RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CALR3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000019732

Ensembl transcript IDs: ENSMUST00000019876.12, ENSMUST00000109974.2

Found 85 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACAGTGTCTCACTATGTGTCCCAGGCTGTCCTAGAACTCACTACATaGACCAGGCTGATGTGGAAATCCCAGATCTGTCTGCTTCTGCCT +
Preference number: 1 (lower is better)
Translates to: TVSHYVSQAVLELTT*TRLMWKSQICLLLP
Trigger: AGGCAGAAGCAGACAGATCTGGGATTTCCACATCAGCCTGGTCCATGTAGTGAGTTCTAGGACAGCCTGGGACACATAGTGAGACACTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
3UTR-3UTR GCA 90 bp TCCCAGGCTGTCCTAGAACTCACTACATGGACCAGGCTGATGTGGAAATCCCAGGAGATTAAAGGAGTGTaGCACCACATGCCGTCAACA +
Preference number: 2 (lower is better)
Translates to: SQAVLELTTWTRLMWKSQEIKGV*HHMPST
Trigger: TGTTGACGGCATGTGGTGGCACACTCCTTTAATCTC...CTGGGATTTCCACATCAGCCTGGTCCATGTAGTGAGTTCTAGGACAGCCTGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
3UTR-3UTR GCA 90 bp AAAAATTTAAACAGTGTCTCACTATGTGTCCCAGGCTGTCCTAGAACTCACTACTCAACAGAAACTTATTaGAGACCCTGGGGTCATAGG +
Preference number: 2 (lower is better)
Translates to: KNLNSVSLCVPGCPRTHYSTETY*RPWGHR
Trigger: CCTATGACCCCAGGGTCTGCAATAAGTTTCTGTTGA...GTAGTGAGTTCTAGGACAGCCTGGGACACATAGTGAGACACTGTTTAAATTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
3UTR CCA 72 bp GCTGTCCTAGAACTCACTACATGGACCAGGCTGATGTaGAAATCCCAGATCTGTCTGCTTCTGCCTCTCAAG +
Preference number: 3 (lower is better)
Translates to: AVLELTTWTRLM*KSQICLLLPLK
Trigger: CTTGAGAGGCAGAAGCAGACAGATCTGGGATTTCCACATCAGCCTGGTCCATGTAGTGAGTTCTAGGACAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
3UTR CCA 72 bp CACTATGTGTCCCAGGCTGTCCTAGAACTCACTACATaGACCAGGCTGATGTGGAAATCCCAGATCTGTCTG +
Preference number: 3 (lower is better)
Translates to: HYVSQAVLELTT*TRLMWKSQICL
Trigger: CAGACAGATCTGGGATTTCCACATCAGCCTGGTCCATGTAGTGAGTTCTAGGACAGCCTGGGACACATAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
3UTR GCA 72 bp TGCTTCTGCCTCTCAAGTCCTGAGATTAAAGGAGTGTaGCACCACATGCCGTCAACAGAAACTTATTGCAGA +
Preference number: 3 (lower is better)
Translates to: CFCLSSPEIKGV*HHMPSTETYCR
Trigger: TCTGCAATAAGTTTCTGTTGACGGCATGTGGTGGCACACTCCTTTAATCTCAGGACTTGAGAGGCAGAAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
3UTR-3UTR CAA 90 bp AATCCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGAGATTAAAGGAGTGTGCAACACAAACAGGGGATaGTTTTTCAGAAACTGGACA +
Preference number: 3 (lower is better)
Translates to: NPRSVCFCLSSPEIKGVCNTNRG*FFRNWT
Trigger: TGTCCAGTTTCTGAAAAACAATCCCCTGTTTGTGTT...GCACACTCCTTTAATCTCAGGACTTGAGAGGCAGAAGCAGACAGATCTGGGATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR GCA 90 bp CTATGTGTCCCAGGCTGTCCTAGAACTCACTACATGGACCAGGCTGATGTGGAAGAGTCATTGGTGGACTaGACCCAGCGGTTCCTCCAG +
Preference number: 4 (lower is better)
Translates to: LCVPGCPRTHYMDQADVEESLVD*TQRFLQ
Trigger: CTGGAGGAACCGCTGGGTGCAGTCCACCAATGACTC...TTCCACATCAGCCTGGTCCATGTAGTGAGTTCTAGGACAGCCTGGGACACATAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS-3UTR CCA 90 bp CCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGAGATTAAAGGAGTGTGCCACGCCATCCTCATATGGTaGCTTCTGCAGCCAGTCCCC +
Preference number: 4 (lower is better)
Translates to: PRSVCFCLSSPEIKGVCHAILIW*LLQPVP
Trigger: GGGGACTGGCTGCAGAAGCCACCATATGAGGATGGC...GTGGCACACTCCTTTAATCTCAGGACTTGAGAGGCAGAAGCAGACAGATCTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR CCA 90 bp ACATGGACCAGGCTGATGTGGAAATCCCAGATCTGTCTGCTTCTGCCTCTCAAGGGTCTCATCTTCTGGTaGAGCCACACGTCCTTGTCG +
Preference number: 4 (lower is better)
Translates to: TWTRLMWKSQICLLLPLKGLIFW*SHTSLS
Trigger: CGACAAGGACGTGTGGCTCCACCAGAAGATGAGACC...CTTGAGAGGCAGAAGCAGACAGATCTGGGATTTCCACATCAGCCTGGTCCATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR GCA 90 bp TCCCAGGCTGTCCTAGAACTCACTACATGGACCAGGCTGATGTGGAAATCCCAGCCACAGTCCATCTTCTaGTCATGCTTCACCGTGTAC +
Preference number: 4 (lower is better)
Translates to: SQAVLELTTWTRLMWKSQPQSIF*SCFTVY
Trigger: GTACACGGTGAAGCATGAGCAGAAGATGGACTGTGG...CTGGGATTTCCACATCAGCCTGGTCCATGTAGTGAGTTCTAGGACAGCCTGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS-3UTR CCA 90 bp AATCCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGAGATTAAAGGAGTGTGCGCCATCCTCATATGGTaGCTTCTGCAGCCAGTCCCC +
Preference number: 4 (lower is better)
Translates to: NPRSVCFCLSSPEIKGVCAILIW*LLQPVP
Trigger: GGGGACTGGCTGCAGAAGCCACCATATGAGGATGGC...GCACACTCCTTTAATCTCAGGACTTGAGAGGCAGAAGCAGACAGATCTGGGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR CCA 90 bp ATCCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGAGATTAAAGGAGTGTGCCGGTCTCATCTTCTGGTaGAGCCACACGTCCTTGTCG +
Preference number: 4 (lower is better)
Translates to: IPDLSASASQVLRLKECAGLIFW*SHTSLS
Trigger: CGACAAGGACGTGTGGCTCCACCAGAAGATGAGACC...GGCACACTCCTTTAATCTCAGGACTTGAGAGGCAGAAGCAGACAGATCTGGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR CCA 90 bp TCCCAGGCTGTCCTAGAACTCACTACATGGACCAGGCTGATGTGGAAATCCCAGAGTTCGCCCTGCCTGTaGAATCTGCTGAAATGGTTG +
Preference number: 4 (lower is better)
Translates to: SQAVLELTTWTRLMWKSQSSPCL*NLLKWL
Trigger: CAACCATTTCAGCAGATTCCACAGGCAGGGCGAACT...CTGGGATTTCCACATCAGCCTGGTCCATGTAGTGAGTTCTAGGACAGCCTGGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR CCA 90 bp GACCAGGCTGATGTGGAAATCCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGAGTTCGCCCTGCCTGTaGAATCTGCTGAAATGGTTG +
Preference number: 4 (lower is better)
Translates to: DQADVEIPDLSASASQVLSSPCL*NLLKWL
Trigger: CAACCATTTCAGCAGATTCCACAGGCAGGGCGAACT...CAGGACTTGAGAGGCAGAAGCAGACAGATCTGGGATTTCCACATCAGCCTGGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR TCA 90 bp CCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGAGATTAAAGGAGTGTGCCACCAGACGGAAACACCTTaGTGTAACCACCACCACAGT +
Preference number: 4 (lower is better)
Translates to: PRSVCFCLSSPEIKGVCHQTETP*CNHHHS
Trigger: ACTGTGGTGGTGGTTACATCAAGGTGTTTCCGTCTG...GTGGCACACTCCTTTAATCTCAGGACTTGAGAGGCAGAAGCAGACAGATCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS-3UTR TCA 90 bp CCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGAGATTAAAGGAGTGTGCCACGCCTGTGGAATCTGCTaGAATGGTTGTGCCTGTGAA +
Preference number: 4 (lower is better)
Translates to: PRSVCFCLSSPEIKGVCHACGIC*NGCACE
Trigger: TTCACAGGCACAACCATTTCAGCAGATTCCACAGGC...GTGGCACACTCCTTTAATCTCAGGACTTGAGAGGCAGAAGCAGACAGATCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR GCA 90 bp TGCCTCTCAAGTCCTGAGATTAAAGGAGTGTGCCACCACATGCCGTCAACAGAACCCGCATCCAGAAAGTaGTTTTCCCAATCCTGGACT +
Preference number: 4 (lower is better)
Translates to: CLSSPEIKGVCHHMPSTEPASRK*FSQSWT
Trigger: AGTCCAGGATTGGGAAAAGCACTTTCTGGATGCGGG...TTCTGTTGACGGCATGTGGTGGCACACTCCTTTAATCTCAGGACTTGAGAGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR CCA 90 bp ACATGGACCAGGCTGATGTGGAAATCCCAGATCTGTCTGCTTCTGCCTCTCAAGTGCTTTTCCCAATCCTaGACTTTACTGCCTTCCACC +
Preference number: 4 (lower is better)
Translates to: TWTRLMWKSQICLLLPLKCFSQS*TLLPST
Trigger: GGTGGAAGGCAGTAAAGTCCAGGATTGGGAAAAGCA...CTTGAGAGGCAGAAGCAGACAGATCTGGGATTTCCACATCAGCCTGGTCCATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR CCA 90 bp GACCAGGCTGATGTGGAAATCCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGATCCATCTCCTTTTCTaGACCCTTAGTTTCTCCCCA +
Preference number: 4 (lower is better)
Translates to: DQADVEIPDLSASASQVLIHLLF*TLSFSP
Trigger: TGGGGAGAAACTAAGGGTCCAGAAAAGGAGATGGAT...CAGGACTTGAGAGGCAGAAGCAGACAGATCTGGGATTTCCACATCAGCCTGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR CCA 90 bp ACATGGACCAGGCTGATGTGGAAATCCCAGATCTGTCTGCTTCTGCCTCTCAAGCTTCCTTGGCCTGTATaGCATCCATCTCCTTTTCTG +
Preference number: 4 (lower is better)
Translates to: TWTRLMWKSQICLLLPLKLPWPV*HPSPFL
Trigger: CAGAAAAGGAGATGGATGCCATACAGGCCAAGGAAG...CTTGAGAGGCAGAAGCAGACAGATCTGGGATTTCCACATCAGCCTGGTCCATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR TCA 90 bp TGCCTCTCAAGTCCTGAGATTAAAGGAGTGTGCCACCACATGCCGTCAACAGAAAAATGGTTGTGCCTGTaGAACTTCCCCATCAGCAGA +
Preference number: 4 (lower is better)
Translates to: CLSSPEIKGVCHHMPSTEKWLCL*NFPISR
Trigger: TCTGCTGATGGGGAAGTTTCACAGGCACAACCATTT...TTCTGTTGACGGCATGTGGTGGCACACTCCTTTAATCTCAGGACTTGAGAGGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR TCA 90 bp ATCCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGAGATTAAAGGAGTGTGCCAAATGGTTGTGCCTGTaGAACTTCCCCATCAGCAGA +
Preference number: 4 (lower is better)
Translates to: IPDLSASASQVLRLKECAKWLCL*NFPISR
Trigger: TCTGCTGATGGGGAAGTTTCACAGGCACAACCATTT...GGCACACTCCTTTAATCTCAGGACTTGAGAGGCAGAAGCAGACAGATCTGGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR TCA 90 bp GCTGATGTGGAAATCCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGAGATTAGCCTGTGGAATCTGCTaGAATGGTTGTGCCTGTGAA +
Preference number: 4 (lower is better)
Translates to: ADVEIPDLSASASQVLRLACGIC*NGCACE
Trigger: TTCACAGGCACAACCATTTCAGCAGATTCCACAGGC...TAATCTCAGGACTTGAGAGGCAGAAGCAGACAGATCTGGGATTTCCACATCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR GCA 90 bp GCTGATGTGGAAATCCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGAGATTACTCCCCAGGTGGCCTTaGCAAACTTCTCTGCATATT +
Preference number: 4 (lower is better)
Translates to: ADVEIPDLSASASQVLRLLPRWP*QTSLHI
Trigger: AATATGCAGAGAAGTTTGGCAAGGCCACCTGGGGAG...TAATCTCAGGACTTGAGAGGCAGAAGCAGACAGATCTGGGATTTCCACATCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR TCA 90 bp CCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGAGATTAAAGGAGTGTGCCACCATCCACCTTGCATCTaGTTGGCTTCTTGTTTTCAT +
Preference number: 4 (lower is better)
Translates to: PRSVCFCLSSPEIKGVCHHPPCI*LASCFH
Trigger: ATGAAAACAAGAAGCCAATCAGATGCAAGGTGGATG...GTGGCACACTCCTTTAATCTCAGGACTTGAGAGGCAGAAGCAGACAGATCTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR CCA 90 bp AAAAATTTAAACAGTGTCTCACTATGTGTCCCAGGCTGTCCTAGAACTCACTACACTGGGAGTCATTGGTaGACTGCACCCAGCGGTTCC +
Preference number: 4 (lower is better)
Translates to: KNLNSVSLCVPGCPRTHYTGSHW*TAPSGS
Trigger: GGAACCGCTGGGTGCAGTCCACCAATGACTCCCAGT...GTAGTGAGTTCTAGGACAGCCTGGGACACATAGTGAGACACTGTTTAAATTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS-3UTR CCA 90 bp ATCCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGAGATTAAAGGAGTGTGCCACAGCTCTAGACCAATaGCGCCAATGTTCTCAAACT +
Preference number: 4 (lower is better)
Translates to: IPDLSASASQVLRLKECATALDQ*RQCSQT
Trigger: AGTTTGAGAACATTGGCGCCATTGGTCTAGAGCTGT...GGCACACTCCTTTAATCTCAGGACTTGAGAGGCAGAAGCAGACAGATCTGGGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR CCA 90 bp AATCCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGAGATTAAAGGAGTGTGCCTTCCTTGGCCTGTATaGCATCCATCTCCTTTTCTG +
Preference number: 4 (lower is better)
Translates to: NPRSVCFCLSSPEIKGVCLPWPV*HPSPFL
Trigger: CAGAAAAGGAGATGGATGCCATACAGGCCAAGGAAG...GCACACTCCTTTAATCTCAGGACTTGAGAGGCAGAAGCAGACAGATCTGGGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR CCA 90 bp GCTGATGTGGAAATCCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGAGATTAACAGCTCTAGACCAATaGCGCCAATGTTCTCAAACT +
Preference number: 4 (lower is better)
Translates to: ADVEIPDLSASASQVLRLTALDQ*RQCSQT
Trigger: AGTTTGAGAACATTGGCGCCATTGGTCTAGAGCTGT...TAATCTCAGGACTTGAGAGGCAGAAGCAGACAGATCTGGGATTTCCACATCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR CCA 90 bp ATTAAAGGAGTGTGCCACCACATGCCGTCAACAGAAACTTATTGCAGACCCTGGATCCATCTCCTTTTCTaGACCCTTAGTTTCTCCCCA +
Preference number: 4 (lower is better)
Translates to: IKGVCHHMPSTETYCRPWIHLLF*TLSFSP
Trigger: TGGGGAGAAACTAAGGGTCCAGAAAAGGAGATGGAT...CCAGGGTCTGCAATAAGTTTCTGTTGACGGCATGTGGTGGCACACTCCTTTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR TCA 90 bp CCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGAGATTAAAGGAGTGTGCCACTATCAGGTCCAAACATaGTGTAGTACTGAGATTTTC +
Preference number: 4 (lower is better)
Translates to: PRSVCFCLSSPEIKGVCHYQVQT*CSTEIF
Trigger: GAAAATCTCAGTACTACATCATGTTTGGACCTGATA...GTGGCACACTCCTTTAATCTCAGGACTTGAGAGGCAGAAGCAGACAGATCTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS-3UTR CCA 90 bp AGTCCTGAGATTAAAGGAGTGTGCCACCACATGCCGTCAACAGAAACTTATTGCTCTAGAAACTCCTCCTaGAAGTACACAGTGGCTAGT +
Preference number: 4 (lower is better)
Translates to: SPEIKGVCHHMPSTETYCSRNSS*KYTVAS
Trigger: ACTAGCCACTGTGTACTTCCAGGAGGAGTTTCTAGA...GCAATAAGTTTCTGTTGACGGCATGTGGTGGCACACTCCTTTAATCTCAGGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS-3UTR CCA 90 bp GGATTGTTTTTCAGAAACTGGACAAATGACCATGTAGATGTGATCATTCAAATGCAAACTGGGAGTCATTaGTGGACTGCACCCAGCGGT +
Preference number: 4 (lower is better)
Translates to: GLFFRNWTNDHVDVIIQMQTGSH*WTAPSG
Trigger: ACCGCTGGGTGCAGTCCACCAATGACTCCCAGTTTG...CATTTGAATGATCACATCTACATGGTCATTTGTCCAGTTTCTGAAAAACAATCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS-3UTR CCA 90 bp CATGTAGATGTGATCATTCAAATGTGTATTATTAGAGTTGCAGCTGGGCCACTCCCCTTTGTTGCTGAATaGCTTGAAGCTCGCAGAGAT +
Preference number: 4 (lower is better)
Translates to: HVDVIIQMCIIRVAAGPLPFVAE*LEARRD
Trigger: ATCTCTGCGAGCTTCAAGCCATTCAGCAACAAAGGG...GAGTGGCCCAGCTGCAACTCTAATAATACACATTTGAATGATCACATCTACATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS-3UTR GCA 90 bp CATGTAGATGTGATCATTCAAATGTGTATTATTAGAGTTGCAGCTGGGCCACTCTCCATCTTCTGCTCATaGTTCACCGTGTACTGGATT +
Preference number: 4 (lower is better)
Translates to: HVDVIIQMCIIRVAAGPLSIFCS*FTVYWI
Trigger: AATCCAGTACACGGTGAAGCATGAGCAGAAGATGGA...GAGTGGCCCAGCTGCAACTCTAATAATACACATTTGAATGATCACATCTACATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS-3UTR CCA 90 bp AGGGGATTGTTTTTCAGAAACTGGACAAATGACCATGTAGATGTGATCATTCAATTTTCACTTCTTCCTTaGCCTGTATGGCATCCATCT +
Preference number: 4 (lower is better)
Translates to: RGLFFRNWTNDHVDVIIQFSLLP*PVWHPS
Trigger: AGATGGATGCCATACAGGCCAAGGAAGAAGTGAAAA...TTGAATGATCACATCTACATGGTCATTTGTCCAGTTTCTGAAAAACAATCCCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR CCA 90 bp GGATTGTTTTTCAGAAACTGGACAAATGACCATGTAGATGTGATCATTCAAATGTTTTCACTTCTTCCTTaGCCTGTATGGCATCCATCT +
Preference number: 4 (lower is better)
Translates to: GLFFRNWTNDHVDVIIQMFSLLP*PVWHPS
Trigger: AGATGGATGCCATACAGGCCAAGGAAGAAGTGAAAA...CATTTGAATGATCACATCTACATGGTCATTTGTCCAGTTTCTGAAAAACAATCC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS CCA 90 bp TGCACCCAGCGGTTCCTCCAGCGCTCTCCGTCTAGAAACTCCTCCTaGAAGTACACAGTGGCTAGTGCCACGCGCAGCACACAGATGGCC +
Preference number: 5 (lower is better)
Translates to: CTQRFLQRSPSRNSS*KYTVASATRSTQMA
Trigger: GGCCATCTGTGTGCTGCGCGTGGCACTAGCCACTGTGTACTTCCAGGAGGAGTTTCTAGACGGAGAGCGCTGGAGGAACCGCTGGGTGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS GCA 90 bp CCCGATGAGACTCTGAAGTGCCCAAACTGGGAGTCATTGGTGGACTaGACCCAGCGGTTCCTCCAGCGCTCTCCGTCTAGAAACTCCTCC +
Preference number: 5 (lower is better)
Translates to: PDETLKCPNWESLVD*TQRFLQRSPSRNSS
Trigger: GGAGGAGTTTCTAGACGGAGAGCGCTGGAGGAACCGCTGGGTGCAGTCCACCAATGACTCCCAGTTTGGGCACTTCAGAGTCTCATCGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS CCA 90 bp TCCTCCAGCGCTCTCCGTCTAGAAACTCCTCCTGGAAGTACACAGTaGCTAGTGCCACGCGCAGCACACAGATGGCCCAGAGCAATGCAC +
Preference number: 5 (lower is better)
Translates to: SSSALRLETPPGSTQ*LVPRAAHRWPRAMH
Trigger: GTGCATTGCTCTGGGCCATCTGTGTGCTGCGCGTGGCACTAGCCACTGTGTACTTCCAGGAGGAGTTTCTAGACGGAGAGCGCTGGAGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS GCA 90 bp AGCCAGCAGGTCTCATCTTCTGGTGGAGCCACACGTCCTTGTCGATaGCCTCAGCTTTCAGGCCATCCTCATATGGTGGCTTCTGCAGCC +
Preference number: 5 (lower is better)
Translates to: SQQVSSSGGATRPCR*PQLSGHPHMVASAA
Trigger: GGCTGCAGAAGCCACCATATGAGGATGGCCTGAAAGCTGAGGGCATCGACAAGGACGTGTGGCTCCACCAGAAGATGAGACCTGCTGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS CCA 90 bp CCACACGTCCTTGTCGATGCCCTCAGCTTTCAGGCCATCCTCATATaGTGGCTTCTGCAGCCAGTCCCCATCCAGCTCACTGTTCCAGTC +
Preference number: 5 (lower is better)
Translates to: PHVLVDALSFQAILI*WLLQPVPIQLTVPV
Trigger: GACTGGAACAGTGAGCTGGATGGGGACTGGCTGCAGAAGCCACCATATGAGGATGGCCTGAAAGCTGAGGGCATCGACAAGGACGTGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS GCA 90 bp TCTGCAGCCAGTCCCCATCCAGCTCACTGTTCCAGTCACTCGGCTTaGTGGCACCCGCATCCAGAAAGTGCTTTTCCCAATCCTGGACTT +
Preference number: 5 (lower is better)
Translates to: SAASPHPAHCSSHSA*WHPHPESAFPNPGL
Trigger: AAGTCCAGGATTGGGAAAAGCACTTTCTGGATGCGGGTGCCAGCAAGCCGAGTGACTGGAACAGTGAGCTGGATGGGGACTGGCTGCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS GCA 90 bp TTGTCGATGCCCTCAGCTTTCAGGCCATCCTCATATGGTGGCTTCTaGAGCCAGTCCCCATCCAGCTCACTGTTCCAGTCACTCGGCTTG +
Preference number: 5 (lower is better)
Translates to: LSMPSAFRPSSYGGF*SQSPSSSLFQSLGL
Trigger: CAAGCCGAGTGACTGGAACAGTGAGCTGGATGGGGACTGGCTGCAGAAGCCACCATATGAGGATGGCCTGAAAGCTGAGGGCATCGACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS CCA 90 bp GCAGCCAGTCCCCATCCAGCTCACTGTTCCAGTCACTCGGCTTGCTaGCACCCGCATCCAGAAAGTGCTTTTCCCAATCCTGGACTTTAC +
Preference number: 5 (lower is better)
Translates to: AASPHPAHCSSHSAC*HPHPESAFPNPGLY
Trigger: GTAAAGTCCAGGATTGGGAAAAGCACTTTCTGGATGCGGGTGCCAGCAAGCCGAGTGACTGGAACAGTGAGCTGGATGGGGACTGGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS CCA 90 bp CACGTCCTTGTCGATGCCCTCAGCTTTCAGGCCATCCTCATATGGTaGCTTCTGCAGCCAGTCCCCATCCAGCTCACTGTTCCAGTCACT +
Preference number: 5 (lower is better)
Translates to: HVLVDALSFQAILIW*LLQPVPIQLTVPVT
Trigger: AGTGACTGGAACAGTGAGCTGGATGGGGACTGGCTGCAGAAGCCACCATATGAGGATGGCCTGAAAGCTGAGGGCATCGACAAGGACGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR CAA 90 bp TCCCAGGCTGTCCTAGAACTCACTACATGGACCAGGCTGATGTGGAAATCCCAGCCAAACTGGGAGTCATaGGTGGACTGCACCCAGCGG +
Preference number: 5 (lower is better)
Translates to: SQAVLELTTWTRLMWKSQPNWES*VDCTQR
Trigger: CCGCTGGGTGCAGTCCACCAATGACTCCCAGTTTGG...CTGGGATTTCCACATCAGCCTGGTCCATGTAGTGAGTTCTAGGACAGCCTGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS-3UTR CAA 90 bp TCCCAGGCTGTCCTAGAACTCACTACATGGACCAGGCTGATGTGGAAATCCCAGTTCCAGTCACTCGGCTaGCTGGCACCCGCATCCAGA +
Preference number: 5 (lower is better)
Translates to: SQAVLELTTWTRLMWKSQFQSLG*LAPASR
Trigger: TCTGGATGCGGGTGCCAGCAAGCCGAGTGACTGGAA...CTGGGATTTCCACATCAGCCTGGTCCATGTAGTGAGTTCTAGGACAGCCTGGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR CAA 90 bp CTCTCAAGTCCTGAGATTAAAGGAGTGTGCCACCACATGCCGTCAACAGAAACTTTCCAGTCACTCGGCTaGCTGGCACCCGCATCCAGA +
Preference number: 5 (lower is better)
Translates to: LSSPEIKGVCHHMPSTETFQSLG*LAPASR
Trigger: TCTGGATGCGGGTGCCAGCAAGCCGAGTGACTGGAA...AGTTTCTGTTGACGGCATGTGGTGGCACACTCCTTTAATCTCAGGACTTGAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR CAA 90 bp GACCAGGCTGATGTGGAAATCCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGTCTCCCCAGGTGGCCTaGCCAAACTTCTCTGCATAT +
Preference number: 5 (lower is better)
Translates to: DQADVEIPDLSASASQVLSPQVA*PNFSAY
Trigger: ATATGCAGAGAAGTTTGGCAAGGCCACCTGGGGAGA...CAGGACTTGAGAGGCAGAAGCAGACAGATCTGGGATTTCCACATCAGCCTGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS TCA 90 bp TATAGTTCGCCCTGCCTGTGGAATCTGCTGAAATGGTTGTGCCTGTaGAACTTCCCCATCAGCAGATCCTCCTCATCTTCTTCACGGGCC +
Preference number: 5 (lower is better)
Translates to: YSSPCLWNLLKWLCL*NFPISRSSSSSSRA
Trigger: GGCCCGTGAAGAAGATGAGGAGGATCTGCTGATGGGGAAGTTTCACAGGCACAACCATTTCAGCAGATTCCACAGGCAGGGCGAACTATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR CAA 90 bp GACCAGGCTGATGTGGAAATCCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGGTGAAGCCATCCACCTaGCATCTGATTGGCTTCTTG +
Preference number: 5 (lower is better)
Translates to: DQADVEIPDLSASASQVLVKPST*HLIGFL
Trigger: CAAGAAGCCAATCAGATGCAAGGTGGATGGCTTCAC...CAGGACTTGAGAGGCAGAAGCAGACAGATCTGGGATTTCCACATCAGCCTGGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS TCA 90 bp CTTTGTCTTTCTCTTTATGCCCATAGAACTTCCCCGATGAGACTCTaGAGTGCCCAAACTGGGAGTCATTGGTGGACTGCACCCAGCGGT +
Preference number: 5 (lower is better)
Translates to: LCLSLYAHRTSPMRL*SAQTGSHWWTAPSG
Trigger: ACCGCTGGGTGCAGTCCACCAATGACTCCCAGTTTGGGCACTTCAGAGTCTCATCGGGGAAGTTCTATGGGCATAAAGAGAAAGACAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS TCA 90 bp CTGCAGGCCTTTGTCTTTCTCTTTATGCCCATAGAACTTCCCCGATaGGACTCTGAAGTGCCCAAACTGGGAGTCATTGGTGGACTGCAC +
Preference number: 5 (lower is better)
Translates to: LQAFVFLFMPIELPR*DSEVPKLGVIGGLH
Trigger: GTGCAGTCCACCAATGACTCCCAGTTTGGGCACTTCAGAGTCTCATCGGGGAAGTTCTATGGGCATAAAGAGAAAGACAAAGGCCTGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS-3UTR CAA 90 bp CCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGAGATTAAAGGAGTGTGCCACTTGTTGCTGAATGGCTaGAAGCTCGCAGAGATGGCA +
Preference number: 5 (lower is better)
Translates to: PRSVCFCLSSPEIKGVCHLLLNG*KLAEMA
Trigger: TGCCATCTCTGCGAGCTTCAAGCCATTCAGCAACAA...GTGGCACACTCCTTTAATCTCAGGACTTGAGAGGCAGAAGCAGACAGATCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS TCA 90 bp CTGGACTTTACTGCCTTCCACCTGATCCCAGTCCCTAGAGTCCAGTaGTGTCTTTTCCGTTTTCCTCAGCGATGTCAGGTTCCAGTCATA +
Preference number: 5 (lower is better)
Translates to: LDFTAFHLIPVPRVQ*CLFRFPQRCQVPVI
Trigger: TATGACTGGAACCTGACATCGCTGAGGAAAACGGAAAAGACATCACTGGACTCTAGGGACTGGGATCAGGTGGAAGGCAGTAAAGTCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR CAA 90 bp CTATGTGTCCCAGGCTGTCCTAGAACTCACTACATGGACCAGGCTGATGTGGAAGTAGTCTGCAGGCCTTaGTCTTTCTCTTTATGCCCA +
Preference number: 5 (lower is better)
Translates to: LCVPGCPRTHYMDQADVEVVCRP*SFSLCP
Trigger: TGGGCATAAAGAGAAAGACAAAGGCCTGCAGACTAC...TTCCACATCAGCCTGGTCCATGTAGTGAGTTCTAGGACAGCCTGGGACACATAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS-3UTR CAA 90 bp ATCCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGAGATTAAAGGAGTGTGCCAGGGTCTTCCCTTTGTaGCTGAATGGCTTGAAGCTC +
Preference number: 5 (lower is better)
Translates to: IPDLSASASQVLRLKECARVFPL*LNGLKL
Trigger: GAGCTTCAAGCCATTCAGCAACAAAGGGAAGACCCT...GGCACACTCCTTTAATCTCAGGACTTGAGAGGCAGAAGCAGACAGATCTGGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS-3UTR CAA 90 bp AATCCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGAGATTAAAGGAGTGTGCTCTCCCCAGGTGGCCTaGCCAAACTTCTCTGCATAT +
Preference number: 5 (lower is better)
Translates to: NPRSVCFCLSSPEIKGVCSPQVA*PNFSAY
Trigger: ATATGCAGAGAAGTTTGGCAAGGCCACCTGGGGAGA...GCACACTCCTTTAATCTCAGGACTTGAGAGGCAGAAGCAGACAGATCTGGGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR CAA 90 bp TCCCAGGCTGTCCTAGAACTCACTACATGGACCAGGCTGATGTGGAAATCCCAGTTTTTCACTTCTTCCTaGGCCTGTATGGCATCCATC +
Preference number: 5 (lower is better)
Translates to: SQAVLELTTWTRLMWKSQFFTSS*ACMASI
Trigger: GATGGATGCCATACAGGCCAAGGAAGAAGTGAAAAA...CTGGGATTTCCACATCAGCCTGGTCCATGTAGTGAGTTCTAGGACAGCCTGGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS CCA 90 bp TCAGCGATGTCAGGTTCCAGTCATACTCAATGCTGCCAGACTCAATaGACTGGCCATCGACTTTTACCTCGTAAGAAAGATCTGGTCTTA +
Preference number: 5 (lower is better)
Translates to: SAMSGSSHTQCCQTQ*TGHRLLPRKKDLVL
Trigger: TAAGACCAGATCTTTCTTACGAGGTAAAAGTCGATGGCCAGTCCATTGAGTCTGGCAGCATTGAGTATGACTGGAACCTGACATCGCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS-3UTR CAA 90 bp GCTGATGTGGAAATCCCAGATCTGTCTGCTTCTGCCTCTCAAGTCCTGAGATTATTTTTCACTTCTTCCTaGGCCTGTATGGCATCCATC +
Preference number: 5 (lower is better)
Translates to: ADVEIPDLSASASQVLRLFFTSS*ACMASI
Trigger: GATGGATGCCATACAGGCCAAGGAAGAAGTGAAAAA...TAATCTCAGGACTTGAGAGGCAGAAGCAGACAGATCTGGGATTTCCACATCAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS GCA 72 bp ACTCTGAAGTGCCCAAACTGGGAGTCATTGGTGGACTaGACCCAGCGGTTCCTCCAGCGCTCTCCGTCTAGA +
Preference number: 6 (lower is better)
Translates to: TLKCPNWESLVD*TQRFLQRSPSR
Trigger: TCTAGACGGAGAGCGCTGGAGGAACCGCTGGGTGCAGTCCACCAATGACTCCCAGTTTGGGCACTTCAGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS CCA 72 bp GCTCTCCGTCTAGAAACTCCTCCTGGAAGTACACAGTaGCTAGTGCCACGCGCAGCACACAGATGGCCCAGA +
Preference number: 6 (lower is better)
Translates to: ALRLETPPGSTQ*LVPRAAHRWPR
Trigger: TCTGGGCCATCTGTGTGCTGCGCGTGGCACTAGCCACTGTGTACTTCCAGGAGGAGTTTCTAGACGGAGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS CAA 90 bp TTCTGCAGCCAGTCCCCATCCAGCTCACTGTTCCAGTCACTCGGCTaGCTGGCACCCGCATCCAGAAAGTGCTTTTCCCAATCCTGGACT +
Preference number: 6 (lower is better)
Translates to: FCSQSPSSSLFQSLG*LAPASRKCFSQSWT
Trigger: AGTCCAGGATTGGGAAAAGCACTTTCTGGATGCGGGTGCCAGCAAGCCGAGTGACTGGAACAGTGAGCTGGATGGGGACTGGCTGCAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS GCA 72 bp CCCTCAGCTTTCAGGCCATCCTCATATGGTGGCTTCTaGAGCCAGTCCCCATCCAGCTCACTGTTCCAGTCA +
Preference number: 6 (lower is better)
Translates to: PSAFRPSSYGGF*SQSPSSSLFQS
Trigger: TGACTGGAACAGTGAGCTGGATGGGGACTGGCTGCAGAAGCCACCATATGAGGATGGCCTGAAAGCTGAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS CCA 72 bp GTCGATGCCCTCAGCTTTCAGGCCATCCTCATATGGTaGCTTCTGCAGCCAGTCCCCATCCAGCTCACTGTT +
Preference number: 6 (lower is better)
Translates to: VDALSFQAILIW*LLQPVPIQLTV
Trigger: AACAGTGAGCTGGATGGGGACTGGCTGCAGAAGCCACCATATGAGGATGGCCTGAAAGCTGAGGGCATCGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS CCA 72 bp CTTGTCGATGCCCTCAGCTTTCAGGCCATCCTCATATaGTGGCTTCTGCAGCCAGTCCCCATCCAGCTCACT +
Preference number: 6 (lower is better)
Translates to: LVDALSFQAILI*WLLQPVPIQLT
Trigger: AGTGAGCTGGATGGGGACTGGCTGCAGAAGCCACCATATGAGGATGGCCTGAAAGCTGAGGGCATCGACAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS CAA 72 bp CAGTCCCCATCCAGCTCACTGTTCCAGTCACTCGGCTaGCTGGCACCCGCATCCAGAAAGTGCTTTTCCCAA +
Preference number: 6 (lower is better)
Translates to: QSPSSSLFQSLG*LAPASRKCFSQ
Trigger: TTGGGAAAAGCACTTTCTGGATGCGGGTGCCAGCAAGCCGAGTGACTGGAACAGTGAGCTGGATGGGGACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS GCA 72 bp CAGTCACTCGGCTTGCTGGCACCCGCATCCAGAAAGTaGTTTTCCCAATCCTGGACTTTACTGCCTTCCACC +
Preference number: 6 (lower is better)
Translates to: QSLGLLAPASRK*FSQSWTLLPST
Trigger: GGTGGAAGGCAGTAAAGTCCAGGATTGGGAAAAGCACTTTCTGGATGCGGGTGCCAGCAAGCCGAGTGACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS GCA 72 bp AGTCCCCATCCAGCTCACTGTTCCAGTCACTCGGCTTaGTGGCACCCGCATCCAGAAAGTGCTTTTCCCAAT +
Preference number: 6 (lower is better)
Translates to: SPHPAHCSSHSA*WHPHPESAFPN
Trigger: ATTGGGAAAAGCACTTTCTGGATGCGGGTGCCAGCAAGCCGAGTGACTGGAACAGTGAGCTGGATGGGGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS GCA 72 bp GTCTCATCTTCTGGTGGAGCCACACGTCCTTGTCGATaGCCTCAGCTTTCAGGCCATCCTCATATGGTGGCT +
Preference number: 6 (lower is better)
Translates to: VSSSGGATRPCR*PQLSGHPHMVA
Trigger: AGCCACCATATGAGGATGGCCTGAAAGCTGAGGGCATCGACAAGGACGTGTGGCTCCACCAGAAGATGAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS TCA 72 bp ACTGCCTTCCACCTGATCCCAGTCCCTAGAGTCCAGTaGTGTCTTTTCCGTTTTCCTCAGCGATGTCAGGTT +
Preference number: 6 (lower is better)
Translates to: TAFHLIPVPRVQ*CLFRFPQRCQV
Trigger: AACCTGACATCGCTGAGGAAAACGGAAAAGACATCACTGGACTCTAGGGACTGGGATCAGGTGGAAGGCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS TCA 72 bp CCCTGCCTGTGGAATCTGCTGAAATGGTTGTGCCTGTaGAACTTCCCCATCAGCAGATCCTCCTCATCTTCT +
Preference number: 6 (lower is better)
Translates to: PCLWNLLKWLCL*NFPISRSSSSS
Trigger: AGAAGATGAGGAGGATCTGCTGATGGGGAAGTTTCACAGGCACAACCATTTCAGCAGATTCCACAGGCAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS CAA 72 bp TGCTTCACCGTGTACTGGATTACCAGGGTCTTCCCTTaGTTGCTGAATGGCTTGAAGCTCGCAGAGATGGCA +
Preference number: 6 (lower is better)
Translates to: CFTVYWITRVFP*LLNGLKLAEMA
Trigger: TGCCATCTCTGCGAGCTTCAAGCCATTCAGCAACAAAGGGAAGACCCTGGTAATCCAGTACACGGTGAAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS TCA 72 bp TCTCTTTATGCCCATAGAACTTCCCCGATGAGACTCTaGAGTGCCCAAACTGGGAGTCATTGGTGGACTGCA +
Preference number: 6 (lower is better)
Translates to: SLYAHRTSPMRL*SAQTGSHWWTA
Trigger: TGCAGTCCACCAATGACTCCCAGTTTGGGCACTTCAGAGTCTCATCGGGGAAGTTCTATGGGCATAAAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS TCA 72 bp TGCTTTTCCCAATCCTGGACTTTACTGCCTTCCACCTaGTCCCAGTCCCTAGAGTCCAGTGATGTCTTTTCC +
Preference number: 6 (lower is better)
Translates to: CFSQSWTLLPST*SQSLESSDVFS
Trigger: GGAAAAGACATCACTGGACTCTAGGGACTGGGATCAGGTGGAAGGCAGTAAAGTCCAGGATTGGGAAAAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS CCA 72 bp TGGTTCCAGATCTCACCTGCCACAGCTCTAGACCAATaGCGCCAATGTTCTCAAACTCTGAGAGGTCATACT +
Preference number: 6 (lower is better)
Translates to: WFQISPATALDQ*RQCSQTLRGHT
Trigger: AGTATGACCTCTCAGAGTTTGAGAACATTGGCGCCATTGGTCTAGAGCTGTGGCAGGTGAGATCTGGAACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS CAA 72 bp TCCTCATCTTCTTCACGGGCCTTTTTCACTTCTTCCTaGGCCTGTATGGCATCCATCTCCTTTTCTGGACCC +
Preference number: 6 (lower is better)
Translates to: SSSSSRAFFTSS*ACMASISFSGP
Trigger: GGGTCCAGAAAAGGAGATGGATGCCATACAGGCCAAGGAAGAAGTGAAAAAGGCCCGTGAAGAAGATGAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS CAA 90 bp GCATCCATCTCCTTTTCTGGACCCTTAGTTTCTCCCCAGGTGGCCTaGCCAAACTTCTCTGCATATTCTTCATCATCTGTGATCAGGAAG +
Preference number: 6 (lower is better)
Translates to: ASISFSGPLVSPQVA*PNFSAYSSSSVIRK
Trigger: CTTCCTGATCACAGATGATGAAGAATATGCAGAGAAGTTTGGCAAGGCCACCTGGGGAGAAACTAAGGGTCCAGAAAAGGAGATGGATGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS CAA 90 bp AGCAGATCCTCCTCATCTTCTTCACGGGCCTTTTTCACTTCTTCCTaGGCCTGTATGGCATCCATCTCCTTTTCTGGACCCTTAGTTTCT +
Preference number: 6 (lower is better)
Translates to: SRSSSSSSRAFFTSS*ACMASISFSGPLVS
Trigger: AGAAACTAAGGGTCCAGAAAAGGAGATGGATGCCATACAGGCCAAGGAAGAAGTGAAAAAGGCCCGTGAAGAAGATGAGGAGGATCTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS CAA 72 bp CTTGAAGCTCGCAGAGATGGCATAGAATCGGCTGTTTaGGGTAGTCTGCAGGCCTTTGTCTTTCTCTTTATG +
Preference number: 6 (lower is better)
Translates to: LEARRDGIESAV*GSLQAFVFLFM
Trigger: CATAAAGAGAAAGACAAAGGCCTGCAGACTACCCAAAACAGCCGATTCTATGCCATCTCTGCGAGCTTCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12
CDS CAA 72 bp TCCTTTTCTGGACCCTTAGTTTCTCCCCAGGTGGCCTaGCCAAACTTCTCTGCATATTCTTCATCATCTGTG +
Preference number: 6 (lower is better)
Translates to: SFSGPLVSPQVA*PNFSAYSSSSV
Trigger: CACAGATGATGAAGAATATGCAGAGAAGTTTGGCAAGGCCACCTGGGGAGAAACTAAGGGTCCAGAAAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000019876.12
ENSMUST00000109974.2
CDS TCA 72 bp TTTGTCTTTCTCTTTATGCCCATAGAACTTCCCCGATaGGACTCTGAAGTGCCCAAACTGGGAGTCATTGGT +
Preference number: 6 (lower is better)
Translates to: FVFLFMPIELPR*DSEVPKLGVIG
Trigger: ACCAATGACTCCCAGTTTGGGCACTTCAGAGTCTCATCGGGGAAGTTCTATGGGCATAAAGAGAAAGACAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000019876.12