RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CAMKV (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032936

Ensembl transcript IDs: ENSMUST00000035700.14, ENSMUST00000193533.6, ENSMUST00000194206.2, ENSMUST00000195219.2

Found 244 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CACACCTTCCCGTGCAGGAGCCTAACACTGCTGACAGGGCCTCGCTaGAGGACCAGCTCTCAGGGCAAGGCCACCCATTTAGGGCCTGGG +
Preference number: 1 (lower is better)
Translates to: HTFPCRSLTLLTGPR*RTSSQGKATHLGPG
Trigger: CCCAGGCCCTAAATGGGTGGCCTTGCCCTGAGAGCTGGTCCTCCAGCGAGGCCCTGTCAGCAGTGTTAGGCTCCTGCACGGGAAGGTGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR GCA 90 bp CACACTCCTAGAGCAGCCCAAACACCACAGGTACACACCTTCCCGTaGAGGAGCCTAACACTGCTGACAGGGCCTCGCTGGAGGACCAGC +
Preference number: 1 (lower is better)
Translates to: HTPRAAQTPQVHTFP*RSLTLLTGPRWRTS
Trigger: GCTGGTCCTCCAGCGAGGCCCTGTCAGCAGTGTTAGGCTCCTGCACGGGAAGGTGTGTACCTGTGGTGTTTGGGCTGCTCTAGGAGTGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR CCA 90 bp ACACCAGCCCTCCCTATCCAGCTCACAGGAAGGAGCCAGATAGGCTaGGGCACTGTACTCTGTTCTCCTAGGCGTCGCTGCTGTGTCCGA +
Preference number: 1 (lower is better)
Translates to: TPALPIQLTGRSQIG*GTVLCSPRRRCCVR
Trigger: TCGGACACAGCAGCGACGCCTAGGAGAACAGAGTACAGTGCCCCAGCCTATCTGGCTCCTTCCTGTGAGCTGGATAGGGAGGGCTGGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR TCA 90 bp CCACAGCTAACATGCAATGCCTGCTCCCTACCACGTGACCAGACTTaGCTTAAAGCACACTGCCCTAGGTTTTCTGCATCCTCTCTTGCA +
Preference number: 1 (lower is better)
Translates to: PQLTCNACSLPRDQT*LKAHCPRFSASSLA
Trigger: TGCAAGAGAGGATGCAGAAAACCTAGGGCAGTGTGCTTTAAGTCAAGTCTGGTCACGTGGTAGGGAGCAGGCATTGCATGTTAGCTGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR TCA 90 bp AAGAATCGGGATACAGAGCAACCCGCTACAGGACTCAGGAGGCTATaGAATAACACAAGGATCTTCAAGAGGGAAGATCGCCACCCCCAC +
Preference number: 1 (lower is better)
Translates to: KNRDTEQPATGLRRL*NNTRIFKREDRHPH
Trigger: GTGGGGGTGGCGATCTTCCCTCTTGAAGATCCTTGTGTTATTTCATAGCCTCCTGAGTCCTGTAGCGGGTTGCTCTGTATCCCGATTCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR TCA 90 bp ACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACATGGCTaGGCAATACCTCAGCCTCTGATGGTAGACAAAGAGGAAAAGCCT +
Preference number: 1 (lower is better)
Translates to: TVVYFLIPARATSHG*AIPQPLMVDKEEKP
Trigger: AGGCTTTTCCTCTTTGTCTACCATCAGAGGCTGAGGTATTGCTCAGCCATGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR GCA 90 bp CCAGCGTGGCTGCCTGTTCAGGCTGTGGTAGGGTCTGACCAAGGGCACCTGCTGGCCACAAGGAATCCATaGAGGGGCTGGGGCTGGCCC +
Preference number: 2 (lower is better)
Translates to: PAWLPVQAVVGSDQGHLLATRNP*RGWGWP
Trigger: GGGCCAGCCCCAGCCCCTGCATGGATTCCTTGTGGC...CAGCAGGTGCCCTTGGTCAGACCCTACCACAGCCTGAACAGGCAGCCACGCTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR CCA 90 bp CCAGCGTGGCTGCCTGTTCAGGCTGTGGTAGGGTCTGACCAAGGGCACCTGCTGCTGACAGGGCCTCGCTaGAGGACCAGCTCTCAGGGC +
Preference number: 2 (lower is better)
Translates to: PAWLPVQAVVGSDQGHLLLTGPR*RTSSQG
Trigger: GCCCTGAGAGCTGGTCCTCCAGCGAGGCCCTGTCAG...CAGCAGGTGCCCTTGGTCAGACCCTACCACAGCCTGAACAGGCAGCCACGCTGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR GCA 90 bp GACCACCATGGAGTGCCGAGCAAGGGCAAGGACCAGCGTGGCTGCCTGTTCAGGACGCAGCCTATGAGGTaGTGCCACGCCTCCCTGGGA +
Preference number: 2 (lower is better)
Translates to: DHHGVPSKGKDQRGCLFRTQPMR*CHASLG
Trigger: TCCCAGGGAGGCGTGGCAGCACCTCATAGGCTGCGT...CCTGAACAGGCAGCCACGCTGGTCCTTGCCCTTGCTCGGCACTCCATGGTGGTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR CCA 90 bp GACCACCATGGAGTGCCGAGCAAGGGCAAGGACCAGCGTGGCTGCCTGTTCAGGAAGACTGCTCTCCCATaGCCCCCAGGCATGCCCCAC +
Preference number: 2 (lower is better)
Translates to: DHHGVPSKGKDQRGCLFRKTALP*PPGMPH
Trigger: GTGGGGCATGCCTGGGGGCCATGGGAGAGCAGTCTT...CCTGAACAGGCAGCCACGCTGGTCCTTGCCCTTGCTCGGCACTCCATGGTGGTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR GCA 90 bp GCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCGCCACAAGGAATCCATaGAGGGGCTGGGGCTGGCCC +
Preference number: 2 (lower is better)
Translates to: ASLRELGNCSLLPHPSQSATRNP*RGWGWP
Trigger: GGGCCAGCCCCAGCCCCTGCATGGATTCCTTGTGGC...GCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR CCA 90 bp CTGCTGAGAGCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCGGCTGGCCCTGCCTCTaGCCTGCCCGCCACTCACAT +
Preference number: 2 (lower is better)
Translates to: LLRASLRELGNCSLLPHPGWPCL*PARHSH
Trigger: ATGTGAGTGGCGGGCAGGCCAGAGGCAGGGCCAGCC...GGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGCTCTCAGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR GCA 90 bp CTGCTGAGAGCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCCATGGCCCCCAGGCATaGCCCACTGGGATGAGGGAG +
Preference number: 2 (lower is better)
Translates to: LLRASLRELGNCSLLPHPHGPQA*PTGMRE
Trigger: CTCCCTCATCCCAGTGGGGCATGCCTGGGGGCCATG...GGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGCTCTCAGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR CCA 90 bp CGCTGCACTAAGAGCAGAAAATCTGCTGCTGTGAAAAGCATGCTCCCAACGCAGGGCTGGCCCTGCCTCTaGCCTGCCCGCCACTCACAT +
Preference number: 2 (lower is better)
Translates to: RCTKSRKSAAVKSMLPTQGWPCL*PARHSH
Trigger: ATGTGAGTGGCGGGCAGGCCAGAGGCAGGGCCAGCC...CTGCGTTGGGAGCATGCTTTTCACAGCAGCAGATTTTCTGCTCTTAGTGCAGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR TCA 90 bp ACCATGGAGTGCCGAGCAAGGGCAAGGACCAGCGTGGCTGCCTGTTCAGGCTGTGAAAATCTGCTGCTGTaGAAAGCATGCTCCCAACGC +
Preference number: 2 (lower is better)
Translates to: TMECRARARTSVAACSGCENLLL*KACSQR
Trigger: GCGTTGGGAGCATGCTTTTCACAGCAGCAGATTTTC...ACAGCCTGAACAGGCAGCCACGCTGGTCCTTGCCCTTGCTCGGCACTCCATGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR CCA 90 bp CGCTGCACTAAGAGCAGAAAATCTGCTGCTGTGAAAAGCATGCTCCCAACGCAGCTGACAGGGCCTCGCTaGAGGACCAGCTCTCAGGGC +
Preference number: 2 (lower is better)
Translates to: RCTKSRKSAAVKSMLPTQLTGPR*RTSSQG
Trigger: GCCCTGAGAGCTGGTCCTCCAGCGAGGCCCTGTCAG...CTGCGTTGGGAGCATGCTTTTCACAGCAGCAGATTTTCTGCTCTTAGTGCAGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR TCA 90 bp CTGCTGAGAGCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGAGCAAGGACCCCCTaGGTATCCCTAGAGCAGCAT +
Preference number: 2 (lower is better)
Translates to: LLRASLRELGNCSLLPHPRARTP*VSLEQH
Trigger: ATGCTGCTCTAGGGATACTCAGGGGGTCCTTGCTCT...GGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGCTCTCAGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR CCA 90 bp TACCCATTCTCTCTCCCACTTCTGAGGATCCCCACAGCTAACATGCAATGCCTGAAGACTGCTCTCCCATaGCCCCCAGGCATGCCCCAC +
Preference number: 2 (lower is better)
Translates to: YPFSLPLLRIPTANMQCLKTALP*PPGMPH
Trigger: GTGGGGCATGCCTGGGGGCCATGGGAGAGCAGTCTT...CAGGCATTGCATGTTAGCTGTGGGGATCCTCAGAAGTGGGAGAGAGAATGGGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR CAA 90 bp AACACCTCCCTCCCCGTGGCCAGCTCCAGAAAGATGAAGTATTCCTaGCGGGTCACAAACACATCTACCAGCTGCAGGATGTTGGGGTGC +
Preference number: 2 (lower is better)
Translates to: NTSLPVASSRKMKYS*RVTNTSTSCRMLGC
Trigger: GCACCCCAACATCCTGCAGCTGGTAGATGTGTTTGTGACCCGCAAGGAATACTTCATCTTTCTGGAGCTGGCCACGGGGAGGGAGGTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000193533.6
3UTR-3UTR CCA 90 bp TTGCCAGGTTCAGTAGGCACACAGTTAGCCCACCAACCTTCACATACCAGAGCAAGGGCAGGACCACCATaGAGTGCCGAGCAAGGGCAA +
Preference number: 2 (lower is better)
Translates to: LPGSVGTQLAHQPSHTRARAGPP*SAEQGQ
Trigger: TTGCCCTTGCTCGGCACTCCATGGTGGTCCTGCCCT...TGCTCTGGTATGTGAAGGTTGGTGGGCTAACTGTGTGCCTACTGAACCTGGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR TCA 90 bp AGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACAAGAGCAAGGACCCCCTaGGTATCCCTAGAGCAGCAT +
Preference number: 2 (lower is better)
Translates to: RELGNCSLLPHPSQSYFTRARTP*VSLEQH
Trigger: ATGCTGCTCTAGGGATACTCAGGGGGTCCTTGCTCT...TGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR GCA 90 bp TTGCCAGGTTCAGTAGGCACACAGTTAGCCCACCAACCTTCACATACCAGAGCATCCCCACAGCTAACATaGAATGCCTGCTCCCTACCA +
Preference number: 2 (lower is better)
Translates to: LPGSVGTQLAHQPSHTRASPQLT*NACSLP
Trigger: TGGTAGGGAGCAGGCATTGCATGTTAGCTGTGGGGA...TGCTCTGGTATGTGAAGGTTGGTGGGCTAACTGTGTGCCTACTGAACCTGGCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR GCA 90 bp CGCTGCACTAAGAGCAGAAAATCTGCTGCTGTGAAAAGCATGCTCCCAACGCAGTCCCCACAGCTAACATaGAATGCCTGCTCCCTACCA +
Preference number: 2 (lower is better)
Translates to: RCTKSRKSAAVKSMLPTQSPQLT*NACSLP
Trigger: TGGTAGGGAGCAGGCATTGCATGTTAGCTGTGGGGA...CTGCGTTGGGAGCATGCTTTTCACAGCAGCAGATTTTCTGCTCTTAGTGCAGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR GCA 90 bp AGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACATGGCGAGCAGAAAATCTGCTaGTGTGAAAAGCATGCTCCC +
Preference number: 2 (lower is better)
Translates to: SWGTVVYFLIPARATSHGEQKIC*CEKHAP
Trigger: GGGAGCATGCTTTTCACAGCAGCAGATTTTCTGCTC...GCCATGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR CAA 90 bp AGACTTGACTTAAAGCACACTGCCCTAGGTTTTCTGCATCCTCTCTaGCACACTCCTAGAGCAGCCCAAACACCACAGGTACACACCTTC +
Preference number: 2 (lower is better)
Translates to: RLDLKHTALGFLHPL*HTPRAAQTPQVHTF
Trigger: GAAGGTGTGTACCTGTGGTGTTTGGGCTGCTCTAGGAGTGTGCAAGAGAGGATGCAGAAAACCTAGGGCAGTGTGCTTTAAGTCAAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR TCA 90 bp AGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACAGGACTCAGGAGGCTATaGAATAACACAAGGATCTTC +
Preference number: 2 (lower is better)
Translates to: RELGNCSLLPHPSQSYFTGLRRL*NNTRIF
Trigger: GAAGATCCTTGTGTTATTTCATAGCCTCCTGAGTCC...TGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR CCA 90 bp CCAGAGGCTTTGCAGGGTGACGTTTATTTGCCAGGTTCAGTAGGCACACAGTTACACCCATTTAGGGCCTaGGAAAGGATGAGGTTTGCA +
Preference number: 2 (lower is better)
Translates to: PEALQGDVYLPGSVGTQLHPFRA*ERMRFA
Trigger: TGCAAACCTCATCCTTTCCCAGGCCCTAAATGGGTG...TAACTGTGTGCCTACTGAACCTGGCAAATAAACGTCACCCTGCAAAGCCTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035700.14
3UTR CCA 72 bp GACCAGCTCTCAGGGCAAGGCCACCCATTTAGGGCCTaGGAAAGGATGAGGTTTGCAGGGCCTGCCTGGGGG +
Preference number: 3 (lower is better)
Translates to: DQLSGQGHPFRA*ERMRFAGPAWG
Trigger: CCCCCAGGCAGGCCCTGCAAACCTCATCCTTTCCCAGGCCCTAAATGGGTGGCCTTGCCCTGAGAGCTGGTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR GCA 72 bp CCCGCCACTCACATACATCCACACAGGAGACAAGACTaGTCTCCCATGGCCCCCAGGCATGCCCCACTGGGA +
Preference number: 3 (lower is better)
Translates to: PATHIHPHRRQD*SPMAPRHAPLG
Trigger: TCCCAGTGGGGCATGCCTGGGGGCCATGGGAGAGCAGTCTTGTCTCCTGTGTGGATGTATGTGAGTGGCGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR GCA 72 bp AGTAGGCCACAGCCTCCAAGACCTGCCGCACCACGTTaGTCGTGTCTCGCTCCGAGTAGTAGCCCTGGTCCA +
Preference number: 3 (lower is better)
Translates to: SRPQPPRPAAPR*SCLAPSSSPGP
Trigger: TGGACCAGGGCTACTACTCGGAGCGAGACACGAGCAACGTGGTGCGGCAGGTCTTGGAGGCTGTGGCCTACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193533.6
3UTR CCA 72 bp CCGTGCAGGAGCCTAACACTGCTGACAGGGCCTCGCTaGAGGACCAGCTCTCAGGGCAAGGCCACCCATTTA +
Preference number: 3 (lower is better)
Translates to: PCRSLTLLTGPR*RTSSQGKATHL
Trigger: TAAATGGGTGGCCTTGCCCTGAGAGCTGGTCCTCCAGCGAGGCCCTGTCAGCAGTGTTAGGCTCCTGCACGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR GCA 72 bp AGAGCAGCCCAAACACCACAGGTACACACCTTCCCGTaGAGGAGCCTAACACTGCTGACAGGGCCTCGCTGG +
Preference number: 3 (lower is better)
Translates to: RAAQTPQVHTFP*RSLTLLTGPRW
Trigger: CCAGCGAGGCCCTGTCAGCAGTGTTAGGCTCCTGCACGGGAAGGTGTGTACCTGTGGTGTTTGGGCTGCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR CAA 90 bp CCAGCGTGGCTGCCTGTTCAGGCTGTGGTAGGGTCTGACCAAGGGCACCTGCTGTTTCTGCATCCTCTCTaGCACACTCCTAGAGCAGCC +
Preference number: 3 (lower is better)
Translates to: PAWLPVQAVVGSDQGHLLFLHPL*HTPRAA
Trigger: GGCTGCTCTAGGAGTGTGCAAGAGAGGATGCAGAAA...CAGCAGGTGCCCTTGGTCAGACCCTACCACAGCCTGAACAGGCAGCCACGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR CCA 72 bp ACATACATCCACACAGGAGACAAGACTGCTCTCCCATaGCCCCCAGGCATGCCCCACTGGGATGAGGGAGCT +
Preference number: 3 (lower is better)
Translates to: TYIHTGDKTALP*PPGMPHWDEGA
Trigger: AGCTCCCTCATCCCAGTGGGGCATGCCTGGGGGCCATGGGAGAGCAGTCTTGTCTCCTGTGTGGATGTATGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR CCA 72 bp CTCCCTATCCAGCTCACAGGAAGGAGCCAGATAGGCTaGGGCACTGTACTCTGTTCTCCTAGGCGTCGCTGC +
Preference number: 3 (lower is better)
Translates to: LPIQLTGRSQIG*GTVLCSPRRRC
Trigger: GCAGCGACGCCTAGGAGAACAGAGTACAGTGCCCCAGCCTATCTGGCTCCTTCCTGTGAGCTGGATAGGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR CAA 90 bp AGACCTGCCGCACCACGTTGCTCGTGTCTCGCTCCGAGTAGTAGCCCTGGTCCAAAGATGAAGTATTCCTaGCGGGTCACAAACACATCT +
Preference number: 3 (lower is better)
Translates to: RPAAPRCSCLAPSSSPGPKMKYS*RVTNTS
Trigger: AGATGTGTTTGTGACCCGCAAGGAATACTTCATCTT...TGGACCAGGGCTACTACTCGGAGCGAGACACGAGCAACGTGGTGCGGCAGGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193533.6
3UTR-3UTR CAA 90 bp AGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACATGGCTTTCTGCATCCTCTCTaGCACACTCCTAGAGCAGCC +
Preference number: 3 (lower is better)
Translates to: SWGTVVYFLIPARATSHGFLHPL*HTPRAA
Trigger: GGCTGCTCTAGGAGTGTGCAAGAGAGGATGCAGAAA...GCCATGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR-3UTR CAA 90 bp AGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACAGCAAAGGTCTCTTTCTaGGTAATGGCATCTAGGAAG +
Preference number: 3 (lower is better)
Translates to: RELGNCSLLPHPSQSYFTAKVSF*VMASRK
Trigger: CTTCCTAGATGCCATTACCAAGAAAGAGACCTTTGC...TGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR TCA 72 bp TACTTCCTCATCCCAGCCAGAGCTACTTCACATGGCTaGGCAATACCTCAGCCTCTGATGGTAGACAAAGAG +
Preference number: 3 (lower is better)
Translates to: YFLIPARATSHG*AIPQPLMVDKE
Trigger: CTCTTTGTCTACCATCAGAGGCTGAGGTATTGCTCAGCCATGTGAAGTAGCTCTGGCTGGGATGAGGAAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR CCA 72 bp AGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACATaGCTGAGCAATACCTCAGCCTCTGATGGTAGACAA +
Preference number: 3 (lower is better)
Translates to: SLLPHPSQSYFT*LSNTSASDGRQ
Trigger: TTGTCTACCATCAGAGGCTGAGGTATTGCTCAGCCATGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR TCA 72 bp GATACAGAGCAACCCGCTACAGGACTCAGGAGGCTATaGAATAACACAAGGATCTTCAAGAGGGAAGATCGC +
Preference number: 3 (lower is better)
Translates to: DTEQPATGLRRL*NNTRIFKREDR
Trigger: GCGATCTTCCCTCTTGAAGATCCTTGTGTTATTTCATAGCCTCCTGAGTCCTGTAGCGGGTTGCTCTGTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR TCA 90 bp ATCCACACAGGAGACAAGACTGCTCTCCCATGGCCCCCAGGCATGCCCCACTGGACTGGCCCCAGAGGCTaGGGCAGCTCCACCTGCAGC +
Preference number: 4 (lower is better)
Translates to: IHTGDKTALPWPPGMPHWTGPRG*GSSTCS
Trigger: GCTGCAGGTGGAGCTGCCTCAGCCTCTGGGGCCAGT...CCAGTGGGGCATGCCTGGGGGCCATGGGAGAGCAGTCTTGTCTCCTGTGTGGAT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR TCA 90 bp CCAGCGTGGCTGCCTGTTCAGGCTGTGGTAGGGTCTGACCAAGGGCACCTGCTGCCCGGAGCCGCTTCATaGGAGTGGTCACTCGGACAG +
Preference number: 4 (lower is better)
Translates to: PAWLPVQAVVGSDQGHLLPGAAS*EWSLGQ
Trigger: CTGTCCGAGTGACCACTCTCATGAAGCGGCTCCGGG...CAGCAGGTGCCCTTGGTCAGACCCTACCACAGCCTGAACAGGCAGCCACGCTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR TCA 90 bp ACCATGGAGTGCCGAGCAAGGGCAAGGACCAGCGTGGCTGCCTGTTCAGGCTGTGGCAGGGCACTGCTTTaGGTGGCGGGCACTGTGCTC +
Preference number: 4 (lower is better)
Translates to: TMECRARARTSVAACSGCGRALL*VAGTVL
Trigger: GAGCACAGTGCCCGCCACTCAAAGCAGTGCCCTGCC...ACAGCCTGAACAGGCAGCCACGCTGGTCCTTGCCCTTGCTCGGCACTCCATGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp CCAGCGTGGCTGCCTGTTCAGGCTGTGGTAGGGTCTGACCAAGGGCACCTGCTGGGTGGCTGCTGCCTTTaGAGCTGGCAGGGCACTGCT +
Preference number: 4 (lower is better)
Translates to: PAWLPVQAVVGSDQGHLLGGCCL*SWQGTA
Trigger: AGCAGTGCCCTGCCAGCTGCAAAGGCAGCAGCCACC...CAGCAGGTGCCCTTGGTCAGACCCTACCACAGCCTGAACAGGCAGCCACGCTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp ATCCACACAGGAGACAAGACTGCTCTCCCATGGCCCCCAGGCATGCCCCACTGGCGGCTCAGGGGTGGCTaGTGCCTTTGCAGCTGGCAG +
Preference number: 4 (lower is better)
Translates to: IHTGDKTALPWPPGMPHWRLRGG*CLCSWQ
Trigger: CTGCCAGCTGCAAAGGCAGCAGCCACCCCTGAGCCG...CCAGTGGGGCATGCCTGGGGGCCATGGGAGAGCAGTCTTGTCTCCTGTGTGGAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp ATCCACACAGGAGACAAGACTGCTCTCCCATGGCCCCCAGGCATGCCCCACTGGCACCCTCTAGGGCTGTaGTGTCCGGCTGGGCCACAG +
Preference number: 4 (lower is better)
Translates to: IHTGDKTALPWPPGMPHWHPLGL*CPAGPQ
Trigger: CTGTGGCCCAGCCGGACAGCACAGCCCTAGAGGGTG...CCAGTGGGGCATGCCTGGGGGCCATGGGAGAGCAGTCTTGTCTCCTGTGTGGAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR TCA 90 bp CCAGCGTGGCTGCCTGTTCAGGCTGTGGTAGGGTCTGACCAAGGGCACCTGCTGTGGCCTCTTCTGCGGTaGTCCGCTGGTCTTGCTCCA +
Preference number: 4 (lower is better)
Translates to: PAWLPVQAVVGSDQGHLLWPLLR*SAGLAP
Trigger: TGGAGCAAGACCAGCGGATCACCGCAGAAGAGGCCA...CAGCAGGTGCCCTTGGTCAGACCCTACCACAGCCTGAACAGGCAGCCACGCTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp GACCACCATGGAGTGCCGAGCAAGGGCAAGGACCAGCGTGGCTGCCTGTTCAGGCTGCCTTCCGCACCTTaGGGCCATCACGCTTCTGGA +
Preference number: 4 (lower is better)
Translates to: DHHGVPSKGKDQRGCLFRLPSAP*GHHASG
Trigger: TCCAGAAGCGTGATGGCCGCAAGGTGCGGAAGGCAG...CCTGAACAGGCAGCCACGCTGGTCCTTGCCCTTGCTCGGCACTCCATGGTGGTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp CCAGCGTGGCTGCCTGTTCAGGCTGTGGTAGGGTCTGACCAAGGGCACCTGCTGGCTGCCATCTGTGGCTaGAGTGGCGCTGCCATCTGT +
Preference number: 4 (lower is better)
Translates to: PAWLPVQAVVGSDQGHLLAAICG*SGAAIC
Trigger: ACAGATGGCAGCGCCACTCCAGCCACAGATGGCAGC...CAGCAGGTGCCCTTGGTCAGACCCTACCACAGCCTGAACAGGCAGCCACGCTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp GACCACCATGGAGTGCCGAGCAAGGGCAAGGACCAGCGTGGCTGCCTGTTCAGGACTCCCGTCAGTGGCTaGGGTGATGCTGCCATCCGT +
Preference number: 4 (lower is better)
Translates to: DHHGVPSKGKDQRGCLFRTPVSG*GDAAIR
Trigger: ACGGATGGCAGCATCACCCCAGCCACTGACGGGAGT...CCTGAACAGGCAGCCACGCTGGTCCTTGCCCTTGCTCGGCACTCCATGGTGGTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp CCAGCGTGGCTGCCTGTTCAGGCTGTGGTAGGGTCTGACCAAGGGCACCTGCTGACTCCCGTCAGTGGCTaGGGTGATGCTGCCATCCGT +
Preference number: 4 (lower is better)
Translates to: PAWLPVQAVVGSDQGHLLTPVSG*GDAAIR
Trigger: ACGGATGGCAGCATCACCCCAGCCACTGACGGGAGT...CAGCAGGTGCCCTTGGTCAGACCCTACCACAGCCTGAACAGGCAGCCACGCTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp ACCATGGAGTGCCGAGCAAGGGCAAGGACCAGCGTGGCTGCCTGTTCAGGCTGTCTAGAGGGTGGAGCCTaGCCTGTGGCACCCTCTAGG +
Preference number: 4 (lower is better)
Translates to: TMECRARARTSVAACSGCLEGGA*PVAPSR
Trigger: CCTAGAGGGTGCCACAGGCCAGGCTCCACCCTCTAG...ACAGCCTGAACAGGCAGCCACGCTGGTCCTTGCCCTTGCTCGGCACTCCATGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR TCA 90 bp CCAGCGTGGCTGCCTGTTCAGGCTGTGGTAGGGTCTGACCAAGGGCACCTGCTGCCTCCATCAGCCTGGTaGCCAGGTCTTTGGCTGCTT +
Preference number: 4 (lower is better)
Translates to: PAWLPVQAVVGSDQGHLLPPSAW*PGLWLL
Trigger: AAGCAGCCAAAGACCTGGTCACCAGGCTGATGGAGG...CAGCAGGTGCCCTTGGTCAGACCCTACCACAGCCTGAACAGGCAGCCACGCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR TCA 90 bp CTGCTGAGAGCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCACTGGCCCCAGAGGCTaGGGCAGCTCCACCTGCAGC +
Preference number: 4 (lower is better)
Translates to: LLRASLRELGNCSLLPHPTGPRG*GSSTCS
Trigger: GCTGCAGGTGGAGCTGCCTCAGCCTCTGGGGCCAGT...GGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGCTCTCAGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp GACCACCATGGAGTGCCGAGCAAGGGCAAGGACCAGCGTGGCTGCCTGTTCAGGAATCTCGTTCTTGGCTaGCTTCCGCACCTTGCGGCC +
Preference number: 4 (lower is better)
Translates to: DHHGVPSKGKDQRGCLFRNLVLG*LPHLAA
Trigger: GGCCGCAAGGTGCGGAAGGCAGCCAAGAACGAGATT...CCTGAACAGGCAGCCACGCTGGTCCTTGCCCTTGCTCGGCACTCCATGGTGGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp CCAGCGTGGCTGCCTGTTCAGGCTGTGGTAGGGTCTGACCAAGGGCACCTGCTGGTGATCCGCTGGTCTTaGTCCACCTCCATCAGCCTG +
Preference number: 4 (lower is better)
Translates to: PAWLPVQAVVGSDQGHLLVIRWS*STSISL
Trigger: CAGGCTGATGGAGGTGGAGCAAGACCAGCGGATCAC...CAGCAGGTGCCCTTGGTCAGACCCTACCACAGCCTGAACAGGCAGCCACGCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp ACCATGGAGTGCCGAGCAAGGGCAAGGACCAGCGTGGCTGCCTGTTCAGGCTGTTCCAGACTGCTCTGGTaGCCGGAGCCGCTTCATGAG +
Preference number: 4 (lower is better)
Translates to: TMECRARARTSVAACSGCSRLLW*PEPLHE
Trigger: CTCATGAAGCGGCTCCGGGCACCAGAGCAGTCTGGA...ACAGCCTGAACAGGCAGCCACGCTGGTCCTTGCCCTTGCTCGGCACTCCATGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp GCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCCTCAGGGGTGGCTGCTaGCTTTGCAGCTGGCAGGGC +
Preference number: 4 (lower is better)
Translates to: ASLRELGNCSLLPHPSQSLRGGC*LCSWQG
Trigger: GCCCTGCCAGCTGCAAAGGCAGCAGCCACCCCTGAG...GCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp GACCACCATGGAGTGCCGAGCAAGGGCAAGGACCAGCGTGGCTGCCTGTTCAGGTGTTCCAGACTGCTCTaGTGCCCGGAGCCGCTTCAT +
Preference number: 4 (lower is better)
Translates to: DHHGVPSKGKDQRGCLFRCSRLL*CPEPLH
Trigger: ATGAAGCGGCTCCGGGCACCAGAGCAGTCTGGAACA...CCTGAACAGGCAGCCACGCTGGTCCTTGCCCTTGCTCGGCACTCCATGGTGGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp GCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCGTGGAGCCTGGCCTGTaGCACCCTCTAGGGCTGTGC +
Preference number: 4 (lower is better)
Translates to: ASLRELGNCSLLPHPSQSVEPGL*HPLGLC
Trigger: GCACAGCCCTAGAGGGTGCCACAGGCCAGGCTCCAC...GCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp CTGCTGAGAGCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCCGGCTCAGGGGTGGCTaGTGCCTTTGCAGCTGGCAG +
Preference number: 4 (lower is better)
Translates to: LLRASLRELGNCSLLPHPRLRGG*CLCSWQ
Trigger: CTGCCAGCTGCAAAGGCAGCAGCCACCCCTGAGCCG...GGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGCTCTCAGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp ACCATGGAGTGCCGAGCAAGGGCAAGGACCAGCGTGGCTGCCTGTTCAGGCTGTTCTGCGGTGATCCGCTaGTCTTGCTCCACCTCCATC +
Preference number: 4 (lower is better)
Translates to: TMECRARARTSVAACSGCSAVIR*SCSTSI
Trigger: GATGGAGGTGGAGCAAGACCAGCGGATCACCGCAGA...ACAGCCTGAACAGGCAGCCACGCTGGTCCTTGCCCTTGCTCGGCACTCCATGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp GCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCGCTGCCATCCGTGGCTaGGGTGACGCTGCCATCTGT +
Preference number: 4 (lower is better)
Translates to: ASLRELGNCSLLPHPSQSAAIRG*GDAAIC
Trigger: ACAGATGGCAGCGTCACCCCAGCCACGGATGGCAGC...GCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR TCA 90 bp CTCACATACATCCACACAGGAGACAAGACTGCTCTCCCATGGCCCCCAGGCATGCCCGGAGCCGCTTCATaGGAGTGGTCACTCGGACAG +
Preference number: 4 (lower is better)
Translates to: LTYIHTGDKTALPWPPGMPGAAS*EWSLGQ
Trigger: CTGTCCGAGTGACCACTCTCATGAAGCGGCTCCGGG...CATGCCTGGGGGCCATGGGAGAGCAGTCTTGTCTCCTGTGTGGATGTATGTGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp CTCACATACATCCACACAGGAGACAAGACTGCTCTCCCATGGCCCCCAGGCATGACCTGCAGCTGCAGCTaGAGCTGCAGCAGCGATGGC +
Preference number: 4 (lower is better)
Translates to: LTYIHTGDKTALPWPPGMTCSCS*SCSSDG
Trigger: GCCATCGCTGCTGCAGCTGCAGCTGCAGCTGCAGGT...CATGCCTGGGGGCCATGGGAGAGCAGTCTTGTCTCCTGTGTGGATGTATGTGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp GGCCACAGCCTCCAAGACCTGCCGCACCACGTTGCTCGTGTCTCGCTCCGAGTACGGCCATCACGCTTCTaGAACTTCTTACAGGTGTGC +
Preference number: 4 (lower is better)
Translates to: GHSLQDLPHHVARVSLRVRPSRF*NFLQVC
Trigger: GCACACCTGTAAGAAGTTCCAGAAGCGTGATGGCCG...TACTCGGAGCGAGACACGAGCAACGTGGTGCGGCAGGTCTTGGAGGCTGTGGCC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193533.6
CDS-3UTR CCA 90 bp CCTGCCGCACCACGTTGCTCGTGTCTCGCTCCGAGTAGTAGCCCTGGTCCAGGATTCCAATCTCGTTCTTaGCTGCCTTCCGCACCTTGC +
Preference number: 4 (lower is better)
Translates to: PAAPRCSCLAPSSSPGPGFQSRS*LPSAPC
Trigger: GCAAGGTGCGGAAGGCAGCCAAGAACGAGATTGGAA...TCCTGGACCAGGGCTACTACTCGGAGCGAGACACGAGCAACGTGGTGCGGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193533.6
CDS-3UTR CCA 90 bp ATCCACACAGGAGACAAGACTGCTCTCCCATGGCCCCCAGGCATGCCCCACTGGCCGGAAATCCATTCGTaGGAGATGGCCTCTTCTGCG +
Preference number: 4 (lower is better)
Translates to: IHTGDKTALPWPPGMPHWPEIHS*EMASSA
Trigger: CGCAGAAGAGGCCATCTCCCACGAATGGATTTCCGG...CCAGTGGGGCATGCCTGGGGGCCATGGGAGAGCAGTCTTGTCTCCTGTGTGGAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp GCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCGCTGCCATCTGTGGCTaGAGTGGCGCTGCCATCTGT +
Preference number: 4 (lower is better)
Translates to: ASLRELGNCSLLPHPSQSAAICG*SGAAIC
Trigger: ACAGATGGCAGCGCCACTCCAGCCACAGATGGCAGC...GCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp ACCATGGAGTGCCGAGCAAGGGCAAGGACCAGCGTGGCTGCCTGTTCAGGCTGTTGCTGCCTTTGCAGCTaGCAGGGCACTGCTTTGAGT +
Preference number: 4 (lower is better)
Translates to: TMECRARARTSVAACSGCCCLCS*QGTALS
Trigger: ACTCAAAGCAGTGCCCTGCCAGCTGCAAAGGCAGCA...ACAGCCTGAACAGGCAGCCACGCTGGTCCTTGCCCTTGCTCGGCACTCCATGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR TCA 90 bp GACCACCATGGAGTGCCGAGCAAGGGCAAGGACCAGCGTGGCTGCCTGTTCAGGGAAGGGCGGGTTGCCTaGAAGCAGGATATACATGAT +
Preference number: 4 (lower is better)
Translates to: DHHGVPSKGKDQRGCLFREGRVA*KQDIHD
Trigger: ATCATGTATATCCTGCTTTCAGGCAACCCGCCCTTC...CCTGAACAGGCAGCCACGCTGGTCCTTGCCCTTGCTCGGCACTCCATGGTGGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035700.14
CDS-3UTR GCA 90 bp CATCCTCTCTTGCACACTCCTAGAGCAGCCCAAACACCACAGGTACACACCTTCAGCTGCAGCTGCAGCTaGAGCAGCGATGGCCCCACC +
Preference number: 4 (lower is better)
Translates to: HPLLHTPRAAQTPQVHTFSCSCS*SSDGPT
Trigger: GGTGGGGCCATCGCTGCTGCAGCTGCAGCTGCAGCT...GAAGGTGTGTACCTGTGGTGTTTGGGCTGCTCTAGGAGTGTGCAAGAGAGGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp CTGCTGAGAGCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCGAGTGGCGGGCACTGTaGTCTCTTCTGTGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: LLRASLRELGNCSLLPHPEWRAL*SLLWLV
Trigger: CACCAGCCACAGAAGAGAGCACAGTGCCCGCCACTC...GGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGCTCTCAGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp AGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACATGGCCACCCTCTAGGGCTGTaGTGTCCGGCTGGGCCACAG +
Preference number: 4 (lower is better)
Translates to: SWGTVVYFLIPARATSHGHPLGL*CPAGPQ
Trigger: CTGTGGCCCAGCCGGACAGCACAGCCCTAGAGGGTG...GCCATGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp CTCACATACATCCACACAGGAGACAAGACTGCTCTCCCATGGCCCCCAGGCATGCAGCAGCCCCAGGAGTaGCAGCGTCTGAAGCAGACT +
Preference number: 4 (lower is better)
Translates to: LTYIHTGDKTALPWPPGMQQPQE*QRLKQT
Trigger: AGTCTGCTTCAGACGCTGCCACTCCTGGGGCTGCTG...CATGCCTGGGGGCCATGGGAGAGCAGTCTTGTCTCCTGTGTGGATGTATGTGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp GCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTCCTTTACTAGAGGGTaGAGCCTGGCCTGTGGCACC +
Preference number: 4 (lower is better)
Translates to: ASLRELGNCSLLPHPSQSSFTRG*SLACGT
Trigger: GGTGCCACAGGCCAGGCTCCACCCTCTAGTAAAGGA...GCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR TCA 90 bp GACCACCATGGAGTGCCGAGCAAGGGCAAGGACCAGCGTGGCTGCCTGTTCAGGAGGTCTTTGGCTGCTTaGGAAATATCGTCCCAGTAC +
Preference number: 4 (lower is better)
Translates to: DHHGVPSKGKDQRGCLFRRSLAA*EISSQY
Trigger: GTACTGGGACGATATTTCTCAAGCAGCCAAAGACCT...CCTGAACAGGCAGCCACGCTGGTCCTTGCCCTTGCTCGGCACTCCATGGTGGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR TCA 90 bp TACCCATTCTCTCTCCCACTTCTGAGGATCCCCACAGCTAACATGCAATGCCTGGGCAGGGCACTGCTTTaGGTGGCGGGCACTGTGCTC +
Preference number: 4 (lower is better)
Translates to: YPFSLPLLRIPTANMQCLGRALL*VAGTVL
Trigger: GAGCACAGTGCCCGCCACTCAAAGCAGTGCCCTGCC...CAGGCATTGCATGTTAGCTGTGGGGATCCTCAGAAGTGGGAGAGAGAATGGGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp ATCCACACAGGAGACAAGACTGCTCTCCCATGGCCCCCAGGCATGCCCCACTGGAGCTTGAGGTTCCTGTaGACAATCTTGAGCGAGTGC +
Preference number: 4 (lower is better)
Translates to: IHTGDKTALPWPPGMPHWSLRFL*TILSEC
Trigger: GCACTCGCTCAAGATTGTGCACAGGAACCTCAAGCT...CCAGTGGGGCATGCCTGGGGGCCATGGGAGAGCAGTCTTGTCTCCTGTGTGGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp CTCACATACATCCACACAGGAGACAAGACTGCTCTCCCATGGCCCCCAGGCATGGGAGATGGCCTCTTCTaGGGTGATCCGCTGGTCTTG +
Preference number: 4 (lower is better)
Translates to: LTYIHTGDKTALPWPPGMGDGLF*GDPLVL
Trigger: CAAGACCAGCGGATCACCGCAGAAGAGGCCATCTCC...CATGCCTGGGGGCCATGGGAGAGCAGTCTTGTCTCCTGTGTGGATGTATGTGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp TTGCCAGGTTCAGTAGGCACACAGTTAGCCCACCAACCTTCACATACCAGAGCAAGCTGCAGCTGCAGCTaGAGCAGCGATGGCCCCACC +
Preference number: 4 (lower is better)
Translates to: LPGSVGTQLAHQPSHTRASCSCS*SSDGPT
Trigger: GGTGGGGCCATCGCTGCTGCAGCTGCAGCTGCAGCT...TGCTCTGGTATGTGAAGGTTGGTGGGCTAACTGTGTGCCTACTGAACCTGGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp AGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACATGGCGGTGGCTGCTGCCTTTaGAGCTGGCAGGGCACTGCT +
Preference number: 4 (lower is better)
Translates to: SWGTVVYFLIPARATSHGGGCCL*SWQGTA
Trigger: AGCAGTGCCCTGCCAGCTGCAAAGGCAGCAGCCACC...GCCATGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp GAAACTGGTGAAGCTAGCGAAAGACAGAAAGCCACAAGGAATCCATGCAGGGGCCTCAGGGGTGGCTGCTaGCTTTGCAGCTGGCAGGGC +
Preference number: 4 (lower is better)
Translates to: ETGEASERQKATRNPCRGLRGGC*LCSWQG
Trigger: GCCCTGCCAGCTGCAAAGGCAGCAGCCACCCCTGAG...GCCCCTGCATGGATTCCTTGTGGCTTTCTGTCTTTCGCTAGCTTCACCAGTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp CTCCAAGACCTGCCGCACCACGTTGCTCGTGTCTCGCTCCGAGTAGTAGCCCTGTACAGGTGTGCAGCTTaGCCGTTGTCTTGTCGTCTT +
Preference number: 4 (lower is better)
Translates to: LQDLPHHVARVSLRVVALYRCAA*PLSCRL
Trigger: AAGACGACAAGACAACGGGCAAGCTGCACACCTGTA...CAGGGCTACTACTCGGAGCGAGACACGAGCAACGTGGTGCGGCAGGTCTTGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193533.6
CDS-3UTR CCA 90 bp CATCCTCTCTTGCACACTCCTAGAGCAGCCCAAACACCACAGGTACACACCTTCGCTGCCATCCGTGGCTaGGGTGACGCTGCCATCTGT +
Preference number: 4 (lower is better)
Translates to: HPLLHTPRAAQTPQVHTFAAIRG*GDAAIC
Trigger: ACAGATGGCAGCGTCACCCCAGCCACGGATGGCAGC...GAAGGTGTGTACCTGTGGTGTTTGGGCTGCTCTAGGAGTGTGCAAGAGAGGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp CTGCTGAGAGCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCGGGCACTGCTTTGAGTaGCGGGCACTGTGCTCTCTT +
Preference number: 4 (lower is better)
Translates to: LLRASLRELGNCSLLPHPGHCFE*RALCSL
Trigger: AAGAGAGCACAGTGCCCGCCACTCAAAGCAGTGCCC...GGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGCTCTCAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp TTGCCAGGTTCAGTAGGCACACAGTTAGCCCACCAACCTTCACATACCAGAGCAGTGGAGCCTGGCCTGTaGCACCCTCTAGGGCTGTGC +
Preference number: 4 (lower is better)
Translates to: LPGSVGTQLAHQPSHTRAVEPGL*HPLGLC
Trigger: GCACAGCCCTAGAGGGTGCCACAGGCCAGGCTCCAC...TGCTCTGGTATGTGAAGGTTGGTGGGCTAACTGTGTGCCTACTGAACCTGGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp AGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACATGGCCTAGAGGGTGGAGCCTaGCCTGTGGCACCCTCTAGG +
Preference number: 4 (lower is better)
Translates to: SWGTVVYFLIPARATSHGLEGGA*PVAPSR
Trigger: CCTAGAGGGTGCCACAGGCCAGGCTCCACCCTCTAG...GCCATGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp CGCTGCACTAAGAGCAGAAAATCTGCTGCTGTGAAAAGCATGCTCCCAACGCAGCCTGCCGCACCACGTTaGTCGTGTCTCGCTCCGAGT +
Preference number: 4 (lower is better)
Translates to: RCTKSRKSAAVKSMLPTQPAAPR*SCLAPS
Trigger: ACTCGGAGCGAGACACGAGCAACGTGGTGCGGCAGG...CTGCGTTGGGAGCATGCTTTTCACAGCAGCAGATTTTCTGCTCTTAGTGCAGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp TACCCATTCTCTCTCCCACTTCTGAGGATCCCCACAGCTAACATGCAATGCCTGCCTGCCGCACCACGTTaGTCGTGTCTCGCTCCGAGT +
Preference number: 4 (lower is better)
Translates to: YPFSLPLLRIPTANMQCLPAAPR*SCLAPS
Trigger: ACTCGGAGCGAGACACGAGCAACGTGGTGCGGCAGG...CAGGCATTGCATGTTAGCTGTGGGGATCCTCAGAAGTGGGAGAGAGAATGGGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp AGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACATGGCTCCAGACTGCTCTGGTaGCCGGAGCCGCTTCATGAG +
Preference number: 4 (lower is better)
Translates to: SWGTVVYFLIPARATSHGSRLLW*PEPLHE
Trigger: CTCATGAAGCGGCTCCGGGCACCAGAGCAGTCTGGA...GCCATGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp TTGCCAGGTTCAGTAGGCACACAGTTAGCCCACCAACCTTCACATACCAGAGCAACCTGCAGCTGCAGCTaGAGCTGCAGCAGCGATGGC +
Preference number: 4 (lower is better)
Translates to: LPGSVGTQLAHQPSHTRATCSCS*SCSSDG
Trigger: GCCATCGCTGCTGCAGCTGCAGCTGCAGCTGCAGGT...TGCTCTGGTATGTGAAGGTTGGTGGGCTAACTGTGTGCCTACTGAACCTGGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp CATCCTCTCTTGCACACTCCTAGAGCAGCCCAAACACCACAGGTACACACCTTCACCACCCTCTGTGGCTaGAGTAGCACTGGCCCCAGA +
Preference number: 4 (lower is better)
Translates to: HPLLHTPRAAQTPQVHTFTTLCG*SSTGPR
Trigger: TCTGGGGCCAGTGCTACTGCAGCCACAGAGGGTGGT...GAAGGTGTGTACCTGTGGTGTTTGGGCTGCTCTAGGAGTGTGCAAGAGAGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR TCA 90 bp CCAGCGTGGCTGCCTGTTCAGGCTGTGGTAGGGTCTGACCAAGGGCACCTGCTGGCTGATGACAATCTTTaGGTTCTTCAGCCTGTTGTA +
Preference number: 4 (lower is better)
Translates to: PAWLPVQAVVGSDQGHLLADDNL*VLQPVV
Trigger: TACAACAGGCTGAAGAACTCAAAGATTGTCATCAGC...CAGCAGGTGCCCTTGGTCAGACCCTACCACAGCCTGAACAGGCAGCCACGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR TCA 90 bp GAAACTGGTGAAGCTAGCGAAAGACAGAAAGCCACAAGGAATCCATGCAGGGGCTGGCCTCTTCTGCGGTaGTCCGCTGGTCTTGCTCCA +
Preference number: 4 (lower is better)
Translates to: ETGEASERQKATRNPCRGWPLLR*SAGLAP
Trigger: TGGAGCAAGACCAGCGGATCACCGCAGAAGAGGCCA...GCCCCTGCATGGATTCCTTGTGGCTTTCTGTCTTTCGCTAGCTTCACCAGTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR TCA 90 bp TACCCATTCTCTCTCCCACTTCTGAGGATCCCCACAGCTAACATGCAATGCCTGCTCGTCTCCACCCTCTaGGACTCCTGGGCACATCCA +
Preference number: 4 (lower is better)
Translates to: YPFSLPLLRIPTANMQCLLVSTL*DSWAHP
Trigger: TGGATGTGCCCAGGAGTCTCAGAGGGTGGAGACGAG...CAGGCATTGCATGTTAGCTGTGGGGATCCTCAGAAGTGGGAGAGAGAATGGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp CTCACATACATCCACACAGGAGACAAGACTGCTCTCCCATGGCCCCCAGGCATGTACAGGTGTGCAGCTTaGCCGTTGTCTTGTCCTTGG +
Preference number: 4 (lower is better)
Translates to: LTYIHTGDKTALPWPPGMYRCAA*PLSCPW
Trigger: CCAAGGACAAGACAACGGGCAAGCTGCACACCTGTA...CATGCCTGGGGGCCATGGGAGAGCAGTCTTGTCTCCTGTGTGGATGTATGTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp AAGTATTCCTTGCGGGTCACAAACACATCTACCAGCTGCAGGATGTTGGGGTGCCTGCCTTCCGCACCTTaGGGCCATCACGCTTCTGGA +
Preference number: 4 (lower is better)
Translates to: KYSLRVTNTSTSCRMLGCLPSAP*GHHASG
Trigger: TCCAGAAGCGTGATGGCCGCAAGGTGCGGAAGGCAG...GCACCCCAACATCCTGCAGCTGGTAGATGTGTTTGTGACCCGCAAGGAATACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193533.6
CDS-3UTR GCA 90 bp AGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACATGGCAATCTCGTTCTTGGCTaGCTTCCGCACCTTGCGGCC +
Preference number: 4 (lower is better)
Translates to: SWGTVVYFLIPARATSHGNLVLG*LPHLAA
Trigger: GGCCGCAAGGTGCGGAAGGCAGCCAAGAACGAGATT...GCCATGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp AGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACATGGCGTGATCCGCTGGTCTTaGTCCACCTCCATCAGCCTG +
Preference number: 4 (lower is better)
Translates to: SWGTVVYFLIPARATSHGVIRWS*STSISL
Trigger: CAGGCTGATGGAGGTGGAGCAAGACCAGCGGATCAC...GCCATGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp CGCTGCACTAAGAGCAGAAAATCTGCTGCTGTGAAAAGCATGCTCCCAACGCAGACCACCCTCTGTGGCTaGAGTAGCACTGGCCCCAGA +
Preference number: 4 (lower is better)
Translates to: RCTKSRKSAAVKSMLPTQTTLCG*SSTGPR
Trigger: TCTGGGGCCAGTGCTACTGCAGCCACAGAGGGTGGT...CTGCGTTGGGAGCATGCTTTTCACAGCAGCAGATTTTCTGCTCTTAGTGCAGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp TGGCCAGAGGCTTTGCAGGGTGACGTTTATTTGCCAGGTTCAGTAGGCACACAGCCGTCCTACCACTTCTaGTGCCAGATACTCCGGGGT +
Preference number: 4 (lower is better)
Translates to: WPEALQGDVYLPGSVGTQPSYHF*CQILRG
Trigger: ACCCCGGAGTATCTGGCACCAGAAGTGGTAGGACGG...CTGTGTGCCTACTGAACCTGGCAAATAAACGTCACCCTGCAAAGCCTCTGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035700.14
CDS-3UTR CCA 90 bp CATCCTCTCTTGCACACTCCTAGAGCAGCCCAAACACCACAGGTACACACCTTCTCTGCGGTGATCCGCTaGTCTTGCTCCACCTCCATC +
Preference number: 4 (lower is better)
Translates to: HPLLHTPRAAQTPQVHTFSAVIR*SCSTSI
Trigger: GATGGAGGTGGAGCAAGACCAGCGGATCACCGCAGA...GAAGGTGTGTACCTGTGGTGTTTGGGCTGCTCTAGGAGTGTGCAAGAGAGGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp TACCCATTCTCTCTCCCACTTCTGAGGATCCCCACAGCTAACATGCAATGCCTGCAGCAGCCCCAGGAGTaGCAGCGTCTGAAGCAGACT +
Preference number: 4 (lower is better)
Translates to: YPFSLPLLRIPTANMQCLQQPQE*QRLKQT
Trigger: AGTCTGCTTCAGACGCTGCCACTCCTGGGGCTGCTG...CAGGCATTGCATGTTAGCTGTGGGGATCCTCAGAAGTGGGAGAGAGAATGGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR TCA 90 bp GCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCGGTGCTTCACCATCTTaGGGATTCCAATCTCGTTCT +
Preference number: 4 (lower is better)
Translates to: ASLRELGNCSLLPHPSQSGASPS*GFQSRS
Trigger: AGAACGAGATTGGAATCCTCAAGATGGTGAAGCACC...GCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp CCAGAGGCTTTGCAGGGTGACGTTTATTTGCCAGGTTCAGTAGGCACACAGTTACTGCCTTCCGCACCTTaGGGCCATCACGCTTCTGGA +
Preference number: 4 (lower is better)
Translates to: PEALQGDVYLPGSVGTQLLPSAP*GHHASG
Trigger: TCCAGAAGCGTGATGGCCGCAAGGTGCGGAAGGCAG...TAACTGTGTGCCTACTGAACCTGGCAAATAAACGTCACCCTGCAAAGCCTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035700.14
CDS-3UTR GCA 90 bp CTCACATACATCCACACAGGAGACAAGACTGCTCTCCCATGGCCCCCAGGCATGAACACATCTACCAGCTaGAGGATGTTGGGGTGCTTC +
Preference number: 4 (lower is better)
Translates to: LTYIHTGDKTALPWPPGMNTSTS*RMLGCF
Trigger: GAAGCACCCCAACATCCTGCAGCTGGTAGATGTGTT...CATGCCTGGGGGCCATGGGAGAGCAGTCTTGTCTCCTGTGTGGATGTATGTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp GCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTGTAGCACTACGATCTaGAGAGGCTATGTCATCGCT +
Preference number: 4 (lower is better)
Translates to: ASLRELGNCSLLPHPSQSCSTTI*RGYVIA
Trigger: AGCGATGACATAGCCTCTGCAGATCGTAGTGCTACA...GCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp CCAGAGGCTTTGCAGGGTGACGTTTATTTGCCAGGTTCAGTAGGCACACAGTTAGAGTGGCGGGCACTGTaGTCTCTTCTGTGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: PEALQGDVYLPGSVGTQLEWRAL*SLLWLV
Trigger: CACCAGCCACAGAAGAGAGCACAGTGCCCGCCACTC...TAACTGTGTGCCTACTGAACCTGGCAAATAAACGTCACCCTGCAAAGCCTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035700.14
CDS-3UTR CCA 90 bp AGCCTCCAAGACCTGCCGCACCACGTTGCTCGTGTCTCGCTCCGAGTAGTAGCCGTCAGTCACTTCCGATaGCTGGTTATAGTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: SLQDLPHHVARVSLRVVAVSHFR*LVIVLL
Trigger: AAGAAGAACTATAACCAGCCATCGGAAGTGACTGAC...GGCTACTACTCGGAGCGAGACACGAGCAACGTGGTGCGGCAGGTCTTGGAGGCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193533.6
CDS-3UTR CCA 90 bp CTGCTGAGAGCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCCCGTTGTCTTGTCCTTaGCCCGGAAGATTTCACAGA +
Preference number: 4 (lower is better)
Translates to: LLRASLRELGNCSLLPHPPLSCP*PGRFHR
Trigger: TCTGTGAAATCTTCCGGGCCAAGGACAAGACAACGG...GGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGCTCTCAGCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp CGCTGCACTAAGAGCAGAAAATCTGCTGCTGTGAAAAGCATGCTCCCAACGCAGTGTTCCAGACTGCTCTaGTGCCCGGAGCCGCTTCAT +
Preference number: 4 (lower is better)
Translates to: RCTKSRKSAAVKSMLPTQCSRLL*CPEPLH
Trigger: ATGAAGCGGCTCCGGGCACCAGAGCAGTCTGGAACA...CTGCGTTGGGAGCATGCTTTTCACAGCAGCAGATTTTCTGCTCTTAGTGCAGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp CATCCTCTCTTGCACACTCCTAGAGCAGCCCAAACACCACAGGTACACACCTTCGCTGCCATCTGTGGCTaGTGTAGCACTACGATCTGC +
Preference number: 4 (lower is better)
Translates to: HPLLHTPRAAQTPQVHTFAAICG*CSTTIC
Trigger: GCAGATCGTAGTGCTACACCAGCCACAGATGGCAGC...GAAGGTGTGTACCTGTGGTGTTTGGGCTGCTCTAGGAGTGTGCAAGAGAGGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp AGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACATGGCGCTGCCATCTGTGGCTaGTGTAGCACTACGATCTGC +
Preference number: 4 (lower is better)
Translates to: SWGTVVYFLIPARATSHGAAICG*CSTTIC
Trigger: GCAGATCGTAGTGCTACACCAGCCACAGATGGCAGC...GCCATGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp TTGCCAGGTTCAGTAGGCACACAGTTAGCCCACCAACCTTCACATACCAGAGCAGGGCACTGCTTTGAGTaGCGGGCACTGTGCTCTCTT +
Preference number: 4 (lower is better)
Translates to: LPGSVGTQLAHQPSHTRAGHCFE*RALCSL
Trigger: AAGAGAGCACAGTGCCCGCCACTCAAAGCAGTGCCC...TGCTCTGGTATGTGAAGGTTGGTGGGCTAACTGTGTGCCTACTGAACCTGGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp TTGCCAGGTTCAGTAGGCACACAGTTAGCCCACCAACCTTCACATACCAGAGCATCCTTTACTAGAGGGTaGAGCCTGGCCTGTGGCACC +
Preference number: 4 (lower is better)
Translates to: LPGSVGTQLAHQPSHTRASFTRG*SLACGT
Trigger: GGTGCCACAGGCCAGGCTCCACCCTCTAGTAAAGGA...TGCTCTGGTATGTGAAGGTTGGTGGGCTAACTGTGTGCCTACTGAACCTGGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
3UTR CAA 72 bp CTCCCCGTGGCCAGCTCCAGAAAGATGAAGTATTCCTaGCGGGTCACAAACACATCTACCAGCTGCAGGATG +
Preference number: 4 (lower is better)
Translates to: LPVASSRKMKYS*RVTNTSTSCRM
Trigger: CATCCTGCAGCTGGTAGATGTGTTTGTGACCCGCAAGGAATACTTCATCTTTCTGGAGCTGGCCACGGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000193533.6
CDS-3UTR TCA 90 bp CTGCTGAGAGCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGGTCTTTGGCTGCTTaGGAAATATCGTCCCAGTAC +
Preference number: 4 (lower is better)
Translates to: LLRASLRELGNCSLLPHPRSLAA*EISSQY
Trigger: GTACTGGGACGATATTTCTCAAGCAGCCAAAGACCT...GGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGCTCTCAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp CATCCTCTCTTGCACACTCCTAGAGCAGCCCAAACACCACAGGTACACACCTTCTACAGGTGTGCAGCTTaGCCGTTGTCTTGTCCTTGG +
Preference number: 4 (lower is better)
Translates to: HPLLHTPRAAQTPQVHTFYRCAA*PLSCPW
Trigger: CCAAGGACAAGACAACGGGCAAGCTGCACACCTGTA...GAAGGTGTGTACCTGTGGTGTTTGGGCTGCTCTAGGAGTGTGCAAGAGAGGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp CCAGAGGCTTTGCAGGGTGACGTTTATTTGCCAGGTTCAGTAGGCACACAGTTAGGAGATGGCCTCTTCTaGGGTGATCCGCTGGTCTTG +
Preference number: 4 (lower is better)
Translates to: PEALQGDVYLPGSVGTQLGDGLF*GDPLVL
Trigger: CAAGACCAGCGGATCACCGCAGAAGAGGCCATCTCC...TAACTGTGTGCCTACTGAACCTGGCAAATAAACGTCACCCTGCAAAGCCTCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035700.14
CDS-3UTR CCA 90 bp TGGCCAGAGGCTTTGCAGGGTGACGTTTATTTGCCAGGTTCAGTAGGCACACAGCGGCCATCACGCTTCTaGAACTTCTTACAGGTGTGC +
Preference number: 4 (lower is better)
Translates to: WPEALQGDVYLPGSVGTQRPSRF*NFLQVC
Trigger: GCACACCTGTAAGAAGTTCCAGAAGCGTGATGGCCG...CTGTGTGCCTACTGAACCTGGCAAATAAACGTCACCCTGCAAAGCCTCTGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035700.14
CDS-3UTR CCA 90 bp CATCCTCTCTTGCACACTCCTAGAGCAGCCCAAACACCACAGGTACACACCTTCCGGCCATCACGCTTCTaGAACTTCTTACAGGTGTGC +
Preference number: 4 (lower is better)
Translates to: HPLLHTPRAAQTPQVHTFRPSRF*NFLQVC
Trigger: GCACACCTGTAAGAAGTTCCAGAAGCGTGATGGCCG...GAAGGTGTGTACCTGTGGTGTTTGGGCTGCTCTAGGAGTGTGCAAGAGAGGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp CATCCTCTCTTGCACACTCCTAGAGCAGCCCAAACACCACAGGTACACACCTTCTTCCAATCTCGTTCTTaGCTGCCTTCCGCACCTTGC +
Preference number: 4 (lower is better)
Translates to: HPLLHTPRAAQTPQVHTFFQSRS*LPSAPC
Trigger: GCAAGGTGCGGAAGGCAGCCAAGAACGAGATTGGAA...GAAGGTGTGTACCTGTGGTGTTTGGGCTGCTCTAGGAGTGTGCAAGAGAGGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp AGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACATGGCTTCCAATCTCGTTCTTaGCTGCCTTCCGCACCTTGC +
Preference number: 4 (lower is better)
Translates to: SWGTVVYFLIPARATSHGFQSRS*LPSAPC
Trigger: GCAAGGTGCGGAAGGCAGCCAAGAACGAGATTGGAA...GCCATGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp TTGCCAGGTTCAGTAGGCACACAGTTAGCCCACCAACCTTCACATACCAGAGCACCGGAAATCCATTCGTaGGAGATGGCCTCTTCTGCG +
Preference number: 4 (lower is better)
Translates to: LPGSVGTQLAHQPSHTRAPEIHS*EMASSA
Trigger: CGCAGAAGAGGCCATCTCCCACGAATGGATTTCCGG...TGCTCTGGTATGTGAAGGTTGGTGGGCTAACTGTGTGCCTACTGAACCTGGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp CGCTGCACTAAGAGCAGAAAATCTGCTGCTGTGAAAAGCATGCTCCCAACGCAGTGCTGCCTTTGCAGCTaGCAGGGCACTGCTTTGAGT +
Preference number: 4 (lower is better)
Translates to: RCTKSRKSAAVKSMLPTQCCLCS*QGTALS
Trigger: ACTCAAAGCAGTGCCCTGCCAGCTGCAAAGGCAGCA...CTGCGTTGGGAGCATGCTTTTCACAGCAGCAGATTTTCTGCTCTTAGTGCAGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR TCA 90 bp AGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACACCAGCTCCAGAAAGATaGAGTATTCCTTGCGGGTCA +
Preference number: 4 (lower is better)
Translates to: RELGNCSLLPHPSQSYFTPAPER*SIPCGS
Trigger: TGACCCGCAAGGAATACTTCATCTTTCTGGAGCTGG...TGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR TCA 90 bp CATCCTCTCTTGCACACTCCTAGAGCAGCCCAAACACCACAGGTACACACCTTCCCAGCTCCAGAAAGATaGAGTATTCCTTGCGGGTCA +
Preference number: 4 (lower is better)
Translates to: HPLLHTPRAAQTPQVHTFPAPER*SIPCGS
Trigger: TGACCCGCAAGGAATACTTCATCTTTCTGGAGCTGG...GAAGGTGTGTACCTGTGGTGTTTGGGCTGCTCTAGGAGTGTGCAAGAGAGGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp AGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACAAACACATCTACCAGCTaGAGGATGTTGGGGTGCTTC +
Preference number: 4 (lower is better)
Translates to: RELGNCSLLPHPSQSYFTNTSTS*RMLGCF
Trigger: GAAGCACCCCAACATCCTGCAGCTGGTAGATGTGTT...TGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp TGGCCAGAGGCTTTGCAGGGTGACGTTTATTTGCCAGGTTCAGTAGGCACACAGCCGTTGTCTTGTCCTTaGCCCGGAAGATTTCACAGA +
Preference number: 4 (lower is better)
Translates to: WPEALQGDVYLPGSVGTQPLSCP*PGRFHR
Trigger: TCTGTGAAATCTTCCGGGCCAAGGACAAGACAACGG...CTGTGTGCCTACTGAACCTGGCAAATAAACGTCACCCTGCAAAGCCTCTGGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035700.14
CDS-3UTR TCA 90 bp TGGCCAGAGGCTTTGCAGGGTGACGTTTATTTGCCAGGTTCAGTAGGCACACAGCTAGGTTTTCCAGCTTaGGGTTCCTGTGCACAATCT +
Preference number: 4 (lower is better)
Translates to: WPEALQGDVYLPGSVGTQLGFPA*GSCAQS
Trigger: AGATTGTGCACAGGAACCTCAAGCTGGAAAACCTAG...CTGTGTGCCTACTGAACCTGGCAAATAAACGTCACCCTGCAAAGCCTCTGGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035700.14
CDS-3UTR GCA 90 bp AAGATGAAGTATTCCTTGCGGGTCACAAACACATCTACCAGCTGCAGGATGTTGAATCTCGTTCTTGGCTaGCTTCCGCACCTTGCGGCC +
Preference number: 4 (lower is better)
Translates to: KMKYSLRVTNTSTSCRMLNLVLG*LPHLAA
Trigger: GGCCGCAAGGTGCGGAAGGCAGCCAAGAACGAGATT...CAACATCCTGCAGCTGGTAGATGTGTTTGTGACCCGCAAGGAATACTTCATCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193533.6
CDS-3UTR GCA 90 bp TACCCATTCTCTCTCCCACTTCTGAGGATCCCCACAGCTAACATGCAATGCCTGAGCTTGAGGTTCCTGTaGACAATCTTGAGCGAGTGC +
Preference number: 4 (lower is better)
Translates to: YPFSLPLLRIPTANMQCLSLRFL*TILSEC
Trigger: GCACTCGCTCAAGATTGTGCACAGGAACCTCAAGCT...CAGGCATTGCATGTTAGCTGTGGGGATCCTCAGAAGTGGGAGAGAGAATGGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp AGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACACACCAGCCAGGATCTTaGGGAAGAGATTCTTATCGT +
Preference number: 4 (lower is better)
Translates to: RELGNCSLLPHPSQSYFTHQPGS*GRDSYR
Trigger: ACGATAAGAATCTCTTCCGCAAGATCCTGGCTGGTG...TGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR TCA 90 bp TACCCATTCTCTCTCCCACTTCTGAGGATCCCCACAGCTAACATGCAATGCCTGGGTGCTTCACCATCTTaGGGATTCCAATCTCGTTCT +
Preference number: 4 (lower is better)
Translates to: YPFSLPLLRIPTANMQCLGASPS*GFQSRS
Trigger: AGAACGAGATTGGAATCCTCAAGATGGTGAAGCACC...CAGGCATTGCATGTTAGCTGTGGGGATCCTCAGAAGTGGGAGAGAGAATGGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR TCA 90 bp GAAACTGGTGAAGCTAGCGAAAGACAGAAAGCCACAAGGAATCCATGCAGGGGCTCTAGCTTAGCCAGGTaGAAGTCGCTGATGACAATC +
Preference number: 4 (lower is better)
Translates to: ETGEASERQKATRNPCRGSSLAR*KSLMTI
Trigger: GATTGTCATCAGCGACTTTCACCTGGCTAAGCTAGA...GCCCCTGCATGGATTCCTTGTGGCTTTCTGTCTTTCGCTAGCTTCACCAGTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR TCA 90 bp TTGCCAGGTTCAGTAGGCACACAGTTAGCCCACCAACCTTCACATACCAGAGCATCTAGCTTAGCCAGGTaGAAGTCGCTGATGACAATC +
Preference number: 4 (lower is better)
Translates to: LPGSVGTQLAHQPSHTRASSLAR*KSLMTI
Trigger: GATTGTCATCAGCGACTTTCACCTGGCTAAGCTAGA...TGCTCTGGTATGTGAAGGTTGGTGGGCTAACTGTGTGCCTACTGAACCTGGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp TTGCCAGGTTCAGTAGGCACACAGTTAGCCCACCAACCTTCACATACCAGAGCACACCAGCCAGGATCTTaGGGAAGAGATTCTTATCGT +
Preference number: 4 (lower is better)
Translates to: LPGSVGTQLAHQPSHTRAHQPGS*GRDSYR
Trigger: ACGATAAGAATCTCTTCCGCAAGATCCTGGCTGGTG...TGCTCTGGTATGTGAAGGTTGGTGGGCTAACTGTGTGCCTACTGAACCTGGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR GCA 90 bp TTGCCAGGTTCAGTAGGCACACAGTTAGCCCACCAACCTTCACATACCAGAGCATGTAGCACTACGATCTaGAGAGGCTATGTCATCGCT +
Preference number: 4 (lower is better)
Translates to: LPGSVGTQLAHQPSHTRACSTTI*RGYVIA
Trigger: AGCGATGACATAGCCTCTGCAGATCGTAGTGCTACA...TGCTCTGGTATGTGAAGGTTGGTGGGCTAACTGTGTGCCTACTGAACCTGGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp AGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACATGGCGTCAGTCACTTCCGATaGCTGGTTATAGTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: SWGTVVYFLIPARATSHGVSHFR*LVIVLL
Trigger: AAGAAGAACTATAACCAGCCATCGGAAGTGACTGAC...GCCATGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR TCA 90 bp CGCTGCACTAAGAGCAGAAAATCTGCTGCTGTGAAAAGCATGCTCCCAACGCAGGCTGATGACAATCTTTaGGTTCTTCAGCCTGTTGTA +
Preference number: 4 (lower is better)
Translates to: RCTKSRKSAAVKSMLPTQADDNL*VLQPVV
Trigger: TACAACAGGCTGAAGAACTCAAAGATTGTCATCAGC...CTGCGTTGGGAGCATGCTTTTCACAGCAGCAGATTTTCTGCTCTTAGTGCAGCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CCA 90 bp TTGCCAGGTTCAGTAGGCACACAGTTAGCCCACCAACCTTCACATACCAGAGCAGTCAGTCACTTCCGATaGCTGGTTATAGTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: LPGSVGTQLAHQPSHTRAVSHFR*LVIVLL
Trigger: AAGAAGAACTATAACCAGCCATCGGAAGTGACTGAC...TGCTCTGGTATGTGAAGGTTGGTGGGCTAACTGTGTGCCTACTGAACCTGGCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CCA 90 bp CCTCTAGGGCTGTGCTGTCCGGCTGGGCCACAGCCGGCTCAGGGGTaGCTGCTGCCTTTGCAGCTGGCAGGGCACTGCTTTGAGTGGCGG +
Preference number: 5 (lower is better)
Translates to: PLGLCCPAGPQPAQG*LLPLQLAGHCFEWR
Trigger: CCGCCACTCAAAGCAGTGCCCTGCCAGCTGCAAAGGCAGCAGCCACCCCTGAGCCGGCTGTGGCCCAGCCGGACAGCACAGCCCTAGAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CCA 90 bp CGGCTGGGCCACAGCCGGCTCAGGGGTGGCTGCTGCCTTTGCAGCTaGCAGGGCACTGCTTTGAGTGGCGGGCACTGTGCTCTCTTCTGT +
Preference number: 5 (lower is better)
Translates to: RLGHSRLRGGCCLCS*QGTALSGGHCALFC
Trigger: ACAGAAGAGAGCACAGTGCCCGCCACTCAAAGCAGTGCCCTGCCAGCTGCAAAGGCAGCAGCCACCCCTGAGCCGGCTGTGGCCCAGCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS GCA 90 bp GGAGTGGCAGCGTCTGAAGCAGACTGGGTCGCCGCTGTTCCAGACTaGTCTGGTGCCCGGAGCCGCTTCATGAGAGTGGTCACTCGGACA +
Preference number: 5 (lower is better)
Translates to: GVAASEADWVAAVPD*SGARSRFMRVVTRT
Trigger: TGTCCGAGTGACCACTCTCATGAAGCGGCTCCGGGCACCAGAGCAGTCTGGAACAGCGGCGACCCAGTCTGCTTCAGACGCTGCCACTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp CCAGCGTGGCTGCCTGTTCAGGCTGTGGTAGGGTCTGACCAAGGGCACCTGCTGGGTGATCCGCTGGTCTaGCTCCACCTCCATCAGCCT +
Preference number: 5 (lower is better)
Translates to: PAWLPVQAVVGSDQGHLLGDPLV*LHLHQP
Trigger: AGGCTGATGGAGGTGGAGCAAGACCAGCGGATCACC...CAGCAGGTGCCCTTGGTCAGACCCTACCACAGCCTGAACAGGCAGCCACGCTGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS TCA 90 bp GGGTCGCCGCTGTTCCAGACTGCTCTGGTGCCCGGAGCCGCTTCATaGGAGTGGTCACTCGGACAGCCTTCTTCCACTTGGCTCTGGCAA +
Preference number: 5 (lower is better)
Translates to: GSPLFQTALVPGAAS*EWSLGQPSSTWLWQ
Trigger: TTGCCAGAGCCAAGTGGAAGAAGGCTGTCCGAGTGACCACTCTCATGAAGCGGCTCCGGGCACCAGAGCAGTCTGGAACAGCGGCGACCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS GCA 90 bp GCGAGTGCAAGTAGGCCACAGCCTCCAAGACCTGCCGCACCACGTTaGTCGTGTCTCGCTCCGAGTAGTAGCCCTGGTCCAGGATCCAGT +
Preference number: 5 (lower is better)
Translates to: ASASRPQPPRPAAPR*SCLAPSSSPGPGSS
Trigger: ACTGGATCCTGGACCAGGGCTACTACTCGGAGCGAGACACGAGCAACGTGGTGCGGCAGGTCTTGGAGGCTGTGGCCTACTTGCACTCGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CCA 90 bp TGGGCACATCCAGTAGCCTCTTCTCCTTTACTAGAGGGTGGAGCCTaGCCTGTGGCACCCTCTAGGGCTGTGCTGTCCGGCTGGGCCACA +
Preference number: 5 (lower is better)
Translates to: WAHPVASSPLLEGGA*PVAPSRAVLSGWAT
Trigger: TGTGGCCCAGCCGGACAGCACAGCCCTAGAGGGTGCCACAGGCCAGGCTCCACCCTCTAGTAAAGGAGAAGAGGCTACTGGATGTGCCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp CTGCTGAGAGCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCGGGTGGCTGCTGCCTTaGCAGCTGGCAGGGCACTGC +
Preference number: 5 (lower is better)
Translates to: LLRASLRELGNCSLLPHPGWLLP*QLAGHC
Trigger: GCAGTGCCCTGCCAGCTGCAAAGGCAGCAGCCACCC...GGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGCTCTCAGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS GCA 90 bp GGCTGGAGTGGCGCTGCCATCTGTGGCTGGTGTAGCACTACGATCTaGAGAGGCTATGTCATCGCTCTTGGCAGCACACCCAGCACCACC +
Preference number: 5 (lower is better)
Translates to: GWSGAAICGWCSTTI*RGYVIALGSTPSTT
Trigger: GGTGGTGCTGGGTGTGCTGCCAAGAGCGATGACATAGCCTCTGCAGATCGTAGTGCTACACCAGCCACAGATGGCAGCGCCACTCCAGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp CCAGCGTGGCTGCCTGTTCAGGCTGTGGTAGGGTCTGACCAAGGGCACCTGCTGCCCGTTGTCTTGTCCTaGGCCCGGAAGATTTCACAG +
Preference number: 5 (lower is better)
Translates to: PAWLPVQAVVGSDQGHLLPVVLS*ARKISQ
Trigger: CTGTGAAATCTTCCGGGCCAAGGACAAGACAACGGG...CAGCAGGTGCCCTTGGTCAGACCCTACCACAGCCTGAACAGGCAGCCACGCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS GCA 90 bp AGAAGCCGCGTTGCCGGAAATCCATTCGTGGGAGATGGCCTCTTCTaGGGTGATCCGCTGGTCTTGCTCCACCTCCATCAGCCTGGTGAC +
Preference number: 5 (lower is better)
Translates to: RSRVAGNPFVGDGLF*GDPLVLLHLHQPGD
Trigger: GTCACCAGGCTGATGGAGGTGGAGCAAGACCAGCGGATCACCGCAGAAGAGGCCATCTCCCACGAATGGATTTCCGGCAACGCGGCTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CCA 90 bp CCAACAGTCTACAGGGCGACCGTACCGTTGCCGTCCTACCACTTCTaGTGCCAGATACTCCGGGGTTCCACAGGGCTCCTTGATAAGGCC +
Preference number: 5 (lower is better)
Translates to: PTVYRATVPLPSYHF*CQILRGSTGLLDKA
Trigger: GGCCTTATCAAGGAGCCCTGTGGAACCCCGGAGTATCTGGCACCAGAAGTGGTAGGACGGCAACGGTACGGTCGCCCTGTAGACTGTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035700.14
CDS-3UTR CAA 90 bp CCAGCGTGGCTGCCTGTTCAGGCTGTGGTAGGGTCTGACCAAGGGCACCTGCTGTTACAGGTGTGCAGCTaGCCCGTTGTCTTGTCCTTG +
Preference number: 5 (lower is better)
Translates to: PAWLPVQAVVGSDQGHLLLQVCS*PVVLSL
Trigger: CAAGGACAAGACAACGGGCAAGCTGCACACCTGTAA...CAGCAGGTGCCCTTGGTCAGACCCTACCACAGCCTGAACAGGCAGCCACGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp GACCACCATGGAGTGCCGAGCAAGGGCAAGGACCAGCGTGGCTGCCTGTTCAGGGTTCCACAGGGCTCCTaGATAAGGCCATTCTCTAGC +
Preference number: 5 (lower is better)
Translates to: DHHGVPSKGKDQRGCLFRVPQGS*IRPFSS
Trigger: GCTAGAGAATGGCCTTATCAAGGAGCCCTGTGGAAC...CCTGAACAGGCAGCCACGCTGGTCCTTGCCCTTGCTCGGCACTCCATGGTGGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp CTGCTGAGAGCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCTGGCAGGGCACTGCTTaGAGTGGCGGGCACTGTGCT +
Preference number: 5 (lower is better)
Translates to: LLRASLRELGNCSLLPHPWQGTA*SGGHCA
Trigger: AGCACAGTGCCCGCCACTCAAAGCAGTGCCCTGCCA...GGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGCTCTCAGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CCA 90 bp CCGGAAATCCATTCGTGGGAGATGGCCTCTTCTGCGGTGATCCGCTaGTCTTGCTCCACCTCCATCAGCCTGGTGACCAGGTCTTTGGCT +
Preference number: 5 (lower is better)
Translates to: PEIHSWEMASSAVIR*SCSTSISLVTRSLA
Trigger: AGCCAAAGACCTGGTCACCAGGCTGATGGAGGTGGAGCAAGACCAGCGGATCACCGCAGAAGAGGCCATCTCCCACGAATGGATTTCCGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp CTGCTGAGAGCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCTGTGCAGCTTGCCCGTaGTCTTGTCCTTGGCCCGGA +
Preference number: 5 (lower is better)
Translates to: LLRASLRELGNCSLLPHPCAACP*SCPWPG
Trigger: TCCGGGCCAAGGACAAGACAACGGGCAAGCTGCACA...GGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGCTCTCAGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp TGGCCAGAGGCTTTGCAGGGTGACGTTTATTTGCCAGGTTCAGTAGGCACACAGACCTGCCGCACCACGTaGCTCGTGTCTCGCTCCGAG +
Preference number: 5 (lower is better)
Translates to: WPEALQGDVYLPGSVGTQTCRTT*LVSRSE
Trigger: CTCGGAGCGAGACACGAGCAACGTGGTGCGGCAGGT...CTGTGTGCCTACTGAACCTGGCAAATAAACGTCACCCTGCAAAGCCTCTGGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035700.14
CDS-3UTR CAA 90 bp CGCTGCACTAAGAGCAGAAAATCTGCTGCTGTGAAAAGCATGCTCCCAACGCAGGGGTGGCTGCTGCCTTaGCAGCTGGCAGGGCACTGC +
Preference number: 5 (lower is better)
Translates to: RCTKSRKSAAVKSMLPTQGWLLP*QLAGHC
Trigger: GCAGTGCCCTGCCAGCTGCAAAGGCAGCAGCCACCC...CTGCGTTGGGAGCATGCTTTTCACAGCAGCAGATTTTCTGCTCTTAGTGCAGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp AGCCTCCAAGACCTGCCGCACCACGTTGCTCGTGTCTCGCTCCGAGTAGTAGCCTGTGCAGCTTGCCCGTaGTCTTGTCGTCTTGATGAC +
Preference number: 5 (lower is better)
Translates to: SLQDLPHHVARVSLRVVACAACP*SCRLDD
Trigger: GTCATCAAGACGACAAGACAACGGGCAAGCTGCACA...GGCTACTACTCGGAGCGAGACACGAGCAACGTGGTGCGGCAGGTCTTGGAGGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193533.6
CDS GCA 90 bp ACAGTCTACAGGGCGACCGTACCGTTGCCGTCCTACCACTTCTGGTaGCAGATACTCCGGGGTTCCACAGGGCTCCTTGATAAGGCCATT +
Preference number: 5 (lower is better)
Translates to: TVYRATVPLPSYHFW*QILRGSTGLLDKAI
Trigger: AATGGCCTTATCAAGGAGCCCTGTGGAACCCCGGAGTATCTGGCACCAGAAGTGGTAGGACGGCAACGGTACGGTCGCCCTGTAGACTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035700.14
CDS-3UTR CAA 90 bp ATCCACACAGGAGACAAGACTGCTCTCCCATGGCCCCCAGGCATGCCCCACTGGGGGTGCTTCACCATCTaGAGGATTCCAATCTCGTTC +
Preference number: 5 (lower is better)
Translates to: IHTGDKTALPWPPGMPHWGCFTI*RIPISF
Trigger: GAACGAGATTGGAATCCTCAAGATGGTGAAGCACCC...CCAGTGGGGCATGCCTGGGGGCCATGGGAGAGCAGTCTTGTCTCCTGTGTGGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp GCATCCCTCAGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCACCAGCTGCAGGATGTaGGGGTGCTTCACCATCTTG +
Preference number: 5 (lower is better)
Translates to: ASLRELGNCSLLPHPSQSTSCRM*GCFTIL
Trigger: CAAGATGGTGAAGCACCCCAACATCCTGCAGCTGGT...GCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCTGAGGGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp CGCTGCACTAAGAGCAGAAAATCTGCTGCTGTGAAAAGCATGCTCCCAACGCAGACCTGCCGCACCACGTaGCTCGTGTCTCGCTCCGAG +
Preference number: 5 (lower is better)
Translates to: RCTKSRKSAAVKSMLPTQTCRTT*LVSRSE
Trigger: CTCGGAGCGAGACACGAGCAACGTGGTGCGGCAGGT...CTGCGTTGGGAGCATGCTTTTCACAGCAGCAGATTTTCTGCTCTTAGTGCAGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp ACCATGGAGTGCCGAGCAAGGGCAAGGACCAGCGTGGCTGCCTGTTCAGGCTGTACAGCCTTCTTCCACTaGGCTCTGGCAAAGTTCTTC +
Preference number: 5 (lower is better)
Translates to: TMECRARARTSVAACSGCTAFFH*ALAKFF
Trigger: GAAGAACTTTGCCAGAGCCAAGTGGAAGAAGGCTGT...ACAGCCTGAACAGGCAGCCACGCTGGTCCTTGCCCTTGCTCGGCACTCCATGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp CTCACATACATCCACACAGGAGACAAGACTGCTCTCCCATGGCCCCCAGGCATGGCTATGTCATCGCTCTaGGCAGCACACCCAGCACCA +
Preference number: 5 (lower is better)
Translates to: LTYIHTGDKTALPWPPGMAMSSL*AAHPAP
Trigger: TGGTGCTGGGTGTGCTGCCAAGAGCGATGACATAGC...CATGCCTGGGGGCCATGGGAGAGCAGTCTTGTCTCCTGTGTGGATGTATGTGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp AGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACATGGCAGGGCACTGCTTaGAGTGGCGGGCACTGTGCT +
Preference number: 5 (lower is better)
Translates to: RELGNCSLLPHPSQSYFTWQGTA*SGGHCA
Trigger: AGCACAGTGCCCGCCACTCAAAGCAGTGCCCTGCCA...TGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp AGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACATGTGCAGCTTGCCCGTaGTCTTGTCCTTGGCCCGGA +
Preference number: 5 (lower is better)
Translates to: RELGNCSLLPHPSQSYFTCAACP*SCPWPG
Trigger: TCCGGGCCAAGGACAAGACAACGGGCAAGCTGCACA...TGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp CGTGTCTCGCTCCGAGTAGTAGCCCTGGTCCAGGATCCAGTCAAACACCTCCCTATTCCAATCTCGTTCTaGGCTGCCTTCCGCACCTTG +
Preference number: 5 (lower is better)
Translates to: RVSLRVVALVQDPVKHLPIPISF*AAFRTL
Trigger: CAAGGTGCGGAAGGCAGCCAAGAACGAGATTGGAAT...AGGGAGGTGTTTGACTGGATCCTGGACCAGGGCTACTACTCGGAGCGAGACACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193533.6
CDS-3UTR CAA 90 bp GCTCGTGTCTCGCTCCGAGTAGTAGCCCTGGTCCAGGATCCAGTCAAACACCTCTTACAGGTGTGCAGCTaGCCCGTTGTCTTGTCGTCT +
Preference number: 5 (lower is better)
Translates to: ARVSLRVVALVQDPVKHLLQVCS*PVVLSS
Trigger: AGACGACAAGACAACGGGCAAGCTGCACACCTGTAA...GAGGTGTTTGACTGGATCCTGGACCAGGGCTACTACTCGGAGCGAGACACGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193533.6
CDS GCA 90 bp TTCCGCACCTTGCGGCCATCACGCTTCTGGAACTTCTTACAGGTGTaGAGCTTGCCCGTTGTCTTGTCCTTGGCCCGGAAGATTTCACAG +
Preference number: 5 (lower is better)
Translates to: FRTLRPSRFWNFLQV*SLPVVLSLARKISQ
Trigger: CTGTGAAATCTTCCGGGCCAAGGACAAGACAACGGGCAAGCTGCACACCTGTAAGAAGTTCCAGAAGCGTGATGGCCGCAAGGTGCGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CCA 90 bp ATCTCGTTCTTGGCTGCCTTCCGCACCTTGCGGCCATCACGCTTCTaGAACTTCTTACAGGTGTGCAGCTTGCCCGTTGTCTTGTCCTTG +
Preference number: 5 (lower is better)
Translates to: ISFLAAFRTLRPSRF*NFLQVCSLPVVLSL
Trigger: CAAGGACAAGACAACGGGCAAGCTGCACACCTGTAAGAAGTTCCAGAAGCGTGATGGCCGCAAGGTGCGGAAGGCAGCCAAGAACGAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CCA 90 bp ATCTCGTTCTTGGCTGCCTTCCGCACCTTGCGGCCATCACGCTTCTaGAACTTCTTACAGGTGTGCAGCTTGCCCGTTGTCTTGTCGTCT +
Preference number: 5 (lower is better)
Translates to: ISFLAAFRTLRPSRF*NFLQVCSLPVVLSS
Trigger: AGACGACAAGACAACGGGCAAGCTGCACACCTGTAAGAAGTTCCAGAAGCGTGATGGCCGCAAGGTGCGGAAGGCAGCCAAGAACGAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193533.6
CDS-3UTR CAA 90 bp GACCACCATGGAGTGCCGAGCAAGGGCAAGGACCAGCGTGGCTGCCTGTTCAGGAAGATGAAGTATTCCTaGCGGGTCACAAACACATCT +
Preference number: 5 (lower is better)
Translates to: DHHGVPSKGKDQRGCLFRKMKYS*RVTNTS
Trigger: AGATGTGTTTGTGACCCGCAAGGAATACTTCATCTT...CCTGAACAGGCAGCCACGCTGGTCCTTGCCCTTGCTCGGCACTCCATGGTGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp TTGCCAGGTTCAGTAGGCACACAGTTAGCCCACCAACCTTCACATACCAGAGCAGGTGATCCGCTGGTCTaGCTCCACCTCCATCAGCCT +
Preference number: 5 (lower is better)
Translates to: LPGSVGTQLAHQPSHTRAGDPLV*LHLHQP
Trigger: AGGCTGATGGAGGTGGAGCAAGACCAGCGGATCACC...TGCTCTGGTATGTGAAGGTTGGTGGGCTAACTGTGTGCCTACTGAACCTGGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS GCA 90 bp CCTTGCGGCCATCACGCTTCTGGAACTTCTTACAGGTGTGCAGCTTaGCCGTTGTCTTGTCCTTGGCCCGGAAGATTTCACAGAACTCCT +
Preference number: 5 (lower is better)
Translates to: PCGHHASGTSYRCAA*PLSCPWPGRFHRTP
Trigger: AGGAGTTCTGTGAAATCTTCCGGGCCAAGGACAAGACAACGGGCAAGCTGCACACCTGTAAGAAGTTCCAGAAGCGTGATGGCCGCAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp AGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACACCCGTTGTCTTGTCCTaGGCCCGGAAGATTTCACAG +
Preference number: 5 (lower is better)
Translates to: RELGNCSLLPHPSQSYFTPVVLS*ARKISQ
Trigger: CTGTGAAATCTTCCGGGCCAAGGACAAGACAACGGG...TGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp AGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACATGGCAGCTTGCCCGTTGTCTaGTCCTTGGCCCGGAAGATT +
Preference number: 5 (lower is better)
Translates to: SWGTVVYFLIPARATSHGSLPVV*SLARKI
Trigger: AATCTTCCGGGCCAAGGACAAGACAACGGGCAAGCT...GCCATGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp CTCACATACATCCACACAGGAGACAAGACTGCTCTCCCATGGCCCCCAGGCATGACAGCCTTCTTCCACTaGGCTCTGGCAAAGTTCTTC +
Preference number: 5 (lower is better)
Translates to: LTYIHTGDKTALPWPPGMTAFFH*ALAKFF
Trigger: GAAGAACTTTGCCAGAGCCAAGTGGAAGAAGGCTGT...CATGCCTGGGGGCCATGGGAGAGCAGTCTTGTCTCCTGTGTGGATGTATGTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp TACCCATTCTCTCTCCCACTTCTGAGGATCCCCACAGCTAACATGCAATGCCTGGCTATGTCATCGCTCTaGGCAGCACACCCAGCACCA +
Preference number: 5 (lower is better)
Translates to: YPFSLPLLRIPTANMQCLAMSSL*AAHPAP
Trigger: TGGTGCTGGGTGTGCTGCCAAGAGCGATGACATAGC...CAGGCATTGCATGTTAGCTGTGGGGATCCTCAGAAGTGGGAGAGAGAATGGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS GCA 90 bp GTTGGGGTGCTTCACCATCTTGAGGATTCCAATCTCGTTCTTGGCTaGCTTCCGCACCTTGCGGCCATCACGCTTCTGGAACTTCTTACA +
Preference number: 5 (lower is better)
Translates to: VGVLHHLEDSNLVLG*LPHLAAITLLELLT
Trigger: TGTAAGAAGTTCCAGAAGCGTGATGGCCGCAAGGTGCGGAAGGCAGCCAAGAACGAGATTGGAATCCTCAAGATGGTGAAGCACCCCAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp TTGCCAGGTTCAGTAGGCACACAGTTAGCCCACCAACCTTCACATACCAGAGCAAGCTTGCCCGTTGTCTaGTCCTTGGCCCGGAAGATT +
Preference number: 5 (lower is better)
Translates to: LPGSVGTQLAHQPSHTRASLPVV*SLARKI
Trigger: AATCTTCCGGGCCAAGGACAAGACAACGGGCAAGCT...TGCTCTGGTATGTGAAGGTTGGTGGGCTAACTGTGTGCCTACTGAACCTGGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp CATCCTCTCTTGCACACTCCTAGAGCAGCCCAAACACCACAGGTACACACCTTCATTCCAATCTCGTTCTaGGCTGCCTTCCGCACCTTG +
Preference number: 5 (lower is better)
Translates to: HPLLHTPRAAQTPQVHTFIPISF*AAFRTL
Trigger: CAAGGTGCGGAAGGCAGCCAAGAACGAGATTGGAAT...GAAGGTGTGTACCTGTGGTGTTTGGGCTGCTCTAGGAGTGTGCAAGAGAGGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp AGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACAATTCCAATCTCGTTCTaGGCTGCCTTCCGCACCTTG +
Preference number: 5 (lower is better)
Translates to: RELGNCSLLPHPSQSYFTIPISF*AAFRTL
Trigger: CAAGGTGCGGAAGGCAGCCAAGAACGAGATTGGAAT...TGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp TACCCATTCTCTCTCCCACTTCTGAGGATCCCCACAGCTAACATGCAATGCCTGACCAGCTGCAGGATGTaGGGGTGCTTCACCATCTTG +
Preference number: 5 (lower is better)
Translates to: YPFSLPLLRIPTANMQCLTSCRM*GCFTIL
Trigger: CAAGATGGTGAAGCACCCCAACATCCTGCAGCTGGT...CAGGCATTGCATGTTAGCTGTGGGGATCCTCAGAAGTGGGAGAGAGAATGGGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS TCA 90 bp TGGCTCTGGCAAAGTTCTTCTCAATCTGGGCACAGACGCCATCCTTaGTGTTCTTATCAGAAGCCGCGTTGCCGGAAATCCATTCGTGGG +
Preference number: 5 (lower is better)
Translates to: WLWQSSSQSGHRRHP*CSYQKPRCRKSIRG
Trigger: CCCACGAATGGATTTCCGGCAACGCGGCTTCTGATAAGAACATCAAGGATGGCGTCTGTGCCCAGATTGAGAAGAACTTTGCCAGAGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp TTGCCAGGTTCAGTAGGCACACAGTTAGCCCACCAACCTTCACATACCAGAGCATTACAGGTGTGCAGCTaGCCCGTTGTCTTGTCCTTG +
Preference number: 5 (lower is better)
Translates to: LPGSVGTQLAHQPSHTRALQVCS*PVVLSL
Trigger: CAAGGACAAGACAACGGGCAAGCTGCACACCTGTAA...TGCTCTGGTATGTGAAGGTTGGTGGGCTAACTGTGTGCCTACTGAACCTGGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp AGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACATGGCGGGTGCTTCACCATCTaGAGGATTCCAATCTCGTTC +
Preference number: 5 (lower is better)
Translates to: SWGTVVYFLIPARATSHGGCFTI*RIPISF
Trigger: GAACGAGATTGGAATCCTCAAGATGGTGAAGCACCC...GCCATGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp TTGCCAGGTTCAGTAGGCACACAGTTAGCCCACCAACCTTCACATACCAGAGCAGTTCCACAGGGCTCCTaGATAAGGCCATTCTCTAGC +
Preference number: 5 (lower is better)
Translates to: LPGSVGTQLAHQPSHTRAVPQGS*IRPFSS
Trigger: GCTAGAGAATGGCCTTATCAAGGAGCCCTGTGGAAC...TGCTCTGGTATGTGAAGGTTGGTGGGCTAACTGTGTGCCTACTGAACCTGGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp AGGGAGCTGGGGAACTGTAGTCTACTTCCTCATCCCAGCCAGAGCTACTTCACACTCAGTCTTGATGACTaGTCCCAGGTCATATCTGTC +
Preference number: 5 (lower is better)
Translates to: RELGNCSLLPHPSQSYFTLSLDD*SQVISV
Trigger: GACAGATATGACCTGGGACAAGTCATCAAGACTGAG...TGTGAAGTAGCTCTGGCTGGGATGAGGAAGTAGACTACAGTTCCCCAGCTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS-3UTR CAA 90 bp GAAACTGGTGAAGCTAGCGAAAGACAGAAAGCCACAAGGAATCCATGCAGGGGCGCACAGACGCCATCCTaGATGTTCTTATCAGAAGCC +
Preference number: 5 (lower is better)
Translates to: ETGEASERQKATRNPCRGAQTPS*MFLSEA
Trigger: GGCTTCTGATAAGAACATCAAGGATGGCGTCTGTGC...GCCCCTGCATGGATTCCTTGTGGCTTTCTGTCTTTCGCTAGCTTCACCAGTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS GCA 90 bp AGAAAGATGAAGTATTCCTTGCGGGTCACAAACACATCTACCAGCTaGAGGATGTTGGGGTGCTTCACCATCTTGAGGATTCCAATCTCG +
Preference number: 5 (lower is better)
Translates to: RKMKYSLRVTNTSTS*RMLGCFTILRIPIS
Trigger: CGAGATTGGAATCCTCAAGATGGTGAAGCACCCCAACATCCTGCAGCTGGTAGATGTGTTTGTGACCCGCAAGGAATACTTCATCTTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CCA 90 bp CGTCTTGATGACTTGTCCCAGGTCATATCTGTCAGTCACTTCCGATaGCTGGTTATAGTTCTTCTTGTCACCCAGAGTCACACACCCAAA +
Preference number: 5 (lower is better)
Translates to: RLDDLSQVISVSHFR*LVIVLLVTQSHTPK
Trigger: TTTGGGTGTGTGACTCTGGGTGACAAGAAGAACTATAACCAGCCATCGGAAGTGACTGACAGATATGACCTGGGACAAGTCATCAAGACG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193533.6
CDS-3UTR CAA 90 bp TCCAGAAAGATGAAGTATTCCTTGCGGGTCACAAACACATCTACCAGCTGCAGGTGTCGTCTTGATGACTaGTCCCAGGTCATATCTGTC +
Preference number: 5 (lower is better)
Translates to: SRKMKYSLRVTNTSTSCRCRLDD*SQVISV
Trigger: GACAGATATGACCTGGGACAAGTCATCAAGACGACA...CCTGCAGCTGGTAGATGTGTTTGTGACCCGCAAGGAATACTTCATCTTTCTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193533.6
CDS CCA 90 bp AGTCTTGATGACTTGTCCCAGGTCATATCTGTCAGTCACTTCCGATaGCTGGTTATAGTTCTTCTTGTCACCCAGAGTCACACACCCAAA +
Preference number: 5 (lower is better)
Translates to: SLDDLSQVISVSHFR*LVIVLLVTQSHTPK
Trigger: TTTGGGTGTGTGACTCTGGGTGACAAGAAGAACTATAACCAGCCATCGGAAGTGACTGACAGATATGACCTGGGACAAGTCATCAAGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
ENSMUST00000195219.2
CDS CCA 72 bp TGGCCTGTGGCACCCTCTAGGGCTGTGCTGTCCGGCTaGGCCACAGCCGGCTCAGGGGTGGCTGCTGCCTTT +
Preference number: 6 (lower is better)
Translates to: WPVAPSRAVLSG*ATAGSGVAAAF
Trigger: AAAGGCAGCAGCCACCCCTGAGCCGGCTGTGGCCCAGCCGGACAGCACAGCCCTAGAGGGTGCCACAGGCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CCA 72 bp CCAGCAGCCCCAGGAGTGGCAGCGTCTGAAGCAGACTaGGTCGCCGCTGTTCCAGACTGCTCTGGTGCCCGG +
Preference number: 6 (lower is better)
Translates to: PAAPGVAASEAD*VAAVPDCSGAR
Trigger: CCGGGCACCAGAGCAGTCTGGAACAGCGGCGACCCAGTCTGCTTCAGACGCTGCCACTCCTGGGGCTGCTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS TCA 72 bp GATGGCCCCACCAGCAGCCCCAGGAGTGGCAGCGTCTaGAGCAGACTGGGTCGCCGCTGTTCCAGACTGCTC +
Preference number: 6 (lower is better)
Translates to: DGPTSSPRSGSV*SRLGRRCSRLL
Trigger: GAGCAGTCTGGAACAGCGGCGACCCAGTCTGCTTCAGACGCTGCCACTCCTGGGGCTGCTGGTGGGGCCATC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CCA 72 bp CACAGCCGGCTCAGGGGTGGCTGCTGCCTTTGCAGCTaGCAGGGCACTGCTTTGAGTGGCGGGCACTGTGCT +
Preference number: 6 (lower is better)
Translates to: HSRLRGGCCLCS*QGTALSGGHCA
Trigger: AGCACAGTGCCCGCCACTCAAAGCAGTGCCCTGCCAGCTGCAAAGGCAGCAGCCACCCCTGAGCCGGCTGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS GCA 72 bp AGCAGACTGGGTCGCCGCTGTTCCAGACTGCTCTGGTaGCCGGAGCCGCTTCATGAGAGTGGTCACTCGGAC +
Preference number: 6 (lower is better)
Translates to: SRLGRRCSRLLW*PEPLHESGHSD
Trigger: GTCCGAGTGACCACTCTCATGAAGCGGCTCCGGGCACCAGAGCAGTCTGGAACAGCGGCGACCCAGTCTGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS GCA 72 bp GCGTCTGAAGCAGACTGGGTCGCCGCTGTTCCAGACTaGTCTGGTGCCCGGAGCCGCTTCATGAGAGTGGTC +
Preference number: 6 (lower is better)
Translates to: ASEADWVAAVPD*SGARSRFMRVV
Trigger: GACCACTCTCATGAAGCGGCTCCGGGCACCAGAGCAGTCTGGAACAGCGGCGACCCAGTCTGCTTCAGACGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CCA 72 bp CCAGTAGCCTCTTCTCCTTTACTAGAGGGTGGAGCCTaGCCTGTGGCACCCTCTAGGGCTGTGCTGTCCGGC +
Preference number: 6 (lower is better)
Translates to: PVASSPLLEGGA*PVAPSRAVLSG
Trigger: GCCGGACAGCACAGCCCTAGAGGGTGCCACAGGCCAGGCTCCACCCTCTAGTAAAGGAGAAGAGGCTACTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS GCA 72 bp AGGGCGACCGTACCGTTGCCGTCCTACCACTTCTGGTaGCAGATACTCCGGGGTTCCACAGGGCTCCTTGAT +
Preference number: 6 (lower is better)
Translates to: RATVPLPSYHFW*QILRGSTGLLD
Trigger: ATCAAGGAGCCCTGTGGAACCCCGGAGTATCTGGCACCAGAAGTGGTAGGACGGCAACGGTACGGTCGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035700.14
CDS GCA 72 bp CCAATGGCCCAACAGTCTACAGGGCGACCGTACCGTTaGCGTCCTACCACTTCTGGTGCCAGATACTCCGGG +
Preference number: 6 (lower is better)
Translates to: PMAQQSTGRPYR*RPTTSGARYSG
Trigger: CCCGGAGTATCTGGCACCAGAAGTGGTAGGACGGCAACGGTACGGTCGCCCTGTAGACTGTTGGGCCATTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035700.14
CDS CCA 72 bp TACAGGGCGACCGTACCGTTGCCGTCCTACCACTTCTaGTGCCAGATACTCCGGGGTTCCACAGGGCTCCTT +
Preference number: 6 (lower is better)
Translates to: YRATVPLPSYHF*CQILRGSTGLL
Trigger: AAGGAGCCCTGTGGAACCCCGGAGTATCTGGCACCAGAAGTGGTAGGACGGCAACGGTACGGTCGCCCTGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035700.14
CDS CCA 72 bp CATTCGTGGGAGATGGCCTCTTCTGCGGTGATCCGCTaGTCTTGCTCCACCTCCATCAGCCTGGTGACCAGG +
Preference number: 6 (lower is better)
Translates to: HSWEMASSAVIR*SCSTSISLVTR
Trigger: CCTGGTCACCAGGCTGATGGAGGTGGAGCAAGACCAGCGGATCACCGCAGAAGAGGCCATCTCCCACGAATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CAA 72 bp GCCAATGGCCCAACAGTCTACAGGGCGACCGTACCGTaGCCGTCCTACCACTTCTGGTGCCAGATACTCCGG +
Preference number: 6 (lower is better)
Translates to: ANGPTVYRATVP*PSYHFWCQILR
Trigger: CCGGAGTATCTGGCACCAGAAGTGGTAGGACGGCAACGGTACGGTCGCCCTGTAGACTGTTGGGCCATTGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035700.14
CDS TCA 72 bp CGGAAATCCATTCGTGGGAGATGGCCTCTTCTGCGGTaGTCCGCTGGTCTTGCTCCACCTCCATCAGCCTGG +
Preference number: 6 (lower is better)
Translates to: RKSIRGRWPLLR*SAGLAPPPSAW
Trigger: CCAGGCTGATGGAGGTGGAGCAAGACCAGCGGATCACCGCAGAAGAGGCCATCTCCCACGAATGGATTTCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS GCA 72 bp TGGGAGATGGCCTCTTCTGCGGTGATCCGCTGGTCTTaGTCCACCTCCATCAGCCTGGTGACCAGGTCTTTG +
Preference number: 6 (lower is better)
Translates to: WEMASSAVIRWS*STSISLVTRSL
Trigger: CAAAGACCTGGTCACCAGGCTGATGGAGGTGGAGCAAGACCAGCGGATCACCGCAGAAGAGGCCATCTCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CAA 90 bp CATGATGACGCCAATGGCCCAACAGTCTACAGGGCGACCGTACCGTaGCCGTCCTACCACTTCTGGTGCCAGATACTCCGGGGTTCCACA +
Preference number: 6 (lower is better)
Translates to: HDDANGPTVYRATVP*PSYHFWCQILRGST
Trigger: TGTGGAACCCCGGAGTATCTGGCACCAGAAGTGGTAGGACGGCAACGGTACGGTCGCCCTGTAGACTGTTGGGCCATTGGCGTCATCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035700.14
CDS CAA 90 bp GTGGCTGGTGTAGCACTACGATCTGCAGAGGCTATGTCATCGCTCTaGGCAGCACACCCAGCACCACCCTCTGTGGCTGCAGTAGCACTG +
Preference number: 6 (lower is better)
Translates to: VAGVALRSAEAMSSL*AAHPAPPSVAAVAL
Trigger: CAGTGCTACTGCAGCCACAGAGGGTGGTGCTGGGTGTGCTGCCAAGAGCGATGACATAGCCTCTGCAGATCGTAGTGCTACACCAGCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CAA 90 bp AATCCATTCGTGGGAGATGGCCTCTTCTGCGGTGATCCGCTGGTCTaGCTCCACCTCCATCAGCCTGGTGACCAGGTCTTTGGCTGCTTG +
Preference number: 6 (lower is better)
Translates to: NPFVGDGLFCGDPLV*LHLHQPGDQVFGCL
Trigger: CAAGCAGCCAAAGACCTGGTCACCAGGCTGATGGAGGTGGAGCAAGACCAGCGGATCACCGCAGAAGAGGCCATCTCCCACGAATGGATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS GCA 72 bp GTTGCCGGAAATCCATTCGTGGGAGATGGCCTCTTCTaGGGTGATCCGCTGGTCTTGCTCCACCTCCATCAG +
Preference number: 6 (lower is better)
Translates to: VAGNPFVGDGLF*GDPLVLLHLHQ
Trigger: CTGATGGAGGTGGAGCAAGACCAGCGGATCACCGCAGAAGAGGCCATCTCCCACGAATGGATTTCCGGCAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CCA 72 bp TTGGCTGCCTTCCGCACCTTGCGGCCATCACGCTTCTaGAACTTCTTACAGGTGTGCAGCTTGCCCGTTGTC +
Preference number: 6 (lower is better)
Translates to: LAAFRTLRPSRF*NFLQVCSLPVV
Trigger: GACAACGGGCAAGCTGCACACCTGTAAGAAGTTCCAGAAGCGTGATGGCCGCAAGGTGCGGAAGGCAGCCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035700.14
ENSMUST00000193533.6
ENSMUST00000194206.2
CDS CAA 72 bp GTAGCACTACGATCTGCAGAGGCTATGTCATCGCTCTaGGCAGCACACCCAGCACCACCCTCTGTGGCTGCA +
Preference number: 6 (lower is better)
Translates to: VALRSAEAMSSL*AAHPAPPSVAA
Trigger: TGCAGCCACAGAGGGTGGTGCTGGGTGTGCTGCCAAGAGCGATGACATAGCCTCTGCAGATCGTAGTGCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS GCA 72 bp TTGCGGCCATCACGCTTCTGGAACTTCTTACAGGTGTaGAGCTTGCCCGTTGTCTTGTCCTTGGCCCGGAAG +
Preference number: 6 (lower is better)
Translates to: LRPSRFWNFLQV*SLPVVLSLARK
Trigger: CTTCCGGGCCAAGGACAAGACAACGGGCAAGCTGCACACCTGTAAGAAGTTCCAGAAGCGTGATGGCCGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CAA 72 bp GGGTGCTTCACCATCTTGAGGATTCCAATCTCGTTCTaGGCTGCCTTCCGCACCTTGCGGCCATCACGCTTC +
Preference number: 6 (lower is better)
Translates to: GCFTILRIPISF*AAFRTLRPSRF
Trigger: GAAGCGTGATGGCCGCAAGGTGCGGAAGGCAGCCAAGAACGAGATTGGAATCCTCAAGATGGTGAAGCACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CAA 90 bp ACCTTGCGGCCATCACGCTTCTGGAACTTCTTACAGGTGTGCAGCTaGCCCGTTGTCTTGTCCTTGGCCCGGAAGATTTCACAGAACTCC +
Preference number: 6 (lower is better)
Translates to: TLRPSRFWNFLQVCS*PVVLSLARKISQNS
Trigger: GGAGTTCTGTGAAATCTTCCGGGCCAAGGACAAGACAACGGGCAAGCTGCACACCTGTAAGAAGTTCCAGAAGCGTGATGGCCGCAAGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CAA 90 bp AGGATGTTGGGGTGCTTCACCATCTTGAGGATTCCAATCTCGTTCTaGGCTGCCTTCCGCACCTTGCGGCCATCACGCTTCTGGAACTTC +
Preference number: 6 (lower is better)
Translates to: RMLGCFTILRIPISF*AAFRTLRPSRFWNF
Trigger: GAAGTTCCAGAAGCGTGATGGCCGCAAGGTGCGGAAGGCAGCCAAGAACGAGATTGGAATCCTCAAGATGGTGAAGCACCCCAACATCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS GCA 72 bp GGATTCCAATCTCGTTCTTGGCTGCCTTCCGCACCTTaGGGCCATCACGCTTCTGGAACTTCTTACAGGTGT +
Preference number: 6 (lower is better)
Translates to: GFQSRSWLPSAP*GHHASGTSYRC
Trigger: ACACCTGTAAGAAGTTCCAGAAGCGTGATGGCCGCAAGGTGCGGAAGGCAGCCAAGAACGAGATTGGAATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035700.14
ENSMUST00000193533.6
ENSMUST00000194206.2
CDS GCA 72 bp CTTCACCATCTTGAGGATTCCAATCTCGTTCTTGGCTaGCTTCCGCACCTTGCGGCCATCACGCTTCTGGAA +
Preference number: 6 (lower is better)
Translates to: LHHLEDSNLVLG*LPHLAAITLLE
Trigger: TTCCAGAAGCGTGATGGCCGCAAGGTGCGGAAGGCAGCCAAGAACGAGATTGGAATCCTCAAGATGGTGAAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CAA 72 bp AGGATTCCAATCTCGTTCTTGGCTGCCTTCCGCACCTaGCGGCCATCACGCTTCTGGAACTTCTTACAGGTG +
Preference number: 6 (lower is better)
Translates to: RIPISFLAAFRT*RPSRFWNFLQV
Trigger: CACCTGTAAGAAGTTCCAGAAGCGTGATGGCCGCAAGGTGCGGAAGGCAGCCAAGAACGAGATTGGAATCCT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035700.14
ENSMUST00000193533.6
ENSMUST00000194206.2
CDS CAA 90 bp GGCCATCACGCTTCTGGAACTTCTTACAGGTGTGCAGCTTGCCCGTaGTCTTGTCCTTGGCCCGGAAGATTTCACAGAACTCCTCAGTCT +
Preference number: 6 (lower is better)
Translates to: GHHASGTSYRCAACP*SCPWPGRFHRTPQS
Trigger: AGACTGAGGAGTTCTGTGAAATCTTCCGGGCCAAGGACAAGACAACGGGCAAGCTGCACACCTGTAAGAAGTTCCAGAAGCGTGATGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CAA 90 bp ACCATCTTGAGGATTCCAATCTCGTTCTTGGCTGCCTTCCGCACCTaGCGGCCATCACGCTTCTGGAACTTCTTACAGGTGTGCAGCTTG +
Preference number: 6 (lower is better)
Translates to: TILRIPISFLAAFRT*RPSRFWNFLQVCSL
Trigger: CAAGCTGCACACCTGTAAGAAGTTCCAGAAGCGTGATGGCCGCAAGGTGCGGAAGGCAGCCAAGAACGAGATTGGAATCCTCAAGATGGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000035700.14
ENSMUST00000193533.6
ENSMUST00000194206.2
CDS GCA 72 bp CATCACGCTTCTGGAACTTCTTACAGGTGTGCAGCTTaGCCGTTGTCTTGTCCTTGGCCCGGAAGATTTCAC +
Preference number: 6 (lower is better)
Translates to: HHASGTSYRCAA*PLSCPWPGRFH
Trigger: GTGAAATCTTCCGGGCCAAGGACAAGACAACGGGCAAGCTGCACACCTGTAAGAAGTTCCAGAAGCGTGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CAA 72 bp CCATCACGCTTCTGGAACTTCTTACAGGTGTGCAGCTaGCCCGTTGTCTTGTCCTTGGCCCGGAAGATTTCA +
Preference number: 6 (lower is better)
Translates to: PSRFWNFLQVCS*PVVLSLARKIS
Trigger: TGAAATCTTCCGGGCCAAGGACAAGACAACGGGCAAGCTGCACACCTGTAAGAAGTTCCAGAAGCGTGATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CAA 72 bp CAGACGCCATCCTTGATGTTCTTATCAGAAGCCGCGTaGCCGGAAATCCATTCGTGGGAGATGGCCTCTTCT +
Preference number: 6 (lower is better)
Translates to: QTPSLMFLSEAA*PEIHSWEMASS
Trigger: AGAAGAGGCCATCTCCCACGAATGGATTTCCGGCAACGCGGCTTCTGATAAGAACATCAAGGATGGCGTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CAA 90 bp TCACGCTTCTGGAACTTCTTACAGGTGTGCAGCTTGCCCGTTGTCTaGTCCTTGGCCCGGAAGATTTCACAGAACTCCTCAGTCTTGATG +
Preference number: 6 (lower is better)
Translates to: SRFWNFLQVCSLPVV*SLARKISQNSSVLM
Trigger: CATCAAGACTGAGGAGTTCTGTGAAATCTTCCGGGCCAAGGACAAGACAACGGGCAAGCTGCACACCTGTAAGAAGTTCCAGAAGCGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CAA 90 bp TTGGCTCTGGCAAAGTTCTTCTCAATCTGGGCACAGACGCCATCCTaGATGTTCTTATCAGAAGCCGCGTTGCCGGAAATCCATTCGTGG +
Preference number: 6 (lower is better)
Translates to: LALAKFFSIWAQTPS*MFLSEAALPEIHSW
Trigger: CCACGAATGGATTTCCGGCAACGCGGCTTCTGATAAGAACATCAAGGATGGCGTCTGTGCCCAGATTGAGAAGAACTTTGCCAGAGCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS GCA 72 bp CATCACGCTTCTGGAACTTCTTACAGGTGTGCAGCTTaGCCGTTGTCTTGTCGTCTTGATGACTTGTCCCAG +
Preference number: 6 (lower is better)
Translates to: HHASGTSYRCAA*PLSCRLDDLSQ
Trigger: CTGGGACAAGTCATCAAGACGACAAGACAACGGGCAAGCTGCACACCTGTAAGAAGTTCCAGAAGCGTGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193533.6
CDS CAA 72 bp TTCTTACAGGTGTGCAGCTTGCCCGTTGTCTTGTCCTaGGCCCGGAAGATTTCACAGAACTCCTCAGTCTTG +
Preference number: 6 (lower is better)
Translates to: FLQVCSLPVVLS*ARKISQNSSVL
Trigger: CAAGACTGAGGAGTTCTGTGAAATCTTCCGGGCCAAGGACAAGACAACGGGCAAGCTGCACACCTGTAAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CAA 72 bp TGGAACTTCTTACAGGTGTGCAGCTTGCCCGTTGTCTaGTCCTTGGCCCGGAAGATTTCACAGAACTCCTCA +
Preference number: 6 (lower is better)
Translates to: WNFLQVCSLPVV*SLARKISQNSS
Trigger: TGAGGAGTTCTGTGAAATCTTCCGGGCCAAGGACAAGACAACGGGCAAGCTGCACACCTGTAAGAAGTTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CAA 72 bp GCTTCTGGAACTTCTTACAGGTGTGCAGCTTGCCCGTaGTCTTGTCCTTGGCCCGGAAGATTTCACAGAACT +
Preference number: 6 (lower is better)
Translates to: ASGTSYRCAACP*SCPWPGRFHRT
Trigger: AGTTCTGTGAAATCTTCCGGGCCAAGGACAAGACAACGGGCAAGCTGCACACCTGTAAGAAGTTCCAGAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CAA 72 bp TGTGCAGCTTGCCCGTTGTCTTGTCGTCTTGATGACTaGTCCCAGGTCATATCTGTCAGTCACTTCCGATGG +
Preference number: 6 (lower is better)
Translates to: CAACPLSCRLDD*SQVISVSHFRW
Trigger: CCATCGGAAGTGACTGACAGATATGACCTGGGACAAGTCATCAAGACGACAAGACAACGGGCAAGCTGCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193533.6
CDS TCA 72 bp CAAAGTTCTTCTCAATCTGGGCACAGACGCCATCCTTaGTGTTCTTATCAGAAGCCGCGTTGCCGGAAATCC +
Preference number: 6 (lower is better)
Translates to: QSSSQSGHRRHP*CSYQKPRCRKS
Trigger: GGATTTCCGGCAACGCGGCTTCTGATAAGAACATCAAGGATGGCGTCTGTGCCCAGATTGAGAAGAACTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CAA 72 bp GCAAAGTTCTTCTCAATCTGGGCACAGACGCCATCCTaGATGTTCTTATCAGAAGCCGCGTTGCCGGAAATC +
Preference number: 6 (lower is better)
Translates to: AKFFSIWAQTPS*MFLSEAALPEI
Trigger: GATTTCCGGCAACGCGGCTTCTGATAAGAACATCAAGGATGGCGTCTGTGCCCAGATTGAGAAGAACTTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CAA 72 bp GCTTCTGGAACTTCTTACAGGTGTGCAGCTTGCCCGTaGTCTTGTCGTCTTGATGACTTGTCCCAGGTCATA +
Preference number: 6 (lower is better)
Translates to: ASGTSYRCAACP*SCRLDDLSQVI
Trigger: TATGACCTGGGACAAGTCATCAAGACGACAAGACAACGGGCAAGCTGCACACCTGTAAGAAGTTCCAGAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000193533.6
CDS CAA 90 bp TTCTGGAACTTCTTACAGGTGTGCAGCTTGCCCGTTGTCTTGTCCTaGGCCCGGAAGATTTCACAGAACTCCTCAGTCTTGATGACTTGT +
Preference number: 6 (lower is better)
Translates to: FWNFLQVCSLPVVLS*ARKISQNSSVLMTC
Trigger: ACAAGTCATCAAGACTGAGGAGTTCTGTGAAATCTTCCGGGCCAAGGACAAGACAACGGGCAAGCTGCACACCTGTAAGAAGTTCCAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS GCA 72 bp AAGTATTCCTTGCGGGTCACAAACACATCTACCAGCTaGAGGATGTTGGGGTGCTTCACCATCTTGAGGATT +
Preference number: 6 (lower is better)
Translates to: KYSLRVTNTSTS*RMLGCFTILRI
Trigger: AATCCTCAAGATGGTGAAGCACCCCAACATCCTGCAGCTGGTAGATGTGTTTGTGACCCGCAAGGAATACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2
CDS CCA 72 bp GACTTGTCCCAGGTCATATCTGTCAGTCACTTCCGATaGCTGGTTATAGTTCTTCTTGTCACCCAGAGTCAC +
Preference number: 6 (lower is better)
Translates to: DLSQVISVSHFR*LVIVLLVTQSH
Trigger: GTGACTCTGGGTGACAAGAAGAACTATAACCAGCCATCGGAAGTGACTGACAGATATGACCTGGGACAAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000035700.14
ENSMUST00000193533.6
ENSMUST00000194206.2
ENSMUST00000195219.2
CDS TCA 72 bp GGCTCCTTGATAAGGCCATTCTCTAGCTTAGCCAGGTaGAAGTCGCTGATGACAATCTTTGAGTTCTTCAGC +
Preference number: 6 (lower is better)
Translates to: GSLIRPFSSLAR*KSLMTIFEFFS
Trigger: GCTGAAGAACTCAAAGATTGTCATCAGCGACTTTCACCTGGCTAAGCTAGAGAATGGCCTTATCAAGGAGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035700.14
ENSMUST00000194206.2