Pregenerated sensors for CAPNS2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078144Ensembl transcript IDs: ENSMUST00000104947.5
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCTGGTGGGTGGGATCTGAGCTGTGGCTCATGTAGTAAGGCGTTCTaGAGTCCTGTCCTCCAGGGAGGGTCTCTACCTCTCTGCATCCAT | + |
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Preference number: 1 (lower is better) Translates to: AGGWDLSCGSCSKAF*SPVLQGGSLPLCIH Trigger: ATGGATGCAGAGAGGTAGAGACCCTCCCTGGAGGACAGGACTGCAGAACGCCTTACTACATGAGCCACAGCTCAGATCCCACCCACCAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| 3UTR CCA 90 bp | ATGCAGCATTATAAAAGAGCCCACCAGGAAATGGTAGCTGGTGGGTaGGATCTGAGCTGTGGCTCATGTAGTAAGGCGTTCTGCAGTCCT | + |
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Preference number: 1 (lower is better) Translates to: MQHYKRAHQEMVAGG*DLSCGSCSKAFCSP Trigger: AGGACTGCAGAACGCCTTACTACATGAGCCACAGCTCAGATCCCACCCACCAGCTACCATTTCCTGGTGGGCTCTTTTATAATGCTGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| 3UTR GCA 72 bp | TGGGATCTGAGCTGTGGCTCATGTAGTAAGGCGTTCTaGAGTCCTGTCCTCCAGGGAGGGTCTCTACCTCTC | + |
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Preference number: 3 (lower is better) Translates to: WDLSCGSCSKAF*SPVLQGGSLPL Trigger: GAGAGGTAGAGACCCTCCCTGGAGGACAGGACTGCAGAACGCCTTACTACATGAGCCACAGCTCAGATCCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| 3UTR CCA 72 bp | TATAAAAGAGCCCACCAGGAAATGGTAGCTGGTGGGTaGGATCTGAGCTGTGGCTCATGTAGTAAGGCGTTC | + |
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Preference number: 3 (lower is better) Translates to: YKRAHQEMVAGG*DLSCGSCSKAF Trigger: GAACGCCTTACTACATGAGCCACAGCTCAGATCCCACCCACCAGCTACCATTTCCTGGTGGGCTCTTTTATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR CCA 90 bp | GTAGCTGGTGGGTGGGATCTGAGCTGTGGCTCATGTAGTAAGGCGTTCTGCAGTAGCCCGCTGCCTGCATaGCCCCGTGCAGCTGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: VAGGWDLSCGSCSKAFCSSPLPA*PRAAGS Trigger: GCTCCCAGCTGCACGGGGCCATGCAGGCAGCGGGCT...ACTGCAGAACGCCTTACTACATGAGCCACAGCTCAGATCCCACCCACCAGCTAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR GCA 90 bp | ATGGTAGCTGGTGGGTGGGATCTGAGCTGTGGCTCATGTAGTAAGGCGTTCTGCGCCTGCATGGCCCCGTaGAGCTGGGAGCTTCCGAGG | + |
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Preference number: 4 (lower is better) Translates to: MVAGGWDLSCGSCSKAFCACMAP*SWELPR Trigger: CCTCGGAAGCTCCCAGCTGCACGGGGCCATGCAGGC...GCAGAACGCCTTACTACATGAGCCACAGCTCAGATCCCACCCACCAGCTACCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR CCA 90 bp | AGAGCCCACCAGGAAATGGTAGCTGGTGGGTGGGATCTGAGCTGTGGCTCATGTTTGGGGAGGCGGCTCTaGGGTGTACTGAGCTGCGGC | + |
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Preference number: 4 (lower is better) Translates to: RAHQEMVAGGWDLSCGSCLGRRL*GVLSCG Trigger: GCCGCAGCTCAGTACACCCCAGAGCCGCCTCCCCAA...ACATGAGCCACAGCTCAGATCCCACCCACCAGCTACCATTTCCTGGTGGGCTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR GCA 90 bp | TGTAGTAAGGCGTTCTGCAGTCCTGTCCTCCAGGGAGGGTCTCTACCTCTCTGCGGATTCCCCCGATGTTaGCCCCGCCTGCTCTTGCCT | + |
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Preference number: 4 (lower is better) Translates to: CSKAFCSPVLQGGSLPLCGFPRC*PRLLLP Trigger: AGGCAAGAGCAGGCGGGGGCAACATCGGGGGAATCC...GCAGAGAGGTAGAGACCCTCCCTGGAGGACAGGACTGCAGAACGCCTTACTACA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR GCA 90 bp | CACCAGGAAATGGTAGCTGGTGGGTGGGATCTGAGCTGTGGCTCATGTAGTAAGGCCCCCGCCTGCTCTTaGCTGACCACCTCCTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: HQEMVAGGWDLSCGSCSKAPACS*LTTSSK Trigger: CTTGGAGGAGGTGGTCAGGCAAGAGCAGGCGGGGGC...CTTACTACATGAGCCACAGCTCAGATCCCACCCACCAGCTACCATTTCCTGGTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR TCA 90 bp | CACCAGGAAATGGTAGCTGGTGGGTGGGATCTGAGCTGTGGCTCATGTAGTAAGCCGCCTGCTCTTGCCTaGCCACCTCCTCCAAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: HQEMVAGGWDLSCGSCSKPPALA*PPPPRR Trigger: CCTTCTTGGAGGAGGTGGTCAGGCAAGAGCAGGCGG...CTTACTACATGAGCCACAGCTCAGATCCCACCCACCAGCTACCATTTCCTGGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR TCA 90 bp | GTAAGGCGTTCTGCAGTCCTGTCCTCCAGGGAGGGTCTCTACCTCTCTGCATCCGACTTCCTCACTTTCTaGGGCCTCCACGACGGTAAA | + |
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Preference number: 4 (lower is better) Translates to: VRRSAVLSSREGLYLSASDFLTF*GLHDGK Trigger: TTTACCGTCGTGGAGGCCTCAGAAAGTGAGGAAGTC...GGATGCAGAGAGGTAGAGACCCTCCCTGGAGGACAGGACTGCAGAACGCCTTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR CCA 90 bp | TGTAGTAAGGCGTTCTGCAGTCCTGTCCTCCAGGGAGGGTCTCTACCTCTCTGCCCGAGGGAGCCAGAATaGTCACTGTCGTACTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: CSKAFCSPVLQGGSLPLCPREPE*SLSYCL Trigger: CAAGCAGTACGACAGTGACCATTCTGGCTCCCTCGG...GCAGAGAGGTAGAGACCCTCCCTGGAGGACAGGACTGCAGAACGCCTTACTACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR TCA 90 bp | AAGAGCCCACCAGGAAATGGTAGCTGGTGGGTGGGATCTGAGCTGTGGCTCATGTACAGGTATCAAGGCTaGAGCCCTCTGTCTTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: KSPPGNGSWWVGSELWLMYRYQG*SPLSSA Trigger: AGCTGAAGACAGAGGGCTTCAGCCTTGATACCTGTA...CATGAGCCACAGCTCAGATCCCACCCACCAGCTACCATTTCCTGGTGGGCTCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR CCA 90 bp | CAGGAAATGGTAGCTGGTGGGTGGGATCTGAGCTGTGGCTCATGTAGTAAGGCGGCAGCCATTCTCGGATaGACACCTGAATCAGGCCAT | + |
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Preference number: 4 (lower is better) Translates to: QEMVAGGWDLSCGSCSKAAAILG*TPESGH Trigger: ATGGCCTGATTCAGGTGTCCATCCGAGAATGGCTGC...CGCCTTACTACATGAGCCACAGCTCAGATCCCACCCACCAGCTACCATTTCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR TCA 90 bp | CACCAGGAAATGGTAGCTGGTGGGTGGGATCTGAGCTGTGGCTCATGTAGTAAGGCTGCCGAAAACGTCTaGCTTCCTCACTTTCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: HQEMVAGGWDLSCGSCSKAAENV*LPHFLR Trigger: CCTCAGAAAGTGAGGAAGTCAGACGTTTTCGGCAGC...CTTACTACATGAGCCACAGCTCAGATCCCACCCACCAGCTACCATTTCCTGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR TCA 90 bp | GTAAGGCGTTCTGCAGTCCTGTCCTCCAGGGAGGGTCTCTACCTCTCTGCATCCCACTGTCGTACTGCTTaGAAACACACTGCCATTTCT | + |
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Preference number: 4 (lower is better) Translates to: VRRSAVLSSREGLYLSASHCRTA*KHTAIS Trigger: AGAAATGGCAGTGTGTTTTCAAGCAGTACGACAGTG...GGATGCAGAGAGGTAGAGACCCTCCCTGGAGGACAGGACTGCAGAACGCCTTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR GCA 90 bp | GTAAGGCGTTCTGCAGTCCTGTCCTCCAGGGAGGGTCTCTACCTCTCTGCATCCTGGTCACTGTCGTACTaGTTGAAAACACACTGCCAT | + |
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Preference number: 4 (lower is better) Translates to: VRRSAVLSSREGLYLSASWSLSY*LKTHCH Trigger: ATGGCAGTGTGTTTTCAAGCAGTACGACAGTGACCA...GGATGCAGAGAGGTAGAGACCCTCCCTGGAGGACAGGACTGCAGAACGCCTTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR GCA 90 bp | ACTATGGTCAGGAATATGCAGCATTATAAAAGAGCCCACCAGGAAATGGTAGCTTGGAAGCCCGCTGCCTaGATGGCCCCGTGCAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: TMVRNMQHYKRAHQEMVAWKPAA*MAPCSW Trigger: CCAGCTGCACGGGGCCATGCAGGCAGCGGGCTTCCA...AGCTACCATTTCCTGGTGGGCTCTTTTATAATGCTGCATATTCCTGACCATAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR GCA 90 bp | GGCTCATGTAGTAAGGCGTTCTGCAGTCCTGTCCTCCAGGGAGGGTCTCTACCTAGCTGTGTAAATTGCTaGCGAAAACGTCTGACTTCC | + |
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Preference number: 4 (lower is better) Translates to: GSCSKAFCSPVLQGGSLPSCVNC*RKRLTS Trigger: GGAAGTCAGACGTTTTCGGCAGCAATTTACACAGCT...AGGTAGAGACCCTCCCTGGAGGACAGGACTGCAGAACGCCTTACTACATGAGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR GCA 90 bp | TATAAAAGAGCCCACCAGGAAATGGTAGCTGGTGGGTGGGATCTGAGCTGTGGCGAATACATGGTCAGCTaGAGCCATTCTCGGATGGAC | + |
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Preference number: 4 (lower is better) Translates to: YKRAHQEMVAGGWDLSCGEYMVS*SHSRMD Trigger: GTCCATCCGAGAATGGCTGCAGCTGACCATGTATTC...GCCACAGCTCAGATCCCACCCACCAGCTACCATTTCCTGGTGGGCTCTTTTATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR TCA 90 bp | ATGGTAGCTGGTGGGTGGGATCTGAGCTGTGGCTCATGTAGTAAGGCGTTCTGCCACACTGCCATTTCTTaGTGTTGTTCCACAGGTACT | + |
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Preference number: 4 (lower is better) Translates to: MVAGGWDLSCGSCSKAFCHTAIS*CCSTGT Trigger: AGTACCTGTGGAACAACATCAAGAAATGGCAGTGTG...GCAGAACGCCTTACTACATGAGCCACAGCTCAGATCCCACCCACCAGCTACCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR GCA 90 bp | CAGACTATGGTCAGGAATATGCAGCATTATAAAAGAGCCCACCAGGAAATGGTAGATGTTGCCCCCGCCTaGTCTTGCCTGACCACCTCC | + |
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Preference number: 4 (lower is better) Translates to: QTMVRNMQHYKRAHQEMVDVAPA*SCLTTS Trigger: GGAGGTGGTCAGGCAAGAGCAGGCGGGGGCAACATC...TACCATTTCCTGGTGGGCTCTTTTATAATGCTGCATATTCCTGACCATAGTCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR GCA 90 bp | GCACAGACTATGGTCAGGAATATGCAGCATTATAAAAGAGCCCACCAGGAAATGTCCACGACGGTAAAATaGTGCTGTTGGGGAGGCGGC | + |
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Preference number: 4 (lower is better) Translates to: AQTMVRNMQHYKRAHQEMSTTVK*CCWGGG Trigger: GCCGCCTCCCCAACAGCAGCATTTTACCGTCGTGGA...CATTTCCTGGTGGGCTCTTTTATAATGCTGCATATTCCTGACCATAGTCTGTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR GCA 90 bp | GTAAGGCGTTCTGCAGTCCTGTCCTCCAGGGAGGGTCTCTACCTCTCTGCATCCGTCTTCAGCTCTTTATaGTTAGAAAGGACTTTGTTG | + |
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Preference number: 4 (lower is better) Translates to: VRRSAVLSSREGLYLSASVFSSL*LERTLL Trigger: CAACAAAGTCCTTTCTAAGCATAAAGAGCTGAAGAC...GGATGCAGAGAGGTAGAGACCCTCCCTGGAGGACAGGACTGCAGAACGCCTTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR GCA 90 bp | TGTAGTAAGGCGTTCTGCAGTCCTGTCCTCCAGGGAGGGTCTCTACCTCTCTGCTGCTTGAAAACACACTaGCATTTCTTGATGTTGTTC | + |
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Preference number: 4 (lower is better) Translates to: CSKAFCSPVLQGGSLPLCCLKTH*HFLMLF Trigger: GAACAACATCAAGAAATGGCAGTGTGTTTTCAAGCA...GCAGAGAGGTAGAGACCCTCCCTGGAGGACAGGACTGCAGAACGCCTTACTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR CCA 90 bp | ACTATGGTCAGGAATATGCAGCATTATAAAAGAGCCCACCAGGAAATGGTAGCTGTAAAATGCTGCTGTTaGGGAGGCGGCTCTGGGGTG | + |
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Preference number: 4 (lower is better) Translates to: TMVRNMQHYKRAHQEMVAVKCCC*GGGSGV Trigger: CACCCCAGAGCCGCCTCCCCAACAGCAGCATTTTAC...AGCTACCATTTCCTGGTGGGCTCTTTTATAATGCTGCATATTCCTGACCATAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR GCA 90 bp | ACTATGGTCAGGAATATGCAGCATTATAAAAGAGCCCACCAGGAAATGGTAGCTGCCAGCTGTGTAAATTaGTGCCGAAAACGTCTGACT | + |
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Preference number: 4 (lower is better) Translates to: TMVRNMQHYKRAHQEMVAASCVN*CRKRLT Trigger: AGTCAGACGTTTTCGGCAGCAATTTACACAGCTGGC...AGCTACCATTTCCTGGTGGGCTCTTTTATAATGCTGCATATTCCTGACCATAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS CCA 90 bp | TGCTCATTGAGCTGGAAGCCCGCTGCCTGCATGGCCCCGTGCAGCTaGGAGCTTCCGAGGGAGCCAGAATGGTCACTGTCGTACTGCTTG | + |
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Preference number: 5 (lower is better) Translates to: CSLSWKPAACMAPCS*ELPREPEWSLSYCL Trigger: CAAGCAGTACGACAGTGACCATTCTGGCTCCCTCGGAAGCTCCCAGCTGCACGGGGCCATGCAGGCAGCGGGCTTCCAGCTCAATGAGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS CCA 90 bp | GCCTGCATGGCCCCGTGCAGCTGGGAGCTTCCGAGGGAGCCAGAATaGTCACTGTCGTACTGCTTGAAAACACACTGCCATTTCTTGATG | + |
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Preference number: 5 (lower is better) Translates to: ACMAPCSWELPREPE*SLSYCLKTHCHFLM Trigger: CATCAAGAAATGGCAGTGTGTTTTCAAGCAGTACGACAGTGACCATTCTGGCTCCCTCGGAAGCTCCCAGCTGCACGGGGCCATGCAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR CAA 90 bp | ACTATGGTCAGGAATATGCAGCATTATAAAAGAGCCCACCAGGAAATGGTAGCTAGGATTCCCCCGATGTaGCCCCCGCCTGCTCTTGCC | + |
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Preference number: 5 (lower is better) Translates to: TMVRNMQHYKRAHQEMVARIPPM*PPPALA Trigger: GGCAAGAGCAGGCGGGGGCAACATCGGGGGAATCCT...AGCTACCATTTCCTGGTGGGCTCTTTTATAATGCTGCATATTCCTGACCATAGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR CAA 90 bp | CACCAGGAAATGGTAGCTGGTGGGTGGGATCTGAGCTGTGGCTCATGTAGTAAGAGCCAGCTGTGTAAATaGCTGCCGAAAACGTCTGAC | + |
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Preference number: 5 (lower is better) Translates to: HQEMVAGGWDLSCGSCSKSQLCK*LPKTSD Trigger: GTCAGACGTTTTCGGCAGCAATTTACACAGCTGGCT...CTTACTACATGAGCCACAGCTCAGATCCCACCCACCAGCTACCATTTCCTGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR CAA 90 bp | TGTAGTAAGGCGTTCTGCAGTCCTGTCCTCCAGGGAGGGTCTCTACCTCTCTGCTCACTGTCGTACTGCTaGAAAACACACTGCCATTTC | + |
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Preference number: 5 (lower is better) Translates to: CSKAFCSPVLQGGSLPLCSLSYC*KTHCHF Trigger: GAAATGGCAGTGTGTTTTCAAGCAGTACGACAGTGA...GCAGAGAGGTAGAGACCCTCCCTGGAGGACAGGACTGCAGAACGCCTTACTACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR CAA 90 bp | AGAGCCCACCAGGAAATGGTAGCTGGTGGGTGGGATCTGAGCTGTGGCTCATGTAGGCAGCTGATAAAGTaGTTAAAATCCATCCCGCCA | + |
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Preference number: 5 (lower is better) Translates to: RAHQEMVAGGWDLSCGSCRQLIK*LKSIPP Trigger: TGGCGGGATGGATTTTAACAACTTTATCAGCTGCCT...ACATGAGCCACAGCTCAGATCCCACCCACCAGCTACCATTTCCTGGTGGGCTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS-3UTR CAA 90 bp | TATAAAAGAGCCCACCAGGAAATGGTAGCTGGTGGGTGGGATCTGAGCTGTGGCTGCTTAGAAAGGACTTaGTTGAGAATATTCATCAGG | + |
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Preference number: 5 (lower is better) Translates to: YKRAHQEMVAGGWDLSCGCLERT*LRIFIR Trigger: CCTGATGAATATTCTCAACAAAGTCCTTTCTAAGCA...GCCACAGCTCAGATCCCACCCACCAGCTACCATTTCCTGGTGGGCTCTTTTATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS CCA 72 bp | AGCTGGAAGCCCGCTGCCTGCATGGCCCCGTGCAGCTaGGAGCTTCCGAGGGAGCCAGAATGGTCACTGTCG | + |
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Preference number: 6 (lower is better) Translates to: SWKPAACMAPCS*ELPREPEWSLS Trigger: CGACAGTGACCATTCTGGCTCCCTCGGAAGCTCCCAGCTGCACGGGGCCATGCAGGCAGCGGGCTTCCAGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS GCA 72 bp | TCATTGAGCTGGAAGCCCGCTGCCTGCATGGCCCCGTaGAGCTGGGAGCTTCCGAGGGAGCCAGAATGGTCA | + |
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Preference number: 6 (lower is better) Translates to: SLSWKPAACMAP*SWELPREPEWS Trigger: TGACCATTCTGGCTCCCTCGGAAGCTCCCAGCTGCACGGGGCCATGCAGGCAGCGGGCTTCCAGCTCAATGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS CCA 72 bp | CACGACGGTAAAATGCTGCTGTTGGGGAGGCGGCTCTaGGGTGTACTGAGCTGCGGCAGCCTCGCTGATAAA | + |
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Preference number: 6 (lower is better) Translates to: HDGKMLLLGRRL*GVLSCGSLADK Trigger: TTTATCAGCGAGGCTGCCGCAGCTCAGTACACCCCAGAGCCGCCTCCCCAACAGCAGCATTTTACCGTCGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS CCA 72 bp | GCCCCGTGCAGCTGGGAGCTTCCGAGGGAGCCAGAATaGTCACTGTCGTACTGCTTGAAAACACACTGCCAT | + |
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Preference number: 6 (lower is better) Translates to: APCSWELPREPE*SLSYCLKTHCH Trigger: ATGGCAGTGTGTTTTCAAGCAGTACGACAGTGACCATTCTGGCTCCCTCGGAAGCTCCCAGCTGCACGGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS GCA 72 bp | CCCACCTCCATGTCGGGTCCAGCCAGCTGTGTAAATTaGTGCCGAAAACGTCTGACTTCCTCACTTTCTGAG | + |
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Preference number: 6 (lower is better) Translates to: PTSMSGPASCVN*CRKRLTSSLSE Trigger: CTCAGAAAGTGAGGAAGTCAGACGTTTTCGGCAGCAATTTACACAGCTGGCTGGACCCGACATGGAGGTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS GCA 72 bp | GAGCTTCCGAGGGAGCCAGAATGGTCACTGTCGTACTaGTTGAAAACACACTGCCATTTCTTGATGTTGTTC | + |
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Preference number: 6 (lower is better) Translates to: ELPREPEWSLSY*LKTHCHFLMLF Trigger: GAACAACATCAAGAAATGGCAGTGTGTTTTCAAGCAGTACGACAGTGACCATTCTGGCTCCCTCGGAAGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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| CDS CAA 72 bp | CTTCCGAGGGAGCCAGAATGGTCACTGTCGTACTGCTaGAAAACACACTGCCATTTCTTGATGTTGTTCCAC | + |
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Preference number: 6 (lower is better) Translates to: LPREPEWSLSYC*KTHCHFLMLFH Trigger: GTGGAACAACATCAAGAAATGGCAGTGTGTTTTCAAGCAGTACGACAGTGACCATTCTGGCTCCCTCGGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104947.5 |
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