RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CAP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028656

Ensembl transcript IDs: ENSMUST00000069533.12, ENSMUST00000106255.8, ENSMUST00000106257.10

Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CGGTGCCCCAGTCTGGGCCTGAAGCTCTGTAAGCTCAGCCTGTGGTaGAGCTGCGCTGATGCCGAGAAGCTGCACCTTCCGGTGAAGATC +
Preference number: 1 (lower is better)
Translates to: RCPSLGLKLCKLSLW*SCADAEKLHLPVKI
Trigger: GATCTTCACCGGAAGGTGCAGCTTCTCGGCATCAGCGCAGCTGCACCACAGGCTGAGCTTACAGAGCTTCAGGCCCAGACTGGGGCACCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR CCA 90 bp CTTCGGTGCCCCAGTCTGGGCCTGAAGCTCTGTAAGCTCAGCCTGTaGTGCAGCTGCGCTGATGCCGAGAAGCTGCACCTTCCGGTGAAG +
Preference number: 1 (lower is better)
Translates to: LRCPSLGLKLCKLSL*CSCADAEKLHLPVK
Trigger: CTTCACCGGAAGGTGCAGCTTCTCGGCATCAGCGCAGCTGCACCACAGGCTGAGCTTACAGAGCTTCAGGCCCAGACTGGGGCACCGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR CCA 90 bp GCCGCCGTGGAGGTCATAGTCCTAGTCAGGTTCCTGCGCAGAGGCCCTAAGCTGTGTAAGCTCAGCCTGTaGTGCAGCTGCGCTGATGCC +
Preference number: 2 (lower is better)
Translates to: AAVEVIVLVRFLRRGPKLCKLSL*CSCADA
Trigger: GGCATCAGCGCAGCTGCACCACAGGCTGAGCTTACA...CAGCTTAGGGCCTCTGCGCAGGAACCTGACTAGGACTATGACCTCCACGGCGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR TCA 90 bp GCCGCCGTGGAGGTCATAGTCCTAGTCAGGTTCCTGCGCAGAGGCCCTAAGCTGATGTATCCCATGGTGTaGAGGGAGAGGGCACAGGAC +
Preference number: 2 (lower is better)
Translates to: AAVEVIVLVRFLRRGPKLMYPMV*RERAQD
Trigger: GTCCTGTGCCCTCTCCCTTCACACCATGGGATACAT...CAGCTTAGGGCCTCTGCGCAGGAACCTGACTAGGACTATGACCTCCACGGCGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR TCA 90 bp TGCCCCAGTCTGGGCCTGAAGCTCTGTAAGCTCAGCCTGTGGTGCAGCTGCGCTATGTATCCCATGGTGTaGAGGGAGAGGGCACAGGAC +
Preference number: 2 (lower is better)
Translates to: CPSLGLKLCKLSLWCSCAMYPMV*RERAQD
Trigger: GTCCTGTGCCCTCTCCCTTCACACCATGGGATACAT...AGCGCAGCTGCACCACAGGCTGAGCTTACAGAGCTTCAGGCCCAGACTGGGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR TCA 90 bp GCCGCCGTGGAGGTCATAGTCCTAGTCAGGTTCCTGCGCAGAGGCCCTAAGCTGAATGACCCCCAAAGCTaGAAGCTTCGGTGCCCCAGT +
Preference number: 2 (lower is better)
Translates to: AAVEVIVLVRFLRRGPKLNDPQS*KLRCPS
Trigger: ACTGGGGCACCGAAGCTTTCAGCTTTGGGGGTCATT...CAGCTTAGGGCCTCTGCGCAGGAACCTGACTAGGACTATGACCTCCACGGCGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR CCA 90 bp GCCGCCGTGGAGGTCATAGTCCTAGTCAGGTTCCTGCGCAGAGGCCCTAAGCTGATGCCTGCTATGTTGTaGTTGATGCTGACCCAGGAT +
Preference number: 2 (lower is better)
Translates to: AAVEVIVLVRFLRRGPKLMPAML*LMLTQD
Trigger: ATCCTGGGTCAGCATCAACCACAACATAGCAGGCAT...CAGCTTAGGGCCTCTGCGCAGGAACCTGACTAGGACTATGACCTCCACGGCGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR TCA 90 bp CTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCATGTATCCCATGGTGTaGAGGGAGAGGGCACAGGAC +
Preference number: 2 (lower is better)
Translates to: LPSSEKDTATVLQLQGNAMYPMV*RERAQD
Trigger: GTCCTGTGCCCTCTCCCTTCACACCATGGGATACAT...GGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR TCA 90 bp ACTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCAATGACCCCCAAAGCTaGAAGCTTCGGTGCCCCAGT +
Preference number: 2 (lower is better)
Translates to: TSFLRKGHCYCTAAARECNDPQS*KLRCPS
Trigger: ACTGGGGCACCGAAGCTTTCAGCTTTGGGGGTCATT...GCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR GCA 90 bp CTAGAGGGAGCACTGGGATTTTGCAATGCTGTGCAAGATTCTGATGTAAGTCGAAGCCTGTGGTGCAGCTaGGCTGATGCCGAGAAGCTG +
Preference number: 2 (lower is better)
Translates to: LEGALGFCNAVQDSDVSRSLWCS*ADAEKL
Trigger: CAGCTTCTCGGCATCAGCGCAGCTGCACCACAGGCT...TCGACTTACATCAGAATCTTGCACAGCATTGCAAAATCCCAGTGCTCCCTCTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR CCA 90 bp GCCGCCGTGGAGGTCATAGTCCTAGTCAGGTTCCTGCGCAGAGGCCCTAAGCTGCTTGGAATGCTGTGGTaGTTTTCTTTAAAGTTGTTC +
Preference number: 2 (lower is better)
Translates to: AAVEVIVLVRFLRRGPKLLGMLW*FSLKLF
Trigger: GAACAACTTTAAAGAAAACCACCACAGCATTCCAAG...CAGCTTAGGGCCTCTGCGCAGGAACCTGACTAGGACTATGACCTCCACGGCGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR CAA 90 bp AGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCTGCTATGTaGTGGTTGATGCTGACCCAGGATGGAATGCAGATGAAGGATGCT +
Preference number: 2 (lower is better)
Translates to: RTLLLYCSCKGMPAM*WLMLTQDGMQMKDA
Trigger: AGCATCCTTCATCTGCATTCCATCCTGGGTCAGCATCAACCACAACATAGCAGGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR GCA 90 bp ATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCAGCCTGTGGTGCAGCTaGGCTGATGCCGAGAAGCTG +
Preference number: 2 (lower is better)
Translates to: MLWWFSLKLFPMGIKAVISLWCS*ADAEKL
Trigger: CAGCTTCTCGGCATCAGCGCAGCTGCACCACAGGCT...GATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR CCA 90 bp CTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCGGAAACAAGTCTGCTTaGAATGCTGGGTGGCAATCC +
Preference number: 2 (lower is better)
Translates to: LPSSEKDTATVLQLQGNAGNKSA*NAGWQS
Trigger: GGATTGCCACCCAGCATTCCAAGCAGACTTGTTTCC...GGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR CCA 90 bp TCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCTGGTGCATTCTGATGTTTaGTTCCAGGGTGTTGTGAAC +
Preference number: 2 (lower is better)
Translates to: SFLRKGHCYCTAAARECLVHSDV*FQGVVN
Trigger: GTTCACAACACCCTGGAACCAAACATCAGAATGCAC...CAGGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR TCA 90 bp CTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCAGGATGGAATGCAGATaGAGGATGCTTTTAGGAAAC +
Preference number: 2 (lower is better)
Translates to: LPSSEKDTATVLQLQGNARMECR*RMLLGN
Trigger: GTTTCCTAAAAGCATCCTTCATCTGCATTCCATCCT...GGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR CCA 90 bp CTAGAGGGAGCACTGGGATTTTGCAATGCTGTGCAAGATTCTGATGTAAGTCGAGATGCTGACCCAGGATaGAATGCAGATGAAGGATGC +
Preference number: 2 (lower is better)
Translates to: LEGALGFCNAVQDSDVSRDADPG*NADEGC
Trigger: GCATCCTTCATCTGCATTCCATCCTGGGTCAGCATC...TCGACTTACATCAGAATCTTGCACAGCATTGCAAAATCCCAGTGCTCCCTCTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR GCA 90 bp CTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCGTTAGGAGAATAGTGTaGATTCTGATGTTTGGTTCC +
Preference number: 2 (lower is better)
Translates to: LPSSEKDTATVLQLQGNAVRRIV*ILMFGS
Trigger: GGAACCAAACATCAGAATGCACACTATTCTCCTAAC...GGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR CCA 90 bp ATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCGGAAACAAGTCTGCTTaGAATGCTGGGTGGCAATCC +
Preference number: 2 (lower is better)
Translates to: MLWWFSLKLFPMGIKAVIGNKSA*NAGWQS
Trigger: GGATTGCCACCCAGCATTCCAAGCAGACTTGTTTCC...GATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR GCA 90 bp ACTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCGTTAGGAGAATAGTGTaGATTCTGATGTTTGGTTCC +
Preference number: 2 (lower is better)
Translates to: TSFLRKGHCYCTAAARECVRRIV*ILMFGS
Trigger: GGAACCAAACATCAGAATGCACACTATTCTCCTAAC...GCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR TCA 90 bp CTAGAGGGAGCACTGGGATTTTGCAATGCTGTGCAAGATTCTGATGTAAGTCGAAGGATGGAATGCAGATaGAGGATGCTTTTAGGAAAC +
Preference number: 2 (lower is better)
Translates to: LEGALGFCNAVQDSDVSRRMECR*RMLLGN
Trigger: GTTTCCTAAAAGCATCCTTCATCTGCATTCCATCCT...TCGACTTACATCAGAATCTTGCACAGCATTGCAAAATCCCAGTGCTCCCTCTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR CCA 90 bp ATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCGTGCATTCTGATGTTTaGTTCCAGGGTGTTGTGAAC +
Preference number: 2 (lower is better)
Translates to: MLWWFSLKLFPMGIKAVIVHSDV*FQGVVN
Trigger: GTTCACAACACCCTGGAACCAAACATCAGAATGCAC...GATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR GCA 90 bp ATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCGTTAGGAGAATAGTGTaGATTCTGATGTTTGGTTCC +
Preference number: 2 (lower is better)
Translates to: MLWWFSLKLFPMGIKAVIVRRIV*ILMFGS
Trigger: GGAACCAAACATCAGAATGCACACTATTCTCCTAAC...GATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR CCA 72 bp CCCAGTCTGGGCCTGAAGCTCTGTAAGCTCAGCCTGTaGTGCAGCTGCGCTGATGCCGAGAAGCTGCACCTT +
Preference number: 3 (lower is better)
Translates to: PSLGLKLCKLSL*CSCADAEKLHL
Trigger: AAGGTGCAGCTTCTCGGCATCAGCGCAGCTGCACCACAGGCTGAGCTTACAGAGCTTCAGGCCCAGACTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR CAA 90 bp GCCGCCGTGGAGGTCATAGTCCTAGTCAGGTTCCTGCGCAGAGGCCCTAAGCTGGAAGCCTGGCCTCACTaGTCAACAATGAAAACTAGG +
Preference number: 3 (lower is better)
Translates to: AAVEVIVLVRFLRRGPKLEAWPH*STMKTR
Trigger: CCTAGTTTTCATTGTTGACAAGTGAGGCCAGGCTTC...CAGCTTAGGGCCTCTGCGCAGGAACCTGACTAGGACTATGACCTCCACGGCGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR GCA 72 bp GACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCTaGTATGTTGTGGTTGATGCTGACCCAGGATGGAAT +
Preference number: 3 (lower is better)
Translates to: DTATVLQLQGNA*YVVVDADPGWN
Trigger: ATTCCATCCTGGGTCAGCATCAACCACAACATAGCAGGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR CCA 72 bp CTGTACTGCAGCTGCAAGGGAATGCCTGCTATGTTGTaGTTGATGCTGACCCAGGATGGAATGCAGATGAAG +
Preference number: 3 (lower is better)
Translates to: LYCSCKGMPAML*LMLTQDGMQMK
Trigger: CTTCATCTGCATTCCATCCTGGGTCAGCATCAACCACAACATAGCAGGCATTCCCTTGCAGCTGCAGTACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR CAA 90 bp ATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCGGAATGCCTGCTATGTaGTGGTTGATGCTGACCCAG +
Preference number: 3 (lower is better)
Translates to: MLWWFSLKLFPMGIKAVIGMPAM*WLMLTQ
Trigger: CTGGGTCAGCATCAACCACAACATAGCAGGCATTCC...GATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR CAA 90 bp TGCTATGTTGTGGTTGATGCTGACCCAGGATGGAATGCAGATGAAGGATGCTTTGAAGCCTGGCCTCACTaGTCAACAATGAAAACTAGG +
Preference number: 3 (lower is better)
Translates to: CYVVVDADPGWNADEGCFEAWPH*STMKTR
Trigger: CCTAGTTTTCATTGTTGACAAGTGAGGCCAGGCTTC...AAAGCATCCTTCATCTGCATTCCATCCTGGGTCAGCATCAACCACAACATAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR GCA 72 bp AAAGGGTTTAAGACTTCCTTCCTCAGAAAAGGACACTaGTACTGTACTGCAGCTGCAAGGGAATGCCTGCTA +
Preference number: 3 (lower is better)
Translates to: KGFKTSFLRKGH*YCTAAARECLL
Trigger: TAGCAGGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAGTCTTAAACCCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR CAA 90 bp ATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCGAAGCCTGGCCTCACTaGTCAACAATGAAAACTAGG +
Preference number: 3 (lower is better)
Translates to: MLWWFSLKLFPMGIKAVIEAWPH*STMKTR
Trigger: CCTAGTTTTCATTGTTGACAAGTGAGGCCAGGCTTC...GATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR GCA 72 bp GGAATGCAGATGAAGGATGCTTTTAGGAAACAAGTCTaGTTGGAATGCTGGGTGGCAATCCTTAGCTTTTGG +
Preference number: 3 (lower is better)
Translates to: GMQMKDAFRKQV*LECWVAILSFW
Trigger: CCAAAAGCTAAGGATTGCCACCCAGCATTCCAAGCAGACTTGTTTCCTAAAAGCATCCTTCATCTGCATTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR-3UTR CAA 90 bp CTAGAGGGAGCACTGGGATTTTGCAATGCTGTGCAAGATTCTGATGTAAGTCGATGGTTTTCTTTAAAGTaGTTCCCCATGGGAATCAAG +
Preference number: 3 (lower is better)
Translates to: LEGALGFCNAVQDSDVSRWFSLK*FPMGIK
Trigger: CTTGATTCCCATGGGGAACAACTTTAAAGAAAACCA...TCGACTTACATCAGAATCTTGCACAGCATTGCAAAATCCCAGTGCTCCCTCTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR CCA 90 bp GCCGCCGTGGAGGTCATAGTCCTAGTCAGGTTCCTGCGCAGAGGCCCTAAGCTGAACTTCAGGCCTGTGTaGACCATCTCCGCGTGTTTC +
Preference number: 4 (lower is better)
Translates to: AAVEVIVLVRFLRRGPKLNFRPV*TISACF
Trigger: GAAACACGCGGAGATGGTCCACACAGGCCTGAAGTT...CAGCTTAGGGCCTCTGCGCAGGAACCTGACTAGGACTATGACCTCCACGGCGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR CCA 90 bp TGCCCCAGTCTGGGCCTGAAGCTCTGTAAGCTCAGCCTGTGGTGCAGCTGCGCTAACTTCAGGCCTGTGTaGACCATCTCCGCGTGTTTC +
Preference number: 4 (lower is better)
Translates to: CPSLGLKLCKLSLWCSCANFRPV*TISACF
Trigger: GAAACACGCGGAGATGGTCCACACAGGCCTGAAGTT...AGCGCAGCTGCACCACAGGCTGAGCTTACAGAGCTTCAGGCCCAGACTGGGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR CCA 90 bp TGCCCCAGTCTGGGCCTGAAGCTCTGTAAGCTCAGCCTGTGGTGCAGCTGCGCTGAACTGCTCGGGGACTaGGAACTCGTTAAAATCACC +
Preference number: 4 (lower is better)
Translates to: CPSLGLKLCKLSLWCSCAELLGD*ELVKIT
Trigger: GGTGATTTTAACGAGTTCCCAGTCCCCGAGCAGTTC...AGCGCAGCTGCACCACAGGCTGAGCTTACAGAGCTTCAGGCCCAGACTGGGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR CCA 90 bp TGCCCCAGTCTGGGCCTGAAGCTCTGTAAGCTCAGCCTGTGGTGCAGCTGCGCTAAGTTTATTACCAGCTaGCTGCTGGCACTGAGAAGC +
Preference number: 4 (lower is better)
Translates to: CPSLGLKLCKLSLWCSCAKFITS*LLALRS
Trigger: GCTTCTCAGTGCCAGCAGCCAGCTGGTAATAAACTT...AGCGCAGCTGCACCACAGGCTGAGCTTACAGAGCTTCAGGCCCAGACTGGGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR GCA 90 bp GCCGCCGTGGAGGTCATAGTCCTAGTCAGGTTCCTGCGCAGAGGCCCTAAGCTGATAACTTCTTGGATCTaGTCCGAGATAGGTGCCAAC +
Preference number: 4 (lower is better)
Translates to: AAVEVIVLVRFLRRGPKLITSWI*SEIGAN
Trigger: GTTGGCACCTATCTCGGAGCAGATCCAAGAAGTTAT...CAGCTTAGGGCCTCTGCGCAGGAACCTGACTAGGACTATGACCTCCACGGCGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR GCA 90 bp TGCCCCAGTCTGGGCCTGAAGCTCTGTAAGCTCAGCCTGTGGTGCAGCTGCGCTTCTCCATATCCACAGTaGATGTCTGAAGTATGTGAC +
Preference number: 4 (lower is better)
Translates to: CPSLGLKLCKLSLWCSCASPYPQ*MSEVCD
Trigger: GTCACATACTTCAGACATGCACTGTGGATATGGAGA...AGCGCAGCTGCACCACAGGCTGAGCTTACAGAGCTTCAGGCCCAGACTGGGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR GCA 90 bp TGCCCCAGTCTGGGCCTGAAGCTCTGTAAGCTCAGCCTGTGGTGCAGCTGCGCTCTGCTCCGAGATAGGTaGCAACAAATCAGAAAGTTT +
Preference number: 4 (lower is better)
Translates to: CPSLGLKLCKLSLWCSCALLRDR*QQIRKF
Trigger: AAACTTTCTGATTTGTTGGCACCTATCTCGGAGCAG...AGCGCAGCTGCACCACAGGCTGAGCTTACAGAGCTTCAGGCCCAGACTGGGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR GCA 90 bp TCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCTGATCTCCGCGTGTTTCTaGACATCTCCCCCGATCTCC +
Preference number: 4 (lower is better)
Translates to: SFLRKGHCYCTAAARECLISACF*TSPPIS
Trigger: GGAGATCGGGGGAGATGTGCAGAAACACGCGGAGAT...CAGGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR CCA 90 bp GCCGCCGTGGAGGTCATAGTCCTAGTCAGGTTCCTGCGCAGAGGCCCTAAGCTGGATTTGTGTAAAACATaGCCGCGTCATTCATCTCTT +
Preference number: 4 (lower is better)
Translates to: AAVEVIVLVRFLRRGPKLDLCKT*PRHSSL
Trigger: AAGAGATGAATGACGCGGCCATGTTTTACACAAATC...CAGCTTAGGGCCTCTGCGCAGGAACCTGACTAGGACTATGACCTCCACGGCGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR CCA 90 bp ACTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCACCCAGCCCAAGGCCTaGATGCTTTCACTGACAGCA +
Preference number: 4 (lower is better)
Translates to: TSFLRKGHCYCTAAARECTQPKA*MLSLTA
Trigger: TGCTGTCAGTGAAAGCATCCAGGCCTTGGGCTGGGT...GCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR TCA 90 bp TCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCTGTGGAACTGCTCCTTTTaGAGGGCTGTCTCCATATCC +
Preference number: 4 (lower is better)
Translates to: SFLRKGHCYCTAAARECLWNCSF*RAVSIS
Trigger: GGATATGGAGACAGCCCTTCAAAAGGAGCAGTTCCA...CAGGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR GCA 90 bp CTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCCCACTCTCCATTTCTTaGCTTCCAGTTCCAGCAGAG +
Preference number: 4 (lower is better)
Translates to: LPSSEKDTATVLQLQGNAPLSIS*LPVPAE
Trigger: CTCTGCTGGAACTGGAAGGCAAGAAATGGAGAGTGG...GGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR CCA 90 bp CTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCGAACTGCTCGGGGACTaGGAACTCGTTAAAATCACC +
Preference number: 4 (lower is better)
Translates to: LPSSEKDTATVLQLQGNAELLGD*ELVKIT
Trigger: GGTGATTTTAACGAGTTCCCAGTCCCCGAGCAGTTC...GGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR CAA 72 bp CTACTGTACTGCAGCTGCAAGGGAATGCCTGCTATGTaGTGGTTGATGCTGACCCAGGATGGAATGCAGATG +
Preference number: 4 (lower is better)
Translates to: LLYCSCKGMPAM*WLMLTQDGMQM
Trigger: CATCTGCATTCCATCCTGGGTCAGCATCAACCACAACATAGCAGGCATTCCCTTGCAGCTGCAGTACAGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR GCA 90 bp CTAGAGGGAGCACTGGGATTTTGCAATGCTGTGCAAGATTCTGATGTAAGTCGAATCTCCGCGTGTTTCTaGACATCTCCCCCGATCTCC +
Preference number: 4 (lower is better)
Translates to: LEGALGFCNAVQDSDVSRISACF*TSPPIS
Trigger: GGAGATCGGGGGAGATGTGCAGAAACACGCGGAGAT...TCGACTTACATCAGAATCTTGCACAGCATTGCAAAATCCCAGTGCTCCCTCTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR GCA 90 bp ACTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCCACTCTCCATTTCTTaGCTTCCAGTTCCAGCAGAG +
Preference number: 4 (lower is better)
Translates to: TSFLRKGHCYCTAAARECPLSIS*LPVPAE
Trigger: CTCTGCTGGAACTGGAAGGCAAGAAATGGAGAGTGG...GCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR CCA 90 bp CTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCAAGTTTATTACCAGCTaGCTGCTGGCACTGAGAAGC +
Preference number: 4 (lower is better)
Translates to: LPSSEKDTATVLQLQGNAKFITS*LLALRS
Trigger: GCTTCTCAGTGCCAGCAGCCAGCTGGTAATAAACTT...GGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR CCA 90 bp TGCTATGTTGTGGTTGATGCTGACCCAGGATGGAATGCAGATGAAGGATGCTTTACCCAGCCCAAGGCCTaGATGCTTTCACTGACAGCA +
Preference number: 4 (lower is better)
Translates to: CYVVVDADPGWNADEGCFTQPKA*MLSLTA
Trigger: TGCTGTCAGTGAAAGCATCCAGGCCTTGGGCTGGGT...AAAGCATCCTTCATCTGCATTCCATCCTGGGTCAGCATCAACCACAACATAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
3UTR CAA 72 bp TACTGCAGCTGCAAGGGAATGCCTGCTATGTTGTGGTaGATGCTGACCCAGGATGGAATGCAGATGAAGGAT +
Preference number: 4 (lower is better)
Translates to: YCSCKGMPAMLW*MLTQDGMQMKD
Trigger: ATCCTTCATCTGCATTCCATCCTGGGTCAGCATCAACCACAACATAGCAGGCATTCCCTTGCAGCTGCAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR TCA 90 bp TCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCTGGTGATGCTTTCCCCCTaGTTAATCTGTGCAAACAGT +
Preference number: 4 (lower is better)
Translates to: SFLRKGHCYCTAAARECLVMLSP*LICANS
Trigger: ACTGTTTGCACAGATTAATCAGGGGGAAAGCATCAC...CAGGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR GCA 90 bp ATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCATCTCCGCGTGTTTCTaGACATCTCCCCCGATCTCC +
Preference number: 4 (lower is better)
Translates to: MLWWFSLKLFPMGIKAVIISACF*TSPPIS
Trigger: GGAGATCGGGGGAGATGTGCAGAAACACGCGGAGAT...GATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR CCA 90 bp ATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCACCCAGCCCAAGGCCTaGATGCTTTCACTGACAGCA +
Preference number: 4 (lower is better)
Translates to: MLWWFSLKLFPMGIKAVITQPKA*MLSLTA
Trigger: TGCTGTCAGTGAAAGCATCCAGGCCTTGGGCTGGGT...GATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR TCA 90 bp CTAGAGGGAGCACTGGGATTTTGCAATGCTGTGCAAGATTCTGATGTAAGTCGATGGAACTGCTCCTTTTaGAGGGCTGTCTCCATATCC +
Preference number: 4 (lower is better)
Translates to: LEGALGFCNAVQDSDVSRWNCSF*RAVSIS
Trigger: GGATATGGAGACAGCCCTTCAAAAGGAGCAGTTCCA...TCGACTTACATCAGAATCTTGCACAGCATTGCAAAATCCCAGTGCTCCCTCTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR TCA 90 bp ATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCTGGAACTGCTCCTTTTaGAGGGCTGTCTCCATATCC +
Preference number: 4 (lower is better)
Translates to: MLWWFSLKLFPMGIKAVIWNCSF*RAVSIS
Trigger: GGATATGGAGACAGCCCTTCAAAAGGAGCAGTTCCA...GATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR CCA 90 bp AATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATAACTTCAGGCCTGTGTaGACCATCTCCGCGTGTTTC +
Preference number: 4 (lower is better)
Translates to: NAVVVFFKVVPHGNQGSHNFRPV*TISACF
Trigger: GAAACACGCGGAGATGGTCCACACAGGCCTGAAGTT...ATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR CCA 90 bp TCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCTGAAGGTTATAACTTCTTaGATCTGCTCCGAGATAGGT +
Preference number: 4 (lower is better)
Translates to: SFLRKGHCYCTAAARECLKVITS*ICSEIG
Trigger: ACCTATCTCGGAGCAGATCCAAGAAGTTATAACCTT...CAGGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR GCA 90 bp CTAGAGGGAGCACTGGGATTTTGCAATGCTGTGCAAGATTCTGATGTAAGTCGAATAACTTCTTGGATCTaGTCCGAGATAGGTGCCAAC +
Preference number: 4 (lower is better)
Translates to: LEGALGFCNAVQDSDVSRITSWI*SEIGAN
Trigger: GTTGGCACCTATCTCGGAGCAGATCCAAGAAGTTAT...TCGACTTACATCAGAATCTTGCACAGCATTGCAAAATCCCAGTGCTCCCTCTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR GCA 90 bp TGCTATGTTGTGGTTGATGCTGACCCAGGATGGAATGCAGATGAAGGATGCTTTATAACTTCTTGGATCTaGTCCGAGATAGGTGCCAAC +
Preference number: 4 (lower is better)
Translates to: CYVVVDADPGWNADEGCFITSWI*SEIGAN
Trigger: GTTGGCACCTATCTCGGAGCAGATCCAAGAAGTTAT...AAAGCATCCTTCATCTGCATTCCATCCTGGGTCAGCATCAACCACAACATAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR CCA 90 bp ACTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCGATTTGTGTAAAACATaGCCGCGTCATTCATCTCTT +
Preference number: 4 (lower is better)
Translates to: TSFLRKGHCYCTAAARECDLCKT*PRHSSL
Trigger: AAGAGATGAATGACGCGGCCATGTTTTACACAAATC...GCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR TCA 90 bp ACTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCTTTGCAATGTTGTGTTaGCACACTTGTAGATGTAAG +
Preference number: 4 (lower is better)
Translates to: TSFLRKGHCYCTAAARECFAMLC*HTCRCK
Trigger: CTTACATCTACAAGTGTGTCAACACAACATTGCAAA...GCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR GCA 90 bp CTAGAGGGAGCACTGGGATTTTGCAATGCTGTGCAAGATTCTGATGTAAGTCGACTGCTCCGAGATAGGTaGCAACAAATCAGAAAGTTT +
Preference number: 4 (lower is better)
Translates to: LEGALGFCNAVQDSDVSRLLRDR*QQIRKF
Trigger: AAACTTTCTGATTTGTTGGCACCTATCTCGGAGCAG...TCGACTTACATCAGAATCTTGCACAGCATTGCAAAATCCCAGTGCTCCCTCTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR TCA 90 bp AATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATGTGATGCTTTCCCCCTaGTTAATCTGTGCAAACAGT +
Preference number: 4 (lower is better)
Translates to: NAVVVFFKVVPHGNQGSHVMLSP*LICANS
Trigger: ACTGTTTGCACAGATTAATCAGGGGGAAAGCATCAC...ATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR GCA 90 bp ATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCTCTCCATATCCACAGTaGATGTCTGAAGTATGTGAC +
Preference number: 4 (lower is better)
Translates to: MLWWFSLKLFPMGIKAVISPYPQ*MSEVCD
Trigger: GTCACATACTTCAGACATGCACTGTGGATATGGAGA...GATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR CCA 90 bp TGCTATGTTGTGGTTGATGCTGACCCAGGATGGAATGCAGATGAAGGATGCTTTAAGGTTATAACTTCTTaGATCTGCTCCGAGATAGGT +
Preference number: 4 (lower is better)
Translates to: CYVVVDADPGWNADEGCFKVITS*ICSEIG
Trigger: ACCTATCTCGGAGCAGATCCAAGAAGTTATAACCTT...AAAGCATCCTTCATCTGCATTCCATCCTGGGTCAGCATCAACCACAACATAGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR CCA 90 bp TGCTATGTTGTGGTTGATGCTGACCCAGGATGGAATGCAGATGAAGGATGCTTTGATTTGTGTAAAACATaGCCGCGTCATTCATCTCTT +
Preference number: 4 (lower is better)
Translates to: CYVVVDADPGWNADEGCFDLCKT*PRHSSL
Trigger: AAGAGATGAATGACGCGGCCATGTTTTACACAAATC...AAAGCATCCTTCATCTGCATTCCATCCTGGGTCAGCATCAACCACAACATAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR TCA 90 bp CTAGAGGGAGCACTGGGATTTTGCAATGCTGTGCAAGATTCTGATGTAAGTCGATTTGCAATGTTGTGTTaGCACACTTGTAGATGTAAG +
Preference number: 4 (lower is better)
Translates to: LEGALGFCNAVQDSDVSRFAMLC*HTCRCK
Trigger: CTTACATCTACAAGTGTGTCAACACAACATTGCAAA...TCGACTTACATCAGAATCTTGCACAGCATTGCAAAATCCCAGTGCTCCCTCTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR GCA 90 bp AATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATCTGCTCCGAGATAGGTaGCAACAAATCAGAAAGTTT +
Preference number: 4 (lower is better)
Translates to: NAVVVFFKVVPHGNQGSHLLRDR*QQIRKF
Trigger: AAACTTTCTGATTTGTTGGCACCTATCTCGGAGCAG...ATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR TCA 90 bp AATGCTGTGGTGGTTTTCTTTAAAGTTGTTCCCCATGGGAATCAAGGCAGTCATTTTGCAATGTTGTGTTaGCACACTTGTAGATGTAAG +
Preference number: 4 (lower is better)
Translates to: NAVVVFFKVVPHGNQGSHFAMLC*HTCRCK
Trigger: CTTACATCTACAAGTGTGTCAACACAACATTGCAAA...ATGACTGCCTTGATTCCCATGGGGAACAACTTTAAAGAAAACCACCACAGCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR CAA 90 bp CTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCGCCACAGGCCCCGTCTaGCTCCAGGCCAGGCCAGTA +
Preference number: 5 (lower is better)
Translates to: LPSSEKDTATVLQLQGNAATGPV*LQARPV
Trigger: TACTGGCCTGGCCTGGAGCAAGACGGGGCCTGTGGC...GGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR CAA 90 bp TCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCTGGCCACAGGCCCCGTCTaGCTCCAGGCCAGGCCAGTA +
Preference number: 5 (lower is better)
Translates to: SFLRKGHCYCTAAARECLATGPV*LQARPV
Trigger: TACTGGCCTGGCCTGGAGCAAGACGGGGCCTGTGGC...CAGGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR CAA 90 bp GCCGCCGTGGAGGTCATAGTCCTAGTCAGGTTCCTGCGCAGAGGCCCTAAGCTGATGGAACTGCTCCTTTaGAAGGGCTGTCTCCATATC +
Preference number: 5 (lower is better)
Translates to: AAVEVIVLVRFLRRGPKLMELLL*KGCLHI
Trigger: GATATGGAGACAGCCCTTCAAAAGGAGCAGTTCCAT...CAGCTTAGGGCCTCTGCGCAGGAACCTGACTAGGACTATGACCTCCACGGCGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR CAA 90 bp TCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCTGATGGAACTGCTCCTTTaGAAGGGCTGTCTCCATATC +
Preference number: 5 (lower is better)
Translates to: SFLRKGHCYCTAAARECLMELLL*KGCLHI
Trigger: GATATGGAGACAGCCCTTCAAAAGGAGCAGTTCCAT...CAGGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10
CDS-3UTR CAA 90 bp CTTCCTTCCTCAGAAAAGGACACTGCTACTGTACTGCAGCTGCAAGGGAATGCCATGGAACTGCTCCTTTaGAAGGGCTGTCTCCATATC +
Preference number: 5 (lower is better)
Translates to: LPSSEKDTATVLQLQGNAMELLL*KGCLHI
Trigger: GATATGGAGACAGCCCTTCAAAAGGAGCAGTTCCAT...GGCATTCCCTTGCAGCTGCAGTACAGTAGCAGTGTCCTTTTCTGAGGAAGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000069533.12
ENSMUST00000106255.8
ENSMUST00000106257.10