RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CANT1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025575

Ensembl transcript IDs: ENSMUST00000017620.10, ENSMUST00000092378.10, ENSMUST00000106287.8, ENSMUST00000106288.8, ENSMUST00000106289.9, ENSMUST00000164927.2

Found 197 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGTCTCCAGTCAGGTGCAGCCCCTCCCTCAACCACTGCTGAGGGGTaGAAGCATGGCAGCCCTTGGAAGTTGCAGAGGCCAGGGATGCTG +
Preference number: 1 (lower is better)
Translates to: GLQSGAAPPSTTAEG*KHGSPWKLQRPGML
Trigger: CAGCATCCCTGGCCTCTGCAACTTCCAAGGGCTGCCATGCTTTCACCCCTCAGCAGTGGTTGAGGGAGGGGCTGCACCTGACTGGAGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR TCA 90 bp GGTAGTCAGGCCCCAGTGGCAGTGGCTTCCTGTGGAAGGGGTTTGTaGCGGTCATCAGGGCCCTGTGCCTACAGCAGTACCGGTGTCCTG +
Preference number: 1 (lower is better)
Translates to: GSQAPVAVASCGRGL*RSSGPCAYSSTGVL
Trigger: CAGGACACCGGTACTGCTGTAGGCACAGGGCCCTGATGACCGTCACAAACCCCTTCCACAGGAAGCCACTGCCACTGGGGCCTGACTACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR CCA 90 bp CAGCAGCAGCCTGCTGTACTGAGGGTAGTCAGGCCCCAGTGGCAGTaGCTTCCTGTGGAAGGGGTTTGTGACGGTCATCAGGGCCCTGTG +
Preference number: 1 (lower is better)
Translates to: QQQPAVLRVVRPQWQ*LPVEGVCDGHQGPV
Trigger: CACAGGGCCCTGATGACCGTCACAAACCCCTTCCACAGGAAGCCACTGCCACTGGGGCCTGACTACCCTCAGTACAGCAGGCTGCTGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR TCA 90 bp AGCTGCAGCAGTGATCAATCCCTACCACCAAGTGGCAGTGCAGAGTaGGCGCGGGTGGGCGGAGCACCTGGGGTTCCTTGTATAGGACCC +
Preference number: 1 (lower is better)
Translates to: SCSSDQSLPPSGSAE*ARVGGAPGVPCIGP
Trigger: GGGTCCTATACAAGGAACCCCAGGTGCTCCGCCCACCCGCGCTCACTCTGCACTGCCACTTGGTGGTAGGGATTGATCACTGCTGCAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR TCA 90 bp CCTACAGCAGTACCGGTGTCCTGTTCTAAGGGTGCCGGAGGCAGGTaGGGTGCTGCTGCCTGCAGAATGACCTCTGAGCCTGACTCTGCT +
Preference number: 1 (lower is better)
Translates to: PTAVPVSCSKGAGGR*GAAACRMTSEPDSA
Trigger: AGCAGAGTCAGGCTCAGAGGTCATTCTGCAGGCAGCAGCACCTCACCTGCCTCCGGCACCCTTAGAACAGGACACCGGTACTGCTGTAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR CCA 90 bp TGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCCTCCCAAGGGGTaGCCCTCACCCTGCCATGTAAACATTCACTTTCCAGGGGTCTGC +
Preference number: 1 (lower is better)
Translates to: CAREAPECGQVPPKG*PSPCHVNIHFPGVC
Trigger: GCAGACCCCTGGAAAGTGAATGTTTACATGGCAGGGTGAGGGCCACCCCTTGGGAGGCACCTGCCCACACTCTGGAGCCTCTCTAGCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR CCA 90 bp ACAAGTCAGCAGCAGCCTGCTGTACTGAGGGTAGTCAGGCCCCAGTaGCAGTGGCTTCCTGTGGAAGGGGTTTGTGACGGTCATCAGGGC +
Preference number: 1 (lower is better)
Translates to: TSQQQPAVLRVVRPQ*QWLPVEGVCDGHQG
Trigger: GCCCTGATGACCGTCACAAACCCCTTCCACAGGAAGCCACTGCCACTGGGGCCTGACTACCCTCAGTACAGCAGGCTGCTGCTGACTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR GCA 90 bp GCTCCAGAGTGTGGGCAGGTGCCTCCCAAGGGGTGGCCCTCACCCTaGCATGTAAACATTCACTTTCCAGGGGTCTGCAGCATATGGAAT +
Preference number: 1 (lower is better)
Translates to: APECGQVPPKGWPSP*HVNIHFPGVCSIWN
Trigger: ATTCCATATGCTGCAGACCCCTGGAAAGTGAATGTTTACATGGCAGGGTGAGGGCCACCCCTTGGGAGGCACCTGCCCACACTCTGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR GCA 90 bp CACAACAGTACACGAAGACCTCAGCACCACAAGTCAGCAGCAGCCTaGTGTACTGAGGGTAGTCAGGCCCCAGTGGCAGTGGCTTCCTGT +
Preference number: 1 (lower is better)
Translates to: HNSTRRPQHHKSAAA*CTEGSQAPVAVASC
Trigger: ACAGGAAGCCACTGCCACTGGGGCCTGACTACCCTCAGTACAGCAGGCTGCTGCTGACTTGTGGTGCTGAGGTCTTCGTGTACTGTTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR GCA 90 bp GGGTGGCCCTCACCCTGCCATGTAAACATTCACTTTCCAGGGGTCTaGAGCATATGGAATGCCAGAGTCACATGGGAGAAAGAGGGCCCC +
Preference number: 1 (lower is better)
Translates to: GWPSPCHVNIHFPGV*SIWNARVTWEKEGP
Trigger: GGGGCCCTCTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGGAAAGTGAATGTTTACATGGCAGGGTGAGGGCCACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR TCA 90 bp CTCACGTCGCCACTGTGGGTGTGGGGACAAGTCCCTCGCTCCTGGAAGTGCATGAGTGGCAGTGCAGAGTaGGCGCGGGTGGGCGGAGCA +
Preference number: 2 (lower is better)
Translates to: LTSPLWVWGQVPRSWKCMSGSAE*ARVGGA
Trigger: TGCTCCGCCCACCCGCGCTCACTCTGCACTGCCACT...CATGCACTTCCAGGAGCGAGGGACTTGTCCCCACACCCACAGTGGCGACGTGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR TCA 90 bp CCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGAGGGCCCCAGTGGCAGTGCAGAGTaGGCGCGGGTGGGCGGAGCA +
Preference number: 2 (lower is better)
Translates to: PGVCSIWNARVTWEKEGPSGSAE*ARVGGA
Trigger: TGCTCCGCCCACCCGCGCTCACTCTGCACTGCCACT...GGGGCCCTCTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR TCA 90 bp TCAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGAGTGGCAGTGCAGAGTaGGCGCGGGTGGGCGGAGCA +
Preference number: 2 (lower is better)
Translates to: STARKQSCAREAPECGQVSGSAE*ARVGGA
Trigger: TGCTCCGCCCACCCGCGCTCACTCTGCACTGCCACT...CACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR TCA 90 bp CTCACGTCGCCACTGTGGGTGTGGGGACAAGTCCCTCGCTCCTGGAAGTGCATGGGCATGGCTGGATTCTaGAGGCCAGAGGCTCAGAAG +
Preference number: 2 (lower is better)
Translates to: LTSPLWVWGQVPRSWKCMGMAGF*RPEAQK
Trigger: CTTCTGAGCCTCTGGCCTTCAGAATCCAGCCATGCC...CATGCACTTCCAGGAGCGAGGGACTTGTCCCCACACCCACAGTGGCGACGTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp CAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCTGGCCCTCGCCCCTCTaGGCGTGCGAGCTTACTCAT +
Preference number: 2 (lower is better)
Translates to: QQLASNPVLERLQSVGRCWPSPL*ACELTH
Trigger: ATGAGTAAGCTCGCACGCCCAGAGGGGCGAGGGCCA...GCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp CCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGAGGGCCCCCCCCCAGTGCCTGGCTaGCAGGCCTACCTCAGACTA +
Preference number: 2 (lower is better)
Translates to: PGVCSIWNARVTWEKEGPPPVPG*QAYLRL
Trigger: TAGTCTGAGGTAGGCCTGCCAGCCAGGCACTGGGGG...GGGGCCCTCTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGG
61% GC, longest homopolymer 9 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp GGGCAGGTGCCTCCCAAGGGGTGGCCCTCACCCTGCCATGTAAACATTCACTTTCCCCCAGTGCCTGGCTaGCAGGCCTACCTCAGACTA +
Preference number: 2 (lower is better)
Translates to: GQVPPKGWPSPCHVNIHFPPVPG*QAYLRL
Trigger: TAGTCTGAGGTAGGCCTGCCAGCCAGGCACTGGGGG...AAAGTGAATGTTTACATGGCAGGGTGAGGGCCACCCCTTGGGAGGCACCTGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp GGGCAGGTGCCTCCCAAGGGGTGGCCCTCACCCTGCCATGTAAACATTCACTTTAGCAGTACACCCATATaGGCCGGGGCTCAGCTCCCT +
Preference number: 2 (lower is better)
Translates to: GQVPPKGWPSPCHVNIHFSSTPI*AGAQLP
Trigger: AGGGAGCTGAGCCCCGGCCCATATGGGTGTACTGCT...AAAGTGAATGTTTACATGGCAGGGTGAGGGCCACCCCTTGGGAGGCACCTGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp CAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCAGCAGTACACCCATATaGGCCGGGGCTCAGCTCCCT +
Preference number: 2 (lower is better)
Translates to: QQLASNPVLERLQSVGRCSSTPI*AGAQLP
Trigger: AGGGAGCTGAGCCCCGGCCCATATGGGTGTACTGCT...GCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR TCA 90 bp GGGCAGGTGCCTCCCAAGGGGTGGCCCTCACCCTGCCATGTAAACATTCACTTTGGCATGGCTGGATTCTaGAGGCCAGAGGCTCAGAAG +
Preference number: 2 (lower is better)
Translates to: GQVPPKGWPSPCHVNIHFGMAGF*RPEAQK
Trigger: CTTCTGAGCCTCTGGCCTTCAGAATCCAGCCATGCC...AAAGTGAATGTTTACATGGCAGGGTGAGGGCCACCCCTTGGGAGGCACCTGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp GGGCAGGTGCCTCCCAAGGGGTGGCCCTCACCCTGCCATGTAAACATTCACTTTATCCCTACCACCAAGTaGCAGTGCAGAGTGAGCGCG +
Preference number: 2 (lower is better)
Translates to: GQVPPKGWPSPCHVNIHFIPTTK*QCRVSA
Trigger: CGCGCTCACTCTGCACTGCCACTTGGTGGTAGGGAT...AAAGTGAATGTTTACATGGCAGGGTGAGGGCCACCCCTTGGGAGGCACCTGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR GCA 90 bp CTCACGTCGCCACTGTGGGTGTGGGGACAAGTCCCTCGCTCCTGGAAGTGCATGCACTTTCCAGGGGTCTaGAGCATATGGAATGCCAGA +
Preference number: 2 (lower is better)
Translates to: LTSPLWVWGQVPRSWKCMHFPGV*SIWNAR
Trigger: TCTGGCATTCCATATGCTGCAGACCCCTGGAAAGTG...CATGCACTTCCAGGAGCGAGGGACTTGTCCCCACACCCACAGTGGCGACGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp TCAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGATCCCTACCACCAAGTaGCAGTGCAGAGTGAGCGCG +
Preference number: 2 (lower is better)
Translates to: STARKQSCAREAPECGQVIPTTK*QCRVSA
Trigger: CGCGCTCACTCTGCACTGCCACTTGGTGGTAGGGAT...CACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp CAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCAGGGAAAGGCATGGCTaGATTCTGAAGGCCAGAGGC +
Preference number: 2 (lower is better)
Translates to: QQLASNPVLERLQSVGRCRERHG*ILKARG
Trigger: GCCTCTGGCCTTCAGAATCCAGCCATGCCTTTCCCT...GCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp CCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGAGGGCCCCGACCAGGGAAAGGCATaGCTGGATTCTGAAGGCCAG +
Preference number: 2 (lower is better)
Translates to: PGVCSIWNARVTWEKEGPDQGKA*LDSEGQ
Trigger: CTGGCCTTCAGAATCCAGCCATGCCTTTCCCTGGTC...GGGGCCCTCTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp ACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCCTGACCAGGGAAAGGCATaGCTGGATTCTGAAGGCCAG +
Preference number: 2 (lower is better)
Translates to: TARKQSCAREAPECGQVPDQGKA*LDSEGQ
Trigger: CTGGCCTTCAGAATCCAGCCATGCCTTTCCCTGGTC...AGGCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR TCA 90 bp AGTACACGAAGACCTCAGCACCACAAGTCAGCAGCAGCCTGCTGTACTGAGGGTCTGCTGCCTGCAGAATaGCCTCTGAGCCTGACTCTG +
Preference number: 2 (lower is better)
Translates to: STRRPQHHKSAAACCTEGLLPAE*PLSLTL
Trigger: CAGAGTCAGGCTCAGAGGTCATTCTGCAGGCAGCAG...ACCCTCAGTACAGCAGGCTGCTGCTGACTTGTGGTGCTGAGGTCTTCGTGTACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp AACACGGGGCTGCTTCAAAGACACATACTGGACAGAGAAGTGGTGGAAAGGCCATGGCCCTCGCCCCTCTaGGCGTGCGAGCTTACTCAT +
Preference number: 2 (lower is better)
Translates to: NTGLLQRHILDREVVERPWPSPL*ACELTH
Trigger: ATGAGTAAGCTCGCACGCCCAGAGGGGCGAGGGCCA...TGGCCTTTCCACCACTTCTCTGTCCAGTATGTGTCTTTGAAGCAGCCCCGTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp ACACAACCGAACACAGTTGACACACATCAAGGAGGTTTGGCTGAGCTCCCAGCATGGCCCTCGCCCCTCTaGGCGTGCGAGCTTACTCAT +
Preference number: 2 (lower is better)
Translates to: TQPNTVDTHQGGLAELPAWPSPL*ACELTH
Trigger: ATGAGTAAGCTCGCACGCCCAGAGGGGCGAGGGCCA...TGCTGGGAGCTCAGCCAAACCTCCTTGATGTGTGTCAACTGTGTTCGGTTGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp CAGCCCTTGGAAGTTGCAGAGGCCAGGGATGCTGAGACTCTTTCTGTAAAAGCTCCCCCAGTGCCTGGCTaGCAGGCCTACCTCAGACTA +
Preference number: 2 (lower is better)
Translates to: QPLEVAEARDAETLSVKAPPVPG*QAYLRL
Trigger: TAGTCTGAGGTAGGCCTGCCAGCCAGGCACTGGGGG...AGCTTTTACAGAAAGAGTCTCAGCATCCCTGGCCTCTGCAACTTCCAAGGGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp CAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCGGGGTCTGCAGCATATaGAATGCCAGAGTCACATGG +
Preference number: 2 (lower is better)
Translates to: QQLASNPVLERLQSVGRCGVCSI*NARVTW
Trigger: CCATGTGACTCTGGCATTCCATATGCTGCAGACCCC...GCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp ACACAACCGAACACAGTTGACACACATCAAGGAGGTTTGGCTGAGCTCCCAGCAAGAGGCTCCAGAGTGTaGGCAGGTGCCTCCCAAGGG +
Preference number: 2 (lower is better)
Translates to: TQPNTVDTHQGGLAELPARGSRV*AGASQG
Trigger: CCCTTGGGAGGCACCTGCCCACACTCTGGAGCCTCT...TGCTGGGAGCTCAGCCAAACCTCCTTGATGTGTGTCAACTGTGTTCGGTTGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp AGTACACGAAGACCTCAGCACCACAAGTCAGCAGCAGCCTGCTGTACTGAGGGTAGGGAAAGGCATGGCTaGATTCTGAAGGCCAGAGGC +
Preference number: 2 (lower is better)
Translates to: STRRPQHHKSAAACCTEGRERHG*ILKARG
Trigger: GCCTCTGGCCTTCAGAATCCAGCCATGCCTTTCCCT...ACCCTCAGTACAGCAGGCTGCTGCTGACTTGTGGTGCTGAGGTCTTCGTGTACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp CAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCTACTGGACAGAGAAGTaGTGGAAAGGCCAGAGACCA +
Preference number: 2 (lower is better)
Translates to: QQLASNPVLERLQSVGRCYWTEK*WKGQRP
Trigger: TGGTCTCTGGCCTTTCCACCACTTCTCTGTCCAGTA...GCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp CCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGAGGGCCCCTACTGGACAGAGAAGTaGTGGAAAGGCCAGAGACCA +
Preference number: 2 (lower is better)
Translates to: PGVCSIWNARVTWEKEGPYWTEK*WKGQRP
Trigger: TGGTCTCTGGCCTTTCCACCACTTCTCTGTCCAGTA...GGGGCCCTCTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR CAA 90 bp GCCTGCAGAATGACCTCTGAGCCTGACTCTGCTGCCTTGGCTCTTTaGAACATGGACAGAACAGGACAGCAGAAAACAGTGAGGCCTCCC +
Preference number: 2 (lower is better)
Translates to: ACRMTSEPDSAALAL*NMDRTGQQKTVRPP
Trigger: GGGAGGCCTCACTGTTTTCTGCTGTCCTGTTCTGTCCATGTTCAAAAGAGCCAAGGCAGCAGAGTCAGGCTCAGAGGTCATTCTGCAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp ACACAACCGAACACAGTTGACACACATCAAGGAGGTTTGGCTGAGCTCCCAGCAAAGCATGGCAGCCCTTaGAAGTTGCAGAGGCCAGGG +
Preference number: 2 (lower is better)
Translates to: TQPNTVDTHQGGLAELPAKHGSP*KLQRPG
Trigger: CCCTGGCCTCTGCAACTTCCAAGGGCTGCCATGCTT...TGCTGGGAGCTCAGCCAAACCTCCTTGATGTGTGTCAACTGTGTTCGGTTGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR CAA 90 bp GGTGCTGCTGCCTGCAGAATGACCTCTGAGCCTGACTCTGCTGCCTaGGCTCTTTTGAACATGGACAGAACAGGACAGCAGAAAACAGTG +
Preference number: 2 (lower is better)
Translates to: GAAACRMTSEPDSAA*ALLNMDRTGQQKTV
Trigger: CACTGTTTTCTGCTGTCCTGTTCTGTCCATGTTCAAAAGAGCCAAGGCAGCAGAGTCAGGCTCAGAGGTCATTCTGCAGGCAGCAGCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp TTCACTTTCCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGATCCCTACCACCAAGTaGCAGTGCAGAGTGAGCGCG +
Preference number: 2 (lower is better)
Translates to: FTFQGSAAYGMPESHGRKIPTTK*QCRVSA
Trigger: CGCGCTCACTCTGCACTGCCACTTGGTGGTAGGGAT...CTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGGAAAGTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp AACACGGGGCTGCTTCAAAGACACATACTGGACAGAGAAGTGGTGGAAAGGCCAAGGGAAAGGCATGGCTaGATTCTGAAGGCCAGAGGC +
Preference number: 2 (lower is better)
Translates to: NTGLLQRHILDREVVERPRERHG*ILKARG
Trigger: GCCTCTGGCCTTCAGAATCCAGCCATGCCTTTCCCT...TGGCCTTTCCACCACTTCTCTGTCCAGTATGTGTCTTTGAAGCAGCCCCGTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp ACACAACCGAACACAGTTGACACACATCAAGGAGGTTTGGCTGAGCTCCCAGCAGGGGTCTGCAGCATATaGAATGCCAGAGTCACATGG +
Preference number: 2 (lower is better)
Translates to: TQPNTVDTHQGGLAELPAGVCSI*NARVTW
Trigger: CCATGTGACTCTGGCATTCCATATGCTGCAGACCCC...TGCTGGGAGCTCAGCCAAACCTCCTTGATGTGTGTCAACTGTGTTCGGTTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR CAA 90 bp CTCAGAATCACACAACCGAACACAGTTGACACACATCAAGGAGGTTaGGCTGAGCTCCCAGCACAACAGTACACGAAGACCTCAGCACCA +
Preference number: 2 (lower is better)
Translates to: LRITQPNTVDTHQGG*AELPAQQYTKTSAP
Trigger: TGGTGCTGAGGTCTTCGTGTACTGTTGTGCTGGGAGCTCAGCCAAACCTCCTTGATGTGTGTCAACTGTGTTCGGTTGTGTGATTCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp ACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCCTTTCAAAGACACATACTaGACAGAGAAGTGGTGGAAA +
Preference number: 2 (lower is better)
Translates to: TARKQSCAREAPECGQVPFKDTY*TEKWWK
Trigger: TTTCCACCACTTCTCTGTCCAGTATGTGTCTTTGAA...AGGCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp ACACAACCGAACACAGTTGACACACATCAAGGAGGTTTGGCTGAGCTCCCAGCATTCAAAGACACATACTaGACAGAGAAGTGGTGGAAA +
Preference number: 2 (lower is better)
Translates to: TQPNTVDTHQGGLAELPAFKDTY*TEKWWK
Trigger: TTTCCACCACTTCTCTGTCCAGTATGTGTCTTTGAA...TGCTGGGAGCTCAGCCAAACCTCCTTGATGTGTGTCAACTGTGTTCGGTTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CCA 90 bp CAGCCCTTGGAAGTTGCAGAGGCCAGGGATGCTGAGACTCTTTCTGTAAAAGCTTTCAAAGACACATACTaGACAGAGAAGTGGTGGAAA +
Preference number: 2 (lower is better)
Translates to: QPLEVAEARDAETLSVKAFKDTY*TEKWWK
Trigger: TTTCCACCACTTCTCTGTCCAGTATGTGTCTTTGAA...AGCTTTTACAGAAAGAGTCTCAGCATCCCTGGCCTCTGCAACTTCCAAGGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR CCA 72 bp TGGCAGTGCAGAGTGAGCGCGGGTGGGCGGAGCACCTaGGGTTCCTTGTATAGGACCCCTTGCTCCCAGTCT +
Preference number: 3 (lower is better)
Translates to: WQCRVSAGGRST*GSLYRTPCSQS
Trigger: AGACTGGGAGCAAGGGGTCCTATACAAGGAACCCCAGGTGCTCCGCCCACCCGCGCTCACTCTGCACTGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR TCA 72 bp GCCCCAGTGGCAGTGGCTTCCTGTGGAAGGGGTTTGTaGCGGTCATCAGGGCCCTGTGCCTACAGCAGTACC +
Preference number: 3 (lower is better)
Translates to: APVAVASCGRGL*RSSGPCAYSST
Trigger: GGTACTGCTGTAGGCACAGGGCCCTGATGACCGTCACAAACCCCTTCCACAGGAAGCCACTGCCACTGGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR CCA 72 bp CAAACGAGTGGAGGCGCTCCCGGTTTTTATGAGTCCTaGTGTAACACAGCCGCTGGCCCTCGCCCCTCTGGG +
Preference number: 3 (lower is better)
Translates to: QTSGGAPGFYES*CNTAAGPRPSG
Trigger: CCCAGAGGGGCGAGGGCCAGCGGCTGTGTTACACCAGGACTCATAAAAACCGGGAGCGCCTCCACTCGTTTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR TCA 72 bp AGTGATCAATCCCTACCACCAAGTGGCAGTGCAGAGTaGGCGCGGGTGGGCGGAGCACCTGGGGTTCCTTGT +
Preference number: 3 (lower is better)
Translates to: SDQSLPPSGSAE*ARVGGAPGVPC
Trigger: ACAAGGAACCCCAGGTGCTCCGCCCACCCGCGCTCACTCTGCACTGCCACTTGGTGGTAGGGATTGATCACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR TCA 72 bp TCAGGTGCAGCCCCTCCCTCAACCACTGCTGAGGGGTaGAAGCATGGCAGCCCTTGGAAGTTGCAGAGGCCA +
Preference number: 3 (lower is better)
Translates to: SGAAPPSTTAEG*KHGSPWKLQRP
Trigger: TGGCCTCTGCAACTTCCAAGGGCTGCCATGCTTTCACCCCTCAGCAGTGGTTGAGGGAGGGGCTGCACCTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR GCA 72 bp TGTGGGCAGGTGCCTCCCAAGGGGTGGCCCTCACCCTaGCATGTAAACATTCACTTTCCAGGGGTCTGCAGC +
Preference number: 3 (lower is better)
Translates to: CGQVPPKGWPSP*HVNIHFPGVCS
Trigger: GCTGCAGACCCCTGGAAAGTGAATGTTTACATGGCAGGGTGAGGGCCACCCCTTGGGAGGCACCTGCCCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR GCA 72 bp ACACGAAGACCTCAGCACCACAAGTCAGCAGCAGCCTaGTGTACTGAGGGTAGTCAGGCCCCAGTGGCAGTG +
Preference number: 3 (lower is better)
Translates to: TRRPQHHKSAAA*CTEGSQAPVAV
Trigger: CACTGCCACTGGGGCCTGACTACCCTCAGTACAGCAGGCTGCTGCTGACTTGTGGTGCTGAGGTCTTCGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR CCA 72 bp GAGGCTCCAGAGTGTGGGCAGGTGCCTCCCAAGGGGTaGCCCTCACCCTGCCATGTAAACATTCACTTTCCA +
Preference number: 3 (lower is better)
Translates to: EAPECGQVPPKG*PSPCHVNIHFP
Trigger: TGGAAAGTGAATGTTTACATGGCAGGGTGAGGGCCACCCCTTGGGAGGCACCTGCCCACACTCTGGAGCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CAA 90 bp AGTACACGAAGACCTCAGCACCACAAGTCAGCAGCAGCCTGCTGTACTGAGGGTAGCACCTGGGGTTCCTaGTATAGGACCCCTTGCTCC +
Preference number: 3 (lower is better)
Translates to: STRRPQHHKSAAACCTEGSTWGS*YRTPCS
Trigger: GGAGCAAGGGGTCCTATACAAGGAACCCCAGGTGCT...ACCCTCAGTACAGCAGGCTGCTGCTGACTTGTGGTGCTGAGGTCTTCGTGTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CAA 90 bp ACACAACCGAACACAGTTGACACACATCAAGGAGGTTTGGCTGAGCTCCCAGCAGGCAGCCCTTGGAAGTaGCAGAGGCCAGGGATGCTG +
Preference number: 3 (lower is better)
Translates to: TQPNTVDTHQGGLAELPAGSPWK*QRPGML
Trigger: CAGCATCCCTGGCCTCTGCAACTTCCAAGGGCTGCC...TGCTGGGAGCTCAGCCAAACCTCCTTGATGTGTGTCAACTGTGTTCGGTTGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CAA 90 bp AACACGGGGCTGCTTCAAAGACACATACTGGACAGAGAAGTGGTGGAAAGGCCAAGCACCTGGGGTTCCTaGTATAGGACCCCTTGCTCC +
Preference number: 3 (lower is better)
Translates to: NTGLLQRHILDREVVERPSTWGS*YRTPCS
Trigger: GGAGCAAGGGGTCCTATACAAGGAACCCCAGGTGCT...TGGCCTTTCCACCACTTCTCTGTCCAGTATGTGTCTTTGAAGCAGCCCCGTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR-3UTR CAA 90 bp TTCACTTTCCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGAGCACCTGGGGTTCCTaGTATAGGACCCCTTGCTCC +
Preference number: 3 (lower is better)
Translates to: FTFQGSAAYGMPESHGRKSTWGS*YRTPCS
Trigger: GGAGCAAGGGGTCCTATACAAGGAACCCCAGGTGCT...CTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGGAAAGTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR CCA 72 bp CATGTAAACATTCACTTTCCAGGGGTCTGCAGCATATaGAATGCCAGAGTCACATGGGAGAAAGAGGGCCCC +
Preference number: 3 (lower is better)
Translates to: HVNIHFPGVCSI*NARVTWEKEGP
Trigger: GGGGCCCTCTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGGAAAGTGAATGTTTACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR GCA 72 bp TTTATTGTTTATAAAACAATGGAAAGACACAATCATTaGTCAGGGAAAGGAAGGTATGTGGAAGGCTCCTCA +
Preference number: 3 (lower is better)
Translates to: FIVYKTMERHNH*SGKGRYVEGSS
Trigger: TGAGGAGCCTTCCACATACCTTCCTTTCCCTGAGCAATGATTGTGTCTTTCCATTGTTTTATAAACAATAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp CTCACGTCGCCACTGTGGGTGTGGGGACAAGTCCCTCGCTCCTGGAAGTGCATGCACCCACAAAGGACGTaGGGATCACCCGCCAGCGGG +
Preference number: 4 (lower is better)
Translates to: LTSPLWVWGQVPRSWKCMHPQRT*GSPASG
Trigger: CCCGCTGGCGGGTGATCCTCACGTCCTTTGTGGGTG...CATGCACTTCCAGGAGCGAGGGACTTGTCCCCACACCCACAGTGGCGACGTGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR CAA 72 bp AGAGTGAGCGCGGGTGGGCGGAGCACCTGGGGTTCCTaGTATAGGACCCCTTGCTCCCAGTCTCCGAGCAGT +
Preference number: 4 (lower is better)
Translates to: RVSAGGRSTWGS*YRTPCSQSPSS
Trigger: ACTGCTCGGAGACTGGGAGCAAGGGGTCCTATACAAGGAACCCCAGGTGCTCCGCCCACCCGCGCTCACTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp CCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGAGGGCCCCCACCCACAAAGGACGTaGGGATCACCCGCCAGCGGG +
Preference number: 4 (lower is better)
Translates to: PGVCSIWNARVTWEKEGPHPQRT*GSPASG
Trigger: CCCGCTGGCGGGTGATCCTCACGTCCTTTGTGGGTG...GGGGCCCTCTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp GGGCAGGTGCCTCCCAAGGGGTGGCCCTCACCCTGCCATGTAAACATTCACTTTCCTGGCACTGGGCCCTaGTGGTGGGAGTACAGCAGC +
Preference number: 4 (lower is better)
Translates to: GQVPPKGWPSPCHVNIHFPGTGP*WWEYSS
Trigger: GCTGCTGTACTCCCACCATCAGGGCCCAGTGCCAGG...AAAGTGAATGTTTACATGGCAGGGTGAGGGCCACCCCTTGGGAGGCACCTGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp ACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCCTCCTGGCACTGGGCCCTaGTGGTGGGAGTACAGCAGC +
Preference number: 4 (lower is better)
Translates to: TARKQSCAREAPECGQVPPGTGP*WWEYSS
Trigger: GCTGCTGTACTCCCACCATCAGGGCCCAGTGCCAGG...AGGCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp CTCACGTCGCCACTGTGGGTGTGGGGACAAGTCCCTCGCTCCTGGAAGTGCATGTCTCGTGGTCCACACTaGCCCTGTGGCCTACCACCT +
Preference number: 4 (lower is better)
Translates to: LTSPLWVWGQVPRSWKCMSRGPH*PCGLPP
Trigger: AGGTGGTAGGCCACAGGGGCAGTGTGGACCACGAGA...CATGCACTTCCAGGAGCGAGGGACTTGTCCCCACACCCACAGTGGCGACGTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp CTCACGTCGCCACTGTGGGTGTGGGGACAAGTCCCTCGCTCCTGGAAGTGCATGCCTGAAGTCCTGGGCTaGGCTCAGCAGGAGGTTGCT +
Preference number: 4 (lower is better)
Translates to: LTSPLWVWGQVPRSWKCMPEVLG*AQQEVA
Trigger: AGCAACCTCCTGCTGAGCGCAGCCCAGGACTTCAGG...CATGCACTTCCAGGAGCGAGGGACTTGTCCCCACACCCACAGTGGCGACGTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp CTCACGTCGCCACTGTGGGTGTGGGGACAAGTCCCTCGCTCCTGGAAGTGCATGGGAAGCGAGGGTCCGTaGCCTTGGTCATGGATGCCA +
Preference number: 4 (lower is better)
Translates to: LTSPLWVWGQVPRSWKCMGSEGP*PWSWMP
Trigger: TGGCATCCATGACCAAGGCCACGGACCCTCGCTTCC...CATGCACTTCCAGGAGCGAGGGACTTGTCCCCACACCCACAGTGGCGACGTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp GGGCAGGTGCCTCCCAAGGGGTGGCCCTCACCCTGCCATGTAAACATTCACTTTGGGCCTGCCTGGCACTaGGCCCTGATGGTGGGAGTA +
Preference number: 4 (lower is better)
Translates to: GQVPPKGWPSPCHVNIHFGPAWH*ALMVGV
Trigger: TACTCCCACCATCAGGGCCCAGTGCCAGGCAGGCCC...AAAGTGAATGTTTACATGGCAGGGTGAGGGCCACCCCTTGGGAGGCACCTGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp CAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCCCTCCCCTGTCGTGGTaGTCCACTCCTTGCCCAGGC +
Preference number: 4 (lower is better)
Translates to: QQLASNPVLERLQSVGRCPPLSW*STPCPG
Trigger: GCCTGGGCAAGGAGTGGACCACCACGACAGGGGAGG...GCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp CTCACGTCGCCACTGTGGGTGTGGGGACAAGTCCCTCGCTCCTGGAAGTGCATGTCACCTCCCCTGTCGTaGTGGTCCACTCCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: LTSPLWVWGQVPRSWKCMSPPLS*WSTPCP
Trigger: TGGGCAAGGAGTGGACCACCACGACAGGGGAGGTGA...CATGCACTTCCAGGAGCGAGGGACTTGTCCCCACACCCACAGTGGCGACGTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp TCAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCACCCACAAAGGACGTaGGGATCACCCGCCAGCGGG +
Preference number: 4 (lower is better)
Translates to: STARKQSCAREAPECGQVHPQRT*GSPASG
Trigger: CCCGCTGGCGGGTGATCCTCACGTCCTTTGTGGGTG...CACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp CTCACGTCGCCACTGTGGGTGTGGGGACAAGTCCCTCGCTCCTGGAAGTGCATGTCACAGAGATGTCCCTaGAGTCCTGGGCTGCGCTCA +
Preference number: 4 (lower is better)
Translates to: LTSPLWVWGQVPRSWKCMSQRCP*SPGLRS
Trigger: TGAGCGCAGCCCAGGACTTCAGGGACATCTCTGTGA...CATGCACTTCCAGGAGCGAGGGACTTGTCCCCACACCCACAGTGGCGACGTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp CTCACGTCGCCACTGTGGGTGTGGGGACAAGTCCCTCGCTCCTGGAAGTGCATGAAGGATGAGAAGCCGTaGGTGGGGATCAGAGTCCCC +
Preference number: 4 (lower is better)
Translates to: LTSPLWVWGQVPRSWKCMKDEKP*VGIRVP
Trigger: GGGGACTCTGATCCCCACCCACGGCTTCTCATCCTT...CATGCACTTCCAGGAGCGAGGGACTTGTCCCCACACCCACAGTGGCGACGTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp CTCACGTCGCCACTGTGGGTGTGGGGACAAGTCCCTCGCTCCTGGAAGTGCATGGATCACCCAGGGCACTaGTTTGGTGCCTTCGATCTG +
Preference number: 4 (lower is better)
Translates to: LTSPLWVWGQVPRSWKCMDHPGH*FGAFDL
Trigger: CAGATCGAAGGCACCAAAGCAGTGCCCTGGGTGATC...CATGCACTTCCAGGAGCGAGGGACTTGTCCCCACACCCACAGTGGCGACGTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp CAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCCCTGAAGTCCTGGGCTaGGCTCAGCAGGAGGTTGCT +
Preference number: 4 (lower is better)
Translates to: QQLASNPVLERLQSVGRCPEVLG*AQQEVA
Trigger: AGCAACCTCCTGCTGAGCGCAGCCCAGGACTTCAGG...GCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp AGTACACGAAGACCTCAGCACCACAAGTCAGCAGCAGCCTGCTGTACTGAGGGTCCTCCCCTGTCGTGGTaGTCCACTCCTTGCCCAGGC +
Preference number: 4 (lower is better)
Translates to: STRRPQHHKSAAACCTEGPPLSW*STPCPG
Trigger: GCCTGGGCAAGGAGTGGACCACCACGACAGGGGAGG...ACCCTCAGTACAGCAGGCTGCTGCTGACTTGTGGTGCTGAGGTCTTCGTGTACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp ACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCCTTCACCTCCCCTGTCGTaGTGGTCCACTCCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: TARKQSCAREAPECGQVPSPPLS*WSTPCP
Trigger: TGGGCAAGGAGTGGACCACCACGACAGGGGAGGTGA...AGGCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp CAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCTCCACACTGCCCCTGTaGCCTACCACCTTCACCCAC +
Preference number: 4 (lower is better)
Translates to: QQLASNPVLERLQSVGRCSTLPL*PTTFTH
Trigger: GTGGGTGAAGGTGGTAGGCCACAGGGGCAGTGTGGA...GCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp CTCACGTCGCCACTGTGGGTGTGGGGACAAGTCCCTCGCTCCTGGAAGTGCATGATGAGAAGCCGTGGGTaGGGATCAGAGTCCCCACTT +
Preference number: 4 (lower is better)
Translates to: LTSPLWVWGQVPRSWKCMMRSRG*GSESPL
Trigger: AAGTGGGGACTCTGATCCCCACCCACGGCTTCTCAT...CATGCACTTCCAGGAGCGAGGGACTTGTCCCCACACCCACAGTGGCGACGTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp TCAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGGAAGACAATCAGGTCTaGGAGCTCCATGCCCCGCCC +
Preference number: 4 (lower is better)
Translates to: STARKQSCAREAPECGQVEDNQV*ELHAPP
Trigger: GGGCGGGGCATGGAGCTCTCAGACCTGATTGTCTTC...CACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp CCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGAGGGCCCCTCACAGAGATGTCCCTaGAGTCCTGGGCTGCGCTCA +
Preference number: 4 (lower is better)
Translates to: PGVCSIWNARVTWEKEGPSQRCP*SPGLRS
Trigger: TGAGCGCAGCCCAGGACTTCAGGGACATCTCTGTGA...GGGGCCCTCTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp TCAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGTCTCGTGGTCCACACTaGCCCTGTGGCCTACCACCT +
Preference number: 4 (lower is better)
Translates to: STARKQSCAREAPECGQVSRGPH*PCGLPP
Trigger: AGGTGGTAGGCCACAGGGGCAGTGTGGACCACGAGA...CACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp CCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGAGGGCCCCAGGAAGAACCAGCGCTaGAGTGTGTCGCTCCAGCAG +
Preference number: 4 (lower is better)
Translates to: PGVCSIWNARVTWEKEGPRKNQR*SVSLQQ
Trigger: CTGCTGGAGCGACACACTGCAGCGCTGGTTCTTCCT...GGGGCCCTCTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp CCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGAGGGCCCCGGAGGTTGCTGCCCTTaGGTTCATCGTCCTTCTCGC +
Preference number: 4 (lower is better)
Translates to: PGVCSIWNARVTWEKEGPGGCCP*VHRPSR
Trigger: GCGAGAAGGACGATGAACGCAAGGGCAGCAACCTCC...GGGGCCCTCTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp CTCACGTCGCCACTGTGGGTGTGGGGACAAGTCCCTCGCTCCTGGAAGTGCATGATCAGAGTCCCCACTTaGCTCACAGAGATGTCCCTG +
Preference number: 4 (lower is better)
Translates to: LTSPLWVWGQVPRSWKCMIRVPT*LTEMSL
Trigger: CAGGGACATCTCTGTGAGGCAAGTGGGGACTCTGAT...CATGCACTTCCAGGAGCGAGGGACTTGTCCCCACACCCACAGTGGCGACGTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp GGGCAGGTGCCTCCCAAGGGGTGGCCCTCACCCTGCCATGTAAACATTCACTTTAAGGATGAGAAGCCGTaGGTGGGGATCAGAGTCCCC +
Preference number: 4 (lower is better)
Translates to: GQVPPKGWPSPCHVNIHFKDEKP*VGIRVP
Trigger: GGGGACTCTGATCCCCACCCACGGCTTCTCATCCTT...AAAGTGAATGTTTACATGGCAGGGTGAGGGCCACCCCTTGGGAGGCACCTGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp CAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCCTTCGATCTGGTAGATaGCCCCTGTGCGGTCATCCA +
Preference number: 4 (lower is better)
Translates to: QQLASNPVLERLQSVGRCLRSGR*PLCGHP
Trigger: TGGATGACCGCACAGGGGTCATCTACCAGATCGAAG...GCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp TCAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGTCACAGAGATGTCCCTaGAGTCCTGGGCTGCGCTCA +
Preference number: 4 (lower is better)
Translates to: STARKQSCAREAPECGQVSQRCP*SPGLRS
Trigger: TGAGCGCAGCCCAGGACTTCAGGGACATCTCTGTGA...CACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp CTCACGTCGCCACTGTGGGTGTGGGGACAAGTCCCTCGCTCCTGGAAGTGCATGCAAGTCAGCAATGACTaGGATTCGGTACCGAATCCC +
Preference number: 4 (lower is better)
Translates to: LTSPLWVWGQVPRSWKCMQVSND*DSVPNP
Trigger: GGGATTCGGTACCGAATCGCAGTCATTGCTGACTTG...CATGCACTTCCAGGAGCGAGGGACTTGTCCCCACACCCACAGTGGCGACGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp AGTACACGAAGACCTCAGCACCACAAGTCAGCAGCAGCCTGCTGTACTGAGGGTTGGTGGTCCACTCCTTaGCCAGGCCGCCCACATACA +
Preference number: 4 (lower is better)
Translates to: STRRPQHHKSAAACCTEGWWSTP*PGRPHT
Trigger: TGTATGTGGGCGGCCTGGGCAAGGAGTGGACCACCA...ACCCTCAGTACAGCAGGCTGCTGCTGACTTGTGGTGCTGAGGTCTTCGTGTACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp ACACAACCGAACACAGTTGACACACATCAAGGAGGTTTGGCTGAGCTCCCAGCAGGGCCTGCCTGGCACTaGGCCCTGATGGTGGGAGTA +
Preference number: 4 (lower is better)
Translates to: TQPNTVDTHQGGLAELPAGPAWH*ALMVGV
Trigger: TACTCCCACCATCAGGGCCCAGTGCCAGGCAGGCCC...TGCTGGGAGCTCAGCCAAACCTCCTTGATGTGTGTCAACTGTGTTCGGTTGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp CCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGAGGGCCCCCCCAGGGCACTGCTTTaGTGCCTTCGATCTGGTAGA +
Preference number: 4 (lower is better)
Translates to: PGVCSIWNARVTWEKEGPPRALL*CLRSGR
Trigger: TCTACCAGATCGAAGGCACCAAAGCAGTGCCCTGGG...GGGGCCCTCTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGG
58% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp GGGCAGGTGCCTCCCAAGGGGTGGCCCTCACCCTGCCATGTAAACATTCACTTTCCCAGGGCACTGCTTTaGTGCCTTCGATCTGGTAGA +
Preference number: 4 (lower is better)
Translates to: GQVPPKGWPSPCHVNIHFPRALL*CLRSGR
Trigger: TCTACCAGATCGAAGGCACCAAAGCAGTGCCCTGGG...AAAGTGAATGTTTACATGGCAGGGTGAGGGCCACCCCTTGGGAGGCACCTGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR CAA 72 bp CCCCCAGTGCCTGGCTGGCAGGCCTACCTCAGACTATaGTGTGCTCCCAGGGTTAAGCTAGGGTTTAACACG +
Preference number: 4 (lower is better)
Translates to: PPVPGWQAYLRL*CAPRVKLGFNT
Trigger: CGTGTTAAACCCTAGCTTAACCCTGGGAGCACACAATAGTCTGAGGTAGGCCTGCCAGCCAGGCACTGGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp CAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCCTGATCCGGAGGGAGTaGATAGGCTCATTCCATTCC +
Preference number: 4 (lower is better)
Translates to: QQLASNPVLERLQSVGRCLIRRE*IGSFHS
Trigger: GGAATGGAATGAGCCTATGCACTCCCTCCGGATCAG...GCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp GGGCAGGTGCCTCCCAAGGGGTGGCCCTCACCCTGCCATGTAAACATTCACTTTCTGATCCGGAGGGAGTaGATAGGCTCATTCCATTCC +
Preference number: 4 (lower is better)
Translates to: GQVPPKGWPSPCHVNIHFLIRRE*IGSFHS
Trigger: GGAATGGAATGAGCCTATGCACTCCCTCCGGATCAG...AAAGTGAATGTTTACATGGCAGGGTGAGGGCCACCCCTTGGGAGGCACCTGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp CCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGAGGGCCCCCTGATCCGGAGGGAGTaGATAGGCTCATTCCATTCC +
Preference number: 4 (lower is better)
Translates to: PGVCSIWNARVTWEKEGPLIRRE*IGSFHS
Trigger: GGAATGGAATGAGCCTATGCACTCCCTCCGGATCAG...GGGGCCCTCTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp AGGCCAGAGGCTCAGAAGATAGCTGCAGCAGTGATCAATCCCTACCACCAAGTGTCTCGTGGTCCACACTaGCCCTGTGGCCTACCACCT +
Preference number: 4 (lower is better)
Translates to: RPEAQKIAAAVINPYHQVSRGPH*PCGLPP
Trigger: AGGTGGTAGGCCACAGGGGCAGTGTGGACCACGAGA...CACTTGGTGGTAGGGATTGATCACTGCTGCAGCTATCTTCTGAGCCTCTGGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp AGTACACGAAGACCTCAGCACCACAAGTCAGCAGCAGCCTGCTGTACTGAGGGTAGGAAGAACCAGCGCTaGAGTGTGTCGCTCCAGCAG +
Preference number: 4 (lower is better)
Translates to: STRRPQHHKSAAACCTEGRKNQR*SVSLQQ
Trigger: CTGCTGGAGCGACACACTGCAGCGCTGGTTCTTCCT...ACCCTCAGTACAGCAGGCTGCTGCTGACTTGTGGTGCTGAGGTCTTCGTGTACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp CCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGAGGGCCCCATCAGAGTCCCCACTTaGCTCACAGAGATGTCCCTG +
Preference number: 4 (lower is better)
Translates to: PGVCSIWNARVTWEKEGPIRVPT*LTEMSL
Trigger: CAGGGACATCTCTGTGAGGCAAGTGGGGACTCTGAT...GGGGCCCTCTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp CTCACGTCGCCACTGTGGGTGTGGGGACAAGTCCCTCGCTCCTGGAAGTGCATGCTTCGTACTTCACAGTaGCGATCTTGGTCTCTGGAA +
Preference number: 4 (lower is better)
Translates to: LTSPLWVWGQVPRSWKCMLRTSQ*RSWSLE
Trigger: TTCCAGAGACCAAGATCGGCACTGTGAAGTACGAAG...CATGCACTTCCAGGAGCGAGGGACTTGTCCCCACACCCACAGTGGCGACGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp TCAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGTCATTCCATTCCCGCTaGTCAAAGGGCTGGATGGGC +
Preference number: 4 (lower is better)
Translates to: STARKQSCAREAPECGQVSFHSR*SKGWMG
Trigger: GCCCATCCAGCCCTTTGACCAGCGGGAATGGAATGA...CACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp TTCACTTTCCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGGGGCCTGCCTGGCACTaGGCCCTGATGGTGGGAGTA +
Preference number: 4 (lower is better)
Translates to: FTFQGSAAYGMPESHGRKGPAWH*ALMVGV
Trigger: TACTCCCACCATCAGGGCCCAGTGCCAGGCAGGCCC...CTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGGAAAGTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp AGGCCAGAGGCTCAGAAGATAGCTGCAGCAGTGATCAATCCCTACCACCAAGTGTCACCTCCCCTGTCGTaGTGGTCCACTCCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: RPEAQKIAAAVINPYHQVSPPLS*WSTPCP
Trigger: TGGGCAAGGAGTGGACCACCACGACAGGGGAGGTGA...CACTTGGTGGTAGGGATTGATCACTGCTGCAGCTATCTTCTGAGCCTCTGGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp ACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCCTAGAGCCACGATGATCTaGTCATCCGTGTTGGGGATG +
Preference number: 4 (lower is better)
Translates to: TARKQSCAREAPECGQVPRATMI*SSVLGM
Trigger: CATCCCCAACACGGATGACCAGATCATCGTGGCTCT...AGGCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp CCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGAGGGCCCCTCACAGTGCCGATCTTaGTCTCTGGAAGCAGGAAGC +
Preference number: 4 (lower is better)
Translates to: PGVCSIWNARVTWEKEGPSQCRS*SLEAGS
Trigger: GCTTCCTGCTTCCAGAGACCAAGATCGGCACTGTGA...GGGGCCCTCTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp ACACAACCGAACACAGTTGACACACATCAAGGAGGTTTGGCTGAGCTCCCAGCAGAAGACAATCAGGTCTaGGAGCTCCATGCCCCGCCC +
Preference number: 4 (lower is better)
Translates to: TQPNTVDTHQGGLAELPAEDNQV*ELHAPP
Trigger: GGGCGGGGCATGGAGCTCTCAGACCTGATTGTCTTC...TGCTGGGAGCTCAGCCAAACCTCCTTGATGTGTGTCAACTGTGTTCGGTTGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp CAGCCCTTGGAAGTTGCAGAGGCCAGGGATGCTGAGACTCTTTCTGTAAAAGCTGAAGACAATCAGGTCTaGGAGCTCCATGCCCCGCCC +
Preference number: 4 (lower is better)
Translates to: QPLEVAEARDAETLSVKAEDNQV*ELHAPP
Trigger: GGGCGGGGCATGGAGCTCTCAGACCTGATTGTCTTC...AGCTTTTACAGAAAGAGTCTCAGCATCCCTGGCCTCTGCAACTTCCAAGGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp GGGCAGGTGCCTCCCAAGGGGTGGCCCTCACCCTGCCATGTAAACATTCACTTTGATGAATTTGAAGGATaGGAAGCCGTGGGTGGGGAT +
Preference number: 4 (lower is better)
Translates to: GQVPPKGWPSPCHVNIHFDEFEG*EAVGGD
Trigger: ATCCCCACCCACGGCTTCTCATCCTTCAAATTCATC...AAAGTGAATGTTTACATGGCAGGGTGAGGGCCACCCCTTGGGAGGCACCTGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp ACACAACCGAACACAGTTGACACACATCAAGGAGGTTTGGCTGAGCTCCCAGCATGGTGGTCCACTCCTTaGCCAGGCCGCCCACATACA +
Preference number: 4 (lower is better)
Translates to: TQPNTVDTHQGGLAELPAWWSTP*PGRPHT
Trigger: TGTATGTGGGCGGCCTGGGCAAGGAGTGGACCACCA...TGCTGGGAGCTCAGCCAAACCTCCTTGATGTGTGTCAACTGTGTTCGGTTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp AACACGGGGCTGCTTCAAAGACACATACTGGACAGAGAAGTGGTGGAAAGGCCATGGTGGTCCACTCCTTaGCCAGGCCGCCCACATACA +
Preference number: 4 (lower is better)
Translates to: NTGLLQRHILDREVVERPWWSTP*PGRPHT
Trigger: TGTATGTGGGCGGCCTGGGCAAGGAGTGGACCACCA...TGGCCTTTCCACCACTTCTCTGTCCAGTATGTGTCTTTGAAGCAGCCCCGTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp AACACGGGGCTGCTTCAAAGACACATACTGGACAGAGAAGTGGTGGAAAGGCCACCTGAAGTCCTGGGCTaGGCTCAGCAGGAGGTTGCT +
Preference number: 4 (lower is better)
Translates to: NTGLLQRHILDREVVERPPEVLG*AQQEVA
Trigger: AGCAACCTCCTGCTGAGCGCAGCCCAGGACTTCAGG...TGGCCTTTCCACCACTTCTCTGTCCAGTATGTGTCTTTGAAGCAGCCCCGTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp ACACAACCGAACACAGTTGACACACATCAAGGAGGTTTGGCTGAGCTCCCAGCAGGAAGCGAGGGTCCGTaGCCTTGGTCATGGATGCCA +
Preference number: 4 (lower is better)
Translates to: TQPNTVDTHQGGLAELPAGSEGP*PWSWMP
Trigger: TGGCATCCATGACCAAGGCCACGGACCCTCGCTTCC...TGCTGGGAGCTCAGCCAAACCTCCTTGATGTGTGTCAACTGTGTTCGGTTGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp AGTACACGAAGACCTCAGCACCACAAGTCAGCAGCAGCCTGCTGTACTGAGGGTTCAGGGCGTTGTAGCTaGACACCCAGTTCTCGTGGT +
Preference number: 4 (lower is better)
Translates to: STRRPQHHKSAAACCTEGSGRCS*TPSSRG
Trigger: ACCACGAGAACTGGGTGTCCAGCTACAACGCCCTGA...ACCCTCAGTACAGCAGGCTGCTGCTGACTTGTGGTGCTGAGGTCTTCGTGTACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp AGTACACGAAGACCTCAGCACCACAAGTCAGCAGCAGCCTGCTGTACTGAGGGTATGAGAAGCCGTGGGTaGGGATCAGAGTCCCCACTT +
Preference number: 4 (lower is better)
Translates to: STRRPQHHKSAAACCTEGMRSRG*GSESPL
Trigger: AAGTGGGGACTCTGATCCCCACCCACGGCTTCTCAT...ACCCTCAGTACAGCAGGCTGCTGCTGACTTGTGGTGCTGAGGTCTTCGTGTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp AGGCCAGAGGCTCAGAAGATAGCTGCAGCAGTGATCAATCCCTACCACCAAGTGAAGGATGAGAAGCCGTaGGTGGGGATCAGAGTCCCC +
Preference number: 4 (lower is better)
Translates to: RPEAQKIAAAVINPYHQVKDEKP*VGIRVP
Trigger: GGGGACTCTGATCCCCACCCACGGCTTCTCATCCTT...CACTTGGTGGTAGGGATTGATCACTGCTGCAGCTATCTTCTGAGCCTCTGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp CCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGAGGGCCCCCAAGCCATTCAGCTTTaGAACCCTTCTCCACAGTTC +
Preference number: 4 (lower is better)
Translates to: PGVCSIWNARVTWEKEGPQAIQL*NPSPQF
Trigger: GAACTGTGGAGAAGGGTTTCAAAGCTGAATGGCTTG...GGGGCCCTCTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp TCAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGGATGAATTTGAAGGATaGGAAGCCGTGGGTGGGGAT +
Preference number: 4 (lower is better)
Translates to: STARKQSCAREAPECGQVDEFEG*EAVGGD
Trigger: ATCCCCACCCACGGCTTCTCATCCTTCAAATTCATC...CACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp TCAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCAAGTCAGCAATGACTaGGATTCGGTACCGAATCCC +
Preference number: 4 (lower is better)
Translates to: STARKQSCAREAPECGQVQVSND*DSVPNP
Trigger: GGGATTCGGTACCGAATCGCAGTCATTGCTGACTTG...CACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp AACACGGGGCTGCTTCAAAGACACATACTGGACAGAGAAGTGGTGGAAAGGCCAAGGAAGAACCAGCGCTaGAGTGTGTCGCTCCAGCAG +
Preference number: 4 (lower is better)
Translates to: NTGLLQRHILDREVVERPRKNQR*SVSLQQ
Trigger: CTGCTGGAGCGACACACTGCAGCGCTGGTTCTTCCT...TGGCCTTTCCACCACTTCTCTGTCCAGTATGTGTCTTTGAAGCAGCCCCGTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp AACACGGGGCTGCTTCAAAGACACATACTGGACAGAGAAGTGGTGGAAAGGCCAGGAGGTTGCTGCCCTTaGGTTCATCGTCCTTCTCGC +
Preference number: 4 (lower is better)
Translates to: NTGLLQRHILDREVVERPGGCCP*VHRPSR
Trigger: GCGAGAAGGACGATGAACGCAAGGGCAGCAACCTCC...TGGCCTTTCCACCACTTCTCTGTCCAGTATGTGTCTTTGAAGCAGCCCCGTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp CAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCCTTCGTACTTCACAGTaGCGATCTTGGTCTCTGGAA +
Preference number: 4 (lower is better)
Translates to: QQLASNPVLERLQSVGRCLRTSQ*RSWSLE
Trigger: TTCCAGAGACCAAGATCGGCACTGTGAAGTACGAAG...GCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp AACACGGGGCTGCTTCAAAGACACATACTGGACAGAGAAGTGGTGGAAAGGCCACAAGTGTTTTCTTCCTaGGCCCTGGACCCCGTGTCC +
Preference number: 4 (lower is better)
Translates to: NTGLLQRHILDREVVERPQVFSS*ALDPVS
Trigger: GGACACGGGGTCCAGGGCCCAGGAAGAAAACACTTG...TGGCCTTTCCACCACTTCTCTGTCCAGTATGTGTCTTTGAAGCAGCCCCGTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp ACACAACCGAACACAGTTGACACACATCAAGGAGGTTTGGCTGAGCTCCCAGCACAAGTGTTTTCTTCCTaGGCCCTGGACCCCGTGTCC +
Preference number: 4 (lower is better)
Translates to: TQPNTVDTHQGGLAELPAQVFSS*ALDPVS
Trigger: GGACACGGGGTCCAGGGCCCAGGAAGAAAACACTTG...TGCTGGGAGCTCAGCCAAACCTCCTTGATGTGTGTCAACTGTGTTCGGTTGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp AGGCCAGAGGCTCAGAAGATAGCTGCAGCAGTGATCAATCCCTACCACCAAGTGTCAGGGCGTTGTAGCTaGACACCCAGTTCTCGTGGT +
Preference number: 4 (lower is better)
Translates to: RPEAQKIAAAVINPYHQVSGRCS*TPSSRG
Trigger: ACCACGAGAACTGGGTGTCCAGCTACAACGCCCTGA...CACTTGGTGGTAGGGATTGATCACTGCTGCAGCTATCTTCTGAGCCTCTGGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp ACACAACCGAACACAGTTGACACACATCAAGGAGGTTTGGCTGAGCTCCCAGCACTTCGATCTGGTAGATaGCCCCTGTGCGGTCATCCA +
Preference number: 4 (lower is better)
Translates to: TQPNTVDTHQGGLAELPALRSGR*PLCGHP
Trigger: TGGATGACCGCACAGGGGTCATCTACCAGATCGAAG...TGCTGGGAGCTCAGCCAAACCTCCTTGATGTGTGTCAACTGTGTTCGGTTGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp ACACAACCGAACACAGTTGACACACATCAAGGAGGTTTGGCTGAGCTCCCAGCAGATCACCCAGGGCACTaGTTTGGTGCCTTCGATCTG +
Preference number: 4 (lower is better)
Translates to: TQPNTVDTHQGGLAELPADHPGH*FGAFDL
Trigger: CAGATCGAAGGCACCAAAGCAGTGCCCTGGGTGATC...TGCTGGGAGCTCAGCCAAACCTCCTTGATGTGTGTCAACTGTGTTCGGTTGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp AACACGGGGCTGCTTCAAAGACACATACTGGACAGAGAAGTGGTGGAAAGGCCAGATCACCCAGGGCACTaGTTTGGTGCCTTCGATCTG +
Preference number: 4 (lower is better)
Translates to: NTGLLQRHILDREVVERPDHPGH*FGAFDL
Trigger: CAGATCGAAGGCACCAAAGCAGTGCCCTGGGTGATC...TGGCCTTTCCACCACTTCTCTGTCCAGTATGTGTCTTTGAAGCAGCCCCGTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp ACACAACCGAACACAGTTGACACACATCAAGGAGGTTTGGCTGAGCTCCCAGCATCATTCCATTCCCGCTaGTCAAAGGGCTGGATGGGC +
Preference number: 4 (lower is better)
Translates to: TQPNTVDTHQGGLAELPASFHSR*SKGWMG
Trigger: GCCCATCCAGCCCTTTGACCAGCGGGAATGGAATGA...TGCTGGGAGCTCAGCCAAACCTCCTTGATGTGTGTCAACTGTGTTCGGTTGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp TTCACTTTCCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGCAAGTGTTTTCTTCCTaGGCCCTGGACCCCGTGTCC +
Preference number: 4 (lower is better)
Translates to: FTFQGSAAYGMPESHGRKQVFSS*ALDPVS
Trigger: GGACACGGGGTCCAGGGCCCAGGAAGAAAACACTTG...CTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGGAAAGTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp CAGCCCTTGGAAGTTGCAGAGGCCAGGGATGCTGAGACTCTTTCTGTAAAAGCTCCCAGGGCACTGCTTTaGTGCCTTCGATCTGGTAGA +
Preference number: 4 (lower is better)
Translates to: QPLEVAEARDAETLSVKAPRALL*CLRSGR
Trigger: TCTACCAGATCGAAGGCACCAAAGCAGTGCCCTGGG...AGCTTTTACAGAAAGAGTCTCAGCATCCCTGGCCTCTGCAACTTCCAAGGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp CAGCCCTTGGAAGTTGCAGAGGCCAGGGATGCTGAGACTCTTTCTGTAAAAGCTTCAGGGCGTTGTAGCTaGACACCCAGTTCTCGTGGT +
Preference number: 4 (lower is better)
Translates to: QPLEVAEARDAETLSVKASGRCS*TPSSRG
Trigger: ACCACGAGAACTGGGTGTCCAGCTACAACGCCCTGA...AGCTTTTACAGAAAGAGTCTCAGCATCCCTGGCCTCTGCAACTTCCAAGGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp AGGCCAGAGGCTCAGAAGATAGCTGCAGCAGTGATCAATCCCTACCACCAAGTGTCACAGTGCCGATCTTaGTCTCTGGAAGCAGGAAGC +
Preference number: 4 (lower is better)
Translates to: RPEAQKIAAAVINPYHQVSQCRS*SLEAGS
Trigger: GCTTCCTGCTTCCAGAGACCAAGATCGGCACTGTGA...CACTTGGTGGTAGGGATTGATCACTGCTGCAGCTATCTTCTGAGCCTCTGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp GGGCAGGTGCCTCCCAAGGGGTGGCCCTCACCCTGCCATGTAAACATTCACTTTAGTAGAGTTTCCCATTaGAGACAATCAGGTCTGAGA +
Preference number: 4 (lower is better)
Translates to: GQVPPKGWPSPCHVNIHFSRVSH*RQSGLR
Trigger: TCTCAGACCTGATTGTCTTCAATGGGAAACTCTACT...AAAGTGAATGTTTACATGGCAGGGTGAGGGCCACCCCTTGGGAGGCACCTGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp ACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCCTAGTAGAGTTTCCCATTaGAGACAATCAGGTCTGAGA +
Preference number: 4 (lower is better)
Translates to: TARKQSCAREAPECGQVPSRVSH*RQSGLR
Trigger: TCTCAGACCTGATTGTCTTCAATGGGAAACTCTACT...AGGCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp AGGCCAGAGGCTCAGAAGATAGCTGCAGCAGTGATCAATCCCTACCACCAAGTGGATGAATTTGAAGGATaGGAAGCCGTGGGTGGGGAT +
Preference number: 4 (lower is better)
Translates to: RPEAQKIAAAVINPYHQVDEFEG*EAVGGD
Trigger: ATCCCCACCCACGGCTTCTCATCCTTCAAATTCATC...CACTTGGTGGTAGGGATTGATCACTGCTGCAGCTATCTTCTGAGCCTCTGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp TTCACTTTCCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGTCATTCCATTCCCGCTaGTCAAAGGGCTGGATGGGC +
Preference number: 4 (lower is better)
Translates to: FTFQGSAAYGMPESHGRKSFHSR*SKGWMG
Trigger: GCCCATCCAGCCCTTTGACCAGCGGGAATGGAATGA...CTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGGAAAGTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp TTCACTTTCCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGATGAGAAGCCGTGGGTaGGGATCAGAGTCCCCACTT +
Preference number: 4 (lower is better)
Translates to: FTFQGSAAYGMPESHGRKMRSRG*GSESPL
Trigger: AAGTGGGGACTCTGATCCCCACCCACGGCTTCTCAT...CTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGGAAAGTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CCA 90 bp ACACAACCGAACACAGTTGACACACATCAAGGAGGTTTGGCTGAGCTCCCAGCAAGAGCCACGATGATCTaGTCATCCGTGTTGGGGATG +
Preference number: 4 (lower is better)
Translates to: TQPNTVDTHQGGLAELPARATMI*SSVLGM
Trigger: CATCCCCAACACGGATGACCAGATCATCGTGGCTCT...TGCTGGGAGCTCAGCCAAACCTCCTTGATGTGTGTCAACTGTGTTCGGTTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR GCA 90 bp AGGCCAGAGGCTCAGAAGATAGCTGCAGCAGTGATCAATCCCTACCACCAAGTGCTTCGTACTTCACAGTaGCGATCTTGGTCTCTGGAA +
Preference number: 4 (lower is better)
Translates to: RPEAQKIAAAVINPYHQVLRTSQ*RSWSLE
Trigger: TTCCAGAGACCAAGATCGGCACTGTGAAGTACGAAG...CACTTGGTGGTAGGGATTGATCACTGCTGCAGCTATCTTCTGAGCCTCTGGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR CAA 72 bp ACACAACCGAACACAGTTGACACACATCAAGGAGGTTaGGCTGAGCTCCCAGCACAACAGTACACGAAGACC +
Preference number: 4 (lower is better)
Translates to: TQPNTVDTHQGG*AELPAQQYTKT
Trigger: GGTCTTCGTGTACTGTTGTGCTGGGAGCTCAGCCAAACCTCCTTGATGTGTGTCAACTGTGTTCGGTTGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp CAGCCCTTGGAAGTTGCAGAGGCCAGGGATGCTGAGACTCTTTCTGTAAAAGCTCAAGCCATTCAGCTTTaGAACCCTTCTCCACAGTTC +
Preference number: 4 (lower is better)
Translates to: QPLEVAEARDAETLSVKAQAIQL*NPSPQF
Trigger: GAACTGTGGAGAAGGGTTTCAAAGCTGAATGGCTTG...AGCTTTTACAGAAAGAGTCTCAGCATCCCTGGCCTCTGCAACTTCCAAGGGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR CAA 72 bp ATGACCTCTGAGCCTGACTCTGCTGCCTTGGCTCTTTaGAACATGGACAGAACAGGACAGCAGAAAACAGTG +
Preference number: 4 (lower is better)
Translates to: MTSEPDSAALAL*NMDRTGQQKTV
Trigger: CACTGTTTTCTGCTGTCCTGTTCTGTCCATGTTCAAAAGAGCCAAGGCAGCAGAGTCAGGCTCAGAGGTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
3UTR CAA 72 bp TCATCTTTCAGCTCAGAATCACACAACCGAACACAGTaGACACACATCAAGGAGGTTTGGCTGAGCTCCCAG +
Preference number: 4 (lower is better)
Translates to: SSFSSESHNRTQ*THIKEVWLSSQ
Trigger: CTGGGAGCTCAGCCAAACCTCCTTGATGTGTGTCAACTGTGTTCGGTTGTGTGATTCTGAGCTGAAAGATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR TCA 90 bp AACACGGGGCTGCTTCAAAGACACATACTGGACAGAGAAGTGGTGGAAAGGCCAAGTAGAGTTTCCCATTaGAGACAATCAGGTCTGAGA +
Preference number: 4 (lower is better)
Translates to: NTGLLQRHILDREVVERPSRVSH*RQSGLR
Trigger: TCTCAGACCTGATTGTCTTCAATGGGAAACTCTACT...TGGCCTTTCCACCACTTCTCTGTCCAGTATGTGTCTTTGAAGCAGCCCCGTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS TCA 90 bp AGAACCAGCGCTGCAGTGTGTCGCTCCAGCAGGCGGACTCGTGAATaGGGTAGCCTGGTGGTCGGATCCCGGCGGCTGCTCTCAGGGCGT +
Preference number: 5 (lower is better)
Translates to: RTSAAVCRSSRRTRE*GSLVVGSRRLLSGR
Trigger: ACGCCCTGAGAGCAGCCGCCGGGATCCGACCACCAGGCTACCTCATTCACGAGTCCGCCTGCTGGAGCGACACACTGCAGCGCTGGTTCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000106289.9
ENSMUST00000164927.2
CDS-3UTR CAA 90 bp CTCACGTCGCCACTGTGGGTGTGGGGACAAGTCCCTCGCTCCTGGAAGTGCATGGTGGTGGTCCACTCCTaGCCCAGGCCGCCCACATAC +
Preference number: 5 (lower is better)
Translates to: LTSPLWVWGQVPRSWKCMVVVHS*PRPPTY
Trigger: GTATGTGGGCGGCCTGGGCAAGGAGTGGACCACCAC...CATGCACTTCCAGGAGCGAGGGACTTGTCCCCACACCCACAGTGGCGACGTGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CAA 90 bp ACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCCTGTGGTGGTCCACTCCTaGCCCAGGCCGCCCACATAC +
Preference number: 5 (lower is better)
Translates to: TARKQSCAREAPECGQVPVVVHS*PRPPTY
Trigger: GTATGTGGGCGGCCTGGGCAAGGAGTGGACCACCAC...AGGCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS GCA 90 bp CAGGGTTCTCGTTCATCACCTCCCCTGTCGTGGTGGTCCACTCCTTaGCCAGGCCGCCCACATACAGGTGTTCGTCCTTCACAGCAAGCC +
Preference number: 5 (lower is better)
Translates to: QGSRSSPPLSWWSTP*PGRPHTGVRPSQQA
Trigger: GGCTTGCTGTGAAGGACGAACACCTGTATGTGGGCGGCCTGGGCAAGGAGTGGACCACCACGACAGGGGAGGTGATGAACGAGAACCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000106289.9
ENSMUST00000164927.2
CDS CCA 90 bp GGGATCAGAGTCCCCACTTGCCTCACAGAGATGTCCCTGAAGTCCTaGGCTGCGCTCAGCAGGAGGTTGCTGCCCTTGCGTTCATCGTCC +
Preference number: 5 (lower is better)
Translates to: GIRVPTCLTEMSLKS*AALSRRLLPLRSSS
Trigger: GGACGATGAACGCAAGGGCAGCAACCTCCTGCTGAGCGCAGCCCAGGACTTCAGGGACATCTCTGTGAGGCAAGTGGGGACTCTGATCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000106289.9
ENSMUST00000164927.2
CDS-3UTR CAA 90 bp GGGCAGGTGCCTCCCAAGGGGTGGCCCTCACCCTGCCATGTAAACATTCACTTTCGAGGGTCCGTGGCCTaGGTCATGGATGCCAGCACA +
Preference number: 5 (lower is better)
Translates to: GQVPPKGWPSPCHVNIHFRGSVA*VMDAST
Trigger: TGTGCTGGCATCCATGACCAAGGCCACGGACCCTCG...AAAGTGAATGTTTACATGGCAGGGTGAGGGCCACCCCTTGGGAGGCACCTGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CAA 90 bp ACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCCTGCGCTCAGCAGGAGGTaGCTGCCCTTGCGTTCATCG +
Preference number: 5 (lower is better)
Translates to: TARKQSCAREAPECGQVPALSRR*LPLRSS
Trigger: CGATGAACGCAAGGGCAGCAACCTCCTGCTGAGCGC...AGGCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS GCA 90 bp CAGAGTCCCCACTTGCCTCACAGAGATGTCCCTGAAGTCCTGGGCTaGGCTCAGCAGGAGGTTGCTGCCCTTGCGTTCATCGTCCTTCTC +
Preference number: 5 (lower is better)
Translates to: QSPHLPHRDVPEVLG*AQQEVAALAFIVLL
Trigger: GAGAAGGACGATGAACGCAAGGGCAGCAACCTCCTGCTGAGCGCAGCCCAGGACTTCAGGGACATCTCTGTGAGGCAAGTGGGGACTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000106289.9
ENSMUST00000164927.2
CDS-3UTR CAA 90 bp TCAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCGAGGGTCCGTGGCCTaGGTCATGGATGCCAGCACA +
Preference number: 5 (lower is better)
Translates to: STARKQSCAREAPECGQVRGSVA*VMDAST
Trigger: TGTGCTGGCATCCATGACCAAGGCCACGGACCCTCG...CACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CAA 90 bp CAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCAGGAGGTTGCTGCCCTaGCGTTCATCGTCCTTCTCG +
Preference number: 5 (lower is better)
Translates to: QQLASNPVLERLQSVGRCRRLLP*RSSSFS
Trigger: CGAGAAGGACGATGAACGCAAGGGCAGCAACCTCCT...GCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS GCA 90 bp AATTTGAAGGATGAGAAGCCGTGGGTGGGGATCAGAGTCCCCACTTaGCTCACAGAGATGTCCCTGAAGTCCTGGGCTGCGCTCAGCAGG +
Preference number: 5 (lower is better)
Translates to: NLKDEKPWVGIRVPT*LTEMSLKSWAALSR
Trigger: CCTGCTGAGCGCAGCCCAGGACTTCAGGGACATCTCTGTGAGGCAAGTGGGGACTCTGATCCCCACCCACGGCTTCTCATCCTTCAAATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000106289.9
ENSMUST00000164927.2
CDS-3UTR CAA 90 bp ACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCCTGATCAGAGTCCCCACTaGCCTCACAGAGATGTCCCT +
Preference number: 5 (lower is better)
Translates to: TARKQSCAREAPECGQVPDQSPH*PHRDVP
Trigger: AGGGACATCTCTGTGAGGCAAGTGGGGACTCTGATC...AGGCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CAA 90 bp CCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGAGGGCCCCGATCAGAGTCCCCACTaGCCTCACAGAGATGTCCCT +
Preference number: 5 (lower is better)
Translates to: PGVCSIWNARVTWEKEGPDQSPH*PHRDVP
Trigger: AGGGACATCTCTGTGAGGCAAGTGGGGACTCTGATC...GGGGCCCTCTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CAA 90 bp CTCACGTCGCCACTGTGGGTGTGGGGACAAGTCCCTCGCTCCTGGAAGTGCATGGTGTTGGGGATGAATTaGAAGGATGAGAAGCCGTGG +
Preference number: 5 (lower is better)
Translates to: LTSPLWVWGQVPRSWKCMVLGMN*KDEKPW
Trigger: CCACGGCTTCTCATCCTTCAAATTCATCCCCAACAC...CATGCACTTCCAGGAGCGAGGGACTTGTCCCCACACCCACAGTGGCGACGTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CAA 90 bp ACACAACCGAACACAGTTGACACACATCAAGGAGGTTTGGCTGAGCTCCCAGCACGAGGGTCCGTGGCCTaGGTCATGGATGCCAGCACA +
Preference number: 5 (lower is better)
Translates to: TQPNTVDTHQGGLAELPARGSVA*VMDAST
Trigger: TGTGCTGGCATCCATGACCAAGGCCACGGACCCTCG...TGCTGGGAGCTCAGCCAAACCTCCTTGATGTGTGTCAACTGTGTTCGGTTGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CAA 90 bp AGGCCAGAGGCTCAGAAGATAGCTGCAGCAGTGATCAATCCCTACCACCAAGTGTGGCTGAGCCTCCAATaGTGCGCATTGTGGGTGGGG +
Preference number: 5 (lower is better)
Translates to: RPEAQKIAAAVINPYHQVWLSLQ*CALWVG
Trigger: CCCCACCCACAATGCGCACAATTGGAGGCTCAGCCA...CACTTGGTGGTAGGGATTGATCACTGCTGCAGCTATCTTCTGAGCCTCTGGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CAA 90 bp CTCACGTCGCCACTGTGGGTGTGGGGACAAGTCCCTCGCTCCTGGAAGTGCATGGCAAGCCATTCAGCTTaGAAACCCTTCTCCACAGTT +
Preference number: 5 (lower is better)
Translates to: LTSPLWVWGQVPRSWKCMASHSA*KPFSTV
Trigger: AACTGTGGAGAAGGGTTTCAAAGCTGAATGGCTTGC...CATGCACTTCCAGGAGCGAGGGACTTGTCCCCACACCCACAGTGGCGACGTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CAA 90 bp TTCACTTTCCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGGTGGTGGTCCACTCCTaGCCCAGGCCGCCCACATAC +
Preference number: 5 (lower is better)
Translates to: FTFQGSAAYGMPESHGRKVVVHS*PRPPTY
Trigger: GTATGTGGGCGGCCTGGGCAAGGAGTGGACCACCAC...CTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGGAAAGTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CAA 90 bp AACACGGGGCTGCTTCAAAGACACATACTGGACAGAGAAGTGGTGGAAAGGCCAGCGCTCAGCAGGAGGTaGCTGCCCTTGCGTTCATCG +
Preference number: 5 (lower is better)
Translates to: NTGLLQRHILDREVVERPALSRR*LPLRSS
Trigger: CGATGAACGCAAGGGCAGCAACCTCCTGCTGAGCGC...TGGCCTTTCCACCACTTCTCTGTCCAGTATGTGTCTTTGAAGCAGCCCCGTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CAA 90 bp ACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGCCTTTCACAGTGCCGATCTaGGTCTCTGGAAGCAGGAAG +
Preference number: 5 (lower is better)
Translates to: TARKQSCAREAPECGQVPFTVPI*VSGSRK
Trigger: CTTCCTGCTTCCAGAGACCAAGATCGGCACTGTGAA...AGGCACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS GCA 90 bp CTTCTCCACAGTTCCATCGCCATCAGAAAGGATCACCCAGGGCACTaGTTTGGTGCCTTCGATCTGGTAGATGACCCCTGTGCGGTCATC +
Preference number: 5 (lower is better)
Translates to: LLHSSIAIRKDHPGH*FGAFDLVDDPCAVI
Trigger: GATGACCGCACAGGGGTCATCTACCAGATCGAAGGCACCAAAGCAGTGCCCTGGGTGATCCTTTCTGATGGCGATGGAACTGTGGAGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000106289.9
ENSMUST00000164927.2
CDS-3UTR CAA 90 bp ACACAACCGAACACAGTTGACACACATCAAGGAGGTTTGGCTGAGCTCCCAGCATGGCTGAGCCTCCAATaGTGCGCATTGTGGGTGGGG +
Preference number: 5 (lower is better)
Translates to: TQPNTVDTHQGGLAELPAWLSLQ*CALWVG
Trigger: CCCCACCCACAATGCGCACAATTGGAGGCTCAGCCA...TGCTGGGAGCTCAGCCAAACCTCCTTGATGTGTGTCAACTGTGTTCGGTTGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CAA 90 bp AGGCCAGAGGCTCAGAAGATAGCTGCAGCAGTGATCAATCCCTACCACCAAGTGAGGAGGTTGCTGCCCTaGCGTTCATCGTCCTTCTCG +
Preference number: 5 (lower is better)
Translates to: RPEAQKIAAAVINPYHQVRRLLP*RSSSFS
Trigger: CGAGAAGGACGATGAACGCAAGGGCAGCAACCTCCT...CACTTGGTGGTAGGGATTGATCACTGCTGCAGCTATCTTCTGAGCCTCTGGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CAA 90 bp TCAACAGCTCGCAAGCAATCCTGTGCTAGAGAGGCTCCAGAGTGTGGGCAGGTGGTGTTGGGGATGAATTaGAAGGATGAGAAGCCGTGG +
Preference number: 5 (lower is better)
Translates to: STARKQSCAREAPECGQVVLGMN*KDEKPW
Trigger: CCACGGCTTCTCATCCTTCAAATTCATCCCCAACAC...CACCTGCCCACACTCTGGAGCCTCTCTAGCACAGGATTGCTTGCGAGCTGTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS CCA 90 bp GATGAACTCTATTCCTTCGTACTTCACAGTGCCGATCTTGGTCTCTaGAAGCAGGAAGCGGCCGTCCAGCGTGAAGGCCATGACATAGGT +
Preference number: 5 (lower is better)
Translates to: DELYSFVLHSADLGL*KQEAAVQREGHDIG
Trigger: ACCTATGTCATGGCCTTCACGCTGGACGGCCGCTTCCTGCTTCCAGAGACCAAGATCGGCACTGTGAAGTACGAAGGAATAGAGTTCATC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000106289.9
ENSMUST00000164927.2
CDS-3UTR CAA 90 bp CCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGAGGGCCCCATCTGGTCATCCGTGTaGGGGATGAATTTGAAGGAT +
Preference number: 5 (lower is better)
Translates to: PGVCSIWNARVTWEKEGPIWSSV*GMNLKD
Trigger: ATCCTTCAAATTCATCCCCAACACGGATGACCAGAT...GGGGCCCTCTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CAA 90 bp GGGCAGGTGCCTCCCAAGGGGTGGCCCTCACCCTGCCATGTAAACATTCACTTTATCTGGTCATCCGTGTaGGGGATGAATTTGAAGGAT +
Preference number: 5 (lower is better)
Translates to: GQVPPKGWPSPCHVNIHFIWSSV*GMNLKD
Trigger: ATCCTTCAAATTCATCCCCAACACGGATGACCAGAT...AAAGTGAATGTTTACATGGCAGGGTGAGGGCCACCCCTTGGGAGGCACCTGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS TCA 90 bp CGCCCACATACAGGTGTTCGTCCTTCACAGCAAGCCATTCAGCTTTaGAACCCTTCTCCACAGTTCCATCGCCATCAGAAAGGATCACCC +
Preference number: 5 (lower is better)
Translates to: RPHTGVRPSQQAIQL*NPSPQFHRHQKGSP
Trigger: GGGTGATCCTTTCTGATGGCGATGGAACTGTGGAGAAGGGTTTCAAAGCTGAATGGCTTGCTGTGAAGGACGAACACCTGTATGTGGGCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000164927.2
CDS-3UTR CAA 90 bp AGTACACGAAGACCTCAGCACCACAAGTCAGCAGCAGCCTGCTGTACTGAGGGTGCAAGCCATTCAGCTTaGAAACCCTTCTCCACAGTT +
Preference number: 5 (lower is better)
Translates to: STRRPQHHKSAAACCTEGASHSA*KPFSTV
Trigger: AACTGTGGAGAAGGGTTTCAAAGCTGAATGGCTTGC...ACCCTCAGTACAGCAGGCTGCTGCTGACTTGTGGTGCTGAGGTCTTCGTGTACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CAA 90 bp AGGCCAGAGGCTCAGAAGATAGCTGCAGCAGTGATCAATCCCTACCACCAAGTGGTGTTGGGGATGAATTaGAAGGATGAGAAGCCGTGG +
Preference number: 5 (lower is better)
Translates to: RPEAQKIAAAVINPYHQVVLGMN*KDEKPW
Trigger: CCACGGCTTCTCATCCTTCAAATTCATCCCCAACAC...CACTTGGTGGTAGGGATTGATCACTGCTGCAGCTATCTTCTGAGCCTCTGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CAA 90 bp TTCACTTTCCAGGGGTCTGCAGCATATGGAATGCCAGAGTCACATGGGAGAAAGTTCACAGTGCCGATCTaGGTCTCTGGAAGCAGGAAG +
Preference number: 5 (lower is better)
Translates to: FTFQGSAAYGMPESHGRKFTVPI*VSGSRK
Trigger: CTTCCTGCTTCCAGAGACCAAGATCGGCACTGTGAA...CTTTCTCCCATGTGACTCTGGCATTCCATATGCTGCAGACCCCTGGAAAGTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS-3UTR CAA 90 bp CAGCCCTTGGAAGTTGCAGAGGCCAGGGATGCTGAGACTCTTTCTGTAAAAGCTGCAAGCCATTCAGCTTaGAAACCCTTCTCCACAGTT +
Preference number: 5 (lower is better)
Translates to: QPLEVAEARDAETLSVKAASHSA*KPFSTV
Trigger: AACTGTGGAGAAGGGTTTCAAAGCTGAATGGCTTGC...AGCTTTTACAGAAAGAGTCTCAGCATCCCTGGCCTCTGCAACTTCCAAGGGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106288.8
CDS TCA 90 bp CGCCCACATACAGGTGTTCGTCCTTCACAGCAAGCCATTCAGCTTTaGAACCTGCTACACATGAAGCTAATATCAGATTCTGTTCCCAGG +
Preference number: 5 (lower is better)
Translates to: RPHTGVRPSQQAIQL*NLLHMKLISDSVPR
Trigger: CCTGGGAACAGAATCTGATATTAGCTTCATGTGTAGCAGGTTTCAAAGCTGAATGGCTTGCTGTGAAGGACGAACACCTGTATGTGGGCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106289.9
CDS TCA 72 bp GCTGCAGTGTGTCGCTCCAGCAGGCGGACTCGTGAATaGGGTAGCCTGGTGGTCGGATCCCGGCGGCTGCTC +
Preference number: 6 (lower is better)
Translates to: AAVCRSSRRTRE*GSLVVGSRRLL
Trigger: GAGCAGCCGCCGGGATCCGACCACCAGGCTACCTCATTCACGAGTCCGCCTGCTGGAGCGACACACTGCAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000106289.9
ENSMUST00000164927.2
CDS TCA 72 bp ACTCTAGGACCCCGTGGTCTTTATCCCACTCCACGCTaGCCCTGTCCCCGCTGTCCGACAGGGTCAGGTAGC +
Preference number: 6 (lower is better)
Translates to: TLGPRGLYPTPR*PCPRCPTGSGS
Trigger: GCTACCTGACCCTGTCGGACAGCGGGGACAGGGTCAGCGTGGAGTGGGATAAAGACCACGGGGTCCTAGAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000106289.9
ENSMUST00000164927.2
CDS CCA 72 bp GTCCCCACTTGCCTCACAGAGATGTCCCTGAAGTCCTaGGCTGCGCTCAGCAGGAGGTTGCTGCCCTTGCGT +
Preference number: 6 (lower is better)
Translates to: VPTCLTEMSLKS*AALSRRLLPLR
Trigger: ACGCAAGGGCAGCAACCTCCTGCTGAGCGCAGCCCAGGACTTCAGGGACATCTCTGTGAGGCAAGTGGGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000106289.9
ENSMUST00000164927.2
CDS GCA 72 bp CGTTCATCACCTCCCCTGTCGTGGTGGTCCACTCCTTaGCCAGGCCGCCCACATACAGGTGTTCGTCCTTCA +
Preference number: 6 (lower is better)
Translates to: RSSPPLSWWSTP*PGRPHTGVRPS
Trigger: TGAAGGACGAACACCTGTATGTGGGCGGCCTGGGCAAGGAGTGGACCACCACGACAGGGGAGGTGATGAACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000106289.9
ENSMUST00000164927.2
CDS GCA 72 bp GATGAGAAGCCGTGGGTGGGGATCAGAGTCCCCACTTaGCTCACAGAGATGTCCCTGAAGTCCTGGGCTGCG +
Preference number: 6 (lower is better)
Translates to: DEKPWVGIRVPT*LTEMSLKSWAA
Trigger: CGCAGCCCAGGACTTCAGGGACATCTCTGTGAGGCAAGTGGGGACTCTGATCCCCACCCACGGCTTCTCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000106289.9
ENSMUST00000164927.2
CDS CAA 72 bp TCGTTCATCACCTCCCCTGTCGTGGTGGTCCACTCCTaGCCCAGGCCGCCCACATACAGGTGTTCGTCCTTC +
Preference number: 6 (lower is better)
Translates to: SFITSPVVVVHS*PRPPTYRCSSF
Trigger: GAAGGACGAACACCTGTATGTGGGCGGCCTGGGCAAGGAGTGGACCACCACGACAGGGGAGGTGATGAACGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000106289.9
ENSMUST00000164927.2
CDS CAA 90 bp TCAGGGTTCTCGTTCATCACCTCCCCTGTCGTGGTGGTCCACTCCTaGCCCAGGCCGCCCACATACAGGTGTTCGTCCTTCACAGCAAGC +
Preference number: 6 (lower is better)
Translates to: SGFSFITSPVVVVHS*PRPPTYRCSSFTAS
Trigger: GCTTGCTGTGAAGGACGAACACCTGTATGTGGGCGGCCTGGGCAAGGAGTGGACCACCACGACAGGGGAGGTGATGAACGAGAACCCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000106289.9
ENSMUST00000164927.2
CDS GCA 72 bp CACTTGCCTCACAGAGATGTCCCTGAAGTCCTGGGCTaGGCTCAGCAGGAGGTTGCTGCCCTTGCGTTCATC +
Preference number: 6 (lower is better)
Translates to: HLPHRDVPEVLG*AQQEVAALAFI
Trigger: GATGAACGCAAGGGCAGCAACCTCCTGCTGAGCGCAGCCCAGGACTTCAGGGACATCTCTGTGAGGCAAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000106289.9
ENSMUST00000164927.2
CDS TCA 72 bp CCCAGGGCACTGCTTTGGTGCCTTCGATCTGGTAGATaGCCCCTGTGCGGTCATCCACGGAGTAGAGTTTCC +
Preference number: 6 (lower is better)
Translates to: PRALLWCLRSGR*PLCGHPRSRVS
Trigger: GGAAACTCTACTCCGTGGATGACCGCACAGGGGTCATCTACCAGATCGAAGGCACCAAAGCAGTGCCCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000106289.9
ENSMUST00000164927.2
CDS CCA 72 bp TATTCCTTCGTACTTCACAGTGCCGATCTTGGTCTCTaGAAGCAGGAAGCGGCCGTCCAGCGTGAAGGCCAT +
Preference number: 6 (lower is better)
Translates to: YSFVLHSADLGL*KQEAAVQREGH
Trigger: ATGGCCTTCACGCTGGACGGCCGCTTCCTGCTTCCAGAGACCAAGATCGGCACTGTGAAGTACGAAGGAATA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000106289.9
ENSMUST00000164927.2
CDS GCA 72 bp AGTTCCATCGCCATCAGAAAGGATCACCCAGGGCACTaGTTTGGTGCCTTCGATCTGGTAGATGACCCCTGT +
Preference number: 6 (lower is better)
Translates to: SSIAIRKDHPGH*FGAFDLVDDPC
Trigger: ACAGGGGTCATCTACCAGATCGAAGGCACCAAAGCAGTGCCCTGGGTGATCCTTTCTGATGGCGATGGAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000106289.9
ENSMUST00000164927.2
CDS CAA 90 bp CCGCCCACATACAGGTGTTCGTCCTTCACAGCAAGCCATTCAGCTTaGAAACCCTTCTCCACAGTTCCATCGCCATCAGAAAGGATCACC +
Preference number: 6 (lower is better)
Translates to: PPTYRCSSFTASHSA*KPFSTVPSPSERIT
Trigger: GGTGATCCTTTCTGATGGCGATGGAACTGTGGAGAAGGGTTTCAAAGCTGAATGGCTTGCTGTGAAGGACGAACACCTGTATGTGGGCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000164927.2
CDS CAA 90 bp TTGTCCTCTTCCGACTTGAGAGCCACGATGATCTGGTCATCCGTGTaGGGGATGAATTTGAAGGATGAGAAGCCGTGGGTGGGGATCAGA +
Preference number: 6 (lower is better)
Translates to: LSSSDLRATMIWSSV*GMNLKDEKPWVGIR
Trigger: TCTGATCCCCACCCACGGCTTCTCATCCTTCAAATTCATCCCCAACACGGATGACCAGATCATCGTGGCTCTCAAGTCGGAAGAGGACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000106289.9
ENSMUST00000164927.2
CDS TCA 72 bp ACAGGTGTTCGTCCTTCACAGCAAGCCATTCAGCTTTaGAACCCTTCTCCACAGTTCCATCGCCATCAGAAA +
Preference number: 6 (lower is better)
Translates to: TGVRPSQQAIQL*NPSPQFHRHQK
Trigger: TTTCTGATGGCGATGGAACTGTGGAGAAGGGTTTCAAAGCTGAATGGCTTGCTGTGAAGGACGAACACCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000164927.2
CDS GCA 72 bp AAGCTAATATCAGATTCTGTTCCCAGGAGTCATTGCTaGTCAGCATACAGACCCTTGTACTGGGTGGGCTCA +
Preference number: 6 (lower is better)
Translates to: KLISDSVPRSHC*SAYRPLYWVGS
Trigger: TGAGCCCACCCAGTACAAGGGTCTGTATGCTGAGCAGCAATGACTCCTGGGAACAGAATCTGATATTAGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106289.9
CDS CAA 72 bp TACAGGTGTTCGTCCTTCACAGCAAGCCATTCAGCTTaGAAACCCTTCTCCACAGTTCCATCGCCATCAGAA +
Preference number: 6 (lower is better)
Translates to: YRCSSFTASHSA*KPFSTVPSPSE
Trigger: TTCTGATGGCGATGGAACTGTGGAGAAGGGTTTCAAAGCTGAATGGCTTGCTGTGAAGGACGAACACCTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000017620.10
ENSMUST00000092378.10
ENSMUST00000106287.8
ENSMUST00000106288.8
ENSMUST00000164927.2
CDS CAA 90 bp CCGCCCACATACAGGTGTTCGTCCTTCACAGCAAGCCATTCAGCTTaGAAACCTGCTACACATGAAGCTAATATCAGATTCTGTTCCCAG +
Preference number: 6 (lower is better)
Translates to: PPTYRCSSFTASHSA*KPATHEANIRFCSQ
Trigger: CTGGGAACAGAATCTGATATTAGCTTCATGTGTAGCAGGTTTCAAAGCTGAATGGCTTGCTGTGAAGGACGAACACCTGTATGTGGGCGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106289.9
CDS TCA 72 bp ACAGGTGTTCGTCCTTCACAGCAAGCCATTCAGCTTTaGAACCTGCTACACATGAAGCTAATATCAGATTCT +
Preference number: 6 (lower is better)
Translates to: TGVRPSQQAIQL*NLLHMKLISDS
Trigger: AGAATCTGATATTAGCTTCATGTGTAGCAGGTTTCAAAGCTGAATGGCTTGCTGTGAAGGACGAACACCTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106289.9
CDS CAA 72 bp TACAGGTGTTCGTCCTTCACAGCAAGCCATTCAGCTTaGAAACCTGCTACACATGAAGCTAATATCAGATTC +
Preference number: 6 (lower is better)
Translates to: YRCSSFTASHSA*KPATHEANIRF
Trigger: GAATCTGATATTAGCTTCATGTGTAGCAGGTTTCAAAGCTGAATGGCTTGCTGTGAAGGACGAACACCTGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106289.9