Pregenerated sensors for CALML3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063130Ensembl transcript IDs: ENSMUST00000077698.5, ENSMUST00000222976.2
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATGCCTAAGTACTATGATGTACAAACTGATGGCCACAGGCCACCGTaGTGCAAAGCGTTGCGTGCAGGTGACGCCCCCACCCCACCCTCC | + |
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Preference number: 1 (lower is better) Translates to: MPKYYDVQTDGHRPP*CKALRAGDAPTPPS Trigger: GGAGGGTGGGGTGGGGGCGTCACCTGCACGCAACGCTTTGCATCACGGTGGCCTGTGGCCATCAGTTTGTACATCATAGTACTTAGGCAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| 3UTR TCA 90 bp | ATAGACAAAGTCCCGTGGAGGGGAAGCGCTGTTGTCCAGAGAGCCTaGCCTCAATCATCCAAATCTTCACCATCGCCATCATCCCCACGC | + |
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Preference number: 1 (lower is better) Translates to: IDKVPWRGSAVVQRA*PQSSKSSPSPSSPR Trigger: GCGTGGGGATGATGGCGATGGTGAAGATTTGGATGATTGAGGTCAGGCTCTCTGGACAACAGCGCTTCCCCTCCACGGGACTTTGTCTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| 3UTR TCA 90 bp | TTGGCTTATTATCCATGCAGAGATGGGACATTCTGCTTCAGCTCTTaGGGGCTAGGAGGAGTTGATGCCTGTCTCAGCTGGAGGCATTCT | + |
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Preference number: 1 (lower is better) Translates to: LAYYPCRDGTFCFSS*GLGGVDACLSWRHS Trigger: AGAATGCCTCCAGCTGAGACAGGCATCAACTCCTCCTAGCCCTCAAGAGCTGAAGCAGAATGTCCCATCTCTGCATGGATAATAAGCCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| 3UTR TCA 90 bp | ACACCAATACAAATGGAGATTCCTGCTGGAAGTAGGCCCTGGAGTTaGTCATTTCTGTTGGAAACAGGGCGATGGGGGTGGGGAGAAGAA | + |
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Preference number: 1 (lower is better) Translates to: TPIQMEIPAGSRPWS*SFLLETGRWGWGEE Trigger: TTCTTCTCCCCACCCCCATCGCCCTGTTTCCAACAGAAATGATCAACTCCAGGGCCTACTTCCAGCAGGAATCTCCATTTGTATTGGTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| 3UTR TCA 90 bp | ACCTCAATCATCCAAATCTTCACCATCGCCATCATCCCCACGCCCTaGTGCTTTCCAAATCCAACAGACGCAGTCTTCAGCCAAAGATGC | + |
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Preference number: 1 (lower is better) Translates to: TSIIQIFTIAIIPTP*CFPNPTDAVFSQRC Trigger: GCATCTTTGGCTGAAGACTGCGTCTGTTGGATTTGGAAAGCATCAGGGCGTGGGGATGATGGCGATGGTGAAGATTTGGATGATTGAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| 3UTR TCA 90 bp | CTGTCTCAGCTGGAGGCATTCTCAGTCAAGGGGAAAGAACTGGTGTaGAGCTGCCAGAATAAGATGCAGAAAGTGAAAGGCAGACTTATG | + |
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Preference number: 1 (lower is better) Translates to: LSQLEAFSVKGKELV*SCQNKMQKVKGRLM Trigger: CATAAGTCTGCCTTTCACTTTCTGCATCTTATTCTGGCAGCTTCACACCAGTTCTTTCCCCTTGACTGAGAATGCCTCCAGCTGAGACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077698.5 ENSMUST00000222976.2 |
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| 3UTR-3UTR GCA 90 bp | CATCCAAATCTTCACCATCGCCATCATCCCCACGCCCTGATGCTTTCCAAATCCCGTGATGCAAAGCGTTaGGTGCAGGTGACGCCCCCA | + |
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Preference number: 2 (lower is better) Translates to: HPNLHHRHHPHALMLSKSRDAKR*VQVTPP Trigger: TGGGGGCGTCACCTGCACGCAACGCTTTGCATCACG...GGATTTGGAAAGCATCAGGGCGTGGGGATGATGGCGATGGTGAAGATTTGGATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| 3UTR-3UTR TCA 90 bp | ACACCGCACACACCAATACAAATGGAGATTCCTGCTGGAAGTAGGCCCTGGAGTAGGGCTAGGAGGAGTTaGTGCCTGTCTCAGCTGGAG | + |
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Preference number: 2 (lower is better) Translates to: TPHTPIQMEIPAGSRPWSRARRS*CLSQLE Trigger: CTCCAGCTGAGACAGGCATCAACTCCTCCTAGCCCT...ACTCCAGGGCCTACTTCCAGCAGGAATCTCCATTTGTATTGGTGTGTGCGGTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| 3UTR-3UTR CCA 90 bp | AATCTTCACCATCGCCATCATCCCCACGCCCTGATGCTTTCCAAATCCAACAGAAGCCCAGAAGCCTCATaGGCACCTGGCTGTGCCAGT | + |
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Preference number: 2 (lower is better) Translates to: NLHHRHHPHALMLSKSNRSPEAS*APGCAS Trigger: ACTGGCACAGCCAGGTGCCCATGAGGCTTCTGGGCT...TCTGTTGGATTTGGAAAGCATCAGGGCGTGGGGATGATGGCGATGGTGAAGATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| 3UTR-3UTR TCA 90 bp | GGAGGGGAAGCGCTGTTGTCCAGAGAGCCTGACCTCAATCATCCAAATCTTCACTTCTGCTTCAGCTCTTaGGGGCTAGGAGGAGTTGAT | + |
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Preference number: 2 (lower is better) Translates to: GGEALLSREPDLNHPNLHFCFSS*GLGGVD Trigger: ATCAACTCCTCCTAGCCCTCAAGAGCTGAAGCAGAA...GTGAAGATTTGGATGATTGAGGTCAGGCTCTCTGGACAACAGCGCTTCCCCTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| 3UTR-3UTR TCA 90 bp | CAAACAAACAAACAAACAAACAAGCATAAAACCAGGATCACAGAGGTTTCTTTGAGCGTTGCGTGCAGGTaGCGCCCCCACCCCACCCTC | + |
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Preference number: 2 (lower is better) Translates to: QTNKQTNKHKTRITEVSLSVACR*RPHPTL Trigger: GAGGGTGGGGTGGGGGCGTCACCTGCACGCAACGCT...CAAAGAAACCTCTGTGATCCTGGTTTTATGCTTGTTTGTTTGTTTGTTTGTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| 3UTR-3UTR CCA 90 bp | GAAACAAATAGGAGCCTGGGTCCTTTGGCTTATTATCCATGCAGAGATGGGACAAAGACATCTAAGACCTaGGTAAGATTCTCACCAACC | + |
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Preference number: 2 (lower is better) Translates to: ETNRSLGPLAYYPCRDGTKTSKT*VRFSPT Trigger: GGTTGGTGAGAATCTTACCCAGGTCTTAGATGTCTT...TGTCCCATCTCTGCATGGATAATAAGCCAAAGGACCCAGGCTCCTATTTGTTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| 3UTR TCA 72 bp | TACTATGATGTACAAACTGATGGCCACAGGCCACCGTaGTGCAAAGCGTTGCGTGCAGGTGACGCCCCCACC | + |
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Preference number: 3 (lower is better) Translates to: YYDVQTDGHRPP*CKALRAGDAPT Trigger: GGTGGGGGCGTCACCTGCACGCAACGCTTTGCATCACGGTGGCCTGTGGCCATCAGTTTGTACATCATAGTA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| 3UTR TCA 72 bp | GTCCCGTGGAGGGGAAGCGCTGTTGTCCAGAGAGCCTaGCCTCAATCATCCAAATCTTCACCATCGCCATCA | + |
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Preference number: 3 (lower is better) Translates to: VPWRGSAVVQRA*PQSSKSSPSPS Trigger: TGATGGCGATGGTGAAGATTTGGATGATTGAGGTCAGGCTCTCTGGACAACAGCGCTTCCCCTCCACGGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| 3UTR CCA 72 bp | CACCCTCCCCACACACACCGCACACACCAATACAAATaGAGATTCCTGCTGGAAGTAGGCCCTGGAGTTGAT | + |
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Preference number: 3 (lower is better) Translates to: HPPHTHRTHQYK*RFLLEVGPGVD Trigger: ATCAACTCCAGGGCCTACTTCCAGCAGGAATCTCCATTTGTATTGGTGTGTGCGGTGTGTGTGGGGAGGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| 3UTR CCA 72 bp | GAGCCTGGGTCCTTTGGCTTATTATCCATGCAGAGATaGGACATTCTGCTTCAGCTCTTGAGGGCTAGGAGG | + |
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Preference number: 3 (lower is better) Translates to: EPGSFGLLSMQR*DILLQLLRARR Trigger: CCTCCTAGCCCTCAAGAGCTGAAGCAGAATGTCCCATCTCTGCATGGATAATAAGCCAAAGGACCCAGGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| 3UTR TCA 72 bp | ATCCAAATCTTCACCATCGCCATCATCCCCACGCCCTaGTGCTTTCCAAATCCAACAGACGCAGTCTTCAGC | + |
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Preference number: 3 (lower is better) Translates to: IQIFTIAIIPTP*CFPNPTDAVFS Trigger: GCTGAAGACTGCGTCTGTTGGATTTGGAAAGCATCAGGGCGTGGGGATGATGGCGATGGTGAAGATTTGGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| 3UTR CCA 72 bp | AGAGCCCCACGGAAACAGGGAAAGACATCTAAGACCTaGGTAAGATTCTCACCAACCGGAGGACAGCTATTA | + |
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Preference number: 3 (lower is better) Translates to: RAPRKQGKTSKT*VRFSPTGGQLL Trigger: TAATAGCTGTCCTCCGGTTGGTGAGAATCTTACCCAGGTCTTAGATGTCTTTCCCTGTTTCCGTGGGGCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| 3UTR TCA 72 bp | CTGGAGGCATTCTCAGTCAAGGGGAAAGAACTGGTGTaGAGCTGCCAGAATAAGATGCAGAAAGTGAAAGGC | + |
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Preference number: 3 (lower is better) Translates to: LEAFSVKGKELV*SCQNKMQKVKG Trigger: GCCTTTCACTTTCTGCATCTTATTCTGGCAGCTTCACACCAGTTCTTTCCCCTTGACTGAGAATGCCTCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077698.5 ENSMUST00000222976.2 |
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| 3UTR TCA 72 bp | CAAACAAGCATAAAACCAGGATCACAGAGGTTTCTTTaGTGGAGACAGACAGGAATAGACAAAGTCCCGTGG | + |
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Preference number: 3 (lower is better) Translates to: QTSIKPGSQRFL*WRQTGIDKVPW Trigger: CCACGGGACTTTGTCTATTCCTGTCTGTCTCCATCAAAGAAACCTCTGTGATCCTGGTTTTATGCTTGTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| 3UTR CCA 72 bp | AGGAAAGAAAGGAAACAAATAGGAGCCTGGGTCCTTTaGCTTATTATCCATGCAGAGATGGGACATTCTGCT | + |
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Preference number: 3 (lower is better) Translates to: RKERKQIGAWVL*LIIHAEMGHSA Trigger: AGCAGAATGTCCCATCTCTGCATGGATAATAAGCCAAAGGACCCAGGCTCCTATTTGTTTCCTTTCTTTCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| CDS-3UTR GCA 90 bp | GGAGTTGATGCCTGTCTCAGCTGGAGGCATTCTCAGTCAAGGGGAAAGAACTGGCAATTTCATTCACCATaGCTTGAAGCTCAGCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: GVDACLSWRHSQSRGKNWQFHSP*LEAQPL Trigger: CAGAGGCTGAGCTTCAAGGCATGGTGAATGAAATTG...CCAGTTCTTTCCCCTTGACTGAGAATGCCTCCAGCTGAGACAGGCATCAACTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| CDS-3UTR GCA 90 bp | AGGCATTCTCAGTCAAGGGGAAAGAACTGGTGTGAAGCTGCCAGAATAAGATGCAGCCTCATGGGCACTTaGCCATCACCATCTGTATCT | + |
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Preference number: 4 (lower is better) Translates to: RHSQSRGKNWCEAARIRCSLMGT*PSPSVS Trigger: AGATACAGATGGTGATGGGCAAGTGCCCATGAGGCT...GCATCTTATTCTGGCAGCTTCACACCAGTTCTTTCCCCTTGACTGAGAATGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222976.2 |
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| CDS-3UTR TCA 90 bp | CAGAATAAGATGCAGAAAGTGAAAGGCAGACTTATGAATGCAGTCCATAGAGCCCCAATTCTTGGGTGGTaGTACTGCCATCCCCATCCT | + |
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Preference number: 4 (lower is better) Translates to: QNKMQKVKGRLMNAVHRAPILGW*YCHPHP Trigger: AGGATGGGGATGGCAGTATCACCACCCAAGAATTGG...GGCTCTATGGACTGCATTCATAAGTCTGCCTTTCACTTTCTGCATCTTATTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| 3UTR CAA 72 bp | AAGGAAAGAAAGGAAACAAATAGGAGCCTGGGTCCTTaGGCTTATTATCCATGCAGAGATGGGACATTCTGC | + |
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Preference number: 4 (lower is better) Translates to: KERKETNRSLGP*AYYPCRDGTFC Trigger: GCAGAATGTCCCATCTCTGCATGGATAATAAGCCAAAGGACCCAGGCTCCTATTTGTTTCCTTTCTTTCCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| CDS-3UTR CAA 90 bp | AGACAAAGTCCCGTGGAGGGGAAGCGCTGTTGTCCAGAGAGCCTGACCTCAATCTTTGAACTCGGCGATTaGCTCCTCAGTCAGCTGGTC | + |
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Preference number: 5 (lower is better) Translates to: RQSPVEGKRCCPESLTSIFELGD*LLSQLV Trigger: GACCAGCTGACTGAGGAGCAAATCGCCGAGTTCAAA...GATTGAGGTCAGGCTCTCTGGACAACAGCGCTTCCCCTCCACGGGACTTTGTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| CDS-3UTR CAA 90 bp | ACACCGCACACACCAATACAAATGGAGATTCCTGCTGGAAGTAGGCCCTGGAGTCTGCCATCCCCATCCTaGTCAAACAGAGAGAAAGCC | + |
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Preference number: 5 (lower is better) Translates to: TPHTPIQMEIPAGSRPWSLPSPS*SNREKA Trigger: GGCTTTCTCTCTGTTTGACAAGGATGGGGATGGCAG...ACTCCAGGGCCTACTTCCAGCAGGAATCTCCATTTGTATTGGTGTGTGCGGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| CDS-3UTR CAA 90 bp | TTGATGCCTGTCTCAGCTGGAGGCATTCTCAGTCAAGGGGAAAGAACTGGTGTGAAGCCTCATGGGCACTaGCCCATCACCATCTGTATC | + |
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Preference number: 5 (lower is better) Translates to: LMPVSAGGILSQGERTGVKPHGH*PITICI Trigger: GATACAGATGGTGATGGGCAAGTGCCCATGAGGCTT...CACACCAGTTCTTTCCCCTTGACTGAGAATGCCTCCAGCTGAGACAGGCATCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000222976.2 |
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| CDS-3UTR CAA 90 bp | AGTACTATGATGTACAAACTGATGGCCACAGGCCACCGTGATGCAAAGCGTTGCTTCATTCACCATGCCTaGAAGCTCAGCCTCTGTGGG | + |
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Preference number: 5 (lower is better) Translates to: STMMYKLMATGHRDAKRCFIHHA*KLSLCG Trigger: CCCACAGAGGCTGAGCTTCAAGGCATGGTGAATGAA...GCAACGCTTTGCATCACGGTGGCCTGTGGCCATCAGTTTGTACATCATAGTACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| CDS-3UTR CAA 90 bp | AGGCATTCTCAGTCAAGGGGAAAGAACTGGTGTGAAGCTGCCAGAATAAGATGCGCACTGACGAAGCCATaGCCATCCTTGTCGAACACT | + |
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Preference number: 5 (lower is better) Translates to: RHSQSRGKNWCEAARIRCALTKP*PSLSNT Trigger: AGTGTTCGACAAGGATGGCAATGGCTTCGTCAGTGC...GCATCTTATTCTGGCAGCTTCACACCAGTTCTTTCCCCTTGACTGAGAATGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077698.5 ENSMUST00000222976.2 |
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| CDS-3UTR CAA 90 bp | GGAGTTGATGCCTGTCTCAGCTGGAGGCATTCTCAGTCAAGGGGAAAGAACTGGGTGCCGTTTCCATCTTaGTCAATTTCATTCACCATG | + |
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Preference number: 5 (lower is better) Translates to: GVDACLSWRHSQSRGKNWVPFPS*SISFTM Trigger: CATGGTGAATGAAATTGACAAAGATGGAAACGGCAC...CCAGTTCTTTCCCCTTGACTGAGAATGCCTCCAGCTGAGACAGGCATCAACTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077698.5 ENSMUST00000222976.2 |
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| CDS-3UTR CAA 90 bp | ATGCAGAAAGTGAAAGGCAGACTTATGAATGCAGTCCATAGAGCCCCACGGAAAGCACTGACGAAGCCATaGCCATCCTTGTCGAACACT | + |
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Preference number: 5 (lower is better) Translates to: MQKVKGRLMNAVHRAPRKALTKP*PSLSNT Trigger: AGTGTTCGACAAGGATGGCAATGGCTTCGTCAGTGC...TTTCCGTGGGGCTCTATGGACTGCATTCATAAGTCTGCCTTTCACTTTCTGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077698.5 ENSMUST00000222976.2 |
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| CDS-3UTR CAA 90 bp | TCATCCAAATCTTCACCATCGCCATCATCCCCACGCCCTGATGCTTTCCAAATCGTGCCGTTTCCATCTTaGTCAATTTCATTCACCATG | + |
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Preference number: 5 (lower is better) Translates to: SSKSSPSPSSPRPDAFQIVPFPS*SISFTM Trigger: CATGGTGAATGAAATTGACAAAGATGGAAACGGCAC...GATTTGGAAAGCATCAGGGCGTGGGGATGATGGCGATGGTGAAGATTTGGATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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| CDS CAA 72 bp | CCCAATTCTTGGGTGGTGATACTGCCATCCCCATCCTaGTCAAACAGAGAGAAAGCCTCTTTGAACTCGGCG | + |
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Preference number: 6 (lower is better) Translates to: PNSWVVILPSPS*SNREKASLNSA Trigger: CGCCGAGTTCAAAGAGGCTTTCTCTCTGTTTGACAAGGATGGGGATGGCAGTATCACCACCCAAGAATTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077698.5 |
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