RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CALHM4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039508

Ensembl transcript IDs: ENSMUST00000048052.7, ENSMUST00000218239.2

Found 129 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGAAGCTATAGGGACCCTGTGAGGTGTCACCCACACATAGAAGATTaGGTACAGAGATTTCTCTCCAGTCCTGACACGAAGGGATACGAA +
Preference number: 1 (lower is better)
Translates to: GSYRDPVRCHPHIED*VQRFLSSPDTKGYE
Trigger: TTCGTATCCCTTCGTGTCAGGACTGGAGAGAAATCTCTGTACCCAATCTTCTATGTGTGGGTGACACCTCACAGGGTCCCTATAGCTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR TCA 90 bp TCACCCACACATAGAAGATTGGGTACAGAGATTTCTCTCCAGTCCTaGCACGAAGGGATACGAATATGTTTGATGTCTTCACTCCCAGGA +
Preference number: 1 (lower is better)
Translates to: SPTHRRLGTEISLQS*HEGIRICLMSSLPG
Trigger: TCCTGGGAGTGAAGACATCAAACATATTCGTATCCCTTCGTGTCAGGACTGGAGAGAAATCTCTGTACCCAATCTTCTATGTGTGGGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR GCA 90 bp ATGGGTATTATAAACCAAACTCAGGTTCTTCAGCAGAGAAGTATTTaGTCTTACCCAATGAGCCATCCTTCCAGCATCTCTCCCTCTCAT +
Preference number: 1 (lower is better)
Translates to: MGIINQTQVLQQRSI*SYPMSHPSSISPSH
Trigger: ATGAGAGGGAGAGATGCTGGAAGGATGGCTCATTGGGTAAGAGCAAATACTTCTCTGCTGAAGAACCTGAGTTTGGTTTATAATACCCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR GCA 90 bp CAGGCTCATGTCTTCCTCCTGTACCATCTCCCTGACTCTAATCTGTaGATGTATGCTACATTTAGAACCACCACTGGAGATTTTAAAAAC +
Preference number: 1 (lower is better)
Translates to: QAHVFLLYHLPDSNL*MYATFRTTTGDFKN
Trigger: GTTTTTAAAATCTCCAGTGGTGGTTCTAAATGTAGCATACATGCACAGATTAGAGTCAGGGAGATGGTACAGGAGGAAGACATGAGCCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR TCA 90 bp GGCCCAGGAGCCAGGTGCTTAAGTGAACATGACAGAAGTCAGGTTTaGAACAACTCTAATCAAGACATATTTTCTAATGTCTATCTTGCC +
Preference number: 1 (lower is better)
Translates to: GPGARCLSEHDRSQV*NNSNQDIFSNVYLA
Trigger: GGCAAGATAGACATTAGAAAATATGTCTTGATTAGAGTTGTTTCAAACCTGACTTCTGTCATGTTCACTTAAGCACCTGGCTCCTGGGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR GCA 90 bp CCAATGAGCCATCCTTCCAGCATCTCTCCCTCTCATTGTGTCTGCTaGTTTGAGTTTGAGAAACAACTAGAAATTGTAAAACTTCATTCC +
Preference number: 1 (lower is better)
Translates to: PMSHPSSISPSHCVC*FEFEKQLEIVKLHS
Trigger: GGAATGAAGTTTTACAATTTCTAGTTGTTTCTCAAACTCAAAGCAGCAGACACAATGAGAGGGAGAGATGCTGGAAGGATGGCTCATTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR TCA 90 bp CTGACTCTGGTTTTTCTCTTACAAGCCTTCACAAGCTCGTCTTTCTaGGCTGGTTTTGTGATTAGTCAACACAAACTAACAAACAACAAA +
Preference number: 1 (lower is better)
Translates to: LTLVFLLQAFTSSSF*AGFVISQHKLTNNK
Trigger: TTTGTTGTTTGTTAGTTTGTGTTGACTAATCACAAAACCAGCTCAGAAAGACGAGCTTGTGAAGGCTTGTAAGAGAAAAACCAGAGTCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR TCA 90 bp AGTTCATTTTCTCATCCACAACCATTTAAGAGACAGATTCTCTTATaGTCTCCTTTCACAGTTAGGAGTGGGAAGCATGGAAAAGTACAA +
Preference number: 1 (lower is better)
Translates to: SSFSHPQPFKRQILL*SPFTVRSGKHGKVQ
Trigger: TTGTACTTTTCCATGCTTCCCACTCCTAACTGTGAAAGGAGATCATAAGAGAATCTGTCTCTTAAATGGTTGTGGATGAGAAAATGAACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR-3UTR TCA 90 bp CATTTGGAGAGCAGGAGAGCAATGGTTGCCAAAACGACCAGAATCCAGCCCAGCCAGCTAAATTCCAATTaGCTTAAATTCCCATGCCCA +
Preference number: 2 (lower is better)
Translates to: HLESRRAMVAKTTRIQPSQLNSN*LKFPCP
Trigger: TGGGCATGGGAATTTAAGTCAATTGGAATTTAGCTG...GCTGGGCTGGATTCTGGTCGTTTTGGCAACCATTGCTCTCCTGCTCTCCAAATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR-3UTR TCA 90 bp GGACCCTGTGAGGTGTCACCCACACATAGAAGATTGGGTACAGAGATTTCTCTCACACAACAGTCATCATaGGCATGTGATGGAACTGTA +
Preference number: 2 (lower is better)
Translates to: GPCEVSPTHRRLGTEISLTQQSS*ACDGTV
Trigger: TACAGTTCCATCACATGCTCATGATGACTGTTGTGT...GAGAGAAATCTCTGTACCCAATCTTCTATGTGTGGGTGACACCTCACAGGGTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR-3UTR TCA 90 bp GATGGAGAGCTTCTCACTCTATATATTGATTTCGGAAATAGGACTTTGGATGGAGGGGTTATGGTCCTGTaGGACAGGTACCTGTGGAGG +
Preference number: 2 (lower is better)
Translates to: DGELLTLYIDFGNRTLDGGVMVL*DRYLWR
Trigger: CCTCCACAGGTACCTGTCTCACAGGACCATAACCCC...TCCATCCAAAGTCCTATTTCCGAAATCAATATATAGAGTGAGAAGCTCTCCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR-3UTR TCA 90 bp GGACCCTGTGAGGTGTCACCCACACATAGAAGATTGGGTACAGAGATTTCTCTCACAAGCTCGTCTTTCTaGGCTGGTTTTGTGATTAGT +
Preference number: 2 (lower is better)
Translates to: GPCEVSPTHRRLGTEISLTSSSF*AGFVIS
Trigger: ACTAATCACAAAACCAGCTCAGAAAGACGAGCTTGT...GAGAGAAATCTCTGTACCCAATCTTCTATGTGTGGGTGACACCTCACAGGGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR-3UTR GCA 90 bp GGACCCTGTGAGGTGTCACCCACACATAGAAGATTGGGTACAGAGATTTCTCTCTCGACTGGGTATTATTaGAGCATTTCAGGATTCTGC +
Preference number: 2 (lower is better)
Translates to: GPCEVSPTHRRLGTEISLSTGYY*SISGFC
Trigger: GCAGAATCCTGAAATGCTGCAATAATACCCAGTCGA...GAGAGAAATCTCTGTACCCAATCTTCTATGTGTGGGTGACACCTCACAGGGTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR-3UTR CCA 90 bp GGACCCTGTGAGGTGTCACCCACACATAGAAGATTGGGTACAGAGATTTCTCTCTCCAATCTTGCTTCTTaGTCATTAGGTATGGACCCA +
Preference number: 2 (lower is better)
Translates to: GPCEVSPTHRRLGTEISLSNLAS*SLGMDP
Trigger: TGGGTCCATACCTAATGACCAAGAAGCAAGATTGGA...GAGAGAAATCTCTGTACCCAATCTTCTATGTGTGGGTGACACCTCACAGGGTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR CAA 90 bp CATGGGTATTATAAACCAAACTCAGGTTCTTCAGCAGAGAAGTATTaGCTCTTACCCAATGAGCCATCCTTCCAGCATCTCTCCCTCTCA +
Preference number: 2 (lower is better)
Translates to: HGYYKPNSGSSAEKY*LLPNEPSFQHLSLS
Trigger: TGAGAGGGAGAGATGCTGGAAGGATGGCTCATTGGGTAAGAGCAAATACTTCTCTGCTGAAGAACCTGAGTTTGGTTTATAATACCCATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR-3UTR TCA 90 bp GAGCATGTGATGGAACTGTATAAAGATGGAGAGCTTCTCACTCTATATATTGATGATGCTGCAGAGAGGTaGGGGGAGAGCAACATCTTG +
Preference number: 2 (lower is better)
Translates to: EHVMELYKDGELLTLYIDDAAER*GESNIL
Trigger: CAAGATGTTGCTCTCCCCTCACCTCTCTGCAGCATC...ATCAATATATAGAGTGAGAAGCTCTCCATCTTTATACAGTTCCATCACATGCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR-3UTR GCA 90 bp ATGTTTGATGTCTTCACTCCCAGGAACGAAGCCAAATACTTTCTTGATTCGATGGGGAGAGCAACATCTTaGCAGACATTTGGAGAGCAG +
Preference number: 2 (lower is better)
Translates to: MFDVFTPRNEAKYFLDSMGRATS*QTFGEQ
Trigger: CTGCTCTCCAAATGTCTGGCAAGATGTTGCTCTCCC...CATCGAATCAAGAAAGTATTTGGCTTCGTTCCTGGGAGTGAAGACATCAAACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR-3UTR CCA 90 bp GAGCATGTGATGGAACTGTATAAAGATGGAGAGCTTCTCACTCTATATATTGATGTGTACAGTCACAGGTaGGCAGCACAGATGTCCTCT +
Preference number: 2 (lower is better)
Translates to: EHVMELYKDGELLTLYIDVYSHR*AAQMSS
Trigger: AGAGGACATCTGTGCTGCCCACCTGTGACTGTACAC...ATCAATATATAGAGTGAGAAGCTCTCCATCTTTATACAGTTCCATCACATGCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR-3UTR TCA 90 bp AACAGTCATCATGAGCATGTGATGGAACTGTATAAAGATGGAGAGCTTCTCACTAAAAATCAGGCACCCTaGACTTTGAAAGGTGCAGCT +
Preference number: 2 (lower is better)
Translates to: NSHHEHVMELYKDGELLTKNQAP*TLKGAA
Trigger: AGCTGCACCTTTCAAAGTTCAGGGTGCCTGATTTTT...AGTGAGAAGCTCTCCATCTTTATACAGTTCCATCACATGCTCATGATGACTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
3UTR-3UTR TCA 90 bp ACAAATCAACAAATTAGGCCCCATAGAGATGGTCTGACTTTCATAAGGTTATCAGAGGATAGAGGAAAGTaGTGCTGGTTTGTGGTCACC +
Preference number: 2 (lower is better)
Translates to: TNQQIRPHRDGLTFIRLSEDRGK*CWFVVT
Trigger: GGTGACCACAAACCAGCATCACTTTCCTCTATCCTC...TGATAACCTTATGAAAGTCAGACCATCTCTATGGGGCCTAATTTGTTGATTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR-3UTR TCA 90 bp TATTTGATAATAAATGGTGGTGAAGATGACGCTGTGATGGACACTAATGGCAGCAGCACAGATGTCCTCTaGCTCTGGTTTTTCTCTTAC +
Preference number: 2 (lower is better)
Translates to: YLIINGGEDDAVMDTNGSSTDVL*LWFFSY
Trigger: GTAAGAGAAAAACCAGAGTCAGAGGACATCTGTGCT...GCTGCCATTAGTGTCCATCACAGCGTCATCTTCACCACCATTTATTATCAAATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR-3UTR CCA 90 bp AACAGTCATCATGAGCATGTGATGGAACTGTATAAAGATGGAGAGCTTCTCACTGCTTTTCAACCTGTGTaGCACGACTCCTTAAGAGTT +
Preference number: 2 (lower is better)
Translates to: NSHHEHVMELYKDGELLTAFQPV*HDSLRV
Trigger: AACTCTTAAGGAGTCGTGCCACACAGGTTGAAAAGC...AGTGAGAAGCTCTCCATCTTTATACAGTTCCATCACATGCTCATGATGACTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR-3UTR TCA 90 bp TATTTGATAATAAATGGTGGTGAAGATGACGCTGTGATGGACACTAATGGCAGCAATGGAAACTTCCTCTaGCTTTTTCTTCGACTGGGT +
Preference number: 2 (lower is better)
Translates to: YLIINGGEDDAVMDTNGSNGNFL*LFLRLG
Trigger: ACCCAGTCGAAGAAAAAGTCAGAGGAAGTTTCCATT...GCTGCCATTAGTGTCCATCACAGCGTCATCTTCACCACCATTTATTATCAAATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR-3UTR TCA 90 bp ACAAATCAACAAATTAGGCCCCATAGAGATGGTCTGACTTTCATAAGGTTATCAATCTCAATAGCTCTCTaGGGGAGCTATTATGGGCAT +
Preference number: 2 (lower is better)
Translates to: TNQQIRPHRDGLTFIRLSISIAL*GSYYGH
Trigger: ATGCCCATAATAGCTCCCTCAGAGAGCTATTGAGAT...TGATAACCTTATGAAAGTCAGACCATCTCTATGGGGCCTAATTTGTTGATTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR-3UTR TCA 90 bp CATGTGATGGAACTGTATAAAGATGGAGAGCTTCTCACTCTATATATTGATTTCAAAAATCAGGCACCCTaGACTTTGAAAGGTGCAGCT +
Preference number: 2 (lower is better)
Translates to: HVMELYKDGELLTLYIDFKNQAP*TLKGAA
Trigger: AGCTGCACCTTTCAAAGTTCAGGGTGCCTGATTTTT...GAAATCAATATATAGAGTGAGAAGCTCTCCATCTTTATACAGTTCCATCACATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
3UTR-3UTR TCA 90 bp GAGCATGTGATGGAACTGTATAAAGATGGAGAGCTTCTCACTCTATATATTGATACACAACAGTCATCATaGGCATGTGATGGAACTGTA +
Preference number: 2 (lower is better)
Translates to: EHVMELYKDGELLTLYIDTQQSS*ACDGTV
Trigger: TACAGTTCCATCACATGCTCATGATGACTGTTGTGT...ATCAATATATAGAGTGAGAAGCTCTCCATCTTTATACAGTTCCATCACATGCTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
3UTR-3UTR GCA 90 bp GAGCATGTGATGGAACTGTATAAAGATGGAGAGCTTCTCACTCTATATATTGATCCCTCTCATTGTGTCTaGTGCTTTGAGTTTGAGAAA +
Preference number: 2 (lower is better)
Translates to: EHVMELYKDGELLTLYIDPSHCV*CFEFEK
Trigger: TTTCTCAAACTCAAAGCAGCAGACACAATGAGAGGG...ATCAATATATAGAGTGAGAAGCTCTCCATCTTTATACAGTTCCATCACATGCTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR-3UTR GCA 90 bp GATGGAGAGCTTCTCACTCTATATATTGATTTCGGAAATAGGACTTTGGATGGAAAAACTGTATACCAGTaGTTTTCAACCTGTGTGGCA +
Preference number: 2 (lower is better)
Translates to: DGELLTLYIDFGNRTLDGKTVYQ*FSTCVA
Trigger: TGCCACACAGGTTGAAAAGCACTGGTATACAGTTTT...TCCATCCAAAGTCCTATTTCCGAAATCAATATATAGAGTGAGAAGCTCTCCATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR-3UTR GCA 90 bp GATGGAGAGCTTCTCACTCTATATATTGATTTCGGAAATAGGACTTTGGATGGACTGAACTTTGAAAGGTaGAGCTCTCAAGGTTTCATT +
Preference number: 2 (lower is better)
Translates to: DGELLTLYIDFGNRTLDGLNFER*SSQGFI
Trigger: AATGAAACCTTGAGAGCTGCACCTTTCAAAGTTCAG...TCCATCCAAAGTCCTATTTCCGAAATCAATATATAGAGTGAGAAGCTCTCCATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR-3UTR CCA 90 bp GATGGAGAGCTTCTCACTCTATATATTGATTTCGGAAATAGGACTTTGGATGGAATGACCATCAGCAGTTaGTTCTCTGGCAATCAAAAA +
Preference number: 2 (lower is better)
Translates to: DGELLTLYIDFGNRTLDGMTISS*FSGNQK
Trigger: TTTTTGATTGCCAGAGAACCAACTGCTGATGGTCAT...TCCATCCAAAGTCCTATTTCCGAAATCAATATATAGAGTGAGAAGCTCTCCATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR-3UTR TCA 90 bp ACAAATCAACAAATTAGGCCCCATAGAGATGGTCTGACTTTCATAAGGTTATCAGACAGAAGTCAGGTTTaGAACAACTCTAATCAAGAC +
Preference number: 2 (lower is better)
Translates to: TNQQIRPHRDGLTFIRLSDRSQV*NNSNQD
Trigger: GTCTTGATTAGAGTTGTTTCAAACCTGACTTCTGTC...TGATAACCTTATGAAAGTCAGACCATCTCTATGGGGCCTAATTTGTTGATTTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR-3UTR TCA 90 bp ACAAATCAACAAATTAGGCCCCATAGAGATGGTCTGACTTTCATAAGGTTATCAAAAGCTCCCAGAATTTaGCACAAAATAGAACCTCTC +
Preference number: 2 (lower is better)
Translates to: TNQQIRPHRDGLTFIRLSKAPRI*HKIEPL
Trigger: GAGAGGTTCTATTTTGTGTCAAATTCTGGGAGCTTT...TGATAACCTTATGAAAGTCAGACCATCTCTATGGGGCCTAATTTGTTGATTTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR-3UTR TCA 90 bp GAGCATGTGATGGAACTGTATAAAGATGGAGAGCTTCTCACTCTATATATTGATCTGCTCTGTATCCATTaGTTAACCTACATAACAGTG +
Preference number: 2 (lower is better)
Translates to: EHVMELYKDGELLTLYIDLLCIH*LTYITV
Trigger: CACTGTTATGTAGGTTAATCAATGGATACAGAGCAG...ATCAATATATAGAGTGAGAAGCTCTCCATCTTTATACAGTTCCATCACATGCTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR-3UTR GCA 90 bp GATGGAGAGCTTCTCACTCTATATATTGATTTCGGAAATAGGACTTTGGATGGACTTCCAAAAGCAGAATaGCAGTTGATGTCTTTTAGA +
Preference number: 2 (lower is better)
Translates to: DGELLTLYIDFGNRTLDGLPKAE*QLMSFR
Trigger: TCTAAAAGACATCAACTGGCATTCTGCTTTTGGAAG...TCCATCCAAAGTCCTATTTCCGAAATCAATATATAGAGTGAGAAGCTCTCCATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR-3UTR GCA 90 bp GATGGAGAGCTTCTCACTCTATATATTGATTTCGGAAATAGGACTTTGGATGGAAGGTCTTCAGTGACTTaGTATCAAGTATTCATTCAC +
Preference number: 2 (lower is better)
Translates to: DGELLTLYIDFGNRTLDGRSSVT*YQVFIH
Trigger: GTGAATGAATACTTGATAGCAAGTCACTGAAGACCT...TCCATCCAAAGTCCTATTTCCGAAATCAATATATAGAGTGAGAAGCTCTCCATC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR CAA 90 bp AGGGTCCCAGGATTAGGAGGGTTGAAAACCACTGCTCTGTATCCATaGATTAACCTACATAACAGTGAATATAAACATTTTATCAGATTA +
Preference number: 2 (lower is better)
Translates to: RVPGLGGLKTTALYP*INLHNSEYKHFIRL
Trigger: TAATCTGATAAAATGTTTATATTCACTGTTATGTAGGTTAATCAATGGATACAGAGCAGTGGTTTTCAACCCTCCTAATCCTGGGACCCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR-3UTR TCA 90 bp AGGTCCTTAAAGAGGTTTGGGAACATAAAGGAACAATTTGACAAGGAAAAGTTAGTCATCATGAGCATGTaGTGGAACTGTATAAAGATG +
Preference number: 2 (lower is better)
Translates to: RSLKRFGNIKEQFDKEKLVIMSM*WNCIKM
Trigger: CATCTTTATACAGTTCCATCACATGCTCATGATGAC...TAACTTTTCCTTGTCAAATTGTTCCTTTATGTTCCCAAACCTCTTTAAGGACCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR-3UTR TCA 90 bp AGGTCCTTAAAGAGGTTTGGGAACATAAAGGAACAATTTGACAAGGAAAAGTTACAGCTAAATTCCAATTaGCTTAAATTCCCATGCCCA +
Preference number: 2 (lower is better)
Translates to: RSLKRFGNIKEQFDKEKLQLNSN*LKFPCP
Trigger: TGGGCATGGGAATTTAAGTCAATTGGAATTTAGCTG...TAACTTTTCCTTGTCAAATTGTTCCTTTATGTTCCCAAACCTCTTTAAGGACCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR-3UTR GCA 90 bp ACAAATCAACAAATTAGGCCCCATAGAGATGGTCTGACTTTCATAAGGTTATCATCTCATTGTGTCTGCTaGTTTGAGTTTGAGAAACAA +
Preference number: 2 (lower is better)
Translates to: TNQQIRPHRDGLTFIRLSSHCVC*FEFEKQ
Trigger: TTGTTTCTCAAACTCAAAGCAGCAGACACAATGAGA...TGATAACCTTATGAAAGTCAGACCATCTCTATGGGGCCTAATTTGTTGATTTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR CAA 90 bp TGTCACACTAAGCAATGTTCTATCAGGGAAACTCCTGAAAGGATTTaGTTTTCTCAAAAATCCCTTCTTACTTGTTTCTGTCAAGTCAAA +
Preference number: 2 (lower is better)
Translates to: CHTKQCSIRETPERI*FSQKSLLTCFCQVK
Trigger: TTTGACTTGACAGAAACAAGTAAGAAGGGATTTTTGAGAAAACAAAATCCTTTCAGGAGTTTCCCTGATAGAACATTGCTTAGTGTGACA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR-3UTR CCA 90 bp GAGCATGTGATGGAACTGTATAAAGATGGAGAGCTTCTCACTCTATATATTGATGTCCTTAAAGAGGTTTaGGAACATAAAGGAACAATT +
Preference number: 2 (lower is better)
Translates to: EHVMELYKDGELLTLYIDVLKEV*EHKGTI
Trigger: AATTGTTCCTTTATGTTCCCAAACCTCTTTAAGGAC...ATCAATATATAGAGTGAGAAGCTCTCCATCTTTATACAGTTCCATCACATGCTC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR-3UTR CCA 90 bp ACAAATCAACAAATTAGGCCCCATAGAGATGGTCTGACTTTCATAAGGTTATCACAGCAGTTGGTTCTCTaGCAATCAAAAATAATTTTG +
Preference number: 2 (lower is better)
Translates to: TNQQIRPHRDGLTFIRLSQQLVL*QSKIIL
Trigger: CAAAATTATTTTTGATTGCCAGAGAACCAACTGCTG...TGATAACCTTATGAAAGTCAGACCATCTCTATGGGGCCTAATTTGTTGATTTGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR TCA 72 bp GGAGGTGATTGGTCCAATAGTGATGCTGCAGAGAGGTaGGGGGAGAGCAACATCTTGCCAGACATTTGGAGA +
Preference number: 3 (lower is better)
Translates to: GGDWSNSDAAER*GESNILPDIWR
Trigger: TCTCCAAATGTCTGGCAAGATGTTGCTCTCCCCTCACCTCTCTGCAGCATCACTATTGGACCAATCACCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR GCA 72 bp TCTTGCCAGACATTTGGAGAGCAGGAGAGCAATGGTTaGCAAAACGACCAGAATCCAGCCCAGCATCTACAC +
Preference number: 3 (lower is better)
Translates to: SCQTFGEQESNG*QNDQNPAQHLH
Trigger: GTGTAGATGCTGGGCTGGATTCTGGTCGTTTTGGCAACCATTGCTCTCCTGCTCTCCAAATGTCTGGCAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR CCA 72 bp AGGGACCCTGTGAGGTGTCACCCACACATAGAAGATTaGGTACAGAGATTTCTCTCCAGTCCTGACACGAAG +
Preference number: 3 (lower is better)
Translates to: RDPVRCHPHIED*VQRFLSSPDTK
Trigger: CTTCGTGTCAGGACTGGAGAGAAATCTCTGTACCCAATCTTCTATGTGTGGGTGACACCTCACAGGGTCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR CCA 72 bp AACATCTTGCCAGACATTTGGAGAGCAGGAGAGCAATaGTTGCCAAAACGACCAGAATCCAGCCCAGCATCT +
Preference number: 3 (lower is better)
Translates to: NILPDIWRAGEQ*LPKRPESSPAS
Trigger: AGATGCTGGGCTGGATTCTGGTCGTTTTGGCAACCATTGCTCTCCTGCTCTCCAAATGTCTGGCAAGATGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR-3UTR CAA 90 bp CATTTGGAGAGCAGGAGAGCAATGGTTGCCAAAACGACCAGAATCCAGCCCAGCAAGGTCTTCAGTGACTaGCTATCAAGTATTCATTCA +
Preference number: 3 (lower is better)
Translates to: HLESRRAMVAKTTRIQPSKVFSD*LSSIHS
Trigger: TGAATGAATACTTGATAGCAAGTCACTGAAGACCTT...GCTGGGCTGGATTCTGGTCGTTTTGGCAACCATTGCTCTCCTGCTCTCCAAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR TCA 72 bp TTTCAACCTGTGTGGCACGACTCCTTAAGAGTTGAATaGCACGTTCACAGGGGTCACCTAAGACCATTGGAA +
Preference number: 3 (lower is better)
Translates to: FQPVWHDSLRVE*HVHRGHLRPLE
Trigger: TTCCAATGGTCTTAGGTGACCCCTGTGAACGTGTCATTCAACTCTTAAGGAGTCGTGCCACACAGGTTGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR TCA 72 bp TGCTTTTCAACCTGTGTGGCACGACTCCTTAAGAGTTaGATGACACGTTCACAGGGGTCACCTAAGACCATT +
Preference number: 3 (lower is better)
Translates to: CFSTCVARLLKS*MTRSQGSPKTI
Trigger: AATGGTCTTAGGTGACCCCTGTGAACGTGTCATTCAACTCTTAAGGAGTCGTGCCACACAGGTTGAAAAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR GCA 72 bp GACACTAATGGCAGCCTCCCAAGGTCTTCAGTGACTTaGTATCAAGTATTCATTCACACACACGTCTTCCTG +
Preference number: 3 (lower is better)
Translates to: DTNGSLPRSSVT*YQVFIHTHVFL
Trigger: CAGGAAGACGTGTGTGTGAATGAATACTTGATAGCAAGTCACTGAAGACCTTGGGAGGCTGCCATTAGTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR-3UTR CAA 90 bp AACAGTCATCATGAGCATGTGATGGAACTGTATAAAGATGGAGAGCTTCTCACTGGGGAGAGCAACATCTaGCCAGACATTTGGAGAGCA +
Preference number: 3 (lower is better)
Translates to: NSHHEHVMELYKDGELLTGESNI*PDIWRA
Trigger: TGCTCTCCAAATGTCTGGCAAGATGTTGCTCTCCCC...AGTGAGAAGCTCTCCATCTTTATACAGTTCCATCACATGCTCATGATGACTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR TCA 72 bp ATTATGTGTATGTTTCTCTGTGGGGTTATGGTCCTGTaGGACAGGTACCTGTGGAGGCCAGAAGTGTTAGAT +
Preference number: 3 (lower is better)
Translates to: IMCMFLCGVMVL*DRYLWRPEVLD
Trigger: ATCTAACACTTCTGGCCTCCACAGGTACCTGTCTCACAGGACCATAACCCCACAGAGAAACATACACATAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR TCA 72 bp CTCTCCAGTCCTGACACGAAGGGATACGAATATGTTTaGTGTCTTCACTCCCAGGAACGAAGCCAAATACTT +
Preference number: 3 (lower is better)
Translates to: LSSPDTKGYEYV*CLHSQERSQIL
Trigger: AAGTATTTGGCTTCGTTCCTGGGAGTGAAGACATCAAACATATTCGTATCCCTTCGTGTCAGGACTGGAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR GCA 72 bp GTCTTCCTCCTGTACCATCTCCCTGACTCTAATCTGTaGATGTATGCTACATTTAGAACCACCACTGGAGAT +
Preference number: 3 (lower is better)
Translates to: VFLLYHLPDSNL*MYATFRTTTGD
Trigger: ATCTCCAGTGGTGGTTCTAAATGTAGCATACATGCACAGATTAGAGTCAGGGAGATGGTACAGGAGGAAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR-3UTR CAA 90 bp ATGTTTGATGTCTTCACTCCCAGGAACGAAGCCAAATACTTTCTTGATTCGATGCATCTTGCCAGACATTaGGAGAGCAGGAGAGCAATG +
Preference number: 3 (lower is better)
Translates to: MFDVFTPRNEAKYFLDSMHLARH*ESRRAM
Trigger: CATTGCTCTCCTGCTCTCCAAATGTCTGGCAAGATG...CATCGAATCAAGAAAGTATTTGGCTTCGTTCCTGGGAGTGAAGACATCAAACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR TCA 72 bp CCAGTATCGAGCCGAGCAACACAGCTAAATTCCAATTaGCTTAAATTCCCATGCCCATACAAATTGGACGGT +
Preference number: 3 (lower is better)
Translates to: PVSSRATQLNSN*LKFPCPYKLDG
Trigger: ACCGTCCAATTTGTATGGGCATGGGAATTTAAGTCAATTGGAATTTAGCTGTGTTGCTCGGCTCGATACTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
3UTR TCA 72 bp ATTATGGGCATAGGACAAAATAGCACTCCAAATTATTaGTGCTTGCACCAGTATCGAGCCGAGCAACACAGC +
Preference number: 3 (lower is better)
Translates to: IMGIGQNSTPNY*CLHQYRAEQHS
Trigger: GCTGTGTTGCTCGGCTCGATACTGGTGCAAGCATCAATAATTTGGAGTGCTATTTTGTCCTATGCCCATAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR TCA 72 bp ACAAGTAATTTTACTGGTTGGGGGATCATCACAACATaGGGAACTGTATTAAAGGGTCCCAGGATTAGGAGG +
Preference number: 3 (lower is better)
Translates to: TSNFTGWGIITT*GTVLKGPRIRR
Trigger: CCTCCTAATCCTGGGACCCTTTAATACAGTTCCTCATGTTGTGATGATCCCCCAACCAGTAAAATTACTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR GCA 72 bp ATAAACCAAACTCAGGTTCTTCAGCAGAGAAGTATTTaGTCTTACCCAATGAGCCATCCTTCCAGCATCTCT +
Preference number: 3 (lower is better)
Translates to: INQTQVLQQRSI*SYPMSHPSSIS
Trigger: AGAGATGCTGGAAGGATGGCTCATTGGGTAAGAGCAAATACTTCTCTGCTGAAGAACCTGAGTTTGGTTTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR GCA 72 bp ACTTTCTTGATTCGATGTCTAATAAGAAGTTGGGAATaGTCCTCAGCAGCTTTCTCAAAGAGCACTCTCTCG +
Preference number: 3 (lower is better)
Translates to: TFLIRCLIRSWE*SSAAFSKSTLS
Trigger: CGAGAGAGTGCTCTTTGAGAAAGCTGCTGAGGAGCATTCCCAACTTCTTATTAGACATCGAATCAAGAAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR-3UTR CAA 90 bp GAGCATGTGATGGAACTGTATAAAGATGGAGAGCTTCTCACTCTATATATTGATTCACTGACTTTCCTATaGGAGGGAACTGAGTGGCCT +
Preference number: 3 (lower is better)
Translates to: EHVMELYKDGELLTLYIDSLTFL*EGTEWP
Trigger: AGGCCACTCAGTTCCCTCCAATAGGAAAGTCAGTGA...ATCAATATATAGAGTGAGAAGCTCTCCATCTTTATACAGTTCCATCACATGCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR TCA 72 bp GTCCTTAAAGAGGTTTGGGAACATAAAGGAACAATTTaGCAAGGAAAAGTTACAGTTGGGACCCCTGTTGTG +
Preference number: 3 (lower is better)
Translates to: VLKEVWEHKGTI*QGKVTVGTPVV
Trigger: CACAACAGGGGTCCCAACTGTAACTTTTCCTTGTCAAATTGTTCCTTTATGTTCCCAAACCTCTTTAAGGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR-3UTR CAA 90 bp TATTTGATAATAAATGGTGGTGAAGATGACGCTGTGATGGACACTAATGGCAGCTTCGACTGGGTATTATaGCAGCATTTCAGGATTCTG +
Preference number: 3 (lower is better)
Translates to: YLIINGGEDDAVMDTNGSFDWVL*QHFRIL
Trigger: CAGAATCCTGAAATGCTGCAATAATACCCAGTCGAA...GCTGCCATTAGTGTCCATCACAGCGTCATCTTCACCACCATTTATTATCAAATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR-3UTR CAA 90 bp GATGGAGAGCTTCTCACTCTATATATTGATTTCGGAAATAGGACTTTGGATGGACTTAACGTAAAAGTATaGCAGGCTCATGTCTTCCTC +
Preference number: 3 (lower is better)
Translates to: DGELLTLYIDFGNRTLDGLNVKV*QAHVFL
Trigger: GAGGAAGACATGAGCCTGCAATACTTTTACGTTAAG...TCCATCCAAAGTCCTATTTCCGAAATCAATATATAGAGTGAGAAGCTCTCCATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR CCA 72 bp CCAAATACTTTCTTGATTCGATGTCTAATAAGAAGTTaGGAATGCTCCTCAGCAGCTTTCTCAAAGAGCACT +
Preference number: 3 (lower is better)
Translates to: PNTFLIRCLIRS*ECSSAAFSKST
Trigger: AGTGCTCTTTGAGAAAGCTGCTGAGGAGCATTCCCAACTTCTTATTAGACATCGAATCAAGAAAGTATTTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR-3UTR CAA 90 bp ACAAATCAACAAATTAGGCCCCATAGAGATGGTCTGACTTTCATAAGGTTATCAGAAAGTGATGCTGGTTaGTGGTCACCATATGAAAAG +
Preference number: 3 (lower is better)
Translates to: TNQQIRPHRDGLTFIRLSESDAG*WSPYEK
Trigger: CTTTTCATATGGTGACCACAAACCAGCATCACTTTC...TGATAACCTTATGAAAGTCAGACCATCTCTATGGGGCCTAATTTGTTGATTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR TCA 72 bp GTTTTTCTCTTACAAGCCTTCACAAGCTCGTCTTTCTaGGCTGGTTTTGTGATTAGTCAACACAAACTAACA +
Preference number: 3 (lower is better)
Translates to: VFLLQAFTSSSF*AGFVISQHKLT
Trigger: TGTTAGTTTGTGTTGACTAATCACAAAACCAGCTCAGAAAGACGAGCTTGTGAAGGCTTGTAAGAGAAAAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR-3UTR CAA 90 bp GAGCATGTGATGGAACTGTATAAAGATGGAGAGCTTCTCACTCTATATATTGATAAAGCAGAATGCCAGTaGATGTCTTTTAGAGAAAGC +
Preference number: 3 (lower is better)
Translates to: EHVMELYKDGELLTLYIDKAECQ*MSFRES
Trigger: GCTTTCTCTAAAAGACATCAACTGGCATTCTGCTTT...ATCAATATATAGAGTGAGAAGCTCTCCATCTTTATACAGTTCCATCACATGCTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR GCA 72 bp AAACTTCCTCTGACTTTTTCTTCGACTGGGTATTATTaGAGCATTTCAGGATTCTGCGTCTTGATTTTATTT +
Preference number: 3 (lower is better)
Translates to: KLPLTFSSTGYY*SISGFCVLILF
Trigger: AAATAAAATCAAGACGCAGAATCCTGAAATGCTGCAATAATACCCAGTCGAAGAAAAAGTCAGAGGAAGTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR TCA 72 bp CTTACTTGTTTCTGTCAAGTCAAAGCTCCCAGAATTTaGCACAAAATAGAACCTCTCATAACTGTATACAAA +
Preference number: 3 (lower is better)
Translates to: LTCFCQVKAPRI*HKIEPLITVYK
Trigger: TTTGTATACAGTTATGAGAGGTTCTATTTTGTGTCAAATTCTGGGAGCTTTGACTTGACAGAAACAAGTAAG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR CAA 72 bp AGAGAGGTGAGGGGAGAGCAACATCTTGCCAGACATTaGGAGAGCAGGAGAGCAATGGTTGCCAAAACGACC +
Preference number: 4 (lower is better)
Translates to: REVRGEQHLARH*ESRRAMVAKTT
Trigger: GGTCGTTTTGGCAACCATTGCTCTCCTGCTCTCCAAATGTCTGGCAAGATGTTGCTCTCCCCTCACCTCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
3UTR CAA 72 bp CTGGCTCAGAAGGTAAGCTTTCTCTGTTTGAGTTTGTaGAGGAGAGGGCTTCAGAAGCCGTCAGAGGCTGTT +
Preference number: 4 (lower is better)
Translates to: LAQKVSFLCLSL*RRGLQKPSEAV
Trigger: AACAGCCTCTGACGGCTTCTGAAGCCCTCTCCTCAACAAACTCAAACAGAGAAAGCTTACCTTCTGAGCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR CAA 72 bp ATCTTGCCAGACATTTGGAGAGCAGGAGAGCAATGGTaGCCAAAACGACCAGAATCCAGCCCAGCATCTACA +
Preference number: 4 (lower is better)
Translates to: ILPDIWRAGEQW*PKRPESSPAST
Trigger: TGTAGATGCTGGGCTGGATTCTGGTCGTTTTGGCAACCATTGCTCTCCTGCTCTCCAAATGTCTGGCAAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
CDS-3UTR GCA 90 bp AACAGTCATCATGAGCATGTGATGGAACTGTATAAAGATGGAGAGCTTCTCACTTCCTCTCCAGAGGGCTaGTTCTCCGGTATGGAGGGG +
Preference number: 4 (lower is better)
Translates to: NSHHEHVMELYKDGELLTSSPEG*FSGMEG
Trigger: CCCCTCCATACCGGAGAAGCAGCCCTCTGGAGAGGA...AGTGAGAAGCTCTCCATCTTTATACAGTTCCATCACATGCTCATGATGACTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS-3UTR CCA 90 bp TATTTGATAATAAATGGTGGTGAAGATGACGCTGTGATGGACACTAATGGCAGCGCTGCTTCTCCGGTATaGAGGGGTACAGCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: YLIINGGEDDAVMDTNGSAASPV*RGTAAA
Trigger: TGCTGCAGCTGTACCCCTCCATACCGGAGAAGCAGC...GCTGCCATTAGTGTCCATCACAGCGTCATCTTCACCACCATTTATTATCAAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
CDS-3UTR CCA 90 bp AACAGTCATCATGAGCATGTGATGGAACTGTATAAAGATGGAGAGCTTCTCACTCGTCAACCATGTCAGTaGAGCAACCAGAGCCCTCCC +
Preference number: 4 (lower is better)
Translates to: NSHHEHVMELYKDGELLTRQPCQ*SNQSPP
Trigger: GGGAGGGCTCTGGTTGCTCCACTGACATGGTTGACG...AGTGAGAAGCTCTCCATCTTTATACAGTTCCATCACATGCTCATGATGACTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS-3UTR TCA 90 bp AACAGTCATCATGAGCATGTGATGGAACTGTATAAAGATGGAGAGCTTCTCACTGATGCTGCAGAGAGGTaGGGGGAGAGCAACATCTTG +
Preference number: 4 (lower is better)
Translates to: NSHHEHVMELYKDGELLTDAAER*GESNIL
Trigger: CAAGATGTTGCTCTCCCCTCACCTCTCTGCAGCATC...AGTGAGAAGCTCTCCATCTTTATACAGTTCCATCACATGCTCATGATGACTGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
CDS-3UTR GCA 90 bp TTCCTTAGGTCCTTAAAGAGGTTTGGGAACATAAAGGAACAATTTGACAAGGAATCCTCTCCAGAGGGCTaGTTCTCCGGTATGGAGGGG +
Preference number: 4 (lower is better)
Translates to: FLRSLKRFGNIKEQFDKESSPEG*FSGMEG
Trigger: CCCCTCCATACCGGAGAAGCAGCCCTCTGGAGAGGA...TTCCTTGTCAAATTGTTCCTTTATGTTCCCAAACCTCTTTAAGGACCTAAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
CDS-3UTR CCA 90 bp AACAGTCATCATGAGCATGTGATGGAACTGTATAAAGATGGAGAGCTTCTCACTAGCAGCAGTACTCGCTaGCAACTGTCCACATTTGGC +
Preference number: 4 (lower is better)
Translates to: NSHHEHVMELYKDGELLTSSSTR*QLSTFG
Trigger: GCCAAATGTGGACAGTTGCCAGCGAGTACTGCTGCT...AGTGAGAAGCTCTCCATCTTTATACAGTTCCATCACATGCTCATGATGACTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
3UTR CAA 72 bp GAGAGGGCTTCAGAAGCCGTCAGAGGCTGTTTCCTATaGTTAAGTCCTAAGCAACTATTAATCTTCCTGGTG +
Preference number: 4 (lower is better)
Translates to: ERASEAVRGCFL*LSPKQLLIFLV
Trigger: CACCAGGAAGATTAATAGTTGCTTAGGACTTAACAATAGGAAACAGCCTCTGACGGCTTCTGAAGCCCTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
CDS-3UTR TCA 90 bp GATGGAGAGCTTCTCACTCTATATATTGATTTCGGAAATAGGACTTTGGATGGACACATCAGAGGGAGCTaGCGTGTAGCATGGAAATCC +
Preference number: 4 (lower is better)
Translates to: DGELLTLYIDFGNRTLDGHIRGS*RVAWKS
Trigger: GGATTTCCATGCTACACGTCAGCTCCCTCTGATGTG...TCCATCCAAAGTCCTATTTCCGAAATCAATATATAGAGTGAGAAGCTCTCCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS-3UTR CCA 90 bp AGGTCCTTAAAGAGGTTTGGGAACATAAAGGAACAATTTGACAAGGAAAAGTTAGCTGCTTCTCCGGTATaGAGGGGTACAGCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: RSLKRFGNIKEQFDKEKLAASPV*RGTAAA
Trigger: TGCTGCAGCTGTACCCCTCCATACCGGAGAAGCAGC...TAACTTTTCCTTGTCAAATTGTTCCTTTATGTTCCCAAACCTCTTTAAGGACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR CAA 72 bp CCCCATAGAGATGGTCTGACTTTCATAAGGTTATCATaGGTTGACAGTGAGTTCAGGACAATTTCCTGGCCA +
Preference number: 4 (lower is better)
Translates to: PHRDGLTFIRLS*VDSEFRTISWP
Trigger: TGGCCAGGAAATTGTCCTGAACTCACTGTCAACCAATGATAACCTTATGAAAGTCAGACCATCTCTATGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
CDS-3UTR CCA 90 bp TTCCTTAGGTCCTTAAAGAGGTTTGGGAACATAAAGGAACAATTTGACAAGGAAAGCAGCAGTACTCGCTaGCAACTGTCCACATTTGGC +
Preference number: 4 (lower is better)
Translates to: FLRSLKRFGNIKEQFDKESSSTR*QLSTFG
Trigger: GCCAAATGTGGACAGTTGCCAGCGAGTACTGCTGCT...TTCCTTGTCAAATTGTTCCTTTATGTTCCCAAACCTCTTTAAGGACCTAAGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR CAA 72 bp TATAAACCAAACTCAGGTTCTTCAGCAGAGAAGTATTaGCTCTTACCCAATGAGCCATCCTTCCAGCATCTC +
Preference number: 4 (lower is better)
Translates to: YKPNSGSSAEKY*LLPNEPSFQHL
Trigger: GAGATGCTGGAAGGATGGCTCATTGGGTAAGAGCAAATACTTCTCTGCTGAAGAACCTGAGTTTGGTTTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR CAA 72 bp GCCAAATACTTTCTTGATTCGATGTCTAATAAGAAGTaGGGAATGCTCCTCAGCAGCTTTCTCAAAGAGCAC +
Preference number: 4 (lower is better)
Translates to: AKYFLDSMSNKK*GMLLSSFLKEH
Trigger: GTGCTCTTTGAGAAAGCTGCTGAGGAGCATTCCCAACTTCTTATTAGACATCGAATCAAGAAAGTATTTGGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
CDS-3UTR GCA 90 bp CATGTGATGGAACTGTATAAAGATGGAGAGCTTCTCACTCTATATATTGATTTCGGGAGAGCAACATCTTaGCAGACATTTGGAGAGCAG +
Preference number: 4 (lower is better)
Translates to: HVMELYKDGELLTLYIDFGRATS*QTFGEQ
Trigger: CTGCTCTCCAAATGTCTGGCAAGATGTTGCTCTCCC...GAAATCAATATATAGAGTGAGAAGCTCTCCATCTTTATACAGTTCCATCACATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
CDS-3UTR CCA 90 bp GAGCATGTGATGGAACTGTATAAAGATGGAGAGCTTCTCACTCTATATATTGATATCTTGCCAGACATTTaGAGAGCAGGAGAGCAATGG +
Preference number: 4 (lower is better)
Translates to: EHVMELYKDGELLTLYIDILPDI*RAGEQW
Trigger: CCATTGCTCTCCTGCTCTCCAAATGTCTGGCAAGAT...ATCAATATATAGAGTGAGAAGCTCTCCATCTTTATACAGTTCCATCACATGCTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR CAA 72 bp AACATAAAGGAACAATTTGACAAGGAAAAGTTACAGTaGGGACCCCTGTTGTGGATCATAGAAGGGAAGCTT +
Preference number: 4 (lower is better)
Translates to: NIKEQFDKEKLQ*GPLLWIIEGKL
Trigger: AAGCTTCCCTTCTATGATCCACAACAGGGGTCCCAACTGTAACTTTTCCTTGTCAAATTGTTCCTTTATGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
CDS-3UTR TCA 90 bp TTCCTTAGGTCCTTAAAGAGGTTTGGGAACATAAAGGAACAATTTGACAAGGAAGGATACGAATATGTTTaGTGTCTTCACTCCCAGGAA +
Preference number: 4 (lower is better)
Translates to: FLRSLKRFGNIKEQFDKEGYEYV*CLHSQE
Trigger: TTCCTGGGAGTGAAGACATCAAACATATTCGTATCC...TTCCTTGTCAAATTGTTCCTTTATGTTCCCAAACCTCTTTAAGGACCTAAGGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
CDS-3UTR GCA 90 bp AGGTCCTTAAAGAGGTTTGGGAACATAAAGGAACAATTTGACAAGGAAAAGTTAAGAGGCAAACTCACTTaGTGCACATTCATAGTAGGT +
Preference number: 4 (lower is better)
Translates to: RSLKRFGNIKEQFDKEKLRGKLT*CTFIVG
Trigger: ACCTACTATGAATGTGCAGCAAGTGAGTTTGCCTCT...TAACTTTTCCTTGTCAAATTGTTCCTTTATGTTCCCAAACCTCTTTAAGGACCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
CDS-3UTR GCA 90 bp CATGTGATGGAACTGTATAAAGATGGAGAGCTTCTCACTCTATATATTGATTTCAGAGGCAAACTCACTTaGTGCACATTCATAGTAGGT +
Preference number: 4 (lower is better)
Translates to: HVMELYKDGELLTLYIDFRGKLT*CTFIVG
Trigger: ACCTACTATGAATGTGCAGCAAGTGAGTTTGCCTCT...GAAATCAATATATAGAGTGAGAAGCTCTCCATCTTTATACAGTTCCATCACATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS-3UTR CCA 90 bp AGGTCCTTAAAGAGGTTTGGGAACATAAAGGAACAATTTGACAAGGAAAAGTTACCACACATAGAAGATTaGGTACAGAGATTTCTCTCC +
Preference number: 4 (lower is better)
Translates to: RSLKRFGNIKEQFDKEKLPHIED*VQRFLS
Trigger: GGAGAGAAATCTCTGTACCCAATCTTCTATGTGTGG...TAACTTTTCCTTGTCAAATTGTTCCTTTATGTTCCCAAACCTCTTTAAGGACCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR CAA 72 bp CTTCTCACTCTATATATTGATTTCGGAAATAGGACTTaGGATGGACTTCTGTCCATAAGTGTCAGAGAGAAA +
Preference number: 4 (lower is better)
Translates to: LLTLYIDFGNRT*DGLLSISVREK
Trigger: TTTCTCTCTGACACTTATGGACAGAAGTCCATCCAAAGTCCTATTTCCGAAATCAATATATAGAGTGAGAAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
3UTR CAA 72 bp GTTGATCTCCTTGAAAGTCAAGATGACCATCAGCAGTaGGTTCTCTGGCAATCAAAAATAATTTTGGCTAAA +
Preference number: 4 (lower is better)
Translates to: VDLLESQDDHQQ*VLWQSKIILAK
Trigger: TTTAGCCAAAATTATTTTTGATTGCCAGAGAACCAACTGCTGATGGTCATCTTGACTTTCAAGGAGATCAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR CAA 72 bp TCTTACTTGTTTCTGTCAAGTCAAAGCTCCCAGAATTaGACACAAAATAGAACCTCTCATAACTGTATACAA +
Preference number: 4 (lower is better)
Translates to: SYLFLSSQSSQN*TQNRTSHNCIQ
Trigger: TTGTATACAGTTATGAGAGGTTCTATTTTGTGTCAAATTCTGGGAGCTTTGACTTGACAGAAACAAGTAAGA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
3UTR CAA 72 bp GGATTAGGAGGGTTGAAAACCACTGCTCTGTATCCATaGATTAACCTACATAACAGTGAATATAAACATTTT +
Preference number: 4 (lower is better)
Translates to: GLGGLKTTALYP*INLHNSEYKHF
Trigger: AAAATGTTTATATTCACTGTTATGTAGGTTAATCAATGGATACAGAGCAGTGGTTTTCAACCCTCCTAATCC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
CDS CCA 90 bp CATGAGGCAAGCCAATCTCCTCTCCAGAGGGCTGCTTCTCCGGTATaGAGGGGTACAGCTGCAGCAGCAGTACTCGCTGGCAACTGTCCA +
Preference number: 5 (lower is better)
Translates to: HEASQSPLQRAASPV*RGTAAAAVLAGNCP
Trigger: TGGACAGTTGCCAGCGAGTACTGCTGCTGCAGCTGTACCCCTCCATACCGGAGAAGCAGCCCTCTGGAGAGGAGATTGGCTTGCCTCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS GCA 90 bp ATCTCCTCTCCAGAGGGCTGCTTCTCCGGTATGGAGGGGTACAGCTaGAGCAGCAGTACTCGCTGGCAACTGTCCACATTTGGCCTCGTA +
Preference number: 5 (lower is better)
Translates to: ISSPEGCFSGMEGYS*SSSTRWQLSTFGLV
Trigger: TACGAGGCCAAATGTGGACAGTTGCCAGCGAGTACTGCTGCTGCAGCTGTACCCCTCCATACCGGAGAAGCAGCCCTCTGGAGAGGAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS CCA 90 bp TGCTTCTCCGGTATGGAGGGGTACAGCTGCAGCAGCAGTACTCGCTaGCAACTGTCCACATTTGGCCTCGTAGAGCATAGCCAGCAATCA +
Preference number: 5 (lower is better)
Translates to: CFSGMEGYSCSSSTR*QLSTFGLVEHSQQS
Trigger: TGATTGCTGGCTATGCTCTACGAGGCCAAATGTGGACAGTTGCCAGCGAGTACTGCTGCTGCAGCTGTACCCCTCCATACCGGAGAAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS CCA 90 bp TTCATAGTAGGTACCTGTCAGCAGGGTCACCGTCAACCATGTCAGTaGAGCAACCAGAGCCCTCCCAGTGATGTCGAAGAACATGAGGCA +
Preference number: 5 (lower is better)
Translates to: FIVGTCQQGHRQPCQ*SNQSPPSDVEEHEA
Trigger: TGCCTCATGTTCTTCGACATCACTGGGAGGGCTCTGGTTGCTCCACTGACATGGTTGACGGTGACCCTGCTGACAGGTACCTACTATGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS GCA 90 bp ATTAGCAAACATCGGGTATTGGTCCACAGAGGCAAACTCACTTGCTaGACATTCATAGTAGGTACCTGTCAGCAGGGTCACCGTCAACCA +
Preference number: 5 (lower is better)
Translates to: ISKHRVLVHRGKLTC*TFIVGTCQQGHRQP
Trigger: TGGTTGACGGTGACCCTGCTGACAGGTACCTACTATGAATGTGCAGCAAGTGAGTTTGCCTCTGTGGACCAATACCCGATGTTTGCTAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS GCA 90 bp GACATTAGCAAACATCGGGTATTGGTCCACAGAGGCAAACTCACTTaGTGCACATTCATAGTAGGTACCTGTCAGCAGGGTCACCGTCAA +
Preference number: 5 (lower is better)
Translates to: DISKHRVLVHRGKLT*CTFIVGTCQQGHRQ
Trigger: TTGACGGTGACCCTGCTGACAGGTACCTACTATGAATGTGCAGCAAGTGAGTTTGCCTCTGTGGACCAATACCCGATGTTTGCTAATGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS-3UTR CAA 90 bp GGACCCTGTGAGGTGTCACCCACACATAGAAGATTGGGTACAGAGATTTCTCTCATAAGAGGAGAACAGTaGCTGTCCGCAAACAGTCAA +
Preference number: 5 (lower is better)
Translates to: GPCEVSPTHRRLGTEISLIRGEQ*LSANSQ
Trigger: TTGACTGTTTGCGGACAGCAACTGTTCTCCTCTTAT...GAGAGAAATCTCTGTACCCAATCTTCTATGTGTGGGTGACACCTCACAGGGTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218239.2
CDS-3UTR CAA 90 bp AACAGTCATCATGAGCATGTGATGGAACTGTATAAAGATGGAGAGCTTCTCACTCAGAGGCAAACTCACTaGCTGCACATTCATAGTAGG +
Preference number: 5 (lower is better)
Translates to: NSHHEHVMELYKDGELLTQRQTH*LHIHSR
Trigger: CCTACTATGAATGTGCAGCAAGTGAGTTTGCCTCTG...AGTGAGAAGCTCTCCATCTTTATACAGTTCCATCACATGCTCATGATGACTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS-3UTR CAA 90 bp TTCCTTAGGTCCTTAAAGAGGTTTGGGAACATAAAGGAACAATTTGACAAGGAAGGGGAGAGCAACATCTaGCCAGACATTTGGAGAGCA +
Preference number: 5 (lower is better)
Translates to: FLRSLKRFGNIKEQFDKEGESNI*PDIWRA
Trigger: TGCTCTCCAAATGTCTGGCAAGATGTTGCTCTCCCC...TTCCTTGTCAAATTGTTCCTTTATGTTCCCAAACCTCTTTAAGGACCTAAGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
CDS-3UTR CAA 90 bp GATGGAGAGCTTCTCACTCTATATATTGATTTCGGAAATAGGACTTTGGATGGACAGAGGCAAACTCACTaGCTGCACATTCATAGTAGG +
Preference number: 5 (lower is better)
Translates to: DGELLTLYIDFGNRTLDGQRQTH*LHIHSR
Trigger: CCTACTATGAATGTGCAGCAAGTGAGTTTGCCTCTG...TCCATCCAAAGTCCTATTTCCGAAATCAATATATAGAGTGAGAAGCTCTCCATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS-3UTR CAA 90 bp TTCCTTAGGTCCTTAAAGAGGTTTGGGAACATAAAGGAACAATTTGACAAGGAACATCTTGCCAGACATTaGGAGAGCAGGAGAGCAATG +
Preference number: 5 (lower is better)
Translates to: FLRSLKRFGNIKEQFDKEHLARH*ESRRAM
Trigger: CATTGCTCTCCTGCTCTCCAAATGTCTGGCAAGATG...TTCCTTGTCAAATTGTTCCTTTATGTTCCCAAACCTCTTTAAGGACCTAAGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
CDS-3UTR CAA 90 bp GATGGAGAGCTTCTCACTCTATATATTGATTTCGGAAATAGGACTTTGGATGGAAGCATCTCTTCTCGTTaGCTAGGAGTGACATTAGCA +
Preference number: 5 (lower is better)
Translates to: DGELLTLYIDFGNRTLDGSISSR*LGVTLA
Trigger: TGCTAATGTCACTCCTAGCAAACGAGAAGAGATGCT...TCCATCCAAAGTCCTATTTCCGAAATCAATATATAGAGTGAGAAGCTCTCCATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS-3UTR CAA 90 bp TTCCTTAGGTCCTTAAAGAGGTTTGGGAACATAAAGGAACAATTTGACAAGGAAATAAGAGGAGAACAGTaGCTGTCCGCAAACAGTCAA +
Preference number: 5 (lower is better)
Translates to: FLRSLKRFGNIKEQFDKEIRGEQ*LSANSQ
Trigger: TTGACTGTTTGCGGACAGCAACTGTTCTCCTCTTAT...TTCCTTGTCAAATTGTTCCTTTATGTTCCCAAACCTCTTTAAGGACCTAAGGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
CDS-3UTR CAA 90 bp ACAAATCAACAAATTAGGCCCCATAGAGATGGTCTGACTTTCATAAGGTTATCAATGTCTAATAAGAAGTaGGGAATGCTCCTCAGCAGC +
Preference number: 5 (lower is better)
Translates to: TNQQIRPHRDGLTFIRLSMSNKK*GMLLSS
Trigger: GCTGCTGAGGAGCATTCCCAACTTCTTATTAGACAT...TGATAACCTTATGAAAGTCAGACCATCTCTATGGGGCCTAATTTGTTGATTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
CDS-3UTR CAA 90 bp AGGTCCTTAAAGAGGTTTGGGAACATAAAGGAACAATTTGACAAGGAAAAGTTAGGGATACGAATATGTTaGATGTCTTCACTCCCAGGA +
Preference number: 5 (lower is better)
Translates to: RSLKRFGNIKEQFDKEKLGIRIC*MSSLPG
Trigger: TCCTGGGAGTGAAGACATCAAACATATTCGTATCCC...TAACTTTTCCTTGTCAAATTGTTCCTTTATGTTCCCAAACCTCTTTAAGGACCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
CDS CCA 72 bp AGCCAATCTCCTCTCCAGAGGGCTGCTTCTCCGGTATaGAGGGGTACAGCTGCAGCAGCAGTACTCGCTGGC +
Preference number: 6 (lower is better)
Translates to: SQSPLQRAASPV*RGTAAAAVLAG
Trigger: GCCAGCGAGTACTGCTGCTGCAGCTGTACCCCTCCATACCGGAGAAGCAGCCCTCTGGAGAGGAGATTGGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS GCA 72 bp CCAGAGGGCTGCTTCTCCGGTATGGAGGGGTACAGCTaGAGCAGCAGTACTCGCTGGCAACTGTCCACATTT +
Preference number: 6 (lower is better)
Translates to: PEGCFSGMEGYS*SSSTRWQLSTF
Trigger: AAATGTGGACAGTTGCCAGCGAGTACTGCTGCTGCAGCTGTACCCCTCCATACCGGAGAAGCAGCCCTCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS CCA 72 bp GGTATGGAGGGGTACAGCTGCAGCAGCAGTACTCGCTaGCAACTGTCCACATTTGGCCTCGTAGAGCATAGC +
Preference number: 6 (lower is better)
Translates to: GMEGYSCSSSTR*QLSTFGLVEHS
Trigger: GCTATGCTCTACGAGGCCAAATGTGGACAGTTGCCAGCGAGTACTGCTGCTGCAGCTGTACCCCTCCATACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS GCA 72 bp CATCGGGTATTGGTCCACAGAGGCAAACTCACTTGCTaGACATTCATAGTAGGTACCTGTCAGCAGGGTCAC +
Preference number: 6 (lower is better)
Translates to: HRVLVHRGKLTC*TFIVGTCQQGH
Trigger: GTGACCCTGCTGACAGGTACCTACTATGAATGTGCAGCAAGTGAGTTTGCCTCTGTGGACCAATACCCGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS CAA 90 bp GAGAGCAACATCTTGCCAGACATTTGGAGAGCAGGAGAGCAATGGTaGCCAAAACGACCAGAATCCAGCCCAGCATTTGTGACTGGTATC +
Preference number: 6 (lower is better)
Translates to: ESNILPDIWRAGEQW*PKRPESSPAFVTGI
Trigger: GATACCAGTCACAAATGCTGGGCTGGATTCTGGTCGTTTTGGCAACCATTGCTCTCCTGCTCTCCAAATGTCTGGCAAGATGTTGCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
CDS CAA 72 bp CAAACATCGGGTATTGGTCCACAGAGGCAAACTCACTaGCTGCACATTCATAGTAGGTACCTGTCAGCAGGG +
Preference number: 6 (lower is better)
Translates to: QTSGIGPQRQTH*LHIHSRYLSAG
Trigger: CCCTGCTGACAGGTACCTACTATGAATGTGCAGCAAGTGAGTTTGCCTCTGTGGACCAATACCCGATGTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS CAA 72 bp ATCTTGCCAGACATTTGGAGAGCAGGAGAGCAATGGTaGCCAAAACGACCAGAATCCAGCCCAGCATTTGTG +
Preference number: 6 (lower is better)
Translates to: ILPDIWRAGEQW*PKRPESSPAFV
Trigger: CACAAATGCTGGGCTGGATTCTGGTCGTTTTGGCAACCATTGCTCTCCTGCTCTCCAAATGTCTGGCAAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
CDS GCA 72 bp AAACATCGGGTATTGGTCCACAGAGGCAAACTCACTTaGTGCACATTCATAGTAGGTACCTGTCAGCAGGGT +
Preference number: 6 (lower is better)
Translates to: KHRVLVHRGKLT*CTFIVGTCQQG
Trigger: ACCCTGCTGACAGGTACCTACTATGAATGTGCAGCAAGTGAGTTTGCCTCTGTGGACCAATACCCGATGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS CCA 72 bp AACATCTTGCCAGACATTTGGAGAGCAGGAGAGCAATaGTTGCCAAAACGACCAGAATCCAGCCCAGCATTT +
Preference number: 6 (lower is better)
Translates to: NILPDIWRAGEQ*LPKRPESSPAF
Trigger: AAATGCTGGGCTGGATTCTGGTCGTTTTGGCAACCATTGCTCTCCTGCTCTCCAAATGTCTGGCAAGATGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
CDS CCA 72 bp CGTTTGCTAGGAGTGACATTAGCAAACATCGGGTATTaGTCCACAGAGGCAAACTCACTTGCTGCACATTCA +
Preference number: 6 (lower is better)
Translates to: RLLGVTLANIGY*STEANSLAAHS
Trigger: TGAATGTGCAGCAAGTGAGTTTGCCTCTGTGGACCAATACCCGATGTTTGCTAATGTCACTCCTAGCAAACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS CAA 72 bp TCGTTTGCTAGGAGTGACATTAGCAAACATCGGGTATaGGTCCACAGAGGCAAACTCACTTGCTGCACATTC +
Preference number: 6 (lower is better)
Translates to: SFARSDISKHRV*VHRGKLTCCTF
Trigger: GAATGTGCAGCAAGTGAGTTTGCCTCTGTGGACCAATACCCGATGTTTGCTAATGTCACTCCTAGCAAACGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS CAA 90 bp CATCTCTTCTCGTTTGCTAGGAGTGACATTAGCAAACATCGGGTATaGGTCCACAGAGGCAAACTCACTTGCTGCACATTCATAGTAGGT +
Preference number: 6 (lower is better)
Translates to: HLFSFARSDISKHRV*VHRGKLTCCTFIVG
Trigger: ACCTACTATGAATGTGCAGCAAGTGAGTTTGCCTCTGTGGACCAATACCCGATGTTTGCTAATGTCACTCCTAGCAAACGAGAAGAGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS CCA 72 bp GCCAAAACGACCAGAATCCAGCCCAGCATTTGTGACTaGTATCTGTGTAGAAGAGCCACTTCATCTCTTATT +
Preference number: 6 (lower is better)
Translates to: AKTTRIQPSICD*YLCRRATSSLI
Trigger: AATAAGAGATGAAGTGGCTCTTCTACACAGATACCAGTCACAAATGCTGGGCTGGATTCTGGTCGTTTTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000048052.7
CDS CAA 72 bp TGCTGTCCGCAAACAGTCAAAATCGCTATCAAAGAATaGATGCACGGTTCACTTCTGAGCAGAGAAGATGAA +
Preference number: 6 (lower is better)
Translates to: CCPQTVKIAIKE*MHGSLLSREDE
Trigger: TTCATCTTCTCTGCTCAGAAGTGAACCGTGCATCAATTCTTTGATAGCGATTTTGACTGTTTGCGGACAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS CAA 90 bp GAGAACAGTTGCTGTCCGCAAACAGTCAAAATCGCTATCAAAGAATaGATGCACGGTTCACTTCTGAGCAGAGAAGATGAAATACAGTTG +
Preference number: 6 (lower is better)
Translates to: ENSCCPQTVKIAIKE*MHGSLLSREDEIQL
Trigger: CAACTGTATTTCATCTTCTCTGCTCAGAAGTGAACCGTGCATCAATTCTTTGATAGCGATTTTGACTGTTTGCGGACAGCAACTGTTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS CAA 72 bp TTGACACGGACAACTGAATGTATAAGAGGAGAACAGTaGCTGTCCGCAAACAGTCAAAATCGCTATCAAAGA +
Preference number: 6 (lower is better)
Translates to: LTRTTECIRGEQ*LSANSQNRYQR
Trigger: TCTTTGATAGCGATTTTGACTGTTTGCGGACAGCAACTGTTCTCCTCTTATACATTCAGTTGTCCGTGTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2
CDS CAA 90 bp TTTTCCGACTTGACACGGACAACTGAATGTATAAGAGGAGAACAGTaGCTGTCCGCAAACAGTCAAAATCGCTATCAAAGAATTGATGCA +
Preference number: 6 (lower is better)
Translates to: FSDLTRTTECIRGEQ*LSANSQNRYQRIDA
Trigger: TGCATCAATTCTTTGATAGCGATTTTGACTGTTTGCGGACAGCAACTGTTCTCCTCTTATACATTCAGTTGTCCGTGTCAAGTCGGAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000048052.7
ENSMUST00000218239.2