Pregenerated sensors for CAMP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038357Ensembl transcript IDs: ENSMUST00000112022.5
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TTCTTTTACCAAGTTTATTATTTTAGGAATCCAGAAACAGGCCAAGGCAGGCCTCGGCCGGGTTCAGGGTaGCTGCCCCCATACACTGCT | + |
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Preference number: 4 (lower is better) Translates to: FFYQVYYFRNPETGQGRPRPGSG*LPPYTA Trigger: AGCAGTGTATGGGGGCAGTCACCCTGAACCCGGCCG...AGGCCTGCCTTGGCCTGTTTCTGGATTCCTAAAATAATAAACTTGGTAAAAGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS-3UTR CCA 90 bp | TTCTTTTACCAAGTTTATTATTTTAGGAATCCAGAAACAGGCCAAGGCAGGCCTCAGCATCCCTGTAGCTaGGGGTCTGGGAGAACCCCA | + |
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Preference number: 4 (lower is better) Translates to: FFYQVYYFRNPETGQGRPQHPCS*GSGRTP Trigger: TGGGGTTCTCCCAGACCCCCAGCTACAGGGATGCTG...AGGCCTGCCTTGGCCTGTTTCTGGATTCCTAAAATAATAAACTTGGTAAAAGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS-3UTR GCA 90 bp | TCTTTTACCAAGTTTATTATTTTAGGAATCCAGAAACAGGCCAAGGCAGGCCTAACTGCCCCCATACACTaGTTCACCACCCCCTGTTCC | + |
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Preference number: 4 (lower is better) Translates to: SFTKFIILGIQKQAKAGLTAPIH*FTTPCS Trigger: GGAACAGGGGGTGGTGAAGCAGTGTATGGGGGCAGT...TAGGCCTGCCTTGGCCTGTTTCTGGATTCCTAAAATAATAAACTTGGTAAAAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS-3UTR GCA 90 bp | TCTTTTACCAAGTTTATTATTTTAGGAATCCAGAAACAGGCCAAGGCAGGCCTATCTTCTCCCCACCTTTaGGGAGAAGTCCAGCCAGCC | + |
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Preference number: 4 (lower is better) Translates to: SFTKFIILGIQKQAKAGLSSPHL*GEVQPA Trigger: GGCTGGCTGGACTTCTCCGCAAAGGTGGGGAGAAGA...TAGGCCTGCCTTGGCCTGTTTCTGGATTCCTAAAATAATAAACTTGGTAAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS-3UTR TCA 90 bp | TTCTTTTACCAAGTTTATTATTTTAGGAATCCAGAAACAGGCCAAGGCAGGCCTCCACCCCCTGTTCCTTaGAGGCACATTGCTCAGGTA | + |
|
Preference number: 4 (lower is better) Translates to: FFYQVYYFRNPETGQGRPPPPVP*RHIAQV Trigger: TACCTGAGCAATGTGCCTTCAAGGAACAGGGGGTGG...AGGCCTGCCTTGGCCTGTTTCTGGATTCCTAAAATAATAAACTTGGTAAAAGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS-3UTR GCA 90 bp | TTCTTTTACCAAGTTTATTATTTTAGGAATCCAGAAACAGGCCAAGGCAGGCCTGCTGCCGCTCTGCCTTaGCACATACAGTCTCCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: FFYQVYYFRNPETGQGRPAAALP*HIQSPS Trigger: TGAAGGAGACTGTATGTGGCAAGGCAGAGCGGCAGC...AGGCCTGCCTTGGCCTGTTTCTGGATTCCTAAAATAATAAACTTGGTAAAAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS-3UTR GCA 90 bp | TTCTTTTACCAAGTTTATTATTTTAGGAATCCAGAAACAGGCCAAGGCAGGCCTCATTGCTCAGGTAGCTaGCGCTCTGCCTTGCCACAT | + |
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Preference number: 4 (lower is better) Translates to: FFYQVYYFRNPETGQGRPHCSGS*RSALPH Trigger: ATGTGGCAAGGCAGAGCGGCAGCTACCTGAGCAATG...AGGCCTGCCTTGGCCTGTTTCTGGATTCCTAAAATAATAAACTTGGTAAAAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS TCA 90 bp | CCAGGTCCAGGAGACGGTAGAGATTGGTGTCTAGGGACTGCTGGTTaGAGTCATCCACAGCTCGGAGCACAGCATCCCTGTAGCTGGGGG | + |
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Preference number: 5 (lower is better) Translates to: PGPGDGRDWCLGTAG*SHPQLGAQHPCSWG Trigger: CCCCCAGCTACAGGGATGCTGTGCTCCGAGCTGTGGATGACTTCAACCAGCAGTCCCTAGACACCAATCTCTACCGTCTCCTGGACCTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS CCA 90 bp | CTGCCTTGCCACATACAGTCTCCTTCACTCGGAACCTCACAGACTTaGGAGTATCTGGATCCTCGTCCCCTTGGGGCTCAGGATCCAGGT | + |
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Preference number: 5 (lower is better) Translates to: LPCHIQSPSLGTSQT*EYLDPRPLGAQDPG Trigger: ACCTGGATCCTGAGCCCCAAGGGGACGAGGATCCAGATACTCCCAAGTCTGTGAGGTTCCGAGTGAAGGAGACTGTATGTGGCAAGGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS-3UTR CAA 90 bp | TCTTTTACCAAGTTTATTATTTTAGGAATCCAGAAACAGGCCAAGGCAGGCCTATGGATCCTCGTCCCCTaGGGGCTCAGGATCCAGGTC | + |
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Preference number: 5 (lower is better) Translates to: SFTKFIILGIQKQAKAGLWILVP*GLRIQV Trigger: GACCTGGATCCTGAGCCCCAAGGGGACGAGGATCCA...TAGGCCTGCCTTGGCCTGTTTCTGGATTCCTAAAATAATAAACTTGGTAAAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS-3UTR CAA 90 bp | TCTTTTACCAAGTTTATTATTTTAGGAATCCAGAAACAGGCCAAGGCAGGCCTAACCACCCCCTGTTCCTaGAAGGCACATTGCTCAGGT | + |
|
Preference number: 5 (lower is better) Translates to: SFTKFIILGIQKQAKAGLTTPCS*KAHCSG Trigger: ACCTGAGCAATGTGCCTTCAAGGAACAGGGGGTGGT...TAGGCCTGCCTTGGCCTGTTTCTGGATTCCTAAAATAATAAACTTGGTAAAAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS-3UTR CAA 90 bp | TCTTTTACCAAGTTTATTATTTTAGGAATCCAGAAACAGGCCAAGGCAGGCCTAAGCCGGGAAATTTTCTaGAACCGAAAGGGCTGTGCA | + |
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Preference number: 5 (lower is better) Translates to: SFTKFIILGIQKQAKAGLSREIF*NRKGCA Trigger: TGCACAGCCCTTTCGGTTCAAGAAAATTTCCCGGCT...TAGGCCTGCCTTGGCCTGTTTCTGGATTCCTAAAATAATAAACTTGGTAAAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS CCA 72 bp | AGTCATCCACAGCTCGGAGCACAGCATCCCTGTAGCTaGGGGTCTGGGAGAACCCCAGGCCCAGTAGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: SHPQLGAQHPCS*GSGRTPGPVAA Trigger: TGCTGCTACTGGGCCTGGGGTTCTCCCAGACCCCCAGCTACAGGGATGCTGTGCTCCGAGCTGTGGATGACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS TCA 72 bp | CTGCCCCCATACACTGCTTCACCACCCCCTGTTCCTTaGAGGCACATTGCTCAGGTAGCTGCCGCTCTGCCT | + |
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Preference number: 6 (lower is better) Translates to: LPPYTASPPPVP*RHIAQVAAALP Trigger: AGGCAGAGCGGCAGCTACCTGAGCAATGTGCCTTCAAGGAACAGGGGGTGGTGAAGCAGTGTATGGGGGCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS CAA 72 bp | CCTCACAGACTTGGGAGTATCTGGATCCTCGTCCCCTaGGGGCTCAGGATCCAGGTCCAGGAGACGGTAGAG | + |
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Preference number: 6 (lower is better) Translates to: PHRLGSIWILVP*GLRIQVQETVE Trigger: CTCTACCGTCTCCTGGACCTGGATCCTGAGCCCCAAGGGGACGAGGATCCAGATACTCCCAAGTCTGTGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS CAA 72 bp | ACTGCCCCCATACACTGCTTCACCACCCCCTGTTCCTaGAAGGCACATTGCTCAGGTAGCTGCCGCTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: TAPIHCFTTPCS*KAHCSGSCRSA Trigger: GGCAGAGCGGCAGCTACCTGAGCAATGTGCCTTCAAGGAACAGGGGGTGGTGAAGCAGTGTATGGGGGCAGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS CAA 90 bp | CACTCGGAACCTCACAGACTTGGGAGTATCTGGATCCTCGTCCCCTaGGGGCTCAGGATCCAGGTCCAGGAGACGGTAGAGATTGGTGTC | + |
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Preference number: 6 (lower is better) Translates to: HSEPHRLGSIWILVP*GLRIQVQETVEIGV Trigger: GACACCAATCTCTACCGTCTCCTGGACCTGGATCCTGAGCCCCAAGGGGACGAGGATCCAGATACTCCCAAGTCTGTGAGGTTCCGAGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS CCA 72 bp | CTCCTTCACTCGGAACCTCACAGACTTGGGAGTATCTaGATCCTCGTCCCCTTGGGGCTCAGGATCCAGGTC | + |
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Preference number: 6 (lower is better) Translates to: LLHSEPHRLGSI*ILVPLGLRIQV Trigger: GACCTGGATCCTGAGCCCCAAGGGGACGAGGATCCAGATACTCCCAAGTCTGTGAGGTTCCGAGTGAAGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS CAA 90 bp | TCTGCCTTGCCACATACAGTCTCCTTCACTCGGAACCTCACAGACTaGGGAGTATCTGGATCCTCGTCCCCTTGGGGCTCAGGATCCAGG | + |
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Preference number: 6 (lower is better) Translates to: SALPHTVSFTRNLTD*GVSGSSSPWGSGSR Trigger: CCTGGATCCTGAGCCCCAAGGGGACGAGGATCCAGATACTCCCAAGTCTGTGAGGTTCCGAGTGAAGGAGACTGTATGTGGCAAGGCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS GCA 72 bp | CACTGCTTCACCACCCCCTGTTCCTTGAAGGCACATTaGTCAGGTAGCTGCCGCTCTGCCTTGCCACATACA | + |
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Preference number: 6 (lower is better) Translates to: HCFTTPCSLKAH*SGSCRSALPHT Trigger: TGTATGTGGCAAGGCAGAGCGGCAGCTACCTGAGCAATGTGCCTTCAAGGAACAGGGGGTGGTGAAGCAGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS GCA 72 bp | ACCCCCTGTTCCTTGAAGGCACATTGCTCAGGTAGCTaGCGCTCTGCCTTGCCACATACAGTCTCCTTCACT | + |
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Preference number: 6 (lower is better) Translates to: TPCSLKAHCSGS*RSALPHTVSFT Trigger: AGTGAAGGAGACTGTATGTGGCAAGGCAGAGCGGCAGCTACCTGAGCAATGTGCCTTCAAGGAACAGGGGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS CCA 72 bp | CACATACAGTCTCCTTCACTCGGAACCTCACAGACTTaGGAGTATCTGGATCCTCGTCCCCTTGGGGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: HIQSPSLGTSQT*EYLDPRPLGAQ Trigger: CTGAGCCCCAAGGGGACGAGGATCCAGATACTCCCAAGTCTGTGAGGTTCCGAGTGAAGGAGACTGTATGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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| CDS CAA 72 bp | CCACATACAGTCTCCTTCACTCGGAACCTCACAGACTaGGGAGTATCTGGATCCTCGTCCCCTTGGGGCTCA | + |
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Preference number: 6 (lower is better) Translates to: PHTVSFTRNLTD*GVSGSSSPWGS Trigger: TGAGCCCCAAGGGGACGAGGATCCAGATACTCCCAAGTCTGTGAGGTTCCGAGTGAAGGAGACTGTATGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112022.5 |
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