Pregenerated sensors for CAMK2N2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051146Ensembl transcript IDs: ENSMUST00000052939.4
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGAGGTGGGTAGGAAGCTCATGCAAATATGCAGCCAAACCTCCCTaGCCGCGCAGTCCGACGCCGCAGCTGCCCGGGCTGCAGACCAGA | + |
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Preference number: 1 (lower is better) Translates to: LRWVGSSCKYAAKPP*PRSPTPQLPGLQTR Trigger: TCTGGTCTGCAGCCCGGGCAGCTGCGGCGTCGGACTGCGCGGCCAGGGAGGTTTGGCTGCATATTTGCATGAGCTTCCTACCCACCTCAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR GCA 90 bp | CATGTTGGGGGCTTGTCCCATCCCAGTCTCAACACCTGTTCTATCTaGCAGGCGCAGAAGAGCATGGCGGAGGCTGTGGGGGAAGGGCAC | + |
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Preference number: 1 (lower is better) Translates to: HVGGLSHPSLNTCSI*QAQKSMAEAVGEGH Trigger: GTGCCCTTCCCCCACAGCCTCCGCCATGCTCTTCTGCGCCTGGCAGATAGAACAGGTGTTGAGACTGGGATGGGACAAGCCCCCAACATG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR CCA 90 bp | ATCCCAGTCTCAACACCTGTTCTATCTGCCAGGCGCAGAAGAGCATaGCGGAGGCTGTGGGGGAAGGGCACAAACCATGAGCGGAGCCAG | + |
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Preference number: 1 (lower is better) Translates to: IPVSTPVLSARRRRA*RRLWGKGTNHERSQ Trigger: CTGGCTCCGCTCATGGTTTGTGCCCTTCCCCCACAGCCTCCGCCATGCTCTTCTGCGCCTGGCAGATAGAACAGGTGTTGAGACTGGGAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR TCA 90 bp | AGTCCCTTAGAAAGAGGCTGGGGTCACGCCAGACAGGGGTACAGTTaGGGAATTGCCCGGAGGGCTAGGCTGAGGTGGGTAGGAAGCTCA | + |
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Preference number: 1 (lower is better) Translates to: SPLERGWGHARQGYS*GIARRARLRWVGSS Trigger: TGAGCTTCCTACCCACCTCAGCCTAGCCCTCCGGGCAATTCCTCAACTGTACCCCTGTCTGGCGTGACCCCAGCCTCTTTCTAAGGGACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR TCA 90 bp | GCGGAGCCAGTAAACAAAGAATCGGATATAAAAATACAAATGTGCTaGGGAAGTCCCTTAGAAAGAGGCTGGGGTCACGCCAGACAGGGG | + |
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Preference number: 1 (lower is better) Translates to: AEPVNKESDIKIQMC*GSPLERGWGHARQG Trigger: CCCCTGTCTGGCGTGACCCCAGCCTCTTTCTAAGGGACTTCCTCAGCACATTTGTATTTTTATATCCGATTCTTTGTTTACTGGCTCCGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR-3UTR CCA 90 bp | ACGCCGCAGCTGCCCGGGCTGCAGACCAGATTGATCGGAGGAGGGGCGGGGCAGGCGGGCTGGGGGCCGTaGGTCTCTGTGTCGGTTCCG | + |
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Preference number: 2 (lower is better) Translates to: TPQLPGLQTRLIGGGAGQAGWGP*VSVSVP Trigger: CGGAACCGACACAGAGACCCACGGCCCCCAGCCCGC...CTGCCCCGCCCCTCCTCCGATCAATCTGGTCTGCAGCCCGGGCAGCTGCGGCGT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR-3UTR GCA 90 bp | GCTCATGCAAATATGCAGCCAAACCTCCCTGGCCGCGCAGTCCGACGCCGCAGCGTGTCGGTTCCGGTGTaGGGGGTGGAGCTGCGGCCC | + |
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Preference number: 2 (lower is better) Translates to: AHANMQPNLPGRAVRRRSVSVPV*GVELRP Trigger: GGGCCGCAGCTCCACCCCGCACACCGGAACCGACAC...GCTGCGGCGTCGGACTGCGCGGCCAGGGAGGTTTGGCTGCATATTTGCATGAGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR-3UTR CCA 90 bp | AGGAAGTCCCTTAGAAAGAGGCTGGGGTCACGCCAGACAGGGGTACAGTTGAGGTTCCGGTGTGCGGGGTaGAGCTGCGGCCCGAGGTTC | + |
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Preference number: 2 (lower is better) Translates to: RKSLRKRLGSRQTGVQLRFRCAG*SCGPRF Trigger: GAACCTCGGGCCGCAGCTCCACCCCGCACACCGGAA...CCTCAACTGTACCCCTGTCTGGCGTGACCCCAGCCTCTTTCTAAGGGACTTCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR-3UTR CCA 90 bp | GAAGAGCATGGCGGAGGCTGTGGGGGAAGGGCACAAACCATGAGCGGAGCCAGTCCCTTAGAAAGAGGCTaGGGTCACGCCAGACAGGGG | + |
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Preference number: 2 (lower is better) Translates to: EEHGGGCGGRAQTMSGASPLERG*GHARQG Trigger: CCCCTGTCTGGCGTGACCCCAGCCTCTTTCTAAGGG...ACTGGCTCCGCTCATGGTTTGTGCCCTTCCCCCACAGCCTCCGCCATGCTCTTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR CAA 90 bp | ACCTTGGGAGGGAGGAGTCTCCCAGTGAGCCTCCTGGGGTCAGAATaGGGCAGACTGGCCATGTGGTTAGTTACCATGTTGGGGGCTTGT | + |
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Preference number: 2 (lower is better) Translates to: TLGGRSLPVSLLGSE*GRLAMWLVTMLGAC Trigger: ACAAGCCCCCAACATGGTAACTAACCACATGGCCAGTCTGCCCAATTCTGACCCCAGGAGGCTCACTGGGAGACTCCTCCCTCCCAAGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR-3UTR CCA 90 bp | TCCGGTCCACAGGTGTCATCCAAAGGTACTGAGCAGTCCCCATTTGGGTTCCCAGCATGGCGGAGGCTGTaGGGGAAGGGCACAAACCAT | + |
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Preference number: 2 (lower is better) Translates to: SGPQVSSKGTEQSPFGFPAWRRL*GKGTNH Trigger: ATGGTTTGTGCCCTTCCCCCACAGCCTCCGCCATGC...TGGGAACCCAAATGGGGACTGCTCAGTACCTTTGGATGACACCTGTGGACCGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR CAA 90 bp | AGAATTGGGCAGACTGGCCATGTGGTTAGTTACCATGTTGGGGGCTaGTCCCATCCCAGTCTCAACACCTGTTCTATCTGCCAGGCGCAG | + |
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Preference number: 2 (lower is better) Translates to: RIGQTGHVVSYHVGG*SHPSLNTCSICQAQ Trigger: CTGCGCCTGGCAGATAGAACAGGTGTTGAGACTGGGATGGGACAAGCCCCCAACATGGTAACTAACCACATGGCCAGTCTGCCCAATTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR CAA 90 bp | CTGGGGTCAGAATTGGGCAGACTGGCCATGTGGTTAGTTACCATGTaGGGGGCTTGTCCCATCCCAGTCTCAACACCTGTTCTATCTGCC | + |
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Preference number: 2 (lower is better) Translates to: LGSELGRLAMWLVTM*GACPIPVSTPVLSA Trigger: GGCAGATAGAACAGGTGTTGAGACTGGGATGGGACAAGCCCCCAACATGGTAACTAACCACATGGCCAGTCTGCCCAATTCTGACCCCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR-3UTR GCA 90 bp | ACACACGGAGGTCTGTGTTTATTCACACACTCCTGTTACATTGAGGATGGAGAATCTAAAGTGCATGAGTaGGTCGGCGGGCTCCGGGCT | + |
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Preference number: 2 (lower is better) Translates to: THGGLCLFTHSCYIEDGESKVHE*VGGLRA Trigger: AGCCCGGAGCCCGCCGACGCACTCATGCACTTTAGA...TTCTCCATCCTCAATGTAACAGGAGTGTGTGAATAAACACAGACCTCCGTGTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR-3UTR TCA 90 bp | GGGCTTGTCCCATCCCAGTCTCAACACCTGTTCTATCTGCCAGGCGCAGAAGAGAAAATACAAATGTGCTaGGGAAGTCCCTTAGAAAGA | + |
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Preference number: 2 (lower is better) Translates to: GLVPSQSQHLFYLPGAEEKIQMC*GSPLER Trigger: TCTTTCTAAGGGACTTCCTCAGCACATTTGTATTTT...CTCTTCTGCGCCTGGCAGATAGAACAGGTGTTGAGACTGGGATGGGACAAGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR TCA 72 bp | TGGTCCGCACCACCACTACCGCCGCCGCCGTGGTGCTaGAGCGGACAGCTCCGGAGCGCCTGGCAGCGGCGG | + |
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Preference number: 3 (lower is better) Translates to: WSAPPLPPPPWC*SGQLRSAWQRR Trigger: CCGCCGCTGCCAGGCGCTCCGGAGCTGTCCGCTTCAGCACCACGGCGGCGGCGGTAGTGGTGGTGCGGACCA 75% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR GCA 72 bp | GGTGGAGCTGCGGCCCGAGGTTCTAAAGTGCATGAGTaGGTCGGCGGGCTCCGGGCTGGTCCGCACCACCAC | + |
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Preference number: 3 (lower is better) Translates to: GGAAARGSKVHE*VGGLRAGPHHH Trigger: GTGGTGGTGCGGACCAGCCCGGAGCCCGCCGACGCACTCATGCACTTTAGAACCTCGGGCCGCAGCTCCACC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR CCA 72 bp | GTAGGAAGCTCATGCAAATATGCAGCCAAACCTCCCTaGCCGCGCAGTCCGACGCCGCAGCTGCCCGGGCTG | + |
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Preference number: 3 (lower is better) Translates to: VGSSCKYAAKPP*PRSPTPQLPGL Trigger: CAGCCCGGGCAGCTGCGGCGTCGGACTGCGCGGCCAGGGAGGTTTGGCTGCATATTTGCATGAGCTTCCTAC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR TCA 72 bp | GAAAGAGGCTGGGGTCACGCCAGACAGGGGTACAGTTaGGGAATTGCCCGGAGGGCTAGGCTGAGGTGGGTA | + |
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Preference number: 3 (lower is better) Translates to: ERGWGHARQGYS*GIARRARLRWV Trigger: TACCCACCTCAGCCTAGCCCTCCGGGCAATTCCTCAACTGTACCCCTGTCTGGCGTGACCCCAGCCTCTTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR GCA 72 bp | GGCTTGTCCCATCCCAGTCTCAACACCTGTTCTATCTaGCAGGCGCAGAAGAGCATGGCGGAGGCTGTGGGG | + |
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Preference number: 3 (lower is better) Translates to: GLSHPSLNTCSI*QAQKSMAEAVG Trigger: CCCCACAGCCTCCGCCATGCTCTTCTGCGCCTGGCAGATAGAACAGGTGTTGAGACTGGGATGGGACAAGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR TCA 72 bp | AACATCTTCCGGTCCACAGGTGTCATCCAAAGGTACTaGGCAGTCCCCATTTGGGTTCCCAGGGGTAGCATG | + |
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Preference number: 3 (lower is better) Translates to: NIFRSTGVIQRY*AVPIWVPRGSM Trigger: CATGCTACCCCTGGGAACCCAAATGGGGACTGCTCAGTACCTTTGGATGACACCTGTGGACCGGAAGATGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR TCA 72 bp | AGCATGGCGGAGGCTGTGGGGGAAGGGCACAAACCATaGGCGGAGCCAGTAAACAAAGAATCGGATATAAAA | + |
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Preference number: 3 (lower is better) Translates to: SMAEAVGEGHKP*AEPVNKESDIK Trigger: TTTTATATCCGATTCTTTGTTTACTGGCTCCGCTCATGGTTTGTGCCCTTCCCCCACAGCCTCCGCCATGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR TCA 72 bp | GATGGAGAAACATTTTTACAAAGGACAACCCTGGGTTaGGAACATCTTCCGGTCCACAGGTGTCATCCAAAG | + |
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Preference number: 3 (lower is better) Translates to: DGETFLQRTTLG*EHLPVHRCHPK Trigger: CTTTGGATGACACCTGTGGACCGGAAGATGTTCTCAACCCAGGGTTGTCCTTTGTAAAAATGTTTCTCCATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| CDS-3UTR GCA 90 bp | AGCGGCGGTAGCAACACTGACCCCGTGGCGGCGTGGCCCTGCAGCCCCCGCCCGGGAACCTTCGGGGTCTaGGCCGAAGCGGCCCATCTT | + |
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Preference number: 4 (lower is better) Translates to: SGGSNTDPVAAWPCSPRPGTFGV*AEAAHL Trigger: AAGATGGGCCGCTTCGGCGCAGACCCCGAAGGTTCC...CGGGCGGGGGCTGCAGGGCCACGCCGCCACGGGGTCAGTGTTGCTACCGCCGCT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| CDS-3UTR CCA 90 bp | TCCGGAGCGCCTGGCAGCGGCGGTAGCAACACTGACCCCGTGGCGGCGTGGCCCGGGGGCCGCTTGGCCTaGTTGCCAGCGAAGAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: SGAPGSGGSNTDPVAAWPGGRLA*LPAKKE Trigger: CTCCTTCTTCGCTGGCAACCAGGCCAAGCGGCCCCC...GGGCCACGCCGCCACGGGGTCAGTGTTGCTACCGCCGCTGCCAGGCGCTCCGGA 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| CDS-3UTR GCA 90 bp | GCGGTAGCAACACTGACCCCGTGGCGGCGTGGCCCTGCAGCCCCCGCCCGTAGGGCCGCTTGGCCTGGTTaGCAGCGAAGAAGGAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: AVATLTPWRRGPAAPARRAAWPG*QRRRSW Trigger: CCAACTCCTTCTTCGCTGGCAACCAGGCCAAGCGGC...CCTACGGGCGGGGGCTGCAGGGCCACGCCGCCACGGGGTCAGTGTTGCTACCGC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| CDS-3UTR CCA 90 bp | CAGCCAAACCTCCCTGGCCGCGCAGTCCGACGCCGCAGCTGCCCGGGCTGCAGACGATCACCACTCTCTTaGCTCGGCCGATCTGGCCCA | + |
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Preference number: 4 (lower is better) Translates to: QPNLPGRAVRRRSCPGCRRSPLS*LGRSGP Trigger: TGGGCCAGATCGGCCGAGCCAAGAGAGTGGTGATCG...TCTGCAGCCCGGGCAGCTGCGGCGTCGGACTGCGCGGCCAGGGAGGTTTGGCTG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| CDS-3UTR TCA 90 bp | TCTAAAGTGCATGAGTGCGTCGGCGGGCTCCGGGCTGGTCCGCACCACCACTACCCTGCAGGCGGCAGCTaGAAGAGAGGTCGGAACCTT | + |
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Preference number: 4 (lower is better) Translates to: SKVHECVGGLRAGPHHHYPAGGS*KRGRNL Trigger: AAGGTTCCGACCTCTCTTTCAGCTGCCGCCTGCAGG...GTAGTGGTGGTGCGGACCAGCCCGGAGCCCGCCGACGCACTCATGCACTTTAGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR CAA 72 bp | CAGACTGGCCATGTGGTTAGTTACCATGTTGGGGGCTaGTCCCATCCCAGTCTCAACACCTGTTCTATCTGC | + |
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Preference number: 4 (lower is better) Translates to: QTGHVVSYHVGG*SHPSLNTCSIC Trigger: GCAGATAGAACAGGTGTTGAGACTGGGATGGGACAAGCCCCCAACATGGTAACTAACCACATGGCCAGTCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| CDS-3UTR GCA 90 bp | AATACAAATGTGCTGAGGAAGTCCCTTAGAAAGAGGCTGGGGTCACGCCAGACAAAGGAGTTGGTGTCCTaGAGGCGGCAGCTGAAAGAG | + |
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Preference number: 4 (lower is better) Translates to: NTNVLRKSLRKRLGSRQTKELVS*RRQLKE Trigger: CTCTTTCAGCTGCCGCCTGCAGGACACCAACTCCTT...TGTCTGGCGTGACCCCAGCCTCTTTCTAAGGGACTTCCTCAGCACATTTGTATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| 3UTR CAA 72 bp | GGATGGAGAAACATTTTTACAAAGGACAACCCTGGGTaGAGAACATCTTCCGGTCCACAGGTGTCATCCAAA | + |
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Preference number: 4 (lower is better) Translates to: GWRNIFTKDNPG*RTSSGPQVSSK Trigger: TTTGGATGACACCTGTGGACCGGAAGATGTTCTCAACCCAGGGTTGTCCTTTGTAAAAATGTTTCTCCATCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| CDS-3UTR CAA 90 bp | CAGCCAAACCTCCCTGGCCGCGCAGTCCGACGCCGCAGCTGCCCGGGCTGCAGATCGATCACCACTCTCTaGGCTCGGCCGATCTGGCCC | + |
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Preference number: 5 (lower is better) Translates to: QPNLPGRAVRRRSCPGCRSITTL*ARPIWP Trigger: GGGCCAGATCGGCCGAGCCAAGAGAGTGGTGATCGA...TCTGCAGCCCGGGCAGCTGCGGCGTCGGACTGCGCGGCCAGGGAGGTTTGGCTG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| CDS-3UTR CAA 90 bp | AGGAAGTCCCTTAGAAAGAGGCTGGGGTCACGCCAGACAGGGGTACAGTTGAGGGGCCGCTTGGCCTGGTaGCCAGCGAAGAAGGAGTTG | + |
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Preference number: 5 (lower is better) Translates to: RKSLRKRLGSRQTGVQLRGRLAW*PAKKEL Trigger: CAACTCCTTCTTCGCTGGCAACCAGGCCAAGCGGCC...CCTCAACTGTACCCCTGTCTGGCGTGACCCCAGCCTCTTTCTAAGGGACTTCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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| CDS GCA 72 bp | GCGGCAGCTGAAAGAGAGGTCGGAACCTTCGGGGTCTaGGCCGAAGCGGCCCATCTTGTCCTCACCGTAGGG | + |
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Preference number: 6 (lower is better) Translates to: AAAEREVGTFGV*AEAAHLVLTVG Trigger: CCCTACGGTGAGGACAAGATGGGCCGCTTCGGCGCAGACCCCGAAGGTTCCGACCTCTCTTTCAGCTGCCGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052939.4 |
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