RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CALM4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033765

Ensembl transcript IDs: ENSMUST00000042219.6

Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CACAGCAAGAGGGAGAGGAGAGACACACCCAAGGAAACCATCCTCTaGCCAGAGTCTCAGCAGGCAGAGAGGGGACTAGTGAGCAGCTCC +
Preference number: 1 (lower is better)
Translates to: HSKRERRDTPKETIL*PESQQAERGLVSSS
Trigger: GGAGCTGCTCACTAGTCCCCTCTCTGCCTGCTGAGACTCTGGTCAGAGGATGGTTTCCTTGGGTGTGTCTCTCCTCTCCCTCTTGCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
3UTR-3UTR CCA 90 bp TGGGAGGTAGGAAGCGCCCATTCCACAGCAAGAGGGAGAGGAGAGACACACCCAGTGAGCAGCTCCAGATaGCACAGCATCCAGAGCCAA +
Preference number: 2 (lower is better)
Translates to: WEVGSAHSTARGRGETHPVSSSR*HSIQSQ
Trigger: TTGGCTCTGGATGCTGTGCCATCTGGAGCTGCTCAC...TGGGTGTGTCTCTCCTCTCCCTCTTGCTGTGGAATGGGCGCTTCCTACCTCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
3UTR-3UTR GCA 90 bp ACCCAAGGAAACCATCCTCTGACCAGAGTCTCAGCAGGCAGAGAGGGGACTAGTGCAAGAAGGCACAAGTaGCTGTCAGAGACAGGCAGA +
Preference number: 2 (lower is better)
Translates to: TQGNHPLTRVSAGREGTSARRHK*LSETGR
Trigger: TCTGCCTGTCTCTGACAGGCACTTGTGCCTTCTTGC...ACTAGTCCCCTCTCTGCCTGCTGAGACTCTGGTCAGAGGATGGTTTCCTTGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
3UTR-3UTR TCA 90 bp ACCCAAGGAAACCATCCTCTGACCAGAGTCTCAGCAGGCAGAGAGGGGACTAGTAGTCTTCCTCACTCATaGGATAGTTTCCATACACCA +
Preference number: 2 (lower is better)
Translates to: TQGNHPLTRVSAGREGTSSLPHS*DSFHTP
Trigger: TGGTGTATGGAAACTATCTCATGAGTGAGGAAGACT...ACTAGTCCCCTCTCTGCCTGCTGAGACTCTGGTCAGAGGATGGTTTCCTTGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
3UTR-3UTR CAA 90 bp GCTCCAGATGGCACAGCATCCAGAGCCAATAAAGTCTTCCTCACTCATGAGATACAGATAGACGACGAGTaGGAGCTTGTGACCAGCAGT +
Preference number: 3 (lower is better)
Translates to: APDGTASRANKVFLTHEIQIDDE*ELVTSS
Trigger: ACTGCTGGTCACAAGCTCCAACTCGTCGTCTATCTG...TATCTCATGAGTGAGGAAGACTTTATTGGCTCTGGATGCTGTGCCATCTGGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS-3UTR GCA 90 bp GAGTCTCAGCAGGCAGAGAGGGGACTAGTGAGCAGCTCCAGATGGCACAGCATCAGCCCGCAGCTCCCCTaGTCTGTGCCCTTTCTTGTA +
Preference number: 4 (lower is better)
Translates to: ESQQAERGLVSSSRWHSISPQLP*SVPFLV
Trigger: TACAAGAAAGGGCACAGAGCAGGGGAGCTGCGGGCT...GATGCTGTGCCATCTGGAGCTGCTCACTAGTCCCCTCTCTGCCTGCTGAGACTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS-3UTR CCA 90 bp GAGTCTCAGCAGGCAGAGAGGGGACTAGTGAGCAGCTCCAGATGGCACAGCATCTCCTCCAGCTCCTCCTaGGAAAGGGACTCGCCTAAC +
Preference number: 4 (lower is better)
Translates to: ESQQAERGLVSSSRWHSISSSSS*ERDSPN
Trigger: GTTAGGCGAGTCCCTTTCCCAGGAGGAGCTGGAGGA...GATGCTGTGCCATCTGGAGCTGCTCACTAGTCCCCTCTCTGCCTGCTGAGACTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS-3UTR TCA 90 bp AGAGCCCTGGGAGGTAGGAAGCGCCCATTCCACAGCAAGAGGGAGAGGAGAGACCAAGTTCCTCGACGCTaGTATGGCCATCCTTATTCT +
Preference number: 4 (lower is better)
Translates to: RALGGRKRPFHSKRERRDQVPRR*YGHPYS
Trigger: AGAATAAGGATGGCCATATCAGCGTCGAGGAACTTG...GTCTCTCCTCTCCCTCTTGCTGTGGAATGGGCGCTTCCTACCTCCCAGGGCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS-3UTR TCA 90 bp ACACACCCAAGGAAACCATCCTCTGACCAGAGTCTCAGCAGGCAGAGAGGGGACTGTCCAACTTGGAGATaGGAGCCTTCAGGTCCTTCT +
Preference number: 4 (lower is better)
Translates to: THPRKPSSDQSLSRQRGDCPTWR*EPSGPS
Trigger: AGAAGGACCTGAAGGCTCTCATCTCCAAGTTGGACA...GTCCCCTCTCTGCCTGCTGAGACTCTGGTCAGAGGATGGTTTCCTTGGGTGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS-3UTR GCA 90 bp CTGACCAGAGTCTCAGCAGGCAGAGAGGGGACTAGTGAGCAGCTCCAGATGGCATCTCTGGGAGGTTCTTaGCCAGCTGCTTCATTACAT +
Preference number: 4 (lower is better)
Translates to: LTRVSAGREGTSEQLQMASLGGS*PAASLH
Trigger: ATGTAATGAAGCAGCTGGGCAAGAACCTCCCAGAGA...TGCCATCTGGAGCTGCTCACTAGTCCCCTCTCTGCCTGCTGAGACTCTGGTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS-3UTR GCA 90 bp ACCAGAGTCTCAGCAGGCAGAGAGGGGACTAGTGAGCAGCTCCAGATGGCACAGAGGTTCTTGCCCAGCTaGTTCATTACATCTCCAAGT +
Preference number: 4 (lower is better)
Translates to: TRVSAGREGTSEQLQMAQRFLPS*FITSPS
Trigger: ACTTGGAGATGTAATGAAGCAGCTGGGCAAGAACCT...CTGTGCCATCTGGAGCTGCTCACTAGTCCCCTCTCTGCCTGCTGAGACTCTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS-3UTR GCA 90 bp GCTCCAGATGGCACAGCATCCAGAGCCAATAAAGTCTTCCTCACTCATGAGATAAGCTCCCCTGCTCTGTaGCCTTTCTTGTACTTCTCT +
Preference number: 4 (lower is better)
Translates to: APDGTASRANKVFLTHEISSPAL*PFLYFS
Trigger: AGAGAAGTACAAGAAAGGGCACAGAGCAGGGGAGCT...TATCTCATGAGTGAGGAAGACTTTATTGGCTCTGGATGCTGTGCCATCTGGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS-3UTR CAA 90 bp ACACACCCAAGGAAACCATCCTCTGACCAGAGTCTCAGCAGGCAGAGAGGGGACTTTCACCTTCCCATCTaGGTCCACGTCAGCCACACG +
Preference number: 5 (lower is better)
Translates to: THPRKPSSDQSLSRQRGDFHLPI*VHVSHT
Trigger: CGTGTGGCTGACGTGGACCAAGATGGGAAGGTGAAA...GTCCCCTCTCTGCCTGCTGAGACTCTGGTCAGAGGATGGTTTCCTTGGGTGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS CCA 90 bp TCTTGGTCCACGTCAGCCACACGGATCATGTCCTCCAGCTCCTCCTaGGAAAGGGACTCGCCTAACTTGGACAAGCTTTCCTTGAGCTCA +
Preference number: 5 (lower is better)
Translates to: SWSTSATRIMSSSSS*ERDSPNLDKLSLSS
Trigger: TGAGCTCAAGGAAAGCTTGTCCAAGTTAGGCGAGTCCCTTTCCCAGGAGGAGCTGGAGGACATGATCCGTGTGGCTGACGTGGACCAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS-3UTR CAA 90 bp GTCTCAGCAGGCAGAGAGGGGACTAGTGAGCAGCTCCAGATGGCACAGCATCCATTCTCTGGGAGGTTCTaGCCCAGCTGCTTCATTACA +
Preference number: 5 (lower is better)
Translates to: VSAGREGTSEQLQMAQHPFSGRF*PSCFIT
Trigger: TGTAATGAAGCAGCTGGGCAAGAACCTCCCAGAGAA...TGGATGCTGTGCCATCTGGAGCTGCTCACTAGTCCCCTCTCTGCCTGCTGAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS-3UTR CAA 90 bp CACACCCAAGGAAACCATCCTCTGACCAGAGTCTCAGCAGGCAGAGAGGGGACTCCATCTGTGTCCAACTaGGAGATGAGAGCCTTCAGG +
Preference number: 5 (lower is better)
Translates to: HTQGNHPLTRVSAGREGTPSVSN*EMRAFR
Trigger: CCTGAAGGCTCTCATCTCCAAGTTGGACACAGATGG...AGTCCCCTCTCTGCCTGCTGAGACTCTGGTCAGAGGATGGTTTCCTTGGGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS-3UTR CAA 90 bp ACCCAAGGAAACCATCCTCTGACCAGAGTCTCAGCAGGCAGAGAGGGGACTAGTAGGGACTCGCCTAACTaGGACAAGCTTTCCTTGAGC +
Preference number: 5 (lower is better)
Translates to: TQGNHPLTRVSAGREGTSRDSPN*DKLSLS
Trigger: GCTCAAGGAAAGCTTGTCCAAGTTAGGCGAGTCCCT...ACTAGTCCCCTCTCTGCCTGCTGAGACTCTGGTCAGAGGATGGTTTCCTTGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS GCA 90 bp GAGATGAGAGCCTTCAGGTCCTTCTCTGGGAGGTTCTTGCCCAGCTaGTTCATTACATCTCCAAGTTCCTCGACGCTGATATGGCCATCC +
Preference number: 5 (lower is better)
Translates to: EMRAFRSFSGRFLPS*FITSPSSSTLIWPS
Trigger: GGATGGCCATATCAGCGTCGAGGAACTTGGAGATGTAATGAAGCAGCTGGGCAAGAACCTCCCAGAGAAGGACCTGAAGGCTCTCATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS GCA 90 bp TTCTGGTCAAGGACATTGAACACAGCCCGCAGCTCCCCTGCTCTGTaGCCTTTCTTGTACTTCTCTATGGCTGTCAAGAATTCTTCAAAG +
Preference number: 5 (lower is better)
Translates to: FWSRTLNTARSSPAL*PFLYFSMAVKNSSK
Trigger: CTTTGAAGAATTCTTGACAGCCATAGAGAAGTACAAGAAAGGGCACAGAGCAGGGGAGCTGCGGGCTGTGTTCAATGTCCTTGACCAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS-3UTR CAA 90 bp CAGACTTCTCTTCTTTTTAACACCACCACAAAAGCAGAGCTCCGCAAGAAGGCATTGGACAAGCTTTCCTaGAGCTCATCCACAGTGATG +
Preference number: 5 (lower is better)
Translates to: QTSLLFNTTTKAELRKKALDKLS*SSSTVM
Trigger: CATCACTGTGGATGAGCTCAAGGAAAGCTTGTCCAA...TGCCTTCTTGCGGAGCTCTGCTTTTGTGGTGGTGTTAAAAAGAAGAGAAGTCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS-3UTR CAA 90 bp CAGACTTCTCTTCTTTTTAACACCACCACAAAAGCAGAGCTCCGCAAGAAGGCATTCTTGTCAAACCTATaGAAAGCTGCCTGGAACTCA +
Preference number: 5 (lower is better)
Translates to: QTSLLFNTTTKAELRKKAFLSNL*KAAWNS
Trigger: TGAGTTCCAGGCAGCTTTCAATAGGTTTGACAAGAA...TGCCTTCTTGCGGAGCTCTGCTTTTGTGGTGGTGTTAAAAAGAAGAGAAGTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS GCA 72 bp CTGGTCAAGGACATTGAACACAGCCCGCAGCTCCCCTaGTCTGTGCCCTTTCTTGTACTTCTCTATGGCTGT +
Preference number: 6 (lower is better)
Translates to: LVKDIEHSPQLP*SVPFLVLLYGC
Trigger: ACAGCCATAGAGAAGTACAAGAAAGGGCACAGAGCAGGGGAGCTGCGGGCTGTGTTCAATGTCCTTGACCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS CCA 72 bp AGGCGCACAAACTCCTCATATTTCACCTTCCCATCTTaGTCCACGTCAGCCACACGGATCATGTCCTCCAGC +
Preference number: 6 (lower is better)
Translates to: RRTNSSYFTFPS*STSATRIMSSS
Trigger: GCTGGAGGACATGATCCGTGTGGCTGACGTGGACCAAGATGGGAAGGTGAAATATGAGGAGTTTGTGCGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS GCA 72 bp GCCTTCAGGTCCTTCTCTGGGAGGTTCTTGCCCAGCTaGTTCATTACATCTCCAAGTTCCTCGACGCTGATA +
Preference number: 6 (lower is better)
Translates to: AFRSFSGRFLPS*FITSPSSSTLI
Trigger: TATCAGCGTCGAGGAACTTGGAGATGTAATGAAGCAGCTGGGCAAGAACCTCCCAGAGAAGGACCTGAAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS CCA 72 bp GTCCAACTTGGAGATGAGAGCCTTCAGGTCCTTCTCTaGGAGGTTCTTGCCCAGCTGCTTCATTACATCTCC +
Preference number: 6 (lower is better)
Translates to: VQLGDESLQVLL*EVLAQLLHYIS
Trigger: GGAGATGTAATGAAGCAGCTGGGCAAGAACCTCCCAGAGAAGGACCTGAAGGCTCTCATCTCCAAGTTGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS CAA 72 bp GAGATGAGAGCCTTCAGGTCCTTCTCTGGGAGGTTCTaGCCCAGCTGCTTCATTACATCTCCAAGTTCCTCG +
Preference number: 6 (lower is better)
Translates to: EMRAFRSFSGRF*PSCFITSPSSS
Trigger: CGAGGAACTTGGAGATGTAATGAAGCAGCTGGGCAAGAACCTCCCAGAGAAGGACCTGAAGGCTCTCATCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS GCA 72 bp AGGACATTGAACACAGCCCGCAGCTCCCCTGCTCTGTaGCCTTTCTTGTACTTCTCTATGGCTGTCAAGAAT +
Preference number: 6 (lower is better)
Translates to: RTLNTARSSPAL*PFLYFSMAVKN
Trigger: ATTCTTGACAGCCATAGAGAAGTACAAGAAAGGGCACAGAGCAGGGGAGCTGCGGGCTGTGTTCAATGTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS CAA 72 bp TCAAAGCTGATCTTGCCATCACCATCTGTGTCCAACTaGGAGATGAGAGCCTTCAGGTCCTTCTCTGGGAGG +
Preference number: 6 (lower is better)
Translates to: SKLILPSPSVSN*EMRAFRSFSGR
Trigger: CCTCCCAGAGAAGGACCTGAAGGCTCTCATCTCCAAGTTGGACACAGATGGTGATGGCAAGATCAGCTTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS CAA 90 bp AGTTCCTCGACGCTGATATGGCCATCCTTATTCTTGTCAAACCTATaGAAAGCTGCCTGGAACTCAGCGACCTCCTCCTTAGTAAACCCG +
Preference number: 6 (lower is better)
Translates to: SSSTLIWPSLFLSNL*KAAWNSATSSLVNP
Trigger: CGGGTTTACTAAGGAGGAGGTCGCTGAGTTCCAGGCAGCTTTCAATAGGTTTGACAAGAATAAGGATGGCCATATCAGCGTCGAGGAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS CAA 90 bp AAGAATTCTTCAAAGCTGATCTTGCCATCACCATCTGTGTCCAACTaGGAGATGAGAGCCTTCAGGTCCTTCTCTGGGAGGTTCTTGCCC +
Preference number: 6 (lower is better)
Translates to: KNSSKLILPSPSVSN*EMRAFRSFSGRFLP
Trigger: GGGCAAGAACCTCCCAGAGAAGGACCTGAAGGCTCTCATCTCCAAGTTGGACACAGATGGTGATGGCAAGATCAGCTTTGAAGAATTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS CAA 90 bp AGGACATTGAACACAGCCCGCAGCTCCCCTGCTCTGTGCCCTTTCTaGTACTTCTCTATGGCTGTCAAGAATTCTTCAAAGCTGATCTTG +
Preference number: 6 (lower is better)
Translates to: RTLNTARSSPALCPF*YFSMAVKNSSKLIL
Trigger: CAAGATCAGCTTTGAAGAATTCTTGACAGCCATAGAGAAGTACAAGAAAGGGCACAGAGCAGGGGAGCTGCGGGCTGTGTTCAATGTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS CAA 90 bp ATTACATCTCCAAGTTCCTCGACGCTGATATGGCCATCCTTATTCTaGTCAAACCTATTGAAAGCTGCCTGGAACTCAGCGACCTCCTCC +
Preference number: 6 (lower is better)
Translates to: ITSPSSSTLIWPSLF*SNLLKAAWNSATSS
Trigger: GGAGGAGGTCGCTGAGTTCCAGGCAGCTTTCAATAGGTTTGACAAGAATAAGGATGGCCATATCAGCGTCGAGGAACTTGGAGATGTAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS CAA 72 bp ACGCTGATATGGCCATCCTTATTCTTGTCAAACCTATaGAAAGCTGCCTGGAACTCAGCGACCTCCTCCTTA +
Preference number: 6 (lower is better)
Translates to: TLIWPSLFLSNL*KAAWNSATSSL
Trigger: TAAGGAGGAGGTCGCTGAGTTCCAGGCAGCTTTCAATAGGTTTGACAAGAATAAGGATGGCCATATCAGCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS CAA 90 bp TTCTTGTACTTCTCTATGGCTGTCAAGAATTCTTCAAAGCTGATCTaGCCATCACCATCTGTGTCCAACTTGGAGATGAGAGCCTTCAGG +
Preference number: 6 (lower is better)
Translates to: FLYFSMAVKNSSKLI*PSPSVSNLEMRAFR
Trigger: CCTGAAGGCTCTCATCTCCAAGTTGGACACAGATGGTGATGGCAAGATCAGCTTTGAAGAATTCTTGACAGCCATAGAGAAGTACAAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6
CDS CAA 72 bp TTCTCTATGGCTGTCAAGAATTCTTCAAAGCTGATCTaGCCATCACCATCTGTGTCCAACTTGGAGATGAGA +
Preference number: 6 (lower is better)
Translates to: FSMAVKNSSKLI*PSPSVSNLEMR
Trigger: TCTCATCTCCAAGTTGGACACAGATGGTGATGGCAAGATCAGCTTTGAAGAATTCTTGACAGCCATAGAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000042219.6