Pregenerated sensors for CALM3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019370Ensembl transcript IDs: ENSMUST00000019514.10, ENSMUST00000172594.2, ENSMUST00000173139.2
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCTGGGCTTGCACACAGAGTCACAGGGCTGGGGTGCATGCGACAGTaGCAGGGGACATGCTCCTCCACCTGGCAGAAGGCCTTGCTCCCC | + |
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Preference number: 1 (lower is better) Translates to: AGLAHRVTGLGCMRQ*QGTCSSTWQKALLP Trigger: GGGGAGCAAGGCCTTCTGCCAGGTGGAGGAGCATGTCCCCTGCCACTGTCGCATGCACCCCAGCCCTGTGACTCTGTGTGCAAGCCCAGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR GCA 90 bp | CAGAAAGCGATGCCAAGTCACCACGGAGGGGCAGGAGGTGCCCGCTaGGTGCTCTGCGCGGCGGCCCATAGAAGTGTTTATTGCAGGTTG | + |
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Preference number: 1 (lower is better) Translates to: QKAMPSHHGGAGGAR*VLCAAAHRSVYCRL Trigger: CAACCTGCAATAAACACTTCTATGGGCCGCCGCGCAGAGCACGCAGCGGGCACCTCCTGCCCCTCCGTGGTGACTTGGCATCGCTTTCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR GCA 90 bp | GGTGCCCGCTGCGTGCTCTGCGCGGCGGCCCATAGAAGTGTTTATTaGAGGTTGGTTCTTGTGAGCATGGTGGGGCGCATCTCTCCTCTC | + |
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Preference number: 1 (lower is better) Translates to: GARCVLCAAAHRSVY*RLVLVSMVGRISPL Trigger: GAGAGGAGAGATGCGCCCCACCATGCTCACAAGAACCAACCTGCAATAAACACTTCTATGGGCCGCCGCGCAGAGCACGCAGCGGGCACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR TCA 90 bp | TCTGCGCGGCGGCCCATAGAAGTGTTTATTGCAGGTTGGTTCTTGTaGGCATGGTGGGGCGCATCTCTCCTCTCCCCACCCTTTAGTTGG | + |
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Preference number: 1 (lower is better) Translates to: SARRPIEVFIAGWFL*AWWGASLLSPPFSW Trigger: CCAACTAAAGGGTGGGGAGAGGAGAGATGCGCCCCACCATGCTCACAAGAACCAACCTGCAATAAACACTTCTATGGGCCGCCGCGCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR TCA 90 bp | GAACAGAGAAAGGAAAGGAACCCAGACCGAACTGCCCGCGTTGACTaGCGTGTCCCAGAGGCTAGAGTCAGAAGCAAGGGTGCGGATCAT | + |
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Preference number: 1 (lower is better) Translates to: EQRKERNPDRTARVD*RVPEARVRSKGADH Trigger: ATGATCCGCACCCTTGCTTCTGACTCTAGCCTCTGGGACACGTCAGTCAACGCGGGCAGTTCGGTCTGGGTTCCTTTCCTTTCTCTGTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR TCA 90 bp | CTCAAAGCTGGCAGGTCCCAGCAAAAAGCAACAAGATCACCCTTGTaGATGCATCAGGCCTGGAGACTGGGAATGGAAGGGGAAGGCCAA | + |
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Preference number: 1 (lower is better) Translates to: LKAGRSQQKATRSPL*MHQAWRLGMEGEGQ Trigger: TTGGCCTTCCCCTTCCATTCCCAGTCTCCAGGCCTGATGCATTCACAAGGGTGATCTTGTTGCTTTTTGCTGGGACCTGCCAGCTTTGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172594.2 |
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| 3UTR GCA 90 bp | AAGCTGGCAGGTCCCAGCAAAAAGCAACAAGATCACCCTTGTGAATaGATCAGGCCTGGAGACTGGGAATGGAAGGGGAAGGCCAAAGGA | + |
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Preference number: 1 (lower is better) Translates to: KLAGPSKKQQDHPCE*IRPGDWEWKGKAKG Trigger: TCCTTTGGCCTTCCCCTTCCATTCCCAGTCTCCAGGCCTGATGCATTCACAAGGGTGATCTTGTTGCTTTTTGCTGGGACCTGCCAGCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172594.2 |
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| 3UTR GCA 90 bp | AGGAAGGAGAGAGAGCAGTCATGCAGCTTGGGACAAATCTTTTGGTaGTTTATCAGATTCTCAGTCAATCAATTGCTGTTTGCTAGAACC | + |
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Preference number: 1 (lower is better) Translates to: RKEREQSCSLGQIFW*FIRFSVNQLLFART Trigger: GGTTCTAGCAAACAGCAATTGATTGACTGAGAATCTGATAAAGCACCAAAAGATTTGTCCCAAGCTGCATGACTGCTCTCTCTCCTTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019514.10 ENSMUST00000172594.2 |
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| 3UTR-3UTR CCA 90 bp | AGTGGGGCAGGCAGGGCGAGGGCAGAAAGCGATGCCAAGTCACCACGGAGGGGCCCTGAACTGGGCAGGTaGCTGGGGGTGCCACGGGGG | + |
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Preference number: 2 (lower is better) Translates to: SGAGRARAESDAKSPRRGPELGR*LGVPRG Trigger: CCCCCGTGGCACCCCCAGCCACCTGCCCAGTTCAGG...GCCCCTCCGTGGTGACTTGGCATCGCTTTCTGCCCTCGCCCTGCCTGCCCCACT 70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR-3UTR GCA 90 bp | GAAGCAAGGGTGCGGATCATGCTCTCCGCTGGGGAGTGGGGCAGGCAGGGCGAGCAGGGCTGGGGTGCATaGGACAGTGGCAGGGGACAT | + |
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Preference number: 2 (lower is better) Translates to: EARVRIMLSAGEWGRQGEQGWGA*DSGRGH Trigger: ATGTCCCCTGCCACTGTCGCATGCACCCCAGCCCTG...CTCGCCCTGCCTGCCCCACTCCCCAGCGGAGAGCATGATCCGCACCCTTGCTTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR-3UTR GCA 90 bp | TCCGCAAAGTCCACAGCCTCACGCCTACCTGCCCTTGCCCTCAACTCTAGGCTGCCCCGCCCCACAGGCTaGTGGGCTTGCACACAGAGT | + |
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Preference number: 2 (lower is better) Translates to: SAKSTASRLPALALNSRLPRPTG*WACTQS Trigger: ACTCTGTGTGCAAGCCCAGCAGCCTGTGGGGCGGGG...CAGCCTAGAGTTGAGGGCAAGGGCAGGTAGGCGTGAGGCTGTGGACTTTGCGGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR-3UTR CCA 90 bp | AGATCACCGGCACATTACACAGCGACCATCCCCCACATCCATTCCTGGACCAGCAACTGGGCAGGTGGCTaGGGGTGCCACGGGGGAGCG | + |
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Preference number: 2 (lower is better) Translates to: RSPAHYTATIPHIHSWTSNWAGG*GCHGGA Trigger: CGCTCCCCCGTGGCACCCCCAGCCACCTGCCCAGTT...GCTGGTCCAGGAATGGATGTGGGGGATGGTCGCTGTGTAATGTGCCGGTGATCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000019514.10 ENSMUST00000173139.2 |
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| 3UTR-3UTR CCA 90 bp | TCTTGGCACCCCGCCCCACAGGCTGCTGGGCTTGCACACAGAGTCACAGGGCTGCCTGGAGACTGGGAATaGAAGGGGAAGGCCAAAGGA | + |
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Preference number: 2 (lower is better) Translates to: SWHPAPQAAGLAHRVTGLPGDWE*KGKAKG Trigger: TCCTTTGGCCTTCCCCTTCCATTCCCAGTCTCCAGG...CAGCCCTGTGACTCTGTGTGCAAGCCCAGCAGCCTGTGGGGCGGGGTGCCAAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR CAA 90 bp | CGCTGCGTGCTCTGCGCGGCGGCCCATAGAAGTGTTTATTGCAGGTaGGTTCTTGTGAGCATGGTGGGGCGCATCTCTCCTCTCCCCACC | + |
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Preference number: 2 (lower is better) Translates to: RCVLCAAAHRSVYCR*VLVSMVGRISPLPT Trigger: GGTGGGGAGAGGAGAGATGCGCCCCACCATGCTCACAAGAACCAACCTGCAATAAACACTTCTATGGGCCGCCGCGCAGAGCACGCAGCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR-3UTR TCA 90 bp | AGGGGAAGGCCAAAGGAAGCGGTGAGGGCGTGGAGGGACAGTCAGGAGGAAGGATACGCAGGGGAGTGTTaGAGAGAGGAGAGCGCGAGA | + |
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Preference number: 2 (lower is better) Translates to: RGRPKEAVRAWRDSQEEGYAGEC*REESAR Trigger: TCTCGCGCTCTCCTCTCTTCAACACTCCCCTGCGTA...TCCTTCCTCCTGACTGTCCCTCCACGCCCTCACCGCTTCCTTTGGCCTTCCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019514.10 ENSMUST00000172594.2 |
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| 3UTR-3UTR CCA 90 bp | GGGTGGAGAGTCTCAAAGCTGGCAGGTCCCAGCAAAAAGCAACAAGATCACCCTAACTGGGCAGGTGGCTaGGGGTGCCACGGGGGAGCG | + |
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Preference number: 2 (lower is better) Translates to: GWRVSKLAGPSKKQQDHPNWAGG*GCHGGA Trigger: CGCTCCCCCGTGGCACCCCCAGCCACCTGCCCAGTT...AGGGTGATCTTGTTGCTTTTTGCTGGGACCTGCCAGCTTTGAGACTCTCCACCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR-3UTR CCA 90 bp | TCCGCAAAGTCCACAGCCTCACGCCTACCTGCCCTTGCCCTCAACTCTAGGCTGATCAGGCCTGGAGACTaGGAATGGAAGGGGAAGGCC | + |
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Preference number: 2 (lower is better) Translates to: SAKSTASRLPALALNSRLIRPGD*EWKGKA Trigger: GGCCTTCCCCTTCCATTCCCAGTCTCCAGGCCTGAT...CAGCCTAGAGTTGAGGGCAAGGGCAGGTAGGCGTGAGGCTGTGGACTTTGCGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019514.10 ENSMUST00000172594.2 |
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| 3UTR-3UTR CCA 90 bp | AGATCACCGGCACATTACACAGCGACCATCCCCCACATCCATTCCTGGACCAGCCACGGGGGAGCGGCATaGGATGTTAGCACCAGGTAT | + |
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Preference number: 2 (lower is better) Translates to: RSPAHYTATIPHIHSWTSHGGAA*DVSTRY Trigger: ATACCTGGTGCTAACATCCCATGCCGCTCCCCCGTG...GCTGGTCCAGGAATGGATGTGGGGGATGGTCGCTGTGTAATGTGCCGGTGATCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000019514.10 ENSMUST00000173139.2 |
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| 3UTR-3UTR CCA 90 bp | CTCCTCTCCCCACCCTTTAGTTGGCCCGGCATGTTTAGGACAAAAATCAAAGTTCCTGAACTGGGCAGGTaGCTGGGGGTGCCACGGGGG | + |
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Preference number: 2 (lower is better) Translates to: LLSPPFSWPGMFRTKIKVPELGR*LGVPRG Trigger: CCCCCGTGGCACCCCCAGCCACCTGCCCAGTTCAGG...AACTTTGATTTTTGTCCTAAACATGCCGGGCCAACTAAAGGGTGGGGAGAGGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000019514.10 ENSMUST00000173139.2 |
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| 3UTR-3UTR CCA 90 bp | TCCGCAAAGTCCACAGCCTCACGCCTACCTGCCCTTGCCCTCAACTCTAGGCTGGGAGAGTCTCAAAGCTaGCAGGTCCCAGCAAAAAGC | + |
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Preference number: 2 (lower is better) Translates to: SAKSTASRLPALALNSRLGESQS*QVPAKS Trigger: GCTTTTTGCTGGGACCTGCCAGCTTTGAGACTCTCC...CAGCCTAGAGTTGAGGGCAAGGGCAGGTAGGCGTGAGGCTGTGGACTTTGCGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019514.10 ENSMUST00000172594.2 |
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| 3UTR CAA 90 bp | GATGAGAACAGAGAAAGGAAAGGAACCCAGACCGAACTGCCCGCGTaGACTGACGTGTCCCAGAGGCTAGAGTCAGAAGCAAGGGTGCGG | + |
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Preference number: 2 (lower is better) Translates to: DENRERKGTQTELPA*TDVSQRLESEARVR Trigger: CCGCACCCTTGCTTCTGACTCTAGCCTCTGGGACACGTCAGTCAACGCGGGCAGTTCGGTCTGGGTTCCTTTCCTTTCTCTGTTCTCATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR-3UTR CCA 90 bp | CTCCTCTCCCCACCCTTTAGTTGGCCCGGCATGTTTAGGACAAAAATCAAAGTTACAGCGGGACATGGCTaGAGGGATGAGGAGGGCGAG | + |
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Preference number: 2 (lower is better) Translates to: LLSPPFSWPGMFRTKIKVTAGHG*RDEEGE Trigger: CTCGCCCTCCTCATCCCTCCAGCCATGTCCCGCTGT...AACTTTGATTTTTGTCCTAAACATGCCGGGCCAACTAAAGGGTGGGGAGAGGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019514.10 ENSMUST00000173139.2 |
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| 3UTR-3UTR GCA 90 bp | GGGTGGAGAGTCTCAAAGCTGGCAGGTCCCAGCAAAAAGCAACAAGATCACCCTGGTTCACCTTGTGAATaGATCAGGCCTGGAGACTGG | + |
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Preference number: 2 (lower is better) Translates to: GWRVSKLAGPSKKQQDHPGSPCE*IRPGDW Trigger: CCAGTCTCCAGGCCTGATGCATTCACAAGGTGAACC...AGGGTGATCTTGTTGCTTTTTGCTGGGACCTGCCAGCTTTGAGACTCTCCACCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR-3UTR CCA 90 bp | CTCTCCTCTCCCCACCCTTTAGTTGGCCCGGCATGTTTAGGACAAAAATCAAAGAGAAAGCCAGCCAGATaGTTTCAGAACAGCGGCAGC | + |
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Preference number: 2 (lower is better) Translates to: LSSPHPLVGPACLGQKSKRKPAR*FQNSGS Trigger: GCTGCCGCTGTTCTGAAACCATCTGGCTGGCTTTCT...CTTTGATTTTTGTCCTAAACATGCCGGGCCAACTAAAGGGTGGGGAGAGGAGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR-3UTR GCA 90 bp | CTGGCAGGTCCCAGCAAAAAGCAACAAGATCACCCTTGTGAATGCATCAGGCCTTCTCAGTCAATCAATTaGTGTTTGCTAGAACCGGGT | + |
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Preference number: 2 (lower is better) Translates to: LAGPSKKQQDHPCECIRPSQSIN*CLLEPG Trigger: ACCCGGTTCTAGCAAACAGCAATTGATTGACTGAGA...AGGCCTGATGCATTCACAAGGGTGATCTTGTTGCTTTTTGCTGGGACCTGCCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172594.2 |
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| 3UTR CAA 90 bp | AAATCTTTTGGTGCTTTATCAGATTCTCAGTCAATCAATTGCTGTTaGCTAGAACCGGGTACGCAGGGGAGTGTTGAAGAGAGGAGAGCG | + |
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Preference number: 2 (lower is better) Translates to: KSFGALSDSQSINCC*LEPGTQGSVEERRA Trigger: CGCTCTCCTCTCTTCAACACTCCCCTGCGTACCCGGTTCTAGCAAACAGCAATTGATTGACTGAGAATCTGATAAAGCACCAAAAGATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019514.10 ENSMUST00000172594.2 |
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| 3UTR-3UTR GCA 90 bp | AAGGGGTGGAGAGTCTCAAAGCTGGCAGGTCCCAGCAAAAAGCAACAAGATCACGGACAAATCTTTTGGTaGTTTATCAGATTCTCAGTC | + |
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Preference number: 2 (lower is better) Translates to: KGWRVSKLAGPSKKQQDHGQIFW*FIRFSV Trigger: GACTGAGAATCTGATAAAGCACCAAAAGATTTGTCC...GTGATCTTGTTGCTTTTTGCTGGGACCTGCCAGCTTTGAGACTCTCCACCCCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000019514.10 ENSMUST00000172594.2 |
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| 3UTR-3UTR CAA 90 bp | TCTTGGCACCCCGCCCCACAGGCTGCTGGGCTTGCACACAGAGTCACAGGGCTGACCTGGCAGAAGGCCTaGCTCCCCTCCCCACTGAGC | + |
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Preference number: 3 (lower is better) Translates to: SWHPAPQAAGLAHRVTGLTWQKA*LPSPLS Trigger: GCTCAGTGGGGAGGGGAGCAAGGCCTTCTGCCAGGT...CAGCCCTGTGACTCTGTGTGCAAGCCCAGCAGCCTGTGGGGCGGGGTGCCAAGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR-3UTR CAA 90 bp | GAAGCAAGGGTGCGGATCATGCTCTCCGCTGGGGAGTGGGGCAGGCAGGGCGAGCACAGGCTGCTGGGCTaGCACACAGAGTCACAGGGC | + |
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Preference number: 3 (lower is better) Translates to: EARVRIMLSAGEWGRQGEHRLLG*HTESQG Trigger: GCCCTGTGACTCTGTGTGCAAGCCCAGCAGCCTGTG...CTCGCCCTGCCTGCCCCACTCCCCAGCGGAGAGCATGATCCGCACCCTTGCTTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR GCA 72 bp | GCTGCTGGGCTTGCACACAGAGTCACAGGGCTGGGGTaGATGCGACAGTGGCAGGGGACATGCTCCTCCACC | + |
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Preference number: 3 (lower is better) Translates to: AAGLAHRVTGLG*MRQWQGTCSST Trigger: GGTGGAGGAGCATGTCCCCTGCCACTGTCGCATGCACCCCAGCCCTGTGACTCTGTGTGCAAGCCCAGCAGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR GCA 72 bp | CACCACGGAGGGGCAGGAGGTGCCCGCTGCGTGCTCTaGGCGGCGGCCCATAGAAGTGTTTATTGCAGGTTG | + |
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Preference number: 3 (lower is better) Translates to: HHGGAGGARCVL*AAAHRSVYCRL Trigger: CAACCTGCAATAAACACTTCTATGGGCCGCCGCGCAGAGCACGCAGCGGGCACCTCCTGCCCCTCCGTGGTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR CCA 72 bp | GCACACAGAGTCACAGGGCTGGGGTGCATGCGACAGTaGCAGGGGACATGCTCCTCCACCTGGCAGAAGGCC | + |
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Preference number: 3 (lower is better) Translates to: AHRVTGLGCMRQ*QGTCSSTWQKA Trigger: GGCCTTCTGCCAGGTGGAGGAGCATGTCCCCTGCCACTGTCGCATGCACCCCAGCCCTGTGACTCTGTGTGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR-3UTR CAA 90 bp | TCTTGGCACCCCGCCCCACAGGCTGCTGGGCTTGCACACAGAGTCACAGGGCTGGTACGCAGGGGAGTGTaGAAGAGAGGAGAGCGCGAG | + |
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Preference number: 3 (lower is better) Translates to: SWHPAPQAAGLAHRVTGLVRRGV*KRGERE Trigger: CTCGCGCTCTCCTCTCTTCAACACTCCCCTGCGTAC...CAGCCCTGTGACTCTGTGTGCAAGCCCAGCAGCCTGTGGGGCGGGGTGCCAAGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR GCA 72 bp | ATGCCAAGTCACCACGGAGGGGCAGGAGGTGCCCGCTaGGTGCTCTGCGCGGCGGCCCATAGAAGTGTTTAT | + |
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Preference number: 3 (lower is better) Translates to: MPSHHGGAGGAR*VLCAAAHRSVY Trigger: ATAAACACTTCTATGGGCCGCCGCGCAGAGCACGCAGCGGGCACCTCCTGCCCCTCCGTGGTGACTTGGCAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR TCA 72 bp | GAGGCTCCCCAGGGCAGGGCAATGGGGTTCACCTTGTaGATGCATCAGGCCTGGAGACTGGGAATGGAAGGG | + |
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Preference number: 3 (lower is better) Translates to: EAPQGRAMGFTL*MHQAWRLGMEG Trigger: CCCTTCCATTCCCAGTCTCCAGGCCTGATGCATTCACAAGGTGAACCCCATTGCCCTGCCCTGGGGAGCCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR TCA 72 bp | AGACTGGGAATGGAAGGGGAAGGCCAAAGGAAGCGGTaGGGGCGTGGAGGGACAGTCAGGAGGAAGGAGAGA | + |
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Preference number: 3 (lower is better) Translates to: RLGMEGEGQRKR*GRGGTVRRKER Trigger: TCTCTCCTTCCTCCTGACTGTCCCTCCACGCCCTCACCGCTTCCTTTGGCCTTCCCCTTCCATTCCCAGTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019514.10 ENSMUST00000172594.2 |
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| 3UTR GCA 72 bp | GCCCTTGCCCTCAACTCTAGGCTGGGTCTCCTGATTTaGTCTGTCCCTCCCTCCCTTAAGGCTGGTGCCAAG | + |
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Preference number: 3 (lower is better) Translates to: ALALNSRLGLLI*SVPPSLKAGAK Trigger: CTTGGCACCAGCCTTAAGGGAGGGAGGGACAGAGCAAATCAGGAGACCCAGCCTAGAGTTGAGGGCAAGGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019514.10 ENSMUST00000172594.2 |
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| 3UTR CCA 72 bp | AATGGAAGGGGAAGGCCAAAGGAAGCGGTGAGGGCGTaGAGGGACAGTCAGGAGGAAGGAGAGAGAGCAGTC | + |
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Preference number: 3 (lower is better) Translates to: NGRGRPKEAVRA*RDSQEEGERAV Trigger: GACTGCTCTCTCTCCTTCCTCCTGACTGTCCCTCCACGCCCTCACCGCTTCCTTTGGCCTTCCCCTTCCATT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019514.10 ENSMUST00000172594.2 |
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| 3UTR-3UTR CAA 90 bp | CCGCTGGGGAGTGGGGCAGGCAGGGCGAGGGCAGAAAGCGATGCCAAGTCACCAAGTGTTTATTGCAGGTaGGTTCTTGTGAGCATGGTG | + |
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Preference number: 3 (lower is better) Translates to: PLGSGAGRARAESDAKSPSVYCR*VLVSMV Trigger: CACCATGCTCACAAGAACCAACCTGCAATAAACACT...TGGTGACTTGGCATCGCTTTCTGCCCTCGCCCTGCCTGCCCCACTCCCCAGCGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR-3UTR CAA 90 bp | AAGGGGAAGGCCAAAGGAAGCGGTGAGGGCGTGGAGGGACAGTCAGGAGGAAGGTCAATCAATTGCTGTTaGCTAGAACCGGGTACGCAG | + |
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Preference number: 3 (lower is better) Translates to: KGKAKGSGEGVEGQSGGRSINCC*LEPGTQ Trigger: CTGCGTACCCGGTTCTAGCAAACAGCAATTGATTGA...CCTTCCTCCTGACTGTCCCTCCACGCCCTCACCGCTTCCTTTGGCCTTCCCCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019514.10 ENSMUST00000172594.2 |
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| 3UTR TCA 72 bp | CGGCCCATAGAAGTGTTTATTGCAGGTTGGTTCTTGTaGGCATGGTGGGGCGCATCTCTCCTCTCCCCACCC | + |
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Preference number: 3 (lower is better) Translates to: RPIEVFIAGWFL*AWWGASLLSPP Trigger: GGGTGGGGAGAGGAGAGATGCGCCCCACCATGCTCACAAGAACCAACCTGCAATAAACACTTCTATGGGCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR TCA 72 bp | AAGGAAAGGAACCCAGACCGAACTGCCCGCGTTGACTaGCGTGTCCCAGAGGCTAGAGTCAGAAGCAAGGGT | + |
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Preference number: 3 (lower is better) Translates to: KERNPDRTARVD*RVPEARVRSKG Trigger: ACCCTTGCTTCTGACTCTAGCCTCTGGGACACGTCAGTCAACGCGGGCAGTTCGGTCTGGGTTCCTTTCCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR TCA 72 bp | GGCAGGTCCCAGCAAAAAGCAACAAGATCACCCTTGTaGATGCATCAGGCCTGGAGACTGGGAATGGAAGGG | + |
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Preference number: 3 (lower is better) Translates to: GRSQQKATRSPL*MHQAWRLGMEG Trigger: CCCTTCCATTCCCAGTCTCCAGGCCTGATGCATTCACAAGGGTGATCTTGTTGCTTTTTGCTGGGACCTGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000172594.2 |
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| 3UTR CCA 72 bp | TTAGCACCAGGTATTTACAGAACAGCGGGACATGGCTaGAGGGATGAGGAGGGCGAGTATGATCGGCAGCAT | + |
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Preference number: 3 (lower is better) Translates to: LAPGIYRTAGHG*RDEEGEYDRQH Trigger: ATGCTGCCGATCATACTCGCCCTCCTCATCCCTCCAGCCATGTCCCGCTGTTCTGTAAATACCTGGTGCTAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019514.10 ENSMUST00000173139.2 |
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| 3UTR CCA 72 bp | TTAAGGCTGGTGCCAAGGGGTGGAGAGTCTCAAAGCTaGCAGGTCCCAGCAAAAAGCAACAAGATCACCCTG | + |
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Preference number: 3 (lower is better) Translates to: LRLVPRGGESQS*QVPAKSNKITL Trigger: CAGGGTGATCTTGTTGCTTTTTGCTGGGACCTGCCAGCTTTGAGACTCTCCACCCCTTGGCACCAGCCTTAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR GCA 72 bp | GGTCCCAGCAAAAAGCAACAAGATCACCCTTGTGAATaGATCAGGCCTGGAGACTGGGAATGGAAGGGGAAG | + |
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Preference number: 3 (lower is better) Translates to: GPSKKQQDHPCE*IRPGDWEWKGK Trigger: CTTCCCCTTCCATTCCCAGTCTCCAGGCCTGATGCATTCACAAGGGTGATCTTGTTGCTTTTTGCTGGGACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172594.2 |
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| 3UTR CCA 72 bp | TTAAGGCTGGTGCCAAGGGGTGGAGAGTCTCAAAGCTaGCAGGTCCCAGCAAAAAGCAACAAGATCACCCTT | + |
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Preference number: 3 (lower is better) Translates to: LRLVPRGGESQS*QVPAKSNKITL Trigger: AAGGGTGATCTTGTTGCTTTTTGCTGGGACCTGCCAGCTTTGAGACTCTCCACCCCTTGGCACCAGCCTTAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172594.2 |
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| 3UTR-3UTR CAA 90 bp | GGGTGGAGAGTCTCAAAGCTGGCAGGTCCCAGCAAAAAGCAACAAGATCACCCTGAGCAGTCATGCAGCTaGGGACAAATCTTTTGGTGC | + |
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Preference number: 3 (lower is better) Translates to: GWRVSKLAGPSKKQQDHPEQSCS*GQIFWC Trigger: GCACCAAAAGATTTGTCCCAAGCTGCATGACTGCTC...AGGGTGATCTTGTTGCTTTTTGCTGGGACCTGCCAGCTTTGAGACTCTCCACCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000019514.10 ENSMUST00000172594.2 |
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| 3UTR-3UTR CAA 90 bp | GAGCAGTCATGCAGCTTGGGACAAATCTTTTGGTGCTTTATCAGATTCTCAGTCGTACGCAGGGGAGTGTaGAAGAGAGGAGAGCGCGAG | + |
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Preference number: 3 (lower is better) Translates to: EQSCSLGQIFWCFIRFSVVRRGV*KRGERE Trigger: CTCGCGCTCTCCTCTCTTCAACACTCCCCTGCGTAC...GACTGAGAATCTGATAAAGCACCAAAAGATTTGTCCCAAGCTGCATGACTGCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019514.10 ENSMUST00000172594.2 |
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| 3UTR-3UTR CAA 90 bp | TCCTCTCCCCACCCTTTAGTTGGCCCGGCATGTTTAGGACAAAAATCAAAGTTTTCAATCAATTGCTGTTaGCTAGAACCGGGTACGCAG | + |
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Preference number: 3 (lower is better) Translates to: SSPHPLVGPACLGQKSKFSINCC*LEPGTQ Trigger: CTGCGTACCCGGTTCTAGCAAACAGCAATTGATTGA...AAACTTTGATTTTTGTCCTAAACATGCCGGGCCAACTAAAGGGTGGGGAGAGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR-3UTR CAA 90 bp | TCCTCTCCCCACCCTTTAGTTGGCCCGGCATGTTTAGGACAAAAATCAAAGTTTTTCTCAGTCAATCAATaGCTGTTTGCTAGAACCGGG | + |
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Preference number: 3 (lower is better) Translates to: SSPHPLVGPACLGQKSKFFSVNQ*LFARTG Trigger: CCCGGTTCTAGCAAACAGCAATTGATTGACTGAGAA...AAACTTTGATTTTTGTCCTAAACATGCCGGGCCAACTAAAGGGTGGGGAGAGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| CDS-3UTR TCA 90 bp | AGGGGAAGGCCAAAGGAAGCGGTGAGGGCGTGGAGGGACAGTCAGGAGGAAGGACCCCCAGGTTCGTCATaGCGTGACGCAGCTCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: RGRPKEAVRAWRDSQEEGPPGSS*RDAARQ Trigger: CTGCCGAGCTGCGTCACGTCATGACGAACCTGGGGG...TCCTTCCTCCTGACTGTCCCTCCACGCCCTCACCGCTTCCTTTGGCCTTCCCCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| CDS-3UTR TCA 90 bp | CACCGGCACATTACACAGCGACCATCCCCCACATCCATTCCTGGACCAGCCCTGCCCCCAGGTTCGTCATaGCGTGACGCAGCTCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: HRHITQRPSPTSIPGPALPPGSS*RDAARQ Trigger: CTGCCGAGCTGCGTCACGTCATGACGAACCTGGGGG...CAGGGCTGGTCCAGGAATGGATGTGGGGGATGGTCGCTGTGTAATGTGCCGGTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000019514.10 ENSMUST00000173139.2 |
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| CDS-3UTR GCA 90 bp | AGTGGGGCAGGCAGGGCGAGGGCAGAAAGCGATGCCAAGTCACCACGGAGGGGCGGCTTCCTTGAACTCTaGAATCTGTTCCTCAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: SGAGRARAESDAKSPRRGGFLEL*NLFLSQ Trigger: CTGACTGAGGAACAGATTGCAGAGTTCAAGGAAGCC...GCCCCTCCGTGGTGACTTGGCATCGCTTTCTGCCCTCGCCCTGCCTGCCCCACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| CDS-3UTR CCA 90 bp | TTAGCACCAGGTATTTACAGAACAGCGGGACATGGCTGGAGGGATGAGGAGGGCGCAGCTCCGCCTCAGTaGGGTTCTGTCCCAGCGATC | + |
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Preference number: 4 (lower is better) Translates to: LAPGIYRTAGHGWRDEEGAAPPQ*GSVPAI Trigger: GATCGCTGGGACAGAACCCCACTGAGGCGGAGCTGC...GCCCTCCTCATCCCTCCAGCCATGTCCCGCTGTTCTGTAAATACCTGGTGCTAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR CAA 72 bp | CTCTGCGCGGCGGCCCATAGAAGTGTTTATTGCAGGTaGGTTCTTGTGAGCATGGTGGGGCGCATCTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: LCAAAHRSVYCR*VLVSMVGRISP Trigger: AGGAGAGATGCGCCCCACCATGCTCACAAGAACCAACCTGCAATAAACACTTCTATGGGCCGCCGCGCAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| CDS-3UTR CCA 90 bp | TCCGCAAAGTCCACAGCCTCACGCCTACCTGCCCTTGCCCTCAACTCTAGGCTGACTCTGGGAAGTCAATaGTCCCATTGCCATCAGCAT | + |
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Preference number: 4 (lower is better) Translates to: SAKSTASRLPALALNSRLTLGSQ*SHCHQH Trigger: ATGCTGATGGCAATGGGACCATTGACTTCCCAGAGT...CAGCCTAGAGTTGAGGGCAAGGGCAGGTAGGCGTGAGGCTGTGGACTTTGCGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| 3UTR CAA 72 bp | AGAGAAAGGAAAGGAACCCAGACCGAACTGCCCGCGTaGACTGACGTGTCCCAGAGGCTAGAGTCAGAAGCA | + |
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Preference number: 4 (lower is better) Translates to: RERKGTQTELPA*TDVSQRLESEA Trigger: TGCTTCTGACTCTAGCCTCTGGGACACGTCAGTCAACGCGGGCAGTTCGGTCTGGGTTCCTTTCCTTTCTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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| CDS-3UTR CCA 90 bp | CCAGGTATTTACAGAACAGCGGGACATGGCTGGAGGGATGAGGAGGGCGAGTATAGAAAGCCAGCCAGATaGTTTCAGAACAGCGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: PGIYRTAGHGWRDEEGEYRKPAR*FQNSGS Trigger: GCTGCCGCTGTTCTGAAACCATCTGGCTGGCTTTCT...ATACTCGCCCTCCTCATCCCTCCAGCCATGTCCCGCTGTTCTGTAAATACCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173139.2 |
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| CDS-3UTR TCA 90 bp | AAAAGCAACAAGATCACCCTTGTGAATGCATCAGGCCTGGAGACTGGGAATGGACAAACTCTTCATAATTaGCCTGGCCATCTCCATCAA | + |
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Preference number: 4 (lower is better) Translates to: KSNKITLVNASGLETGNGQTLHN*PGHLHQ Trigger: TTGATGGAGATGGCCAGGTCAATTATGAAGAGTTTG...TCCATTCCCAGTCTCCAGGCCTGATGCATTCACAAGGGTGATCTTGTTGCTTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172594.2 |
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| CDS-3UTR TCA 90 bp | GAGCAGTCATGCAGCTTGGGACAAATCTTTTGGTGCTTTATCAGATTCTCAGTCCAAACTCTTCATAATTaGCCTGGCCATCTCCATCAA | + |
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Preference number: 4 (lower is better) Translates to: EQSCSLGQIFWCFIRFSVQTLHN*PGHLHQ Trigger: TTGATGGAGATGGCCAGGTCAATTATGAAGAGTTTG...GACTGAGAATCTGATAAAGCACCAAAAGATTTGTCCCAAGCTGCATGACTGCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019514.10 ENSMUST00000172594.2 |
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| CDS-3UTR CAA 90 bp | GGGCGAGGGCAGAAAGCGATGCCAAGTCACCACGGAGGGGCAGGAGGTGCCCGCAAGTCAATGGTCCCATaGCCATCAGCATCCACCTCA | + |
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Preference number: 5 (lower is better) Translates to: GRGQKAMPSHHGGAGGARKSMVP*PSASTS Trigger: TGAGGTGGATGCTGATGGCAATGGGACCATTGACTT...GCGGGCACCTCCTGCCCCTCCGTGGTGACTTGGCATCGCTTTCTGCCCTCGCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019514.10 |
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