTTTTTCTTGGATaGGATTGCCATCTCCCGGTC | + |
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Preference number: 5 (lower is better) Translates to: RNHLESRDCMHGLVSRDRELFLG*DCHLPV Trigger: GACCGGGAGATGGCAATCCAATCCAAGAAAAAGCTC...CCTGTCCCTGGAAACCAGGCCATGCATGCAGTCACGTGACTCCAAGTGATTACG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS GCA 90 bp | ACTCTGCCAAGTCCTTTGATGCCTGCAGAACCTCTGGCCAGGCACTaGAACCGAAGTCTTTCAATAGGATCAGTAGCTGTGGAGAGCTTT | + |
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Preference number: 5 (lower is better) Translates to: TLPSPLMPAEPLARH*NRSLSIGSVAVESF Trigger: AAAGCTCTCCACAGCTACTGATCCTATTGAAAGACTTCGGTTGCAGTGCCTGGCCAGAGGTTCTGCAGGCATCAAAGGACTTGGCAGAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR CAA 90 bp | CGTAATCACTTGGAGTCACGTGACTGCATGCATGGCCTGGTTTCCAGGGACAGGGTGAGAAGAAACTCATaGAAGTCTATTGTTCCACTG | + |
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Preference number: 5 (lower is better) Translates to: RNHLESRDCMHGLVSRDRVRRNS*KSIVPL Trigger: CAGTGGAACAATAGACTTCAATGAGTTTCTTCTCAC...CCTGTCCCTGGAAACCAGGCCATGCATGCAGTCACGTGACTCCAAGTGATTACG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR CAA 90 bp | AGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACTTGGAGTCAGAGCTTTTTCTTGGATaGGATTGCCATCTCCCGGTC | + |
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Preference number: 5 (lower is better) Translates to: SELKSILSLGVERNHLESELFLG*DCHLPV Trigger: GACCGGGAGATGGCAATCCAATCCAAGAAAAAGCTC...TGACTCCAAGTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR CAA 90 bp | TTCTGCCCTCTTGTCAGCCTAGAAAATACAGTGTGTTGGCAAAGAAGAGTCTGTAAATTTCCTGAAGACTaGTTCCTCCGTCCATTCCCC | + |
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Preference number: 5 (lower is better) Translates to: FCPLVSLENTVCWQRRVCKFPED*FLRPFP Trigger: GGGGAATGGACGGAGGAACAAGTCTTCAGGAAATTT...ACAGACTCTTCTTTGCCAACACACTGTATTTTCTAGGCTGACAAGAGGGCAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042360.5 |
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| CDS-3UTR CAA 90 bp | AGAGTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGGTGGAGAGCTTTTTCTaGGATTGGATTGCCATCTCC | + |
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Preference number: 5 (lower is better) Translates to: RVCLMNSELKSILSLGVEVESFF*DWIAIS Trigger: GGAGATGGCAATCCAATCCAAGAAAAAGCTCTCCAC...CTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGACTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS TCA 90 bp | GTTCATGAATTCCTCGGGGGTCACCAATCCATCTTTATCATAGGGTaGGTCAAAGTTATCCAGAAATTTCCTGAAGACTTGTTCCTCCGT | + |
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Preference number: 5 (lower is better) Translates to: VHEFLGGHQSIFIIG*VKVIQKFPEDLFLR Trigger: ACGGAGGAACAAGTCTTCAGGAAATTTCTGGATAACTTTGACTCACCCTATGATAAAGATGGATTGGTGACCCCCGAGGAATTCATGAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042360.5 |
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| CDS GCA 90 bp | CATGATGATGAAGTACACATCTGTGTCAATGGATGCACTTACACCTaGATAGTAGTTCATGAATTCCTCGGGGGTCACCAATCCATCTTT | + |
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Preference number: 5 (lower is better) Translates to: HDDEVHICVNGCTYT*IVVHEFLGGHQSIF Trigger: AAAGATGGATTGGTGACCCCCGAGGAATTCATGAACTACTATGCAGGTGTAAGTGCATCCATTGACACAGATGTGTACTTCATCATCATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042360.5 |
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| CDS-3UTR CAA 90 bp | GTGTGTTGGCAAAGAAGAGTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGGTGGAGAGCTTTTTCTaGGATTGGATTGCCATCTCC | + |
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Preference number: 5 (lower is better) Translates to: VCWQRRVCLMNSELKSILVESFF*DWIAIS Trigger: GGAGATGGCAATCCAATCCAAGAAAAAGCTCTCCAC...CAGAATGCTCTTCAATTCACTGTTCATCAAACAGACTCTTCTTTGCCAACACAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR CAA 90 bp | AGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGCGTAATCACTTGGAGTCAAGGGTTCGGTTGTTATaGTCATCCATAATTCGAAAC | + |
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Preference number: 5 (lower is better) Translates to: SELKSILSLGVERNHLESRVRLL*SSIIRN Trigger: GTTTCGAATTATGGATGACAATAACAACCGAACCCT...TGACTCCAAGTGATTACGCTCTACCCCCAAACTCAGAATGCTCTTCAATTCACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR CAA 90 bp | AGAGTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGGTAGAGGTGAGAAGAAACTCATaGAAGTCTATTGTTCCACTG | + |
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Preference number: 5 (lower is better) Translates to: RVCLMNSELKSILSLGVEVRRNS*KSIVPL Trigger: CAGTGGAACAATAGACTTCAATGAGTTTCTTCTCAC...CTCTACCCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGACTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS CCA 90 bp | TTTCCTGAAGACTTGTTCCTCCGTCCATTCCCCATTTTGATACTTTaGATGATGTTTAGCGTTATAAACTTCACGAAGGTCTTCAATGGT | + |
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Preference number: 5 (lower is better) Translates to: FPEDLFLRPFPILIL*MMFSVINFTKVFNG Trigger: ACCATTGAAGACCTTCGTGAAGTTTATAACGCTAAACATCATCCAAAGTATCAAAATGGGGAATGGACGGAGGAACAAGTCTTCAGGAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042360.5 |
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| CDS TCA 90 bp | ATCCATCTTTATCATAGGGTGAGTCAAAGTTATCCAGAAATTTCCTaGAGACTTGTTCCTCCGTCCATTCCCCATTTTGATACTTTGGAT | + |
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Preference number: 5 (lower is better) Translates to: IHLYHRVSQSYPEIS*RLVPPSIPHFDTLD Trigger: ATCCAAAGTATCAAAATGGGGAATGGACGGAGGAACAAGTCTTCAGGAAATTTCTGGATAACTTTGACTCACCCTATGATAAAGATGGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042360.5 |
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| CDS-3UTR CAA 90 bp | TTATTTCTGCCCTCTTGTCAGCCTAGAAAATACAGTGTGTTGGCAAAGAAGAGTCCTTTCAAAAATTCTTaGAAATCAAGGGTTCGGTTG | + |
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Preference number: 5 (lower is better) Translates to: LFLPSCQPRKYSVLAKKSPFKNS*KSRVRL Trigger: CAACCGAACCCTTGATTTCAAAGAATTTTTGAAAGG...ACTCTTCTTTGCCAACACACTGTATTTTCTAGGCTGACAAGAGGGCAGAAATAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS-3UTR CAA 90 bp | CAAAGAAGAGTCTGTTTGATGAACAGTGAATTGAAGAGCATTCTGAGTTTGGGGCCTTTCAAAAATTCTTaGAAATCAAGGGTTCGGTTG | + |
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Preference number: 5 (lower is better) Translates to: QRRVCLMNSELKSILSLGPFKNS*KSRVRL Trigger: CAACCGAACCCTTGATTTCAAAGAATTTTTGAAAGG...CCCCAAACTCAGAATGCTCTTCAATTCACTGTTCATCAAACAGACTCTTCTTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS GCA 72 bp | ATCAGTAGCTGTGGAGAGCTTTTTCTTGGATTGGATTaGCATCTCCCGGTCATGGCGCGCTGTCCCTGCCAT | + |
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Preference number: 6 (lower is better) Translates to: ISSCGELFLGLD*HLPVMARCPCH Trigger: ATGGCAGGGACAGCGCGCCATGACCGGGAGATGGCAATCCAATCCAAGAAAAAGCTCTCCACAGCTACTGAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS CAA 90 bp | AACCGAAGTCTTTCAATAGGATCAGTAGCTGTGGAGAGCTTTTTCTaGGATTGGATTGCCATCTCCCGGTCATGGCGCGCTGTCCCTGCC | + |
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Preference number: 6 (lower is better) Translates to: NRSLSIGSVAVESFF*DWIAISRSWRAVPA Trigger: GGCAGGGACAGCGCGCCATGACCGGGAGATGGCAATCCAATCCAAGAAAAAGCTCTCCACAGCTACTGATCCTATTGAAAGACTTCGGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS GCA 72 bp | CATAATTCGAAACACTCTGCCAAGTCCTTTGATGCCTaGAGAACCTCTGGCCAGGCACTGCAACCGAAGTCT | + |
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Preference number: 6 (lower is better) Translates to: HNSKHSAKSFDA*RTSGQALQPKS Trigger: AGACTTCGGTTGCAGTGCCTGGCCAGAGGTTCTGCAGGCATCAAAGGACTTGGCAGAGTGTTTCGAATTATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS CAA 72 bp | TTGTCATCCATAATTCGAAACACTCTGCCAAGTCCTTaGATGCCTGCAGAACCTCTGGCCAGGCACTGCAAC | + |
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Preference number: 6 (lower is better) Translates to: LSSIIRNTLPSP*MPAEPLARHCN Trigger: GTTGCAGTGCCTGGCCAGAGGTTCTGCAGGCATCAAAGGACTTGGCAGAGTGTTTCGAATTATGGATGACAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS GCA 72 bp | GAAGTACACATCTGTGTCAATGGATGCACTTACACCTaGATAGTAGTTCATGAATTCCTCGGGGGTCACCCT | + |
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Preference number: 6 (lower is better) Translates to: EVHICVNGCTYT*IVVHEFLGGHP Trigger: AGGGTGACCCCCGAGGAATTCATGAACTACTATGCAGGTGTAAGTGCATCCATTGACACAGATGTGTACTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000226688.2 |
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| CDS CAA 72 bp | TCCTCGGGGGTCACCCTTAACGTGAGAAGAAACTCATaGAAGTCTATTGTTCCACTGCCGTCTCTATCGAAT | + |
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Preference number: 6 (lower is better) Translates to: SSGVTLNVRRNS*KSIVPLPSLSN Trigger: ATTCGATAGAGACGGCAGTGGAACAATAGACTTCAATGAGTTTCTTCTCACGTTAAGGGTGACCCCCGAGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000226688.2 |
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| CDS GCA 72 bp | GAAGTACACATCTGTGTCAATGGATGCACTTACACCTaGATAGTAGTTCATGAATTCCTCGGGGGTCACCAA | + |
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Preference number: 6 (lower is better) Translates to: EVHICVNGCTYT*IVVHEFLGGHQ Trigger: TTGGTGACCCCCGAGGAATTCATGAACTACTATGCAGGTGTAAGTGCATCCATTGACACAGATGTGTACTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000042360.5 |
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| CDS CAA 90 bp | TTTCTGGCTCTGGACATTGGAGGCCTTAACGTGAGAAGAAACTCATaGAAGTCTATTGTTCCACTGCCGTCTCTATCGAATCTCTGGAAA | + |
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Preference number: 6 (lower is better) Translates to: FLALDIGGLNVRRNS*KSIVPLPSLSNLWK Trigger: TTTCCAGAGATTCGATAGAGACGGCAGTGGAACAATAGACTTCAATGAGTTTCTTCTCACGTTAAGGCCTCCAATGTCCAGAGCCAGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042360.5 |
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| CDS CAA 90 bp | TTCATGAATTCCTCGGGGGTCACCCTTAACGTGAGAAGAAACTCATaGAAGTCTATTGTTCCACTGCCGTCTCTATCGAATCTCTGGAAA | + |
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Preference number: 6 (lower is better) Translates to: FMNSSGVTLNVRRNS*KSIVPLPSLSNLWK Trigger: TTTCCAGAGATTCGATAGAGACGGCAGTGGAACAATAGACTTCAATGAGTTTCTTCTCACGTTAAGGGTGACCCCCGAGGAATTCATGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000226688.2 |
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| CDS CCA 72 bp | AAGTCTATTGTTCCACTGCCGTCTCTATCGAATCTCTaGAAAAGTTCTTCTGCCTCCTCTTTTTCCATGACC | + |
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Preference number: 6 (lower is better) Translates to: KSIVPLPSLSNL*KSSSASSFSMT Trigger: GGTCATGGAAAAAGAGGAGGCAGAAGAACTTTTCCAGAGATTCGATAGAGACGGCAGTGGAACAATAGACTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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| CDS CAA 72 bp | CTGGACATTGGAGGCCTTAACGTGAGAAGAAACTCATaGAAGTCTATTGTTCCACTGCCGTCTCTATCGAAT | + |
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Preference number: 6 (lower is better) Translates to: LDIGGLNVRRNS*KSIVPLPSLSN Trigger: ATTCGATAGAGACGGCAGTGGAACAATAGACTTCAATGAGTTTCTTCTCACGTTAAGGCCTCCAATGTCCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042360.5 |
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| CDS CCA 72 bp | GACTTGTTCCTCCGTCCATTCCCCATTTTGATACTTTaGATGATGTTTAGCGTTATAAACTTCACGAAGGTC | + |
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Preference number: 6 (lower is better) Translates to: DLFLRPFPILIL*MMFSVINFTKV Trigger: GACCTTCGTGAAGTTTATAACGCTAAACATCATCCAAAGTATCAAAATGGGGAATGGACGGAGGAACAAGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042360.5 |
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| CDS CAA 90 bp | ATCCAGAAATTTCCTGAAGACTTGTTCCTCCGTCCATTCCCCATTTaGATACTTTGGATGATGTTTAGCGTTATAAACTTCACGAAGGTC | + |
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Preference number: 6 (lower is better) Translates to: IQKFPEDLFLRPFPI*ILWMMFSVINFTKV Trigger: GACCTTCGTGAAGTTTATAACGCTAAACATCATCCAAAGTATCAAAATGGGGAATGGACGGAGGAACAAGTCTTCAGGAAATTTCTGGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042360.5 |
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| CDS TCA 72 bp | TATCATAGGGTGAGTCAAAGTTATCCAGAAATTTCCTaGAGACTTGTTCCTCCGTCCATTCCCCATTTTGAT | + |
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Preference number: 6 (lower is better) Translates to: YHRVSQSYPEIS*RLVPPSIPHFD Trigger: ATCAAAATGGGGAATGGACGGAGGAACAAGTCTTCAGGAAATTTCTGGATAACTTTGACTCACCCTATGATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042360.5 |
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| CDS CAA 72 bp | TTTCCTGAAGACTTGTTCCTCCGTCCATTCCCCATTTaGATACTTTGGATGATGTTTAGCGTTATAAACTTC | + |
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Preference number: 6 (lower is better) Translates to: FPEDLFLRPFPI*ILWMMFSVINF Trigger: GAAGTTTATAACGCTAAACATCATCCAAAGTATCAAAATGGGGAATGGACGGAGGAACAAGTCTTCAGGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042360.5 |
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| CDS CAA 90 bp | TTTAAGCCTTTCAAAAATTCTTTGAAATCAAGGGTTCGGTTGTTATaGTCATCCATAATTCGAAACACTCTGCCAAGTCCTTTGATGCCT | + |
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Preference number: 6 (lower is better) Translates to: FKPFKNSLKSRVRLL*SSIIRNTLPSPLMP Trigger: AGGCATCAAAGGACTTGGCAGAGTGTTTCGAATTATGGATGACAATAACAACCGAACCCTTGATTTCAAAGAATTTTTGAAAGGCTTAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000042360.5 ENSMUST00000226688.2 |
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