Pregenerated sensors for CAP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028656Ensembl transcript IDs: ENSMUST00000069533.12, ENSMUST00000106255.8, ENSMUST00000106257.10
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CGGTGCCCCAGTCTGGGCCTGAAGCTCTGTAAGCTCAGCCTGTGGTaGAGCTGCGCTGATGCCGAGAAGCTGCACCTTCCGGTGAAGATC | + |
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Preference number: 1 (lower is better) Translates to: RCPSLGLKLCKLSLW*SCADAEKLHLPVKI Trigger: GATCTTCACCGGAAGGTGCAGCTTCTCGGCATCAGCGCAGCTGCACCACAGGCTGAGCTTACAGAGCTTCAGGCCCAGACTGGGGCACCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR CCA 90 bp | CTTCGGTGCCCCAGTCTGGGCCTGAAGCTCTGTAAGCTCAGCCTGTaGTGCAGCTGCGCTGATGCCGAGAAGCTGCACCTTCCGGTGAAG | + |
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Preference number: 1 (lower is better) Translates to: LRCPSLGLKLCKLSL*CSCADAEKLHLPVK Trigger: CTTCACCGGAAGGTGCAGCTTCTCGGCATCAGCGCAGCTGCACCACAGGCTGAGCTTACAGAGCTTCAGGCCCAGACTGGGGCACCGAAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR CCA 90 bp | GCCGCCGTGGAGGTCATAGTCCTAGTCAGGTTCCTGCGCAGAGGCCCTAAGCTGTGTAAGCTCAGCCTGTaGTGCAGCTGCGCTGATGCC | + |
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Preference number: 2 (lower is better) Translates to: AAVEVIVLVRFLRRGPKLCKLSL*CSCADA Trigger: GGCATCAGCGCAGCTGCACCACAGGCTGAGCTTACA...CAGCTTAGGGCCTCTGCGCAGGAACCTGACTAGGACTATGACCTCCACGGCGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR TCA 90 bp | GCCGCCGTGGAGGTCATAGTCCTAGTCAGGTTCCTGCGCAGAGGCCCTAAGCTGATGTATCCCATGGTGTaGAGGGAGAGGGCACAGGAC | + |
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Preference number: 2 (lower is better) Translates to: AAVEVIVLVRFLRRGPKLMYPMV*RERAQD Trigger: GTCCTGTGCCCTCTCCCTTCACACCATGGGATACAT...CAGCTTAGGGCCTCTGCGCAGGAACCTGACTAGGACTATGACCTCCACGGCGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR TCA 90 bp | TGCCCCAGTCTGGGCCTGAAGCTCTGTAAGCTCAGCCTGTGGTGCAGCTGCGCTATGTATCCCATGGTGTaGAGGGAGAGGGCACAGGAC | + |
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Preference number: 2 (lower is better) Translates to: CPSLGLKLCKLSLWCSCAMYPMV*RERAQD Trigger: GTCCTGTGCCCTCTCCCTTCACACCATGGGATACAT...AGCGCAGCTGCACCACAGGCTGAGCTTACAGAGCTTCAGGCCCAGACTGGGGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR TCA 90 bp | GCCGCCGTGGAGGTCATAGTCCTAGTCAGGTTCCTGCGCAGAGGCCCTAAGCTGAATGACCCCCAAAGCTaGAAGCTTCGGTGCCCCAGT | + |
|
Preference number: 2 (lower is better) Translates to: AAVEVIVLVRFLRRGPKLNDPQS*KLRCPS Trigger: ACTGGGGCACCGAAGCTTTCAGCTTTGGGGGTCATT...CAGCTTAGGGCCTCTGCGCAGGAACCTGACTAGGACTATGACCTCCACGGCGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR CCA 90 bp | GCCGCCGTGGAGGTCATAGTCCTAGTCAGGTTCCTGCGCAGAGGCCCTAAGCTGATGCCTGCTATGTTGTaGTTGATGCTGACCCAGGAT | + |
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Preference number: 2 (lower is better) Translates to: AAVEVIVLVRFLRRGPKLMPAML*LMLTQD Trigger: ATCCTGGGTCAGCATCAACCACAACATAGCAGGCAT...CAGCTTAGGGCCTCTGCGCAGGAACCTGACTAGGACTATGACCTCCACGGCGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR TCA 90 bp | CTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCATGTATCCCATGGTGTaGAGGGAGAGGGCACAGGAC | + |
|
Preference number: 2 (lower is better) Translates to: LPSSEKDTATVLQLQGNAMYPMV*RERAQD Trigger: GTCCTGTGCCCTCTCCCTTCACACCATGGGATACAT...GGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR TCA 90 bp | ACTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCAATGACCCCCAAAGCTaGAAGCTTCGGTGCCCCAGT | + |
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Preference number: 2 (lower is better) Translates to: TSFLRKGHCYCTAAARECNDPQS*KLRCPS Trigger: ACTGGGGCACCGAAGCTTTCAGCTTTGGGGGTCATT...GCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR GCA 90 bp | CTAGAGGGAGCACTGGGATTTTGCAATGCTGTGCAAGATTCTGATGTAAGTCGAAGCCTGTGGTGCAGCTaGGCTGATGCCGAGAAGCTG | + |
|
Preference number: 2 (lower is better) Translates to: LEGALGFCNAVQDSDVSRSLWCS*ADAEKL Trigger: CAGCTTCTCGGCATCAGCGCAGCTGCACCACAGGCT...TCGACTTACATCAGAATCTTGCACAGCATTGCAAAATCCCAGTGCTCCCTCTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR CCA 90 bp | GCCGCCGTGGAGGTCATAGTCCTAGTCAGGTTCCTGCGCAGAGGCCCTAAGCTGCTTGGAATGCTGTGGTaGTTTTCTTTAAAGTTGTTC | + |
|
Preference number: 2 (lower is better) Translates to: AAVEVIVLVRFLRRGPKLLGMLW*FSLKLF Trigger: GAACAACTTTAAAGAAAACCACCACAGCATTCCAAG...CAGCTTAGGGCCTCTGCGCAGGAACCTGACTAGGACTATGACCTCCACGGCGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR CAA 90 bp | AGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCTGCTATGTaGTGGTTGATGCTGACCCAGGATGGAATGCAGATGAAGGATGCT | + |
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Preference number: 2 (lower is better) Translates to: RTLLLYCSCKGMPAM*WLMLTQDGMQMKDA Trigger: AGCATCCTTCATCTGCATTCCATCCTGGGTCAGCATCAACCACAACATAGCAGGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR GCA 90 bp | ATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCAGCCTGTGGTGCAGCTaGGCTGATGCCGAGAAGCTG | + |
|
Preference number: 2 (lower is better) Translates to: MLWWFSLKLFPMGIKAVISLWCS*ADAEKL Trigger: CAGCTTCTCGGCATCAGCGCAGCTGCACCACAGGCT...GATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR CCA 90 bp | CTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCGGAAACAAGTCTGCTTaGAATGCTGGGTGGCAATCC | + |
|
Preference number: 2 (lower is better) Translates to: LPSSEKDTATVLQLQGNAGNKSA*NAGWQS Trigger: GGATTGCCACCCAGCATTCCAAGCAGACTTGTTTCC...GGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR CCA 90 bp | TCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCTGGTGCATTCTGATGTTTaGTTCCAGGGTGTTGTGAAC | + |
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Preference number: 2 (lower is better) Translates to: SFLRKGHCYCTAAARECLVHSDV*FQGVVN Trigger: GTTCACAACACCCTGGAACCAAACATCAGAATGCAC...CAGGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR TCA 90 bp | CTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCAGGATGGAATGCAGATaGAGGATGCTTTTAGGAAAC | + |
|
Preference number: 2 (lower is better) Translates to: LPSSEKDTATVLQLQGNARMECR*RMLLGN Trigger: GTTTCCTAAAAGCATCCTTCATCTGCATTCCATCCT...GGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR CCA 90 bp | CTAGAGGGAGCACTGGGATTTTGCAATGCTGTGCAAGATTCTGATGTAAGTCGAGATGCTGACCCAGGATaGAATGCAGATGAAGGATGC | + |
|
Preference number: 2 (lower is better) Translates to: LEGALGFCNAVQDSDVSRDADPG*NADEGC Trigger: GCATCCTTCATCTGCATTCCATCCTGGGTCAGCATC...TCGACTTACATCAGAATCTTGCACAGCATTGCAAAATCCCAGTGCTCCCTCTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR GCA 90 bp | CTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCGTTAGGAGAATAGTGTaGATTCTGATGTTTGGTTCC | + |
|
Preference number: 2 (lower is better) Translates to: LPSSEKDTATVLQLQGNAVRRIV*ILMFGS Trigger: GGAACCAAACATCAGAATGCACACTATTCTCCTAAC...GGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR CCA 90 bp | ATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCGGAAACAAGTCTGCTTaGAATGCTGGGTGGCAATCC | + |
|
Preference number: 2 (lower is better) Translates to: MLWWFSLKLFPMGIKAVIGNKSA*NAGWQS Trigger: GGATTGCCACCCAGCATTCCAAGCAGACTTGTTTCC...GATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR GCA 90 bp | ACTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCGTTAGGAGAATAGTGTaGATTCTGATGTTTGGTTCC | + |
|
Preference number: 2 (lower is better) Translates to: TSFLRKGHCYCTAAARECVRRIV*ILMFGS Trigger: GGAACCAAACATCAGAATGCACACTATTCTCCTAAC...GCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR TCA 90 bp | CTAGAGGGAGCACTGGGATTTTGCAATGCTGTGCAAGATTCTGATGTAAGTCGAAGGATGGAATGCAGATaGAGGATGCTTTTAGGAAAC | + |
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Preference number: 2 (lower is better) Translates to: LEGALGFCNAVQDSDVSRRMECR*RMLLGN Trigger: GTTTCCTAAAAGCATCCTTCATCTGCATTCCATCCT...TCGACTTACATCAGAATCTTGCACAGCATTGCAAAATCCCAGTGCTCCCTCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR CCA 90 bp | ATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCGTGCATTCTGATGTTTaGTTCCAGGGTGTTGTGAAC | + |
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Preference number: 2 (lower is better) Translates to: MLWWFSLKLFPMGIKAVIVHSDV*FQGVVN Trigger: GTTCACAACACCCTGGAACCAAACATCAGAATGCAC...GATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR GCA 90 bp | ATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCGTTAGGAGAATAGTGTaGATTCTGATGTTTGGTTCC | + |
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Preference number: 2 (lower is better) Translates to: MLWWFSLKLFPMGIKAVIVRRIV*ILMFGS Trigger: GGAACCAAACATCAGAATGCACACTATTCTCCTAAC...GATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR CCA 72 bp | CCCAGTCTGGGCCTGAAGCTCTGTAAGCTCAGCCTGTaGTGCAGCTGCGCTGATGCCGAGAAGCTGCACCTT | + |
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Preference number: 3 (lower is better) Translates to: PSLGLKLCKLSL*CSCADAEKLHL Trigger: AAGGTGCAGCTTCTCGGCATCAGCGCAGCTGCACCACAGGCTGAGCTTACAGAGCTTCAGGCCCAGACTGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR CAA 90 bp | GCCGCCGTGGAGGTCATAGTCCTAGTCAGGTTCCTGCGCAGAGGCCCTAAGCTGGAAGCCTGGCCTCACTaGTCAACAATGAAAACTAGG | + |
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Preference number: 3 (lower is better) Translates to: AAVEVIVLVRFLRRGPKLEAWPH*STMKTR Trigger: CCTAGTTTTCATTGTTGACAAGTGAGGCCAGGCTTC...CAGCTTAGGGCCTCTGCGCAGGAACCTGACTAGGACTATGACCTCCACGGCGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR GCA 72 bp | GACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCTaGTATGTTGTGGTTGATGCTGACCCAGGATGGAAT | + |
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Preference number: 3 (lower is better) Translates to: DTATVLQLQGNA*YVVVDADPGWN Trigger: ATTCCATCCTGGGTCAGCATCAACCACAACATAGCAGGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR CCA 72 bp | CTGTACTGCAGCTGCAAGGGAATGCCTGCTATGTTGTaGTTGATGCTGACCCAGGATGGAATGCAGATGAAG | + |
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Preference number: 3 (lower is better) Translates to: LYCSCKGMPAML*LMLTQDGMQMK Trigger: CTTCATCTGCATTCCATCCTGGGTCAGCATCAACCACAACATAGCAGGCATTCCCTTGCAGCTGCAGTACAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR CAA 90 bp | ATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCGGAATGCCTGCTATGTaGTGGTTGATGCTGACCCAG | + |
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Preference number: 3 (lower is better) Translates to: MLWWFSLKLFPMGIKAVIGMPAM*WLMLTQ Trigger: CTGGGTCAGCATCAACCACAACATAGCAGGCATTCC...GATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR CAA 90 bp | TGCTATGTTGTGGTTGATGCTGACCCAGGATGGAATGCAGATGAAGGATGCTTTGAAGCCTGGCCTCACTaGTCAACAATGAAAACTAGG | + |
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Preference number: 3 (lower is better) Translates to: CYVVVDADPGWNADEGCFEAWPH*STMKTR Trigger: CCTAGTTTTCATTGTTGACAAGTGAGGCCAGGCTTC...AAAGCATCCTTCATCTGCATTCCATCCTGGGTCAGCATCAACCACAACATAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR GCA 72 bp | AAAGGGTTTAAGACTTCCTTCCTCAGAAAAGGACACTaGTACTGTACTGCAGCTGCAAGGGAATGCCTGCTA | + |
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Preference number: 3 (lower is better) Translates to: KGFKTSFLRKGH*YCTAAARECLL Trigger: TAGCAGGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAGTCTTAAACCCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR CAA 90 bp | ATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCGAAGCCTGGCCTCACTaGTCAACAATGAAAACTAGG | + |
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Preference number: 3 (lower is better) Translates to: MLWWFSLKLFPMGIKAVIEAWPH*STMKTR Trigger: CCTAGTTTTCATTGTTGACAAGTGAGGCCAGGCTTC...GATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR GCA 72 bp | GGAATGCAGATGAAGGATGCTTTTAGGAAACAAGTCTaGTTGGAATGCTGGGTGGCAATCCTTAGCTTTTGG | + |
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Preference number: 3 (lower is better) Translates to: GMQMKDAFRKQV*LECWVAILSFW Trigger: CCAAAAGCTAAGGATTGCCACCCAGCATTCCAAGCAGACTTGTTTCCTAAAAGCATCCTTCATCTGCATTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR-3UTR CAA 90 bp | CTAGAGGGAGCACTGGGATTTTGCAATGCTGTGCAAGATTCTGATGTAAGTCGATGGTTTTCTTTAAAGTaGTTCCCCATGGGAATCAAG | + |
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Preference number: 3 (lower is better) Translates to: LEGALGFCNAVQDSDVSRWFSLK*FPMGIK Trigger: CTTGATTCCCATGGGGAACAACTTTAAAGAAAACCA...TCGACTTACATCAGAATCTTGCACAGCATTGCAAAATCCCAGTGCTCCCTCTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR CCA 90 bp | GCCGCCGTGGAGGTCATAGTCCTAGTCAGGTTCCTGCGCAGAGGCCCTAAGCTGAACTTCAGGCCTGTGTaGACCATCTCCGCGTGTTTC | + |
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Preference number: 4 (lower is better) Translates to: AAVEVIVLVRFLRRGPKLNFRPV*TISACF Trigger: GAAACACGCGGAGATGGTCCACACAGGCCTGAAGTT...CAGCTTAGGGCCTCTGCGCAGGAACCTGACTAGGACTATGACCTCCACGGCGGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR CCA 90 bp | TGCCCCAGTCTGGGCCTGAAGCTCTGTAAGCTCAGCCTGTGGTGCAGCTGCGCTAACTTCAGGCCTGTGTaGACCATCTCCGCGTGTTTC | + |
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Preference number: 4 (lower is better) Translates to: CPSLGLKLCKLSLWCSCANFRPV*TISACF Trigger: GAAACACGCGGAGATGGTCCACACAGGCCTGAAGTT...AGCGCAGCTGCACCACAGGCTGAGCTTACAGAGCTTCAGGCCCAGACTGGGGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR CCA 90 bp | TGCCCCAGTCTGGGCCTGAAGCTCTGTAAGCTCAGCCTGTGGTGCAGCTGCGCTGAACTGCTCGGGGACTaGGAACTCGTTAAAATCACC | + |
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Preference number: 4 (lower is better) Translates to: CPSLGLKLCKLSLWCSCAELLGD*ELVKIT Trigger: GGTGATTTTAACGAGTTCCCAGTCCCCGAGCAGTTC...AGCGCAGCTGCACCACAGGCTGAGCTTACAGAGCTTCAGGCCCAGACTGGGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR CCA 90 bp | TGCCCCAGTCTGGGCCTGAAGCTCTGTAAGCTCAGCCTGTGGTGCAGCTGCGCTAAGTTTATTACCAGCTaGCTGCTGGCACTGAGAAGC | + |
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Preference number: 4 (lower is better) Translates to: CPSLGLKLCKLSLWCSCAKFITS*LLALRS Trigger: GCTTCTCAGTGCCAGCAGCCAGCTGGTAATAAACTT...AGCGCAGCTGCACCACAGGCTGAGCTTACAGAGCTTCAGGCCCAGACTGGGGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR GCA 90 bp | GCCGCCGTGGAGGTCATAGTCCTAGTCAGGTTCCTGCGCAGAGGCCCTAAGCTGATAACTTCTTGGATCTaGTCCGAGATAGGTGCCAAC | + |
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Preference number: 4 (lower is better) Translates to: AAVEVIVLVRFLRRGPKLITSWI*SEIGAN Trigger: GTTGGCACCTATCTCGGAGCAGATCCAAGAAGTTAT...CAGCTTAGGGCCTCTGCGCAGGAACCTGACTAGGACTATGACCTCCACGGCGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR GCA 90 bp | TGCCCCAGTCTGGGCCTGAAGCTCTGTAAGCTCAGCCTGTGGTGCAGCTGCGCTTCTCCATATCCACAGTaGATGTCTGAAGTATGTGAC | + |
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Preference number: 4 (lower is better) Translates to: CPSLGLKLCKLSLWCSCASPYPQ*MSEVCD Trigger: GTCACATACTTCAGACATGCACTGTGGATATGGAGA...AGCGCAGCTGCACCACAGGCTGAGCTTACAGAGCTTCAGGCCCAGACTGGGGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR GCA 90 bp | TGCCCCAGTCTGGGCCTGAAGCTCTGTAAGCTCAGCCTGTGGTGCAGCTGCGCTCTGCTCCGAGATAGGTaGCAACAAATCAGAAAGTTT | + |
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Preference number: 4 (lower is better) Translates to: CPSLGLKLCKLSLWCSCALLRDR*QQIRKF Trigger: AAACTTTCTGATTTGTTGGCACCTATCTCGGAGCAG...AGCGCAGCTGCACCACAGGCTGAGCTTACAGAGCTTCAGGCCCAGACTGGGGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR GCA 90 bp | TCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCTGATCTCCGCGTGTTTCTaGACATCTCCCCCGATCTCC | + |
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Preference number: 4 (lower is better) Translates to: SFLRKGHCYCTAAARECLISACF*TSPPIS Trigger: GGAGATCGGGGGAGATGTGCAGAAACACGCGGAGAT...CAGGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR CCA 90 bp | GCCGCCGTGGAGGTCATAGTCCTAGTCAGGTTCCTGCGCAGAGGCCCTAAGCTGGATTTGTGTAAAACATaGCCGCGTCATTCATCTCTT | + |
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Preference number: 4 (lower is better) Translates to: AAVEVIVLVRFLRRGPKLDLCKT*PRHSSL Trigger: AAGAGATGAATGACGCGGCCATGTTTTACACAAATC...CAGCTTAGGGCCTCTGCGCAGGAACCTGACTAGGACTATGACCTCCACGGCGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR CCA 90 bp | ACTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCACCCAGCCCAAGGCCTaGATGCTTTCACTGACAGCA | + |
|
Preference number: 4 (lower is better) Translates to: TSFLRKGHCYCTAAARECTQPKA*MLSLTA Trigger: TGCTGTCAGTGAAAGCATCCAGGCCTTGGGCTGGGT...GCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR TCA 90 bp | TCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCTGTGGAACTGCTCCTTTTaGAGGGCTGTCTCCATATCC | + |
|
Preference number: 4 (lower is better) Translates to: SFLRKGHCYCTAAARECLWNCSF*RAVSIS Trigger: GGATATGGAGACAGCCCTTCAAAAGGAGCAGTTCCA...CAGGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR GCA 90 bp | CTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCCCACTCTCCATTTCTTaGCTTCCAGTTCCAGCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: LPSSEKDTATVLQLQGNAPLSIS*LPVPAE Trigger: CTCTGCTGGAACTGGAAGGCAAGAAATGGAGAGTGG...GGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR CCA 90 bp | CTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCGAACTGCTCGGGGACTaGGAACTCGTTAAAATCACC | + |
|
Preference number: 4 (lower is better) Translates to: LPSSEKDTATVLQLQGNAELLGD*ELVKIT Trigger: GGTGATTTTAACGAGTTCCCAGTCCCCGAGCAGTTC...GGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR CAA 72 bp | CTACTGTACTGCAGCTGCAAGGGAATGCCTGCTATGTaGTGGTTGATGCTGACCCAGGATGGAATGCAGATG | + |
|
Preference number: 4 (lower is better) Translates to: LLYCSCKGMPAM*WLMLTQDGMQM Trigger: CATCTGCATTCCATCCTGGGTCAGCATCAACCACAACATAGCAGGCATTCCCTTGCAGCTGCAGTACAGTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR GCA 90 bp | CTAGAGGGAGCACTGGGATTTTGCAATGCTGTGCAAGATTCTGATGTAAGTCGAATCTCCGCGTGTTTCTaGACATCTCCCCCGATCTCC | + |
|
Preference number: 4 (lower is better) Translates to: LEGALGFCNAVQDSDVSRISACF*TSPPIS Trigger: GGAGATCGGGGGAGATGTGCAGAAACACGCGGAGAT...TCGACTTACATCAGAATCTTGCACAGCATTGCAAAATCCCAGTGCTCCCTCTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR GCA 90 bp | ACTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCCACTCTCCATTTCTTaGCTTCCAGTTCCAGCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: TSFLRKGHCYCTAAARECPLSIS*LPVPAE Trigger: CTCTGCTGGAACTGGAAGGCAAGAAATGGAGAGTGG...GCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR CCA 90 bp | CTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCAAGTTTATTACCAGCTaGCTGCTGGCACTGAGAAGC | + |
|
Preference number: 4 (lower is better) Translates to: LPSSEKDTATVLQLQGNAKFITS*LLALRS Trigger: GCTTCTCAGTGCCAGCAGCCAGCTGGTAATAAACTT...GGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR CCA 90 bp | TGCTATGTTGTGGTTGATGCTGACCCAGGATGGAATGCAGATGAAGGATGCTTTACCCAGCCCAAGGCCTaGATGCTTTCACTGACAGCA | + |
|
Preference number: 4 (lower is better) Translates to: CYVVVDADPGWNADEGCFTQPKA*MLSLTA Trigger: TGCTGTCAGTGAAAGCATCCAGGCCTTGGGCTGGGT...AAAGCATCCTTCATCTGCATTCCATCCTGGGTCAGCATCAACCACAACATAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| 3UTR CAA 72 bp | TACTGCAGCTGCAAGGGAATGCCTGCTATGTTGTGGTaGATGCTGACCCAGGATGGAATGCAGATGAAGGAT | + |
|
Preference number: 4 (lower is better) Translates to: YCSCKGMPAMLW*MLTQDGMQMKD Trigger: ATCCTTCATCTGCATTCCATCCTGGGTCAGCATCAACCACAACATAGCAGGCATTCCCTTGCAGCTGCAGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
||
| CDS-3UTR TCA 90 bp | TCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCTGGTGATGCTTTCCCCCTaGTTAATCTGTGCAAACAGT | + |
|
Preference number: 4 (lower is better) Translates to: SFLRKGHCYCTAAARECLVMLSP*LICANS Trigger: ACTGTTTGCACAGATTAATCAGGGGGAAAGCATCAC...CAGGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR GCA 90 bp | ATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCATCTCCGCGTGTTTCTaGACATCTCCCCCGATCTCC | + |
|
Preference number: 4 (lower is better) Translates to: MLWWFSLKLFPMGIKAVIISACF*TSPPIS Trigger: GGAGATCGGGGGAGATGTGCAGAAACACGCGGAGAT...GATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR CCA 90 bp | ATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCACCCAGCCCAAGGCCTaGATGCTTTCACTGACAGCA | + |
|
Preference number: 4 (lower is better) Translates to: MLWWFSLKLFPMGIKAVITQPKA*MLSLTA Trigger: TGCTGTCAGTGAAAGCATCCAGGCCTTGGGCTGGGT...GATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR TCA 90 bp | CTAGAGGGAGCACTGGGATTTTGCAATGCTGTGCAAGATTCTGATGTAAGTCGATGGAACTGCTCCTTTTaGAGGGCTGTCTCCATATCC | + |
|
Preference number: 4 (lower is better) Translates to: LEGALGFCNAVQDSDVSRWNCSF*RAVSIS Trigger: GGATATGGAGACAGCCCTTCAAAAGGAGCAGTTCCA...TCGACTTACATCAGAATCTTGCACAGCATTGCAAAATCCCAGTGCTCCCTCTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR TCA 90 bp | ATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCTGGAACTGCTCCTTTTaGAGGGCTGTCTCCATATCC | + |
|
Preference number: 4 (lower is better) Translates to: MLWWFSLKLFPMGIKAVIWNCSF*RAVSIS Trigger: GGATATGGAGACAGCCCTTCAAAAGGAGCAGTTCCA...GATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR CCA 90 bp | AATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATAACTTCAGGCCTGTGTaGACCATCTCCGCGTGTTTC | + |
|
Preference number: 4 (lower is better) Translates to: NAVVVFFKVVPHGNQGSHNFRPV*TISACF Trigger: GAAACACGCGGAGATGGTCCACACAGGCCTGAAGTT...ATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR CCA 90 bp | TCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCTGAAGGTTATAACTTCTTaGATCTGCTCCGAGATAGGT | + |
|
Preference number: 4 (lower is better) Translates to: SFLRKGHCYCTAAARECLKVITS*ICSEIG Trigger: ACCTATCTCGGAGCAGATCCAAGAAGTTATAACCTT...CAGGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR GCA 90 bp | CTAGAGGGAGCACTGGGATTTTGCAATGCTGTGCAAGATTCTGATGTAAGTCGAATAACTTCTTGGATCTaGTCCGAGATAGGTGCCAAC | + |
|
Preference number: 4 (lower is better) Translates to: LEGALGFCNAVQDSDVSRITSWI*SEIGAN Trigger: GTTGGCACCTATCTCGGAGCAGATCCAAGAAGTTAT...TCGACTTACATCAGAATCTTGCACAGCATTGCAAAATCCCAGTGCTCCCTCTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR GCA 90 bp | TGCTATGTTGTGGTTGATGCTGACCCAGGATGGAATGCAGATGAAGGATGCTTTATAACTTCTTGGATCTaGTCCGAGATAGGTGCCAAC | + |
|
Preference number: 4 (lower is better) Translates to: CYVVVDADPGWNADEGCFITSWI*SEIGAN Trigger: GTTGGCACCTATCTCGGAGCAGATCCAAGAAGTTAT...AAAGCATCCTTCATCTGCATTCCATCCTGGGTCAGCATCAACCACAACATAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR CCA 90 bp | ACTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCGATTTGTGTAAAACATaGCCGCGTCATTCATCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: TSFLRKGHCYCTAAARECDLCKT*PRHSSL Trigger: AAGAGATGAATGACGCGGCCATGTTTTACACAAATC...GCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR TCA 90 bp | ACTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCTTTGCAATGTTGTGTTaGCACACTTGTAGATGTAAG | + |
|
Preference number: 4 (lower is better) Translates to: TSFLRKGHCYCTAAARECFAMLC*HTCRCK Trigger: CTTACATCTACAAGTGTGTCAACACAACATTGCAAA...GCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR GCA 90 bp | CTAGAGGGAGCACTGGGATTTTGCAATGCTGTGCAAGATTCTGATGTAAGTCGACTGCTCCGAGATAGGTaGCAACAAATCAGAAAGTTT | + |
|
Preference number: 4 (lower is better) Translates to: LEGALGFCNAVQDSDVSRLLRDR*QQIRKF Trigger: AAACTTTCTGATTTGTTGGCACCTATCTCGGAGCAG...TCGACTTACATCAGAATCTTGCACAGCATTGCAAAATCCCAGTGCTCCCTCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR TCA 90 bp | AATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATGTGATGCTTTCCCCCTaGTTAATCTGTGCAAACAGT | + |
|
Preference number: 4 (lower is better) Translates to: NAVVVFFKVVPHGNQGSHVMLSP*LICANS Trigger: ACTGTTTGCACAGATTAATCAGGGGGAAAGCATCAC...ATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR GCA 90 bp | ATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCTCTCCATATCCACAGTaGATGTCTGAAGTATGTGAC | + |
|
Preference number: 4 (lower is better) Translates to: MLWWFSLKLFPMGIKAVISPYPQ*MSEVCD Trigger: GTCACATACTTCAGACATGCACTGTGGATATGGAGA...GATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR CCA 90 bp | TGCTATGTTGTGGTTGATGCTGACCCAGGATGGAATGCAGATGAAGGATGCTTTAAGGTTATAACTTCTTaGATCTGCTCCGAGATAGGT | + |
|
Preference number: 4 (lower is better) Translates to: CYVVVDADPGWNADEGCFKVITS*ICSEIG Trigger: ACCTATCTCGGAGCAGATCCAAGAAGTTATAACCTT...AAAGCATCCTTCATCTGCATTCCATCCTGGGTCAGCATCAACCACAACATAGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR CCA 90 bp | TGCTATGTTGTGGTTGATGCTGACCCAGGATGGAATGCAGATGAAGGATGCTTTGATTTGTGTAAAACATaGCCGCGTCATTCATCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: CYVVVDADPGWNADEGCFDLCKT*PRHSSL Trigger: AAGAGATGAATGACGCGGCCATGTTTTACACAAATC...AAAGCATCCTTCATCTGCATTCCATCCTGGGTCAGCATCAACCACAACATAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR TCA 90 bp | CTAGAGGGAGCACTGGGATTTTGCAATGCTGTGCAAGATTCTGATGTAAGTCGATTTGCAATGTTGTGTTaGCACACTTGTAGATGTAAG | + |
|
Preference number: 4 (lower is better) Translates to: LEGALGFCNAVQDSDVSRFAMLC*HTCRCK Trigger: CTTACATCTACAAGTGTGTCAACACAACATTGCAAA...TCGACTTACATCAGAATCTTGCACAGCATTGCAAAATCCCAGTGCTCCCTCTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
||
| CDS-3UTR GCA 90 bp | AATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCTGCTCCGAGATAGGTaGCAACAAATCAGAAAGTTT | + |
|
Preference number: 4 (lower is better) Translates to: NAVVVFFKVVPHGNQGSHLLRDR*QQIRKF Trigger: AAACTTTCTGATTTGTTGGCACCTATCTCGGAGCAG...ATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR TCA 90 bp | AATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATTTTGCAATGTTGTGTTaGCACACTTGTAGATGTAAG | + |
|
Preference number: 4 (lower is better) Translates to: NAVVVFFKVVPHGNQGSHFAMLC*HTCRCK Trigger: CTTACATCTACAAGTGTGTCAACACAACATTGCAAA...ATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR CAA 90 bp | CTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCGCCACAGGCCCCGTCTaGCTCCAGGCCAGGCCAGTA | + |
|
Preference number: 5 (lower is better) Translates to: LPSSEKDTATVLQLQGNAATGPV*LQARPV Trigger: TACTGGCCTGGCCTGGAGCAAGACGGGGCCTGTGGC...GGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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| CDS-3UTR CAA 90 bp | TCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCTGGCCACAGGCCCCGTCTaGCTCCAGGCCAGGCCAGTA | + |
|
Preference number: 5 (lower is better) Translates to: SFLRKGHCYCTAAARECLATGPV*LQARPV Trigger: TACTGGCCTGGCCTGGAGCAAGACGGGGCCTGTGGC...CAGGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
||
| CDS-3UTR CAA 90 bp | GCCGCCGTGGAGGTCATAGTCCTAGTCAGGTTCCTGCGCAGAGGCCCTAAGCTGATGGAACTGCTCCTTTaGAAGGGCTGTCTCCATATC | + |
|
Preference number: 5 (lower is better) Translates to: AAVEVIVLVRFLRRGPKLMELLL*KGCLHI Trigger: GATATGGAGACAGCCCTTCAAAAGGAGCAGTTCCAT...CAGCTTAGGGCCTCTGCGCAGGAACCTGACTAGGACTATGACCTCCACGGCGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
||
| CDS-3UTR CAA 90 bp | TCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCTGATGGAACTGCTCCTTTaGAAGGGCTGTCTCCATATC | + |
|
Preference number: 5 (lower is better) Translates to: SFLRKGHCYCTAAARECLMELLL*KGCLHI Trigger: GATATGGAGACAGCCCTTCAAAAGGAGCAGTTCCAT...CAGGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
||
| CDS-3UTR CAA 90 bp | CTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCATGGAACTGCTCCTTTaGAAGGGCTGTCTCCATATC | + |
|
Preference number: 5 (lower is better) Translates to: LPSSEKDTATVLQLQGNAMELLL*KGCLHI Trigger: GATATGGAGACAGCCCTTCAAAAGGAGCAGTTCCAT...GGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000069533.12 ENSMUST00000106255.8 ENSMUST00000106257.10 |
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