RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CALHM6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046031

Ensembl transcript IDs: ENSMUST00000062784.8

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp ACGGCCACCCAGGTGAGGGGCGCGAATGCCGCGGTCATGCTGAGCTaGGCGCACACGAACGCGCTGCGCAACCCCGAACTGAATCGCGCG +
Preference number: 5 (lower is better)
Translates to: TATQVRGANAAVMLS*AHTNALRNPELNRA
Trigger: CGCGCGATTCAGTTCGGGGTTGCGCAGCGCGTTCGTGTGCGCCCAGCTCAGCATGACCGCGGCATTCGCGCCCCTCACCTGGGTGGCCGT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS TCA 90 bp GGTCGCGGCCCTTGCACAGGTATGGCGCCAAGCGCGCGCTCCCGCTaGCAGCACATTGGTAGAAAGAGCCCTCGAGCAGCGCCACGGCCA +
Preference number: 5 (lower is better)
Translates to: GRGPCTGMAPSARSR*QHIGRKSPRAAPRP
Trigger: TGGCCGTGGCGCTGCTCGAGGGCTCTTTCTACCAATGTGCTGTCAGCGGGAGCGCGCGCTTGGCGCCATACCTGTGCAAGGGCCGCGACC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS GCA 90 bp GCACCAGCAGGAACACCAGGCCGTAGGGCAGGTTCCAGGTGGCAGTaGAGGGACACTGGAACACCACTGAGGAGAAGATCTTCTCCCCAC +
Preference number: 5 (lower is better)
Translates to: APAGTPGRRAGSRWQ*RDTGTPLRRRSSPH
Trigger: GTGGGGAGAAGATCTTCTCCTCAGTGGTGTTCCAGTGTCCCTGCACTGCCACCTGGAACCTGCCCTACGGCCTGGTGTTCCTGCTGGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS CCA 90 bp GGGCAGGCACCAGCAGGAACACCAGGCCGTAGGGCAGGTTCCAGGTaGCAGTGCAGGGACACTGGAACACCACTGAGGAGAAGATCTTCT +
Preference number: 5 (lower is better)
Translates to: GQAPAGTPGRRAGSR*QCRDTGTPLRRRSS
Trigger: AGAAGATCTTCTCCTCAGTGGTGTTCCAGTGTCCCTGCACTGCCACCTGGAACCTGCCCTACGGCCTGGTGTTCCTGCTGGTGCCTGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS GCA 90 bp GTTAGTCATGGACATGTCATCTACAAAGCCAAGGGCAGGGATCACTaGATCTCCTTCCACAGAGCGGACACTGCCGCTCATTTCTTCTCT +
Preference number: 5 (lower is better)
Translates to: VSHGHVIYKAKGRDH*ISFHRADTAAHFFS
Trigger: AGAGAAGAAATGAGCGGCAGTGTCCGCTCTGTGGAAGGAGATGCAGTGATCCCTGCCCTTGGCTTTGTAGATGACATGTCCATGACTAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS TCA 90 bp CAGCATGCTGTAGAACTGGTTCTTGGGATTGAATGTGTACAACGCTaGGATTTCCTGCCAGTCTTTACTGCTTGGAGTGTTGCATTCCTT +
Preference number: 5 (lower is better)
Translates to: QHAVELVLGIECVQR*DFLPVFTAWSVAFL
Trigger: AAGGAATGCAACACTCCAAGCAGTAAAGACTGGCAGGAAATCTCAGCGTTGTACACATTCAATCCCAAGAACCAGTTCTACAGCATGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS GCA 90 bp AAAGAAACATCTAACATTCTCTTCGGCCAACTGTGTCGCATTCTCTaGAGCTTGATTTTGAAGAATCTGCTTCTCCTTTTCCCAATAGAT +
Preference number: 5 (lower is better)
Translates to: KETSNILFGQLCRIL*SLILKNLLLLFPID
Trigger: ATCTATTGGGAAAAGGAGAAGCAGATTCTTCAAAATCAAGCTGCAGAGAATGCGACACAGTTGGCCGAAGAGAATGTTAGATGTTTCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS CCA 72 bp CAGGTGAGGGGCGCGAATGCCGCGGTCATGCTGAGCTaGGCGCACACGAACGCGCTGCGCAACCCCGAACTG +
Preference number: 6 (lower is better)
Translates to: QVRGANAAVMLS*AHTNALRNPEL
Trigger: CAGTTCGGGGTTGCGCAGCGCGTTCGTGTGCGCCCAGCTCAGCATGACCGCGGCATTCGCGCCCCTCACCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS CAA 72 bp GTATGGCGCCAAGCGCGCGCTCCCGCTGACAGCACATaGGTAGAAAGAGCCCTCGAGCAGCGCCACGGCCAC +
Preference number: 6 (lower is better)
Translates to: VWRQARAPADST*VERALEQRHGH
Trigger: GTGGCCGTGGCGCTGCTCGAGGGCTCTTTCTACCAATGTGCTGTCAGCGGGAGCGCGCGCTTGGCGCCATAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS CAA 90 bp CTTGCACAGGTATGGCGCCAAGCGCGCGCTCCCGCTGACAGCACATaGGTAGAAAGAGCCCTCGAGCAGCGCCACGGCCACCCAGGTGAG +
Preference number: 6 (lower is better)
Translates to: LAQVWRQARAPADST*VERALEQRHGHPGE
Trigger: CTCACCTGGGTGGCCGTGGCGCTGCTCGAGGGCTCTTTCTACCAATGTGCTGTCAGCGGGAGCGCGCGCTTGGCGCCATACCTGTGCAAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS GCA 72 bp TCCTGCATTTCCACCTTCTGCTTGTTGCAGGGAGCCTaGGGTAGCGTGGCATTGCAGTTGGGGTCGCGGCCC +
Preference number: 6 (lower is better)
Translates to: SCISTFCLLQGA*GSVALQLGSRP
Trigger: GGGCCGCGACCCCAACTGCAATGCCACGCTACCGCAGGCTCCCTGCAACAAGCAGAAGGTGGAAATGCAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS CCA 72 bp CCAGCAGGAACACCAGGCCGTAGGGCAGGTTCCAGGTaGCAGTGCAGGGACACTGGAACACCACTGAGGAGA +
Preference number: 6 (lower is better)
Translates to: PAGTPGRRAGSR*QCRDTGTPLRR
Trigger: TCTCCTCAGTGGTGTTCCAGTGTCCCTGCACTGCCACCTGGAACCTGCCCTACGGCCTGGTGTTCCTGCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS GCA 72 bp GGCTCAGGATCTCCTGCATTTCCACCTTCTGCTTGTTaGAGGGAGCCTGCGGTAGCGTGGCATTGCAGTTGG +
Preference number: 6 (lower is better)
Translates to: GSGSPAFPPSAC*REPAVAWHCSW
Trigger: CCAACTGCAATGCCACGCTACCGCAGGCTCCCTGCAACAAGCAGAAGGTGGAAATGCAGGAGATCCTGAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS CAA 72 bp AGCTGGCTCAGGATCTCCTGCATTTCCACCTTCTGCTaGTTGCAGGGAGCCTGCGGTAGCGTGGCATTGCAG +
Preference number: 6 (lower is better)
Translates to: SWLRISCISTFC*LQGACGSVALQ
Trigger: CTGCAATGCCACGCTACCGCAGGCTCCCTGCAACAAGCAGAAGGTGGAAATGCAGGAGATCCTGAGCCAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS GCA 72 bp TTGAGCTGGCTCAGGATCTCCTGCATTTCCACCTTCTaGTTGTTGCAGGGAGCCTGCGGTAGCGTGGCATTG +
Preference number: 6 (lower is better)
Translates to: LSWLRISCISTF*LLQGACGSVAL
Trigger: CAATGCCACGCTACCGCAGGCTCCCTGCAACAAGCAGAAGGTGGAAATGCAGGAGATCCTGAGCCAGCTCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS CAA 72 bp TGGCTCAGGATCTCCTGCATTTCCACCTTCTGCTTGTaGCAGGGAGCCTGCGGTAGCGTGGCATTGCAGTTG +
Preference number: 6 (lower is better)
Translates to: WLRISCISTFCL*QGACGSVALQL
Trigger: CAACTGCAATGCCACGCTACCGCAGGCTCCCTGCAACAAGCAGAAGGTGGAAATGCAGGAGATCCTGAGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS TCA 72 bp CTATCAGAATCCAACCGAACACCTGAGACTGAGCCTTaGGCTGGCTCAGGATCTCCTGCATTTCCACCTTCT +
Preference number: 6 (lower is better)
Translates to: LSESNRTPETEP*AGSGSPAFPPS
Trigger: AGAAGGTGGAAATGCAGGAGATCCTGAGCCAGCTCAAGGCTCAGTCTCAGGTGTTCGGTTGGATTCTGATAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS GCA 72 bp ATGTGTACAACGCTGAGATTTCCTGCCAGTCTTTACTaGTTGGAGTGTTGCATTCCTTCGGCTTCGAGCACT +
Preference number: 6 (lower is better)
Translates to: MCTTLRFPASLY*LECCIPSASST
Trigger: AGTGCTCGAAGCCGAAGGAATGCAACACTCCAAGCAGTAAAGACTGGCAGGAAATCTCAGCGTTGTACACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS GCA 72 bp CTGAGATTTCCTGCCAGTCTTTACTGCTTGGAGTGTTaGATTCCTTCGGCTTCGAGCACTCAAAGAAACATC +
Preference number: 6 (lower is better)
Translates to: LRFPASLYCLEC*IPSASSTQRNI
Trigger: GATGTTTCTTTGAGTGCTCGAAGCCGAAGGAATGCAACACTCCAAGCAGTAAAGACTGGCAGGAAATCTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS CAA 72 bp GCTGAGATTTCCTGCCAGTCTTTACTGCTTGGAGTGTaGCATTCCTTCGGCTTCGAGCACTCAAAGAAACAT +
Preference number: 6 (lower is better)
Translates to: AEISCQSLLLGV*HSFGFEHSKKH
Trigger: ATGTTTCTTTGAGTGCTCGAAGCCGAAGGAATGCAACACTCCAAGCAGTAAAGACTGGCAGGAAATCTCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS CAA 90 bp GTGTACAACGCTGAGATTTCCTGCCAGTCTTTACTGCTTGGAGTGTaGCATTCCTTCGGCTTCGAGCACTCAAAGAAACATCTAACATTC +
Preference number: 6 (lower is better)
Translates to: VYNAEISCQSLLLGV*HSFGFEHSKKHLTF
Trigger: GAATGTTAGATGTTTCTTTGAGTGCTCGAAGCCGAAGGAATGCAACACTCCAAGCAGTAAAGACTGGCAGGAAATCTCAGCGTTGTACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS TCA 72 bp ACTTGTGCAGCATGCTGTAGAACTGGTTCTTGGGATTaGATGTGTACAACGCTGAGATTTCCTGCCAGTCTT +
Preference number: 6 (lower is better)
Translates to: TCAACCRTGSWD*MCTTLRFPASL
Trigger: AAGACTGGCAGGAAATCTCAGCGTTGTACACATTCAATCCCAAGAACCAGTTCTACAGCATGCTGCACAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS TCA 72 bp GTAGAACTGGTTCTTGGGATTGAATGTGTACAACGCTaGGATTTCCTGCCAGTCTTTACTGCTTGGAGTGTT +
Preference number: 6 (lower is better)
Translates to: VELVLGIECVQR*DFLPVFTAWSV
Trigger: AACACTCCAAGCAGTAAAGACTGGCAGGAAATCTCAGCGTTGTACACATTCAATCCCAAGAACCAGTTCTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS GCA 72 bp TTCTTGGGATTGAATGTGTACAACGCTGAGATTTCCTaGCAGTCTTTACTGCTTGGAGTGTTGCATTCCTTC +
Preference number: 6 (lower is better)
Translates to: FLGLNVYNAEIS*QSLLLGVLHSF
Trigger: GAAGGAATGCAACACTCCAAGCAGTAAAGACTGGCAGGAAATCTCAGCGTTGTACACATTCAATCCCAAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8
CDS GCA 72 bp TCTAACATTCTCTTCGGCCAACTGTGTCGCATTCTCTaGAGCTTGATTTTGAAGAATCTGCTTCTCCTTTTC +
Preference number: 6 (lower is better)
Translates to: SNILFGQLCRIL*SLILKNLLLLF
Trigger: GAAAAGGAGAAGCAGATTCTTCAAAATCAAGCTGCAGAGAATGCGACACAGTTGGCCGAAGAGAATGTTAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062784.8