RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CALHM3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094219

Ensembl transcript IDs: ENSMUST00000178630.2

Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CCTCCCGGAGCTCCGGGGGCTCCGAGGACTCCTGTGATTCTGGGATaGCACCAGCTGGGTCCCGACGTAACCCCAGGGCACGTAGCTCGC +
Preference number: 5 (lower is better)
Translates to: PPGAPGAPRTPVILG*HQLGPDVTPGHVAR
Trigger: GCGAGCTACGTGCCCTGGGGTTACGTCGGGACCCAGCTGGTGGCATCCCAGAATCACAGGAGTCCTCGGAGCCCCCGGAGCTCCGGGAGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 90 bp AGGGGCGCGGTGATTGAGGCCAGGCCCCCAGCGCCTGGGAGATGCTaGGAGGTCAAGCGGCGGCTTGCTGGAGTACCAGGTACTGAGGAG +
Preference number: 5 (lower is better)
Translates to: RGAVIEARPPAPGRC*EVKRRLAGVPGTEE
Trigger: CTCCTCAGTACCTGGTACTCCAGCAAGCCGCCGCTTGACCTCGCAGCATCTCCCAGGCGCTGGGGGCCTGGCCTCAATCACCGCGCCCCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS TCA 90 bp AGCTGGTGGCATAGCTTGGTGCCTGGAGCAGCTATAGGGGCGCGGTaGTTGAGGCCAGGCCCCCAGCGCCTGGGAGATGCTGCGAGGTCA +
Preference number: 5 (lower is better)
Translates to: SWWHSLVPGAAIGAR*LRPGPQRLGDAARS
Trigger: TGACCTCGCAGCATCTCCCAGGCGCTGGGGGCCTGGCCTCAATCACCGCGCCCCTATAGCTGCTCCAGGCACCAAGCTATGCCACCAGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 90 bp TATAGGGGCGCGGTGATTGAGGCCAGGCCCCCAGCGCCTGGGAGATaGTGCGAGGTCAAGCGGCGGCTTGCTGGAGTACCAGGTACTGAG +
Preference number: 5 (lower is better)
Translates to: YRGAVIEARPPAPGR*CEVKRRLAGVPGTE
Trigger: CTCAGTACCTGGTACTCCAGCAAGCCGCCGCTTGACCTCGCAGCATCTCCCAGGCGCTGGGGGCCTGGCCTCAATCACCGCGCCCCTATA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS TCA 90 bp GCGAGGTCAAGCGGCGGCTTGCTGGAGTACCAGGTACTGAGGAGTTaGTCCACCTGCTCCCGGCTGGAGATCGCGCGCAGATGGGCCTTC +
Preference number: 5 (lower is better)
Translates to: ARSSGGLLEYQVLRS*STCSRLEIARRWAF
Trigger: GAAGGCCCATCTGCGCGCGATCTCCAGCCGGGAGCAGGTGGATCAACTCCTCAGTACCTGGTACTCCAGCAAGCCGCCGCTTGACCTCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS TCA 90 bp GAGATGCTGCGAGGTCAAGCGGCGGCTTGCTGGAGTACCAGGTACTaGGGAGTTGATCCACCTGCTCCCGGCTGGAGATCGCGCGCAGAT +
Preference number: 5 (lower is better)
Translates to: EMLRGQAAACWSTRY*GVDPPAPGWRSRAD
Trigger: ATCTGCGCGCGATCTCCAGCCGGGAGCAGGTGGATCAACTCCTCAGTACCTGGTACTCCAGCAAGCCGCCGCTTGACCTCGCAGCATCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 90 bp CCACCAGCTGGGTCCCGACGTAACCCCAGGGCACGTAGCTCGCTCTaGATGTTTGCGAAGAAGTGCAGCACGCAACGGTGTGCGAAGTCC +
Preference number: 5 (lower is better)
Translates to: PPAGSRRNPRARSSL*MFAKKCSTQRCAKS
Trigger: GGACTTCGCACACCGTTGCGTGCTGCACTTCTTCGCAAACATGCAGAGCGAGCTACGTGCCCTGGGGTTACGTCGGGACCCAGCTGGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 90 bp AGCCGATGGCCTGTGACAGGCACCGGAGGTACCGAGACACTGCCTTaGGGGCAGGGCTGTTTTTCACCAGTTCATCCTCCTTGCAGGGCA +
Preference number: 5 (lower is better)
Translates to: SRWPVTGTGGTETLP*GQGCFSPVHPPCRA
Trigger: TGCCCTGCAAGGAGGATGAACTGGTGAAAAACAGCCCTGCCCGCAAGGCAGTGTCTCGGTACCTCCGGTGCCTGTCACAGGCCATCGGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 90 bp CGTAACCCCAGGGCACGTAGCTCGCTCTGCATGTTTGCGAAGAAGTaGAGCACGCAACGGTGTGCGAAGTCCCGCGCATGCTCACAGCAC +
Preference number: 5 (lower is better)
Translates to: RNPRARSSLCMFAKK*STQRCAKSRACSQH
Trigger: GTGCTGTGAGCATGCGCGGGACTTCGCACACCGTTGCGTGCTGCACTTCTTCGCAAACATGCAGAGCGAGCTACGTGCCCTGGGGTTACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 90 bp ACACTGCCTTGCGGGCAGGGCTGTTTTTCACCAGTTCATCCTCCTTaGAGGGCACCTTGGCTAGGAAGAGCTGCACTTGCCTGGGGGTCA +
Preference number: 5 (lower is better)
Translates to: TLPCGQGCFSPVHPP*RAPWLGRAALAWGS
Trigger: TGACCCCCAGGCAAGTGCAGCTCTTCCTAGCCAAGGTGCCCTGCAAGGAGGATGAACTGGTGAAAAACAGCCCTGCCCGCAAGGCAGTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 90 bp ACAGAAGAACACATGTACCTGATGATGCCCAGGTCCTTCCTCCGGTaGCCTGCTGGCCGGCGCCACTCCTCCACCATCAATACAGACTGT +
Preference number: 5 (lower is better)
Translates to: TEEHMYLMMPRSFLR*PAGRRHSSTINTDC
Trigger: ACAGTCTGTATTGATGGTGGAGGAGTGGCGCCGGCCAGCAGGGCACCGGAGGAAGGACCTGGGCATCATCAGGTACATGTGTTCTTCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS CCA 90 bp ACACATGTACCTGATGATGCCCAGGTCCTTCCTCCGGTGCCCTGCTaGCCGGCGCCACTCCTCCACCATCAATACAGACTGTCTATTGAC +
Preference number: 5 (lower is better)
Translates to: THVPDDAQVLPPVPC*PAPLLHHQYRLSID
Trigger: GTCAATAGACAGTCTGTATTGATGGTGGAGGAGTGGCGCCGGCCAGCAGGGCACCGGAGGAAGGACCTGGGCATCATCAGGTACATGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 90 bp AGAACACATGTACCTGATGATGCCCAGGTCCTTCCTCCGGTGCCCTaGTGGCCGGCGCCACTCCTCCACCATCAATACAGACTGTCTATT +
Preference number: 5 (lower is better)
Translates to: RTHVPDDAQVLPPVP*WPAPLLHHQYRLSI
Trigger: AATAGACAGTCTGTATTGATGGTGGAGGAGTGGCGCCGGCCAGCAGGGCACCGGAGGAAGGACCTGGGCATCATCAGGTACATGTGTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 90 bp AGGAGGGCCAGTAAGATCCAGACCAGTGGTGCTGCTAAAGCTCGCTaGAGCACAGAAGAACACATGTACCTGATGATGCCCAGGTCCTTC +
Preference number: 5 (lower is better)
Translates to: RRASKIQTSGAAKAR*STEEHMYLMMPRSF
Trigger: GAAGGACCTGGGCATCATCAGGTACATGTGTTCTTCTGTGCTGCAGCGAGCTTTAGCAGCACCACTGGTCTGGATCTTACTGGCCCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 90 bp TTTGCGAAGAAGTGCAGCACGCAACGGTGTGCGAAGTCCCGCGCATaGTCACAGCACGTCTCATCAAAGAGCTTCTGTTCCAGGTCCATA +
Preference number: 5 (lower is better)
Translates to: FAKKCSTQRCAKSRA*SQHVSSKSFCSRSI
Trigger: TATGGACCTGGAACAGAAGCTCTTTGATGAGACGTGCTGTGAGCATGCGCGGGACTTCGCACACCGTTGCGTGCTGCACTTCTTCGCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 90 bp CATCAAAGAGCTTCTGTTCCAGGTCCATATAGTTGCTCCAGTATCTaGGCTGTAGGAAGACGGTCTGGTCGAAGCAGGGTCTCAGACAGC +
Preference number: 5 (lower is better)
Translates to: HQRASVPGPYSCSSI*AVGRRSGRSRVSDS
Trigger: GCTGTCTGAGACCCTGCTTCGACCAGACCGTCTTCCTACAGCGCAGATACTGGAGCAACTATATGGACCTGGAACAGAAGCTCTTTGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 90 bp CACAGCACGTCTCATCAAAGAGCTTCTGTTCCAGGTCCATATAGTTaGTCCAGTATCTGCGCTGTAGGAAGACGGTCTGGTCGAAGCAGG +
Preference number: 5 (lower is better)
Translates to: HSTSHQRASVPGPYS*SSICAVGRRSGRSR
Trigger: CCTGCTTCGACCAGACCGTCTTCCTACAGCGCAGATACTGGAGCAACTATATGGACCTGGAACAGAAGCTCTTTGATGAGACGTGCTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 90 bp AGTTCATCCTCCTTGCAGGGCACCTTGGCTAGGAAGAGCTGCACTTaGCTGGGGGTCATATTAGCAAAATCCAGAAACTTCTCAGGGTCA +
Preference number: 5 (lower is better)
Translates to: SSSSLQGTLARKSCT*LGVILAKSRNFSGS
Trigger: TGACCCTGAGAAGTTTCTGGATTTTGCTAATATGACCCCCAGGCAAGTGCAGCTCTTCCTAGCCAAGGTGCCCTGCAAGGAGGATGAACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS TCA 72 bp CATAGCTTGGTGCCTGGAGCAGCTATAGGGGCGCGGTaGTTGAGGCCAGGCCCCCAGCGCCTGGGAGATGCT +
Preference number: 6 (lower is better)
Translates to: HSLVPGAAIGAR*LRPGPQRLGDA
Trigger: AGCATCTCCCAGGCGCTGGGGGCCTGGCCTCAATCACCGCGCCCCTATAGCTGCTCCAGGCACCAAGCTATG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS TCA 72 bp AGCGGCGGCTTGCTGGAGTACCAGGTACTGAGGAGTTaGTCCACCTGCTCCCGGCTGGAGATCGCGCGCAGA +
Preference number: 6 (lower is better)
Translates to: SGGLLEYQVLRS*STCSRLEIARR
Trigger: TCTGCGCGCGATCTCCAGCCGGGAGCAGGTGGATCAACTCCTCAGTACCTGGTACTCCAGCAAGCCGCCGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS CAA 72 bp AAGCGGCGGCTTGCTGGAGTACCAGGTACTGAGGAGTaGATCCACCTGCTCCCGGCTGGAGATCGCGCGCAG +
Preference number: 6 (lower is better)
Translates to: KRRLAGVPGTEE*IHLLPAGDRAQ
Trigger: CTGCGCGCGATCTCCAGCCGGGAGCAGGTGGATCAACTCCTCAGTACCTGGTACTCCAGCAAGCCGCCGCTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS CAA 90 bp TGCGAGGTCAAGCGGCGGCTTGCTGGAGTACCAGGTACTGAGGAGTaGATCCACCTGCTCCCGGCTGGAGATCGCGCGCAGATGGGCCTT +
Preference number: 6 (lower is better)
Translates to: CEVKRRLAGVPGTEE*IHLLPAGDRAQMGL
Trigger: AAGGCCCATCTGCGCGCGATCTCCAGCCGGGAGCAGGTGGATCAACTCCTCAGTACCTGGTACTCCAGCAAGCCGCCGCTTGACCTCGCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS CAA 90 bp CTGGGTCCCGACGTAACCCCAGGGCACGTAGCTCGCTCTGCATGTTaGCGAAGAAGTGCAGCACGCAACGGTGTGCGAAGTCCCGCGCAT +
Preference number: 6 (lower is better)
Translates to: LGPDVTPGHVARSAC*RRSAARNGVRSPAH
Trigger: ATGCGCGGGACTTCGCACACCGTTGCGTGCTGCACTTCTTCGCAAACATGCAGAGCGAGCTACGTGCCCTGGGGTTACGTCGGGACCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS TCA 72 bp CGAGGTCAAGCGGCGGCTTGCTGGAGTACCAGGTACTaGGGAGTTGATCCACCTGCTCCCGGCTGGAGATCG +
Preference number: 6 (lower is better)
Translates to: RGQAAACWSTRY*GVDPPAPGWRS
Trigger: CGATCTCCAGCCGGGAGCAGGTGGATCAACTCCTCAGTACCTGGTACTCCAGCAAGCCGCCGCTTGACCTCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 72 bp CACATGTACCTGATGATGCCCAGGTCCTTCCTCCGGTaGCCTGCTGGCCGGCGCCACTCCTCCACCATCAAT +
Preference number: 6 (lower is better)
Translates to: HMYLMMPRSFLR*PAGRRHSSTIN
Trigger: ATTGATGGTGGAGGAGTGGCGCCGGCCAGCAGGGCACCGGAGGAAGGACCTGGGCATCATCAGGTACATGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 72 bp AGGGCACGTAGCTCGCTCTGCATGTTTGCGAAGAAGTaGAGCACGCAACGGTGTGCGAAGTCCCGCGCATGC +
Preference number: 6 (lower is better)
Translates to: RARSSLCMFAKK*STQRCAKSRAC
Trigger: GCATGCGCGGGACTTCGCACACCGTTGCGTGCTGCACTTCTTCGCAAACATGCAGAGCGAGCTACGTGCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 72 bp GGGTCCCGACGTAACCCCAGGGCACGTAGCTCGCTCTaGATGTTTGCGAAGAAGTGCAGCACGCAACGGTGT +
Preference number: 6 (lower is better)
Translates to: GSRRNPRARSSL*MFAKKCSTQRC
Trigger: ACACCGTTGCGTGCTGCACTTCTTCGCAAACATGCAGAGCGAGCTACGTGCCCTGGGGTTACGTCGGGACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS CAA 90 bp GACACTGCCTTGCGGGCAGGGCTGTTTTTCACCAGTTCATCCTCCTaGCAGGGCACCTTGGCTAGGAAGAGCTGCACTTGCCTGGGGGTC +
Preference number: 6 (lower is better)
Translates to: DTALRAGLFFTSSSS*QGTLARKSCTCLGV
Trigger: GACCCCCAGGCAAGTGCAGCTCTTCCTAGCCAAGGTGCCCTGCAAGGAGGATGAACTGGTGAAAAACAGCCCTGCCCGCAAGGCAGTGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 72 bp TGCGGGCAGGGCTGTTTTTCACCAGTTCATCCTCCTTaGAGGGCACCTTGGCTAGGAAGAGCTGCACTTGCC +
Preference number: 6 (lower is better)
Translates to: CGQGCFSPVHPP*RAPWLGRAALA
Trigger: GGCAAGTGCAGCTCTTCCTAGCCAAGGTGCCCTGCAAGGAGGATGAACTGGTGAAAAACAGCCCTGCCCGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 72 bp CTGCATGTTTGCGAAGAAGTGCAGCACGCAACGGTGTaGGAAGTCCCGCGCATGCTCACAGCACGTCTCATC +
Preference number: 6 (lower is better)
Translates to: LHVCEEVQHATV*EVPRMLTARLI
Trigger: GATGAGACGTGCTGTGAGCATGCGCGGGACTTCGCACACCGTTGCGTGCTGCACTTCTTCGCAAACATGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS CAA 72 bp GACGTAACCCCAGGGCACGTAGCTCGCTCTGCATGTTaGCGAAGAAGTGCAGCACGCAACGGTGTGCGAAGT +
Preference number: 6 (lower is better)
Translates to: DVTPGHVARSAC*RRSAARNGVRS
Trigger: ACTTCGCACACCGTTGCGTGCTGCACTTCTTCGCAAACATGCAGAGCGAGCTACGTGCCCTGGGGTTACGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 72 bp AAGTGCAGCACGCAACGGTGTGCGAAGTCCCGCGCATaGTCACAGCACGTCTCATCAAAGAGCTTCTGTTCC +
Preference number: 6 (lower is better)
Translates to: KCSTQRCAKSRA*SQHVSSKSFCS
Trigger: GGAACAGAAGCTCTTTGATGAGACGTGCTGTGAGCATGCGCGGGACTTCGCACACCGTTGCGTGCTGCACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS CAA 72 bp CGGCGCCACTCCTCCACCATCAATACAGACTGTCTATaGACCAAGAGACCACAGAGGAAGAGGGCCAGAGGG +
Preference number: 6 (lower is better)
Translates to: RRHSSTINTDCL*TKRPQRKRARG
Trigger: CCCTCTGGCCCTCTTCCTCTGTGGTCTCTTGGTCAATAGACAGTCTGTATTGATGGTGGAGGAGTGGCGCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 72 bp GCTTCTGTTCCAGGTCCATATAGTTGCTCCAGTATCTaGGCTGTAGGAAGACGGTCTGGTCGAAGCAGGGTC +
Preference number: 6 (lower is better)
Translates to: ASVPGPYSCSSI*AVGRRSGRSRV
Trigger: GACCCTGCTTCGACCAGACCGTCTTCCTACAGCGCAGATACTGGAGCAACTATATGGACCTGGAACAGAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 72 bp TCATCCTCCTTGCAGGGCACCTTGGCTAGGAAGAGCTaGACTTGCCTGGGGGTCATATTAGCAAAATCCAGA +
Preference number: 6 (lower is better)
Translates to: SSSLQGTLARKS*TCLGVILAKSR
Trigger: TCTGGATTTTGCTAATATGACCCCCAGGCAAGTGCAGCTCTTCCTAGCCAAGGTGCCCTGCAAGGAGGATGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS CAA 90 bp AACTTCTCAGGGTCAACAGAGTTGCTGAAGGCACACACAAAACACTaGCCATCAAGGAGGGCCAGTAAGATCCAGACCAGTGGTGCTGCT +
Preference number: 6 (lower is better)
Translates to: NFSGSTELLKAHTKH*PSRRASKIQTSGAA
Trigger: AGCAGCACCACTGGTCTGGATCTTACTGGCCCTCCTTGATGGCAAGTGTTTTGTGTGTGCCTTCAGCAACTCTGTTGACCCTGAGAAGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 72 bp AGTAAGATCCAGACCAGTGGTGCTGCTAAAGCTCGCTaGAGCACAGAAGAACACATGTACCTGATGATGCCC +
Preference number: 6 (lower is better)
Translates to: SKIQTSGAAKAR*STEEHMYLMMP
Trigger: GGGCATCATCAGGTACATGTGTTCTTCTGTGCTGCAGCGAGCTTTAGCAGCACCACTGGTCTGGATCTTACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 72 bp TCCTTGCAGGGCACCTTGGCTAGGAAGAGCTGCACTTaGCTGGGGGTCATATTAGCAAAATCCAGAAACTTC +
Preference number: 6 (lower is better)
Translates to: SLQGTLARKSCT*LGVILAKSRNF
Trigger: GAAGTTTCTGGATTTTGCTAATATGACCCCCAGGCAAGTGCAGCTCTTCCTAGCCAAGGTGCCCTGCAAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS CAA 72 bp GGGTCAACAGAGTTGCTGAAGGCACACACAAAACACTaGCCATCAAGGAGGGCCAGTAAGATCCAGACCAGT +
Preference number: 6 (lower is better)
Translates to: GSTELLKAHTKH*PSRRASKIQTS
Trigger: ACTGGTCTGGATCTTACTGGCCCTCCTTGATGGCAAGTGTTTTGTGTGTGCCTTCAGCAACTCTGTTGACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS GCA 72 bp TCTCATCAAAGAGCTTCTGTTCCAGGTCCATATAGTTaGTCCAGTATCTGCGCTGTAGGAAGACGGTCTGGT +
Preference number: 6 (lower is better)
Translates to: SHQRASVPGPYS*SSICAVGRRSG
Trigger: ACCAGACCGTCTTCCTACAGCGCAGATACTGGAGCAACTATATGGACCTGGAACAGAAGCTCTTTGATGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2
CDS CAA 72 bp TTAGCAAAATCCAGAAACTTCTCAGGGTCAACAGAGTaGCTGAAGGCACACACAAAACACTTGCCATCAAGG +
Preference number: 6 (lower is better)
Translates to: LAKSRNFSGSTE*LKAHTKHLPSR
Trigger: CCTTGATGGCAAGTGTTTTGTGTGTGCCTTCAGCAACTCTGTTGACCCTGAGAAGTTTCTGGATTTTGCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178630.2