RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CALHM2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033033

Ensembl transcript IDs: ENSMUST00000035822.2, ENSMUST00000140512.8

Found 173 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGCAGAGCTCATGGAGGGTTCTGAAGGCCTGCTGCTGCAGGAGGTaGCAGACACGTGTGATTTCCCACCAGGTGGTAAAGGTGGCAGTG +
Preference number: 1 (lower is better)
Translates to: LQSSWRVLKACCCRR*QTRVISHQVVKVAV
Trigger: CACTGCCACCTTTACCACCTGGTGGGAAATCACACGTGTCTGTCACCTCCTGCAGCAGCAGGCCTTCAGAACCCTCCATGAGCTCTGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR GCA 90 bp CCCGGACCCAGAGACGGTCTTTTACACTGGCCAGGTAACCCTTCCTaGACAGGCCTCCCGCCCTTAGTGACTGTGAACGCAGGTTTAAAG +
Preference number: 1 (lower is better)
Translates to: PGPRDGLLHWPGNPS*TGLPPLVTVNAGLK
Trigger: CTTTAAACCTGCGTTCACAGTCACTAAGGGCGGGAGGCCTGTGCAGGAAGGGTTACCTGGCCAGTGTAAAAGACCGTCTCTGGGTCCGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR TCA 90 bp GCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTaGGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAGA +
Preference number: 1 (lower is better)
Translates to: AVSLPRRGCSCPSDC*VTRGQRIRVLRAVR
Trigger: TCTGACTGCTCTCAACACCCGGATCCTTTGGCCGCGAGTCACTCAACAGTCTGAAGGACAGGAGCATCCTCTCCTTGGAAGGCTCACAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR GCA 90 bp CCAAACTGTCTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTaGAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCA +
Preference number: 1 (lower is better)
Translates to: PNCLSSPAMRVPSLA*RRTVLSYGSRTMAA
Trigger: TGCAGCCATAGTCCTTGACCCGTATGATAACACCGTGCGTCTGCAGGCCAGGCTTGGCACCCTCATAGCAGGTGATGAGAGACAGTTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR GCA 90 bp GTGTCCCAGACACTGGGAAGTAGCTCAGTGGGTAAAGGTGCTTGCTaGAGCCCGAGTCAAGTTCCCTGGTCCCTCATAGTGAAGGAAGAG +
Preference number: 1 (lower is better)
Translates to: VSQTLGSSSVGKGAC*SPSQVPWSLIVKEE
Trigger: CTCTTCCTTCACTATGAGGGACCAGGGAACTTGACTCGGGCTGCAGCAAGCACCTTTACCCACTGAGCTACTTCCCAGTGTCTGGGACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR CCA 90 bp GCCTGGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATaGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCC +
Preference number: 1 (lower is better)
Translates to: AWPADARCYHTGQGL*LHCEVLQRCAGASA
Trigger: GGCACTAGCCCCTGCACATCGTTGTAGAACTTCACAATGCAGCCATAGTCCTTGACCCGTATGATAACACCGTGCGTCTGCAGGCCAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR TCA 90 bp GTGTCGGATGCCGGGAATCAAGACAGACAGGAAGAAGGTGAGGTTTaGGAGAGTGGAGCTAGTCGATGCAGGGCTGAGAAGGGAGAAGAG +
Preference number: 1 (lower is better)
Translates to: VSDAGNQDRQEEGEV*ESGASRCRAEKGEE
Trigger: CTCTTCTCCCTTCTCAGCCCTGCATCGACTAGCTCCACTCTCTCAAACCTCACCTTCTTCCTGTCTGTCTTGATTCCCGGCATCCGACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
3UTR TCA 90 bp ACGTGTGATTTCCCACCAGGTGGTAAAGGTGGCAGTGCTGAGCTGTaGGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTGAG +
Preference number: 1 (lower is better)
Translates to: TCDFPPGGKGGSAEL*AFQGEDAPVLQTVE
Trigger: CTCAACAGTCTGAAGGACAGGAGCATCCTCTCCTTGGAAGGCTCACAGCTCAGCACTGCCACCTTTACCACCTGGTGGGAAATCACACGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR GCA 90 bp GAAGAGAACCTTGCTCTGAGCTGTGCACACATACATCATGCCACCTaGATACCTCCCCCACCCCAATCATACATGCACCATGGCGTGTCC +
Preference number: 1 (lower is better)
Translates to: EENLALSCAHIHHAT*IPPPPQSYMHHGVS
Trigger: GGACACGCCATGGTGCATGTATGATTGGGGTGGGGGAGGTATGCAGGTGGCATGATGTATGTGTGCACAGCTCAGAGCAAGGTTCTCTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR CCA 90 bp CTCAGTGAGATTGTCAAGAGACTCAGCCCTTGGGCATCACCTTTGTaGTCTCCTTTAGTGCCATCTCCCCTCACGTTGGGCTGTATGCCC +
Preference number: 1 (lower is better)
Translates to: LSEIVKRLSPWASPL*SPLVPSPLTLGCMP
Trigger: GGGCATACAGCCCAACGTGAGGGGAGATGGCACTAAAGGAGACCACAAAGGTGATGCCCAAGGGCTGAGTCTCTTGACAATCTCACTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
3UTR CCA 90 bp GAGCAGTCAGAAGAAAACAGGAGCTGTGCGCATCGGGCAGGTACCTaGGCAGTGACCTTGTCTTACAGTGACAGTGTTCCTGGAGAGGAA +
Preference number: 1 (lower is better)
Translates to: EQSEENRSCAHRAGT*AVTLSYSDSVPGEE
Trigger: TTCCTCTCCAGGAACACTGTCACTGTAAGACAAGGTCACTGCCCAGGTACCTGCCCGATGCGCACAGCTCCTGTTTTCTTCTGACTGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR GCA 90 bp GGCCTGCAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTaGATTGTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAG +
Preference number: 1 (lower is better)
Translates to: GLQTHGVIIRVKDYG*IVKFYNDVQGLVPK
Trigger: CTTAGGCACTAGCCCCTGCACATCGTTGTAGAACTTCACAATGCAGCCATAGTCCTTGACCCGTATGATAACACCGTGCGTCTGCAGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR GCA 90 bp CCCGAGTCAAGTTCCCTGGTCCCTCATAGTGAAGGAAGAGAACCTTaGTCTGAGCTGTGCACACATACATCATGCCACCTGCATACCTCC +
Preference number: 1 (lower is better)
Translates to: PESSSLVPHSEGREP*SELCTHTSCHLHTS
Trigger: GGAGGTATGCAGGTGGCATGATGTATGTGTGCACAGCTCAGAGCAAGGTTCTCTTCCTTCACTATGAGGGACCAGGGAACTTGACTCGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR GCA 90 bp AAAGTGTCCCAGACACTGGGAAGTAGCTCAGTGGGTAAAGGTGCTTaGTGCAGCCCGAGTCAAGTTCCCTGGTCCCTCATAGTGAAGGAA +
Preference number: 1 (lower is better)
Translates to: KVSQTLGSSSVGKGA*CSPSQVPWSLIVKE
Trigger: TTCCTTCACTATGAGGGACCAGGGAACTTGACTCGGGCTGCAGCAAGCACCTTTACCCACTGAGCTACTTCCCAGTGTCTGGGACACTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR GCA 90 bp AGTGAAGGAAGAGAACCTTGCTCTGAGCTGTGCACACATACATCATaGCACCTGCATACCTCCCCCACCCCAATCATACATGCACCATGG +
Preference number: 1 (lower is better)
Translates to: SEGREPCSELCTHTS*HLHTSPTPIIHAPW
Trigger: CCATGGTGCATGTATGATTGGGGTGGGGGAGGTATGCAGGTGGCATGATGTATGTGTGCACAGCTCAGAGCAAGGTTCTCTTCCTTCACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR TCA 90 bp TTCGGGTTCCTGAGGTGGCACACCAGTGGCTGTCTTGCTAACAGATaGCTTGTTGATAGCCTTTGTCTTTCCCGTAGGTTTTGCTCTGTG +
Preference number: 1 (lower is better)
Translates to: FGFLRWHTSGCLANR*LVDSLCLSRRFCSV
Trigger: CACAGAGCAAAACCTACGGGAAAGACAAAGGCTATCAACAAGTCATCTGTTAGCAAGACAGCCACTGGTGTGCCACCTCAGGAACCCGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR CCA 90 bp AAAGTCTTATTTAAAAAGTGTCCCAGACACTGGGAAGTAGCTCAGTaGGTAAAGGTGCTTGCTGCAGCCCGAGTCAAGTTCCCTGGTCCC +
Preference number: 1 (lower is better)
Translates to: KVLFKKCPRHWEVAQ*VKVLAAARVKFPGP
Trigger: GGGACCAGGGAACTTGACTCGGGCTGCAGCAAGCACCTTTACCCACTGAGCTACTTCCCAGTGTCTGGGACACTTTTTAAATAAGACTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR TCA 90 bp AAAAGATTTGCAGCTGCAATTATTAGAGATAAAAGGTCTTTGGAGTaGCCTATGGCCTTCGGGTTCCTGAGGTGGCACACCAGTGGCTGT +
Preference number: 1 (lower is better)
Translates to: KRFAAAIIRDKRSLE*PMAFGFLRWHTSGC
Trigger: ACAGCCACTGGTGTGCCACCTCAGGAACCCGAAGGCCATAGGTCACTCCAAAGACCTTTTATCTCTAATAATTGCAGCTGCAAATCTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR CCA 90 bp GCGTGTCCATGCCTCCCACTCTCCTACATACAAACACAAACACCATaGCGCTTATATGCCCTTGGACACACACAACAAATTAACTTCATT +
Preference number: 1 (lower is better)
Translates to: ACPCLPLSYIQTQTP*RLYALGHTQQINFI
Trigger: AATGAAGTTAATTTGTTGTGTGTGTCCAAGGGCATATAAGCGCCATGGTGTTTGTGTTTGTATGTAGGAGAGTGGGAGGCATGGACACGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR TCA 90 bp GCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAGGTAACCCTTCCTGCGGCAGTGCTGAGCTGTaGGCCTTCCAAGGAGAGGAT +
Preference number: 2 (lower is better)
Translates to: AHPGPRDGLLHWPGNPSCGSAEL*AFQGED
Trigger: ATCCTCTCCTTGGAAGGCTCACAGCTCAGCACTGCC...GCAGGAAGGGTTACCTGGCCAGTGTAAAAGACCGTCTCTGGGTCCGGGATGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR CCA 90 bp GCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAGGTAACCCTTCCTGCCTGGAATCCAGTGGATaGAGGCCCACACCAGAGAAG +
Preference number: 2 (lower is better)
Translates to: AHPGPRDGLLHWPGNPSCLESSG*RPTPEK
Trigger: CTTCTCTGGTGTGGGCCTCCATCCACTGGATTCCAG...GCAGGAAGGGTTACCTGGCCAGTGTAAAAGACCGTCTCTGGGTCCGGGATGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR CAA 90 bp AGCTGTGAGCCTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTaGAGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGAGCAGTCAG +
Preference number: 2 (lower is better)
Translates to: SCEPSKERMLLSFRL*SDSRPKDPGVESSQ
Trigger: CTGACTGCTCTCAACACCCGGATCCTTTGGCCGCGAGTCACTCAACAGTCTGAAGGACAGGAGCATCCTCTCCTTGGAAGGCTCACAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR TCA 90 bp GTCTTTGGAGTGACCTATGGCCTTCGGGTTCCTGAGGTGGCACACCAGTGGCTGCAGGTACCTGGGCAGTaGCCTTGTCTTACAGTGACA +
Preference number: 2 (lower is better)
Translates to: VFGVTYGLRVPEVAHQWLQVPGQ*PCLTVT
Trigger: TGTCACTGTAAGACAAGGTCACTGCCCAGGTACCTG...CAGCCACTGGTGTGCCACCTCAGGAACCCGAAGGCCATAGGTCACTCCAAAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR CAA 90 bp AGGACCTGGAGTGATGAGGCAGTGGGCATGCGTTCCTGGTTCTGCTaGGTCCTGGTACTGATAGTTGGCTTCAGTGCCTCCTGTGTGCTA +
Preference number: 2 (lower is better)
Translates to: RTWSDEAVGMRSWFC*VLVLIVGFSASCVL
Trigger: TAGCACACAGGAGGCACTGAAGCCAACTATCAGTACCAGGACCAAGCAGAACCAGGAACGCATGCCCACTGCCTCATCACTCCAGGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR GCA 90 bp AGTTCCCTGGTCCCTCATAGTGAAGGAAGAGAACCTTGCTCTGAGCTGTGCACAGATCTCCCGGGTCCCTaGAGAGCTCATGGAGGGTTC +
Preference number: 2 (lower is better)
Translates to: SSLVPHSEGREPCSELCTDLPGP*RAHGGF
Trigger: GAACCCTCCATGAGCTCTGCAGGGACCCGGGAGATC...TGTGCACAGCTCAGAGCAAGGTTCTCTTCCTTCACTATGAGGGACCAGGGAACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR CCA 90 bp AGTTCCCTGGTCCCTCATAGTGAAGGAAGAGAACCTTGCTCTGAGCTGTGCACATCCCTGCAGAGCTCATaGAGGGTTCTGAAGGCCTGC +
Preference number: 2 (lower is better)
Translates to: SSLVPHSEGREPCSELCTSLQSS*RVLKAC
Trigger: GCAGGCCTTCAGAACCCTCCATGAGCTCTGCAGGGA...TGTGCACAGCTCAGAGCAAGGTTCTCTTCCTTCACTATGAGGGACCAGGGAACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR TCA 90 bp ATGGAGGGTTCTGAAGGCCTGCTGCTGCAGGAGGTGACAGACACGTGTGATTTCGACCTTGTCTTACAGTaGCAGTGTTCCTGGAGAGGA +
Preference number: 2 (lower is better)
Translates to: MEGSEGLLLQEVTDTCDFDLVLQ*QCSWRG
Trigger: TCCTCTCCAGGAACACTGTCACTGTAAGACAAGGTC...GAAATCACACGTGTCTGTCACCTCCTGCAGCAGCAGGCCTTCAGAACCCTCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR TCA 90 bp CAAGTTCCCTGGTCCCTCATAGTGAAGGAAGAGAACCTTGCTCTGAGCTGTGCAAACAAGGTTACAAGGTaGCTCAGCAGGCCTGAGGCG +
Preference number: 2 (lower is better)
Translates to: QVPWSLIVKEENLALSCANKVTR*LSRPEA
Trigger: CGCCTCAGGCCTGCTGAGTCACCTTGTAACCTTGTT...TGCACAGCTCAGAGCAAGGTTCTCTTCCTTCACTATGAGGGACCAGGGAACTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR GCA 90 bp TGGCTGTGTCGGATGCCGGGAATCAAGACAGACAGGAAGAAGGTGAGGTTTGAGCACTGGGAGCTGGGGTaGTCCTATGCAATTAGACAC +
Preference number: 2 (lower is better)
Translates to: WLCRMPGIKTDRKKVRFEHWELG*SYAIRH
Trigger: GTGTCTAATTGCATAGGAGCACCCCAGCTCCCAGTG...CTCAAACCTCACCTTCTTCCTGTCTGTCTTGATTCCCGGCATCCGACACAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
3UTR-3UTR GCA 90 bp TGGCTGTGTCGGATGCCGGGAATCAAGACAGACAGGAAGAAGGTGAGGTTTGAGAGTGGAGCTAGTCGATaGAGGGCTGAGAAGGGAGAA +
Preference number: 2 (lower is better)
Translates to: WLCRMPGIKTDRKKVRFESGASR*RAEKGE
Trigger: TTCTCCCTTCTCAGCCCTGCATCGACTAGCTCCACT...CTCAAACCTCACCTTCTTCCTGTCTGTCTTGATTCCCGGCATCCGACACAGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
3UTR CAA 90 bp GGCCAGGCTGCCTCTCCTCAGGTTAAATCAGGTAACTCAGTGAGATaGTCAAGAGACTCAGCCCTTGGGCATCACCTTTGTGGTCTCCTT +
Preference number: 2 (lower is better)
Translates to: GQAASPQVKSGNSVR*SRDSALGHHLCGLL
Trigger: AAGGAGACCACAAAGGTGATGCCCAAGGGCTGAGTCTCTTGACAATCTCACTGAGTTACCTGATTTAACCTGAGGAGAGGCAGCCTGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
3UTR-3UTR TCA 90 bp ATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGTGCTGCTGCAGGAGGTaGCAGACACGTGTGATTTCC +
Preference number: 2 (lower is better)
Translates to: IRVKDYGCIVKFYNDVQGCCCRR*QTRVIS
Trigger: GGAAATCACACGTGTCTGTCACCTCCTGCAGCAGCA...CCCCTGCACATCGTTGTAGAACTTCACAATGCAGCCATAGTCCTTGACCCGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR GCA 90 bp CAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCAGAAAACAGGAGCTGTaGGCATCGGGCAGGTACCTG +
Preference number: 2 (lower is better)
Translates to: QTHGVIIRVKDYGCIVKFRKQEL*ASGRYL
Trigger: CAGGTACCTGCCCGATGCGCACAGCTCCTGTTTTCT...GAACTTCACAATGCAGCCATAGTCCTTGACCCGTATGATAACACCGTGCGTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR CCA 90 bp AGTTCCCTGGTCCCTCATAGTGAAGGAAGAGAACCTTGCTCTGAGCTGTGCACAATCATACATGCACCATaGCGTGTCCATGCCTCCCAC +
Preference number: 2 (lower is better)
Translates to: SSLVPHSEGREPCSELCTIIHAP*RVHASH
Trigger: GTGGGAGGCATGGACACGCCATGGTGCATGTATGAT...TGTGCACAGCTCAGAGCAAGGTTCTCTTCCTTCACTATGAGGGACCAGGGAACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR TCA 90 bp GCTTGCTGCAGCCCGAGTCAAGTTCCCTGGTCCCTCATAGTGAAGGAAGAGAACACTATGGCTGCATTGTaGAGTTCTACAACGATGTGC +
Preference number: 2 (lower is better)
Translates to: ACCSPSQVPWSLIVKEENTMAAL*SSTTMC
Trigger: GCACATCGTTGTAGAACTTCACAATGCAGCCATAGT...GTTCTCTTCCTTCACTATGAGGGACCAGGGAACTTGACTCGGGCTGCAGCAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR TCA 90 bp CAAGTTCCCTGGTCCCTCATAGTGAAGGAAGAGAACCTTGCTCTGAGCTGTGCAAAAGGATCCGGGTGTTaGGAGCAGTCAGAAGAAAAC +
Preference number: 2 (lower is better)
Translates to: QVPWSLIVKEENLALSCAKGSGC*EQSEEN
Trigger: GTTTTCTTCTGACTGCTCTCAACACCCGGATCCTTT...TGCACAGCTCAGAGCAAGGTTCTCTTCCTTCACTATGAGGGACCAGGGAACTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR GCA 90 bp ATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGCTTCCAAGGAGAGGATaGTCCTGTCCTTCAGACTGT +
Preference number: 2 (lower is better)
Translates to: IRVKDYGCIVKFYNDVQGLPRRG*SCPSDC
Trigger: ACAGTCTGAAGGACAGGAGCATCCTCTCCTTGGAAG...CCCCTGCACATCGTTGTAGAACTTCACAATGCAGCCATAGTCCTTGACCCGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR GCA 90 bp AGTTCCCTGGTCCCTCATAGTGAAGGAAGAGAACCTTGCTCTGAGCTGTGCACAATGCGTTCCTGGTTCTaGTTGGTCCTGGTACTGATA +
Preference number: 2 (lower is better)
Translates to: SSLVPHSEGREPCSELCTMRSWF*LVLVLI
Trigger: TATCAGTACCAGGACCAAGCAGAACCAGGAACGCAT...TGTGCACAGCTCAGAGCAAGGTTCTCTTCCTTCACTATGAGGGACCAGGGAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR CCA 90 bp TATGTATACAAAGGGCCCTGCATAGGACCTGGAGTGATGAGGCAGTGGGCATGCACGGGTCAAGGACTATaGCTGCATTGTGAAGTTCTA +
Preference number: 2 (lower is better)
Translates to: YVYKGPCIGPGVMRQWACTGQGL*LHCEVL
Trigger: TAGAACTTCACAATGCAGCCATAGTCCTTGACCCGT...GCATGCCCACTGCCTCATCACTCCAGGTCCTATGCAGGGCCCTTTGTATACATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR GCA 90 bp AGTTCCCTGGTCCCTCATAGTGAAGGAAGAGAACCTTGCTCTGAGCTGTGCACAGTCAAGGACTATGGCTaGATTGTGAAGTTCTACAAC +
Preference number: 2 (lower is better)
Translates to: SSLVPHSEGREPCSELCTVKDYG*IVKFYN
Trigger: GTTGTAGAACTTCACAATGCAGCCATAGTCCTTGAC...TGTGCACAGCTCAGAGCAAGGTTCTCTTCCTTCACTATGAGGGACCAGGGAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR CCA 90 bp AGTTTTCTATGGGAAATGGCTGTGTCGGATGCCGGGAATCAAGACAGACAGGAATGGGCATCACCTTTGTaGTCTCCTTTAGTGCCATCT +
Preference number: 2 (lower is better)
Translates to: SFLWEMAVSDAGNQDRQEWASPL*SPLVPS
Trigger: AGATGGCACTAAAGGAGACCACAAAGGTGATGCCCA...TTCCTGTCTGTCTTGATTCCCGGCATCCGACACAGCCATTTCCCATAGAAAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
3UTR-3UTR CCA 90 bp TATGTATACAAAGGGCCCTGCATAGGACCTGGAGTGATGAGGCAGTGGGCATGCCTCATTGTAGAAGGTTaGCTTGAGGGGCTTTTAATA +
Preference number: 2 (lower is better)
Translates to: YVYKGPCIGPGVMRQWACLIVEG*LEGLLI
Trigger: TATTAAAAGCCCCTCAAGCCAACCTTCTACAATGAG...GCATGCCCACTGCCTCATCACTCCAGGTCCTATGCAGGGCCCTTTGTATACATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR CAA 90 bp CTTAGTGACTGTGAACGCAGGTTTAAAGGAGCAGTACACATAGAGTaGCTTTTAAGAGGAAGAGGAGGGAGCACAAATAAAGTGGGCCCT +
Preference number: 2 (lower is better)
Translates to: LSDCERRFKGAVHIE*LLRGRGGSTNKVGP
Trigger: AGGGCCCACTTTATTTGTGCTCCCTCCTCTTCCTCTTAAAAGCAACTCTATGTGTACTGCTCCTTTAAACCTGCGTTCACAGTCACTAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR GCA 90 bp ACCATGAGAGGTTTCCAACAAATAATTGAATCCCTTGAGAATCTCGTTATAAGACTTTCCCGTAGGTTTTaGTCTGTGACCCTGAAGCCA +
Preference number: 2 (lower is better)
Translates to: TMRGFQQIIESLENLVIRLSRRF*SVTLKP
Trigger: TGGCTTCAGGGTCACAGAGCAAAACCTACGGGAAAG...TCTTATAACGAGATTCTCAAGGGATTCAATTATTTGTTGGAAACCTCTCATGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR CAA 90 bp ATTTCTGTGAACCTTGTGGTCCACAGGATCTTTACAAACTACTGGTaGTTTTATGTCTATGCCCAAGACACTGTAGATAGCAGAAAAGTC +
Preference number: 2 (lower is better)
Translates to: ISVNLVVHRIFTNYW*FYVYAQDTVDSRKV
Trigger: GACTTTTCTGCTATCTACAGTGTCTTGGGCATAGACATAAAACAACCAGTAGTTTGTAAAGATCCTGTGGACCACAAGGTTCACAGAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
3UTR-3UTR TCA 90 bp ACCATGAGAGGTTTCCAACAAATAATTGAATCCCTTGAGAATCTCGTTATAAGACTCTGCCTTTGGATCTaGCCTAAGGTCTTGATGGAT +
Preference number: 2 (lower is better)
Translates to: TMRGFQQIIESLENLVIRLCLWI*PKVLMD
Trigger: ATCCATCAAGACCTTAGGTCAGATCCAAAGGCAGAG...TCTTATAACGAGATTCTCAAGGGATTCAATTATTTGTTGGAAACCTCTCATGGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR GCA 90 bp ACCATGAGAGGTTTCCAACAAATAATTGAATCCCTTGAGAATCTCGTTATAAGAATAAAGGCCCATAGTTaGACATTGGTGCAGATTTTT +
Preference number: 2 (lower is better)
Translates to: TMRGFQQIIESLENLVIRIKAHS*TLVQIF
Trigger: AAAAATCTGCACCAATGTGCAACTATGGGCCTTTAT...TCTTATAACGAGATTCTCAAGGGATTCAATTATTTGTTGGAAACCTCTCATGGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR TCA 72 bp ACAGGAGCTGTGCGCATCGGGCAGGTACCTGGGCAGTaGCCTTGTCTTACAGTGACAGTGTTCCTGGAGAGG +
Preference number: 3 (lower is better)
Translates to: TGAVRIGQVPGQ*PCLTVTVFLER
Trigger: CCTCTCCAGGAACACTGTCACTGTAAGACAAGGTCACTGCCCAGGTACCTGCCCGATGCGCACAGCTCCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR GCA 72 bp AGAGACGGTCTTTTACACTGGCCAGGTAACCCTTCCTaGACAGGCCTCCCGCCCTTAGTGACTGTGAACGCA +
Preference number: 3 (lower is better)
Translates to: RDGLLHWPGNPS*TGLPPLVTVNA
Trigger: TGCGTTCACAGTCACTAAGGGCGGGAGGCCTGTGCAGGAAGGGTTACCTGGCCAGTGTAAAAGACCGTCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR GCA 72 bp CTCTCATCACCTGCTATGAGGGTGCCAAGCCTGGCCTaGAGACGCACGGTGTTATCATACGGGTCAAGGACT +
Preference number: 3 (lower is better)
Translates to: LSSPAMRVPSLA*RRTVLSYGSRT
Trigger: AGTCCTTGACCCGTATGATAACACCGTGCGTCTGCAGGCCAGGCTTGGCACCCTCATAGCAGGTGATGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR TCA 72 bp CTTCCAAGGAGAGGATGCTCCTGTCCTTCAGACTGTTaGGTGACTCGCGGCCAAAGGATCCGGGTGTTGAGA +
Preference number: 3 (lower is better)
Translates to: LPRRGCSCPSDC*VTRGQRIRVLR
Trigger: TCTCAACACCCGGATCCTTTGGCCGCGAGTCACTCAACAGTCTGAAGGACAGGAGCATCCTCTCCTTGGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR GCA 72 bp ACACTGGGAAGTAGCTCAGTGGGTAAAGGTGCTTGCTaGAGCCCGAGTCAAGTTCCCTGGTCCCTCATAGTG +
Preference number: 3 (lower is better)
Translates to: TLGSSSVGKGAC*SPSQVPWSLIV
Trigger: CACTATGAGGGACCAGGGAACTTGACTCGGGCTGCAGCAAGCACCTTTACCCACTGAGCTACTTCCCAGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR GCA 72 bp CAGACACTGGGAAGTAGCTCAGTGGGTAAAGGTGCTTaGTGCAGCCCGAGTCAAGTTCCCTGGTCCCTCATA +
Preference number: 3 (lower is better)
Translates to: QTLGSSSVGKGA*CSPSQVPWSLI
Trigger: TATGAGGGACCAGGGAACTTGACTCGGGCTGCAGCAAGCACCTTTACCCACTGAGCTACTTCCCAGTGTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR CCA 72 bp AGGACCTGGAGTGATGAGGCAGTGGGCATGCGTTCCTaGTTCTGCTTGGTCCTGGTACTGATAGTTGGCTTC +
Preference number: 3 (lower is better)
Translates to: RTWSDEAVGMRS*FCLVLVLIVGF
Trigger: GAAGCCAACTATCAGTACCAGGACCAAGCAGAACCAGGAACGCATGCCCACTGCCTCATCACTCCAGGTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR TCA 72 bp CATCTCTTCTCTGCCTTTGGATCTGACCTAAGGTCTTaGTGGATCTCCCGGGTCCCTGCAGAGCTCATGGAG +
Preference number: 3 (lower is better)
Translates to: HLFSAFGSDLRS*WISRVPAELME
Trigger: CTCCATGAGCTCTGCAGGGACCCGGGAGATCCATCAAGACCTTAGGTCAGATCCAAAGGCAGAGAAGAGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR CCA 72 bp ATTGTCAAGAGACTCAGCCCTTGGGCATCACCTTTGTaGTCTCCTTTAGTGCCATCTCCCCTCACGTTGGGC +
Preference number: 3 (lower is better)
Translates to: IVKRLSPWASPL*SPLVPSPLTLG
Trigger: GCCCAACGTGAGGGGAGATGGCACTAAAGGAGACCACAAAGGTGATGCCCAAGGGCTGAGTCTCTTGACAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
3UTR CCA 72 bp GTGATGCTATGTATACAAAGGGCCCTGCATAGGACCTaGAGTGATGAGGCAGTGGGCATGCGTTCCTGGTTC +
Preference number: 3 (lower is better)
Translates to: VMLCIQRALHRT*SDEAVGMRSWF
Trigger: GAACCAGGAACGCATGCCCACTGCCTCATCACTCCAGGTCCTATGCAGGGCCCTTTGTATACATAGCATCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR CCA 72 bp GGTAAAGGTGCTTGCTGCAGCCCGAGTCAAGTTCCCTaGTCCCTCATAGTGAAGGAAGAGAACCTTGCTCTG +
Preference number: 3 (lower is better)
Translates to: GKGACCSPSQVP*SLIVKEENLAL
Trigger: CAGAGCAAGGTTCTCTTCCTTCACTATGAGGGACCAGGGAACTTGACTCGGGCTGCAGCAAGCACCTTTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR CAA 90 bp GCTTGCTGCAGCCCGAGTCAAGTTCCCTGGTCCCTCATAGTGAAGGAAGAGAACACCTGGGCAGTGACCTaGTCTTACAGTGACAGTGTT +
Preference number: 3 (lower is better)
Translates to: ACCSPSQVPWSLIVKEENTWAVT*SYSDSV
Trigger: AACACTGTCACTGTAAGACAAGGTCACTGCCCAGGT...GTTCTCTTCCTTCACTATGAGGGACCAGGGAACTTGACTCGGGCTGCAGCAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR GCA 72 bp CTTGCTCTGAGCTGTGCACACATACATCATGCCACCTaGATACCTCCCCCACCCCAATCATACATGCACCAT +
Preference number: 3 (lower is better)
Translates to: LALSCAHIHHAT*IPPPPQSYMHH
Trigger: ATGGTGCATGTATGATTGGGGTGGGGGAGGTATGCAGGTGGCATGATGTATGTGTGCACAGCTCAGAGCAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR GCA 72 bp CCTCATAGTGAAGGAAGAGAACCTTGCTCTGAGCTGTaGACACATACATCATGCCACCTGCATACCTCCCCC +
Preference number: 3 (lower is better)
Translates to: PHSEGREPCSEL*THTSCHLHTSP
Trigger: GGGGGAGGTATGCAGGTGGCATGATGTATGTGTGCACAGCTCAGAGCAAGGTTCTCTTCCTTCACTATGAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR CAA 90 bp TGGCTGTGTCGGATGCCGGGAATCAAGACAGACAGGAAGAAGGTGAGGTTTGAGGGTAACTCAGTGAGATaGTCAAGAGACTCAGCCCTT +
Preference number: 3 (lower is better)
Translates to: WLCRMPGIKTDRKKVRFEGNSVR*SRDSAL
Trigger: AAGGGCTGAGTCTCTTGACAATCTCACTGAGTTACC...CTCAAACCTCACCTTCTTCCTGTCTGTCTTGATTCCCGGCATCCGACACAGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
3UTR TCA 72 bp AGGCTGCCTCTCCTCAGGTTAAATCAGGTAACTCAGTaGGATTGTCAAGAGACTCAGCCCTTGGGCATCACC +
Preference number: 3 (lower is better)
Translates to: RLPLLRLNQVTQ*DCQETQPLGIT
Trigger: GGTGATGCCCAAGGGCTGAGTCTCTTGACAATCTCACTGAGTTACCTGATTTAACCTGAGGAGAGGCAGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
3UTR GCA 72 bp AGAGAACCTTGCTCTGAGCTGTGCACACATACATCATaGCACCTGCATACCTCCCCCACCCCAATCATACAT +
Preference number: 3 (lower is better)
Translates to: REPCSELCTHTS*HLHTSPTPIIH
Trigger: ATGTATGATTGGGGTGGGGGAGGTATGCAGGTGGCATGATGTATGTGTGCACAGCTCAGAGCAAGGTTCTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR CCA 72 bp GTGATAGATAACCCAGAAGTACTCACTGGAATCCAGTaGATGGAGGCCCACACCAGAGAAGTAGTGCTGGTC +
Preference number: 3 (lower is better)
Translates to: VIDNPEVLTGIQ*MEAHTREVVLV
Trigger: GACCAGCACTACTTCTCTGGTGTGGGCCTCCATCCACTGGATTCCAGTGAGTACTTCTGGGTTATCTATCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR CCA 72 bp GCAGACGCACGGTGTTATCATACGGGTCAAGGACTATaGCTGCATTGTGAAGTTCTACAACGATGTGCAGGG +
Preference number: 3 (lower is better)
Translates to: ADARCYHTGQGL*LHCEVLQRCAG
Trigger: CCCTGCACATCGTTGTAGAACTTCACAATGCAGCCATAGTCCTTGACCCGTATGATAACACCGTGCGTCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR CAA 90 bp AGTTCCCTGGTCCCTCATAGTGAAGGAAGAGAACCTTGCTCTGAGCTGTGCACACAAAGGATCCGGGTGTaGAGAGCAGTCAGAAGAAAA +
Preference number: 3 (lower is better)
Translates to: SSLVPHSEGREPCSELCTQRIRV*RAVRRK
Trigger: TTTTCTTCTGACTGCTCTCAACACCCGGATCCTTTG...TGTGCACAGCTCAGAGCAAGGTTCTCTTCCTTCACTATGAGGGACCAGGGAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR TCA 72 bp TACCCCCTCCCTACCCTCACCCCACCTCAATTTCTGTaGACCTTGTGGTCCACAGGATCTTTACAAACTACT +
Preference number: 3 (lower is better)
Translates to: YPLPTLTPPQFL*TLWSTGSLQTT
Trigger: AGTAGTTTGTAAAGATCCTGTGGACCACAAGGTTCACAGAAATTGAGGTGGGGTGAGGGTAGGGAGGGGGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
3UTR TCA 72 bp GCAGCTGCAATTATTAGAGATAAAAGGTCTTTGGAGTaGCCTATGGCCTTCGGGTTCCTGAGGTGGCACACC +
Preference number: 3 (lower is better)
Translates to: AAAIIRDKRSLE*PMAFGFLRWHT
Trigger: GGTGTGCCACCTCAGGAACCCGAAGGCCATAGGTCACTCCAAAGACCTTTTATCTCTAATAATTGCAGCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR GCA 72 bp ACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTaGATTGTGAAGTTCTACAACGATGTGCAGGGGCTA +
Preference number: 3 (lower is better)
Translates to: THGVIIRVKDYG*IVKFYNDVQGL
Trigger: TAGCCCCTGCACATCGTTGTAGAACTTCACAATGCAGCCATAGTCCTTGACCCGTATGATAACACCGTGCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR CCA 72 bp TTTAAAAAGTGTCCCAGACACTGGGAAGTAGCTCAGTaGGTAAAGGTGCTTGCTGCAGCCCGAGTCAAGTTC +
Preference number: 3 (lower is better)
Translates to: FKKCPRHWEVAQ*VKVLAAARVKF
Trigger: GAACTTGACTCGGGCTGCAGCAAGCACCTTTACCCACTGAGCTACTTCCCAGTGTCTGGGACACTTTTTAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR TCA 72 bp CTGAGGTGGCACACCAGTGGCTGTCTTGCTAACAGATaGCTTGTTGATAGCCTTTGTCTTTCCCGTAGGTTT +
Preference number: 3 (lower is better)
Translates to: LRWHTSGCLANR*LVDSLCLSRRF
Trigger: AAACCTACGGGAAAGACAAAGGCTATCAACAAGTCATCTGTTAGCAAGACAGCCACTGGTGTGCCACCTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR CCA 72 bp GCGTTCCTGGTTCTGCTTGGTCCTGGTACTGATAGTTaGCTTCAGTGCCTCCTGTGTGCTAAATATGATGTT +
Preference number: 3 (lower is better)
Translates to: AFLVLLGPGTDS*LQCLLCAKYDV
Trigger: AACATCATATTTAGCACACAGGAGGCACTGAAGCCAACTATCAGTACCAGGACCAAGCAGAACCAGGAACGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR CCA 72 bp CTGCACAAAGTGTACTATACAATGAAGGCTTCCCAGTaGGTTGTCAACAGGCTTCACCAGCTGATGATTCTC +
Preference number: 3 (lower is better)
Translates to: LHKVYYTMKASQ*VVNRLHQLMIL
Trigger: GAGAATCATCAGCTGGTGAAGCCTGTTGACAACCCACTGGGAAGCCTTCATTGTATAGTACACTTTGTGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
3UTR GCA 72 bp GTTCTGCTTGGTCCTGGTACTGATAGTTGGCTTCAGTaGCTCCTGTGTGCTAAATATGATGTTTCATTTAAA +
Preference number: 3 (lower is better)
Translates to: VLLGPGTDSWLQ*LLCAKYDVSFK
Trigger: TTTAAATGAAACATCATATTTAGCACACAGGAGGCACTGAAGCCAACTATCAGTACCAGGACCAAGCAGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR CAA 90 bp ACCATGAGAGGTTTCCAACAAATAATTGAATCCCTTGAGAATCTCGTTATAAGAGCAGTACACATAGAGTaGCTTTTAAGAGGAAGAGGA +
Preference number: 3 (lower is better)
Translates to: TMRGFQQIIESLENLVIRAVHIE*LLRGRG
Trigger: TCCTCTTCCTCTTAAAAGCAACTCTATGTGTACTGC...TCTTATAACGAGATTCTCAAGGGATTCAATTATTTGTTGGAAACCTCTCATGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR-3UTR CAA 90 bp ACCATGAGAGGTTTCCAACAAATAATTGAATCCCTTGAGAATCTCGTTATAAGAGCTGGTCTAGTGAGGTaGTGTTTGTTTCTCTTAAAA +
Preference number: 3 (lower is better)
Translates to: TMRGFQQIIESLENLVIRAGLVR*CLFLLK
Trigger: TTTTAAGAGAAACAAACACAACCTCACTAGACCAGC...TCTTATAACGAGATTCTCAAGGGATTCAATTATTTGTTGGAAACCTCTCATGGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR CCA 90 bp GCACATCCCGGACCCAGAGACGGTCTTTTACACTGGCCAGGTAACCCTTCCTGCGGAAGCTCGATAGGTTaGCGGGGCCCTCTCCACAAG +
Preference number: 4 (lower is better)
Translates to: AHPGPRDGLLHWPGNPSCGSSIG*RGPLHK
Trigger: CTTGTGGAGAGGGCCCCGCCAACCTATCGAGCTTCC...GCAGGAAGGGTTACCTGGCCAGTGTAAAAGACCGTCTCTGGGTCCGGGATGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR GCA 90 bp AGTTCCCTGGTCCCTCATAGTGAAGGAAGAGAACCTTGCTCTGAGCTGTGCACACCTGACTGCCCACCGTaGCCAGGGCCACCAGCCCAT +
Preference number: 4 (lower is better)
Translates to: SSLVPHSEGREPCSELCTPDCPP*PGPPAH
Trigger: ATGGGCTGGTGGCCCTGGGCACGGTGGGCAGTCAGG...TGTGCACAGCTCAGAGCAAGGTTCTCTTCCTTCACTATGAGGGACCAGGGAACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR TCA 90 bp TGGCTGTGTCGGATGCCGGGAATCAAGACAGACAGGAAGAAGGTGAGGTTTGAGACTGAGAACAGCTCCTaGCTGCCCACCGTGCCCAGG +
Preference number: 4 (lower is better)
Translates to: WLCRMPGIKTDRKKVRFETENSS*LPTVPR
Trigger: CCTGGGCACGGTGGGCAGTCAGGAGCTGTTCTCAGT...CTCAAACCTCACCTTCTTCCTGTCTGTCTTGATTCCCGGCATCCGACACAGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR TCA 90 bp GTCTTTGGAGTGACCTATGGCCTTCGGGTTCCTGAGGTGGCACACCAGTGGCTGCCTCCTGACGGTAGCTaGGTGGCGAGCAGTAATGTT +
Preference number: 4 (lower is better)
Translates to: VFGVTYGLRVPEVAHQWLPPDGS*VASSNV
Trigger: AACATTACTGCTCGCCACTCAGCTACCGTCAGGAGG...CAGCCACTGGTGTGCCACCTCAGGAACCCGAAGGCCATAGGTCACTCCAAAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR GCA 90 bp CATCGGGCAGGTACCTGGGCAGTGACCTTGTCTTACAGTGACAGTGTTCCTGGAGTGGCCGTGGCTGTGTaGCTTCCACTGGGAACTTGG +
Preference number: 4 (lower is better)
Translates to: HRAGTWAVTLSYSDSVPGVAVAV*LPLGTW
Trigger: CCAAGTTCCCAGTGGAAGGCACACAGCCACGGCCAC...TCCAGGAACACTGTCACTGTAAGACAAGGTCACTGCCCAGGTACCTGCCCGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR TCA 90 bp AGTTCCCTGGTCCCTCATAGTGAAGGAAGAGAACCTTGCTCTGAGCTGTGCACAACTGAGAACAGCTCCTaGCTGCCCACCGTGCCCAGG +
Preference number: 4 (lower is better)
Translates to: SSLVPHSEGREPCSELCTTENSS*LPTVPR
Trigger: CCTGGGCACGGTGGGCAGTCAGGAGCTGTTCTCAGT...TGTGCACAGCTCAGAGCAAGGTTCTCTTCCTTCACTATGAGGGACCAGGGAACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR TCA 90 bp ATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGGTAGTTCCGGGCGGGTaGGCAGGGACAGTGGAAGGC +
Preference number: 4 (lower is better)
Translates to: IRVKDYGCIVKFYNDVQGVVPGG*AGTVEG
Trigger: GCCTTCCACTGTCCCTGCTCACCCGCCCGGAACTAC...CCCCTGCACATCGTTGTAGAACTTCACAATGCAGCCATAGTCCTTGACCCGTAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR GCA 90 bp GCCTCTCCTCAGGTTAAATCAGGTAACTCAGTGAGATTGTCAAGAGACTCAGCCCCTGACTGCCCACCGTaGCCAGGGCCACCAGCCCAT +
Preference number: 4 (lower is better)
Translates to: ASPQVKSGNSVRLSRDSAPDCPP*PGPPAH
Trigger: ATGGGCTGGTGGCCCTGGGCACGGTGGGCAGTCAGG...GGCTGAGTCTCTTGACAATCTCACTGAGTTACCTGATTTAACCTGAGGAGAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
3UTR CAA 72 bp AGCTGTGCGCATCGGGCAGGTACCTGGGCAGTGACCTaGTCTTACAGTGACAGTGTTCCTGGAGAGGAACTG +
Preference number: 4 (lower is better)
Translates to: SCAHRAGTWAVT*SYSDSVPGEEL
Trigger: CAGTTCCTCTCCAGGAACACTGTCACTGTAAGACAAGGTCACTGCCCAGGTACCTGCCCGATGCGCACAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR CCA 90 bp GTGAAGTTCTACAACGATGTGCAGGGGCTAGTGCCTAAGCATGAGCTTAGCACCGTTCCACTGTGGCCGTaGCTGTGTGCCTTCCACTGG +
Preference number: 4 (lower is better)
Translates to: VKFYNDVQGLVPKHELSTVPLWP*LCAFHW
Trigger: CCAGTGGAAGGCACACAGCCACGGCCACAGTGGAAC...GGTGCTAAGCTCATGCTTAGGCACTAGCCCCTGCACATCGTTGTAGAACTTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR CCA 90 bp AGTTTTCTATGGGAAATGGCTGTGTCGGATGCCGGGAATCAAGACAGACAGGAACCGCGGAGCAGTTCTTaGCCCTCCGGTACTGGCACT +
Preference number: 4 (lower is better)
Translates to: SFLWEMAVSDAGNQDRQEPRSSS*PSGTGT
Trigger: AGTGCCAGTACCGGAGGGCCAAGAACTGCTCCGCGG...TTCCTGTCTGTCTTGATTCCCGGCATCCGACACAGCCATTTCCCATAGAAAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR CCA 90 bp CAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCCTCCGTAGCATGGGCTaGGGGGAAGCCTTTATCCCC +
Preference number: 4 (lower is better)
Translates to: QTHGVIIRVKDYGCIVKFLRSMG*GEAFIP
Trigger: GGGGATAAAGGCTTCCCCCCAGCCCATGCTACGGAG...GAACTTCACAATGCAGCCATAGTCCTTGACCCGTATGATAACACCGTGCGTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR CCA 90 bp AACCCAGAAGTACTCACTGGAATCCAGTGGATGGAGGCCCACACCAGAGAAGTACTGTGTGCCTTCCACTaGGAACTTGGCGACCAGCTC +
Preference number: 4 (lower is better)
Translates to: NPEVLTGIQWMEAHTREVLCAFH*ELGDQL
Trigger: GAGCTGGTCGCCAAGTTCCCAGTGGAAGGCACACAG...TACTTCTCTGGTGTGGGCCTCCATCCACTGGATTCCAGTGAGTACTTCTGGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR CCA 90 bp AACCCAGAAGTACTCACTGGAATCCAGTGGATGGAGGCCCACACCAGAGAAGTAAATCCTGTCAGACCCTaGGCCCACTTGTGTAGGCGG +
Preference number: 4 (lower is better)
Translates to: NPEVLTGIQWMEAHTREVNPVRP*AHLCRR
Trigger: CCGCCTACACAAGTGGGCCCAGGGTCTGACAGGATT...TACTTCTCTGGTGTGGGCCTCCATCCACTGGATTCCAGTGAGTACTTCTGGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR TCA 90 bp GCCTCTCCTCAGGTTAAATCAGGTAACTCAGTGAGATTGTCAAGAGACTCAGCCGTGGAAGGCCACCACTaGGAACAGCTCCTGACTGCC +
Preference number: 4 (lower is better)
Translates to: ASPQVKSGNSVRLSRDSAVEGHH*EQLLTA
Trigger: GGCAGTCAGGAGCTGTTCTCAGTGGTGGCCTTCCAC...GGCTGAGTCTCTTGACAATCTCACTGAGTTACCTGATTTAACCTGAGGAGAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR CCA 90 bp GTGTACTATACAATGAAGGCTTCCCAGTGGGTTGTCAACAGGCTTCACCAGCTGGGTGAGCAGGGACAGTaGAAGGCCACCACTGAGAAC +
Preference number: 4 (lower is better)
Translates to: VYYTMKASQWVVNRLHQLGEQGQ*KATTEN
Trigger: GTTCTCAGTGGTGGCCTTCCACTGTCCCTGCTCACC...CAGCTGGTGAAGCCTGTTGACAACCCACTGGGAAGCCTTCATTGTATAGTACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR CCA 90 bp CAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCGGTGAGCAGGGACAGTaGAAGGCCACCACTGAGAAC +
Preference number: 4 (lower is better)
Translates to: QTHGVIIRVKDYGCIVKFGEQGQ*KATTEN
Trigger: GTTCTCAGTGGTGGCCTTCCACTGTCCCTGCTCACC...GAACTTCACAATGCAGCCATAGTCCTTGACCCGTATGATAACACCGTGCGTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR CCA 90 bp CTGCACAAAGTGTACTATACAATGAAGGCTTCCCAGTGGGTTGTCAACAGGCTTGACAGACCAGGTGACTaGAGCCACAGCTGCACGGCC +
Preference number: 4 (lower is better)
Translates to: LHKVYYTMKASQWVVNRLDRPGD*SHSCTA
Trigger: GGCCGTGCAGCTGTGGCTCCAGTCACCTGGTCTGTC...AAGCCTGTTGACAACCCACTGGGAAGCCTTCATTGTATAGTACACTTTGTGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR CCA 90 bp TTTCTATGGGAAATGGCTGTGTCGGATGCCGGGAATCAAGACAGACAGGAAGAACTCCGTAGCATGGGCTaGGGGGAAGCCTTTATCCCC +
Preference number: 4 (lower is better)
Translates to: FLWEMAVSDAGNQDRQEELRSMG*GEAFIP
Trigger: GGGGATAAAGGCTTCCCCCCAGCCCATGCTACGGAG...TTCTTCCTGTCTGTCTTGATTCCCGGCATCCGACACAGCCATTTCCCATAGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR CCA 90 bp AGTTTTCTATGGGAAATGGCTGTGTCGGATGCCGGGAATCAAGACAGACAGGAAGGAAGCTCGATAGGTTaGCGGGGCCCTCTCCACAAG +
Preference number: 4 (lower is better)
Translates to: SFLWEMAVSDAGNQDRQEGSSIG*RGPLHK
Trigger: CTTGTGGAGAGGGCCCCGCCAACCTATCGAGCTTCC...TTCCTGTCTGTCTTGATTCCCGGCATCCGACACAGCCATTTCCCATAGAAAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR CCA 90 bp AGTTCCCTGGTCCCTCATAGTGAAGGAAGAGAACCTTGCTCTGAGCTGTGCACAGTGCGCTGGAACAACTaGTCCTCGTTGGTACGGTAC +
Preference number: 4 (lower is better)
Translates to: SSLVPHSEGREPCSELCTVRWNN*SSLVRY
Trigger: GTACCGTACCAACGAGGACCAGTTGTTCCAGCGCAC...TGTGCACAGCTCAGAGCAAGGTTCTCTTCCTTCACTATGAGGGACCAGGGAACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR CAA 72 bp GAGATTGTCAAGAGACTCAGCCCTTGGGCATCACCTTaGTGGTCTCCTTTAGTGCCATCTCCCCTCACGTTG +
Preference number: 4 (lower is better)
Translates to: EIVKRLSPWASP*WSPLVPSPLTL
Trigger: CAACGTGAGGGGAGATGGCACTAAAGGAGACCACAAAGGTGATGCCCAAGGGCTGAGTCTCTTGACAATCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR TCA 90 bp ATGGAGGGTTCTGAAGGCCTGCTGCTGCAGGAGGTGACAGACACGTGTGATTTCTCACATCCTTGCTCTTaGAGAAGAGAGACAGGAAGC +
Preference number: 4 (lower is better)
Translates to: MEGSEGLLLQEVTDTCDFSHPCS*RRETGS
Trigger: GCTTCCTGTCTCTCTTCTTCAAGAGCAAGGATGTGA...GAAATCACACGTGTCTGTCACCTCCTGCAGCAGCAGGCCTTCAGAACCCTCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR TCA 90 bp TTAACTGCACAAAGTGTACTATACAATGAAGGCTTCCCAGTGGGTTGTCAACAGGTAGTTCCGGGCGGGTaGGCAGGGACAGTGGAAGGC +
Preference number: 4 (lower is better)
Translates to: LTAQSVLYNEGFPVGCQQVVPGG*AGTVEG
Trigger: GCCTTCCACTGTCCCTGCTCACCCGCCCGGAACTAC...CTGTTGACAACCCACTGGGAAGCCTTCATTGTATAGTACACTTTGTGCAGTTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR TCA 90 bp AACCCAGAAGTACTCACTGGAATCCAGTGGATGGAGGCCCACACCAGAGAAGTAGGTCCACAAACTCACTaGGAGCACAGACATAGGCCT +
Preference number: 4 (lower is better)
Translates to: NPEVLTGIQWMEAHTREVGPQTH*EHRHRP
Trigger: AGGCCTATGTCTGTGCTCTCAGTGAGTTTGTGGACC...TACTTCTCTGGTGTGGGCCTCCATCCACTGGATTCCAGTGAGTACTTCTGGGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR TCA 90 bp AAGGCTTCCCAGTGGGTTGTCAACAGGCTTCACCAGCTGATGATTCTCAACTCTCCTCCTGACGGTAGCTaGGTGGCGAGCAGTAATGTT +
Preference number: 4 (lower is better)
Translates to: KASQWVVNRLHQLMILNSPPDGS*VASSNV
Trigger: AACATTACTGCTCGCCACTCAGCTACCGTCAGGAGG...AGAGTTGAGAATCATCAGCTGGTGAAGCCTGTTGACAACCCACTGGGAAGCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR TCA 90 bp CATCGGGCAGGTACCTGGGCAGTGACCTTGTCTTACAGTGACAGTGTTCCTGGACTTCGTCATCCTTGTTaGGAGCCACAAAGCCAAAGA +
Preference number: 4 (lower is better)
Translates to: HRAGTWAVTLSYSDSVPGLRHPC*EPQSQR
Trigger: TCTTTGGCTTTGTGGCTCTCAACAAGGATGACGAAG...TCCAGGAACACTGTCACTGTAAGACAAGGTCACTGCCCAGGTACCTGCCCGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR GCA 90 bp CTGCACAAAGTGTACTATACAATGAAGGCTTCCCAGTGGGTTGTCAACAGGCTTGTGGCCGTGGCTGTGTaGCTTCCACTGGGAACTTGG +
Preference number: 4 (lower is better)
Translates to: LHKVYYTMKASQWVVNRLVAVAV*LPLGTW
Trigger: CCAAGTTCCCAGTGGAAGGCACACAGCCACGGCCAC...AAGCCTGTTGACAACCCACTGGGAAGCCTTCATTGTATAGTACACTTTGTGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR CCA 90 bp GTTCTCTTTAAGTTTTCTATGGGAAATGGCTGTGTCGGATGCCGGGAATCAAGAGTTCCACTGTGGCCGTaGCTGTGTGCCTTCCACTGG +
Preference number: 4 (lower is better)
Translates to: VLFKFSMGNGCVGCRESRVPLWP*LCAFHW
Trigger: CCAGTGGAAGGCACACAGCCACGGCCACAGTGGAAC...TCTTGATTCCCGGCATCCGACACAGCCATTTCCCATAGAAAACTTAAAGAGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR TCA 90 bp ATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCTACAACGATGTGCAGGGGGCGAGCAGTAATGTTTaGGGCACTTGGTCAGGAACA +
Preference number: 4 (lower is better)
Translates to: IRVKDYGCIVKFYNDVQGASSNV*GTWSGT
Trigger: TGTTCCTGACCAAGTGCCTCAAACATTACTGCTCGC...CCCCTGCACATCGTTGTAGAACTTCACAATGCAGCCATAGTCCTTGACCCGTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR CCA 90 bp CAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCCTGACGGTAGCTGAGTaGCGAGCAGTAATGTTTGAG +
Preference number: 4 (lower is better)
Translates to: QTHGVIIRVKDYGCIVKFLTVAE*RAVMFE
Trigger: CTCAAACATTACTGCTCGCCACTCAGCTACCGTCAG...GAACTTCACAATGCAGCCATAGTCCTTGACCCGTATGATAACACCGTGCGTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR CCA 90 bp CTGCACAAAGTGTACTATACAATGAAGGCTTCCCAGTGGGTTGTCAACAGGCTTGTGCGCTGGAACAACTaGTCCTCGTTGGTACGGTAC +
Preference number: 4 (lower is better)
Translates to: LHKVYYTMKASQWVVNRLVRWNN*SSLVRY
Trigger: GTACCGTACCAACGAGGACCAGTTGTTCCAGCGCAC...AAGCCTGTTGACAACCCACTGGGAAGCCTTCATTGTATAGTACACTTTGTGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR TCA 90 bp CCCACCTCAATTTCTGTGAACCTTGTGGTCCACAGGATCTTTACAAACTACTGGGGTCCACAAACTCACTaGGAGCACAGACATAGGCCT +
Preference number: 4 (lower is better)
Translates to: PTSISVNLVVHRIFTNYWGPQTH*EHRHRP
Trigger: AGGCCTATGTCTGTGCTCTCAGTGAGTTTGTGGACC...CCAGTAGTTTGTAAAGATCCTGTGGACCACAAGGTTCACAGAAATTGAGGTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR TCA 90 bp AGTTTTCTATGGGAAATGGCTGTGTCGGATGCCGGGAATCAAGACAGACAGGAAGCGAGCAGTAATGTTTaGGGCACTTGGTCAGGAACA +
Preference number: 4 (lower is better)
Translates to: SFLWEMAVSDAGNQDRQEASSNV*GTWSGT
Trigger: TGTTCCTGACCAAGTGCCTCAAACATTACTGCTCGC...TTCCTGTCTGTCTTGATTCCCGGCATCCGACACAGCCATTTCCCATAGAAAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR CCA 90 bp AGTTTTCTATGGGAAATGGCTGTGTCGGATGCCGGGAATCAAGACAGACAGGAACTGACGGTAGCTGAGTaGCGAGCAGTAATGTTTGAG +
Preference number: 4 (lower is better)
Translates to: SFLWEMAVSDAGNQDRQELTVAE*RAVMFE
Trigger: CTCAAACATTACTGCTCGCCACTCAGCTACCGTCAG...TTCCTGTCTGTCTTGATTCCCGGCATCCGACACAGCCATTTCCCATAGAAAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR CCA 90 bp TTAACTGCACAAAGTGTACTATACAATGAAGGCTTCCCAGTGGGTTGTCAACAGCTGTGTGCCTTCCACTaGGAACTTGGCGACCAGCTC +
Preference number: 4 (lower is better)
Translates to: LTAQSVLYNEGFPVGCQQLCAFH*ELGDQL
Trigger: GAGCTGGTCGCCAAGTTCCCAGTGGAAGGCACACAG...CTGTTGACAACCCACTGGGAAGCCTTCATTGTATAGTACACTTTGTGCAGTTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR CCA 90 bp TTAACTGCACAAAGTGTACTATACAATGAAGGCTTCCCAGTGGGTTGTCAACAGTTACCTGTCAGACCCTaGGCCCACTTGTGTAGGCGG +
Preference number: 4 (lower is better)
Translates to: LTAQSVLYNEGFPVGCQQLPVRP*AHLCRR
Trigger: CCGCCTACACAAGTGGGCCCAGGGTCTGACAGGTAA...CTGTTGACAACCCACTGGGAAGCCTTCATTGTATAGTACACTTTGTGCAGTTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
3UTR CAA 72 bp GCCTCTCCTCAGGTTAAATCAGGTAACTCAGTGAGATaGTCAAGAGACTCAGCCCTTGGGCATCACCTTTGT +
Preference number: 4 (lower is better)
Translates to: ASPQVKSGNSVR*SRDSALGHHLC
Trigger: ACAAAGGTGATGCCCAAGGGCTGAGTCTCTTGACAATCTCACTGAGTTACCTGATTTAACCTGAGGAGAGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
3UTR CAA 72 bp GGTGGCACACCAGTGGCTGTCTTGCTAACAGATGACTaGTTGATAGCCTTTGTCTTTCCCGTAGGTTTTGCT +
Preference number: 4 (lower is better)
Translates to: GGTPVAVLLTDD*LIAFVFPVGFA
Trigger: AGCAAAACCTACGGGAAAGACAAAGGCTATCAACAAGTCATCTGTTAGCAAGACAGCCACTGGTGTGCCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR TCA 90 bp TTTCTATGGGAAATGGCTGTGTCGGATGCCGGGAATCAAGACAGACAGGAAGAACTTCGTCATCCTTGTTaGGAGCCACAAAGCCAAAGA +
Preference number: 4 (lower is better)
Translates to: FLWEMAVSDAGNQDRQEELRHPC*EPQSQR
Trigger: TCTTTGGCTTTGTGGCTCTCAACAAGGATGACGAAG...TTCTTCCTGTCTGTCTTGATTCCCGGCATCCGACACAGCCATTTCCCATAGAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR GCA 90 bp TTAACTGCACAAAGTGTACTATACAATGAAGGCTTCCCAGTGGGTTGTCAACAGCATTGTCAGGGGCTGTaGCATTACCTGTCAGACCCT +
Preference number: 4 (lower is better)
Translates to: LTAQSVLYNEGFPVGCQQHCQGL*HYLSDP
Trigger: AGGGTCTGACAGGTAATGGCACAGCCCCTGACAATG...CTGTTGACAACCCACTGGGAAGCCTTCATTGTATAGTACACTTTGTGCAGTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR CCA 90 bp ACCATGAGAGGTTTCCAACAAATAATTGAATCCCTTGAGAATCTCGTTATAAGACCGCGGAGCAGTTCTTaGCCCTCCGGTACTGGCACT +
Preference number: 4 (lower is better)
Translates to: TMRGFQQIIESLENLVIRPRSSS*PSGTGT
Trigger: AGTGCCAGTACCGGAGGGCCAAGAACTGCTCCGCGG...TCTTATAACGAGATTCTCAAGGGATTCAATTATTTGTTGGAAACCTCTCATGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR TCA 90 bp GTTCTCTTTAAGTTTTCTATGGGAAATGGCTGTGTCGGATGCCGGGAATCAAGATCACATCCTTGCTCTTaGAGAAGAGAGACAGGAAGC +
Preference number: 4 (lower is better)
Translates to: VLFKFSMGNGCVGCRESRSHPCS*RRETGS
Trigger: GCTTCCTGTCTCTCTTCTTCAAGAGCAAGGATGTGA...TCTTGATTCCCGGCATCCGACACAGCCATTTCCCATAGAAAACTTAAAGAGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
3UTR CAA 72 bp AACCTTGTGGTCCACAGGATCTTTACAAACTACTGGTaGTTTTATGTCTATGCCCAAGACACTGTAGATAGC +
Preference number: 4 (lower is better)
Translates to: NLVVHRIFTNYW*FYVYAQDTVDS
Trigger: GCTATCTACAGTGTCTTGGGCATAGACATAAAACAACCAGTAGTTTGTAAAGATCCTGTGGACCACAAGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
3UTR CAA 72 bp GGCCCACACCAGAGAAGTAGTGCTGGTCTAGTGAGGTaGTGTTTGTTTCTCTTAAAAAGCTTCTTAAAACTT +
Preference number: 4 (lower is better)
Translates to: GPHQRSSAGLVR*CLFLLKSFLKL
Trigger: AAGTTTTAAGAAGCTTTTTAAGAGAAACAAACACAACCTCACTAGACCAGCACTACTTCTCTGGTGTGGGCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
3UTR CAA 72 bp TGTGAACGCAGGTTTAAAGGAGCAGTACACATAGAGTaGCTTTTAAGAGGAAGAGGAGGGAGCACAAATAAA +
Preference number: 4 (lower is better)
Translates to: CERRFKGAVHIE*LLRGRGGSTNK
Trigger: TTTATTTGTGCTCCCTCCTCTTCCTCTTAAAAGCAACTCTATGTGTACTGCTCCTTTAAACCTGCGTTCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS CCA 90 bp GAGCCACAGCTGCACGGCCCAGGATTGAGCTTAGGAGGAGGAAGTTaGGGGCCGCGGAGCAGTTCTTGGCCCTCCGGTACTGGCACTCGG +
Preference number: 5 (lower is better)
Translates to: EPQLHGPGLSLGGGS*GPRSSSWPSGTGTR
Trigger: CCGAGTGCCAGTACCGGAGGGCCAAGAACTGCTCCGCGGCCCCCAACTTCCTCCTCCTAAGCTCAATCCTGGGCCGTGCAGCTGTGGCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS GCA 90 bp GAAACGGCGCACGTTGTTGGCGGCCAGCACCCTCGAATGCACCTCTaGTGTGCGCTGGAACAACTGGTCCTCGTTGGTACGGTACTGAGC +
Preference number: 5 (lower is better)
Translates to: ETAHVVGGQHPRMHL*CALEQLVLVGTVLS
Trigger: GCTCAGTACCGTACCAACGAGGACCAGTTGTTCCAGCGCACAGCAGAGGTGCATTCGAGGGTGCTGGCCGCCAACAACGTGCGCCGTTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS GCA 90 bp AAGCCAAAGAAACGGCGCACGTTGTTGGCGGCCAGCACCCTCGAATaGACCTCTGCTGTGCGCTGGAACAACTGGTCCTCGTTGGTACGG +
Preference number: 5 (lower is better)
Translates to: KPKKRRTLLAASTLE*TSAVRWNNWSSLVR
Trigger: CCGTACCAACGAGGACCAGTTGTTCCAGCGCACAGCAGAGGTGCATTCGAGGGTGCTGGCCGCCAACAACGTGCGCCGTTTCTTTGGCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CCA 90 bp AGGAGGAAGTTGGGGGCCGCGGAGCAGTTCTTGGCCCTCCGGTACTaGCACTCGGCGACTAGGTTCCAAGTGTGGTTGTTGAGAATGACT +
Preference number: 5 (lower is better)
Translates to: RRKLGAAEQFLALRY*HSATRFQVWLLRMT
Trigger: AGTCATTCTCAACAACCACACTTGGAACCTAGTCGCCGAGTGCCAGTACCGGAGGGCCAAGAACTGCTCCGCGGCCCCCAACTTCCTCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CCA 90 bp CCCAGTGATAGCGTTCCACTGTGGCCGTGGCTGTGTGCCTTCCACTaGGAACTTGGCGACCAGCTCTTCGTCATCCTTGTTGAGAGCCAC +
Preference number: 5 (lower is better)
Translates to: PSDSVPLWPWLCAFH*ELGDQLFVILVESH
Trigger: GTGGCTCTCAACAAGGATGACGAAGAGCTGGTCGCCAAGTTCCCAGTGGAAGGCACACAGCCACGGCCACAGTGGAACGCTATCACTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CCA 90 bp CTCTCGGTACAGATAGACCCCAGTGATAGCGTTCCACTGTGGCCGTaGCTGTGTGCCTTCCACTGGGAACTTGGCGACCAGCTCTTCGTC +
Preference number: 5 (lower is better)
Translates to: LSVQIDPSDSVPLWP*LCAFHWELGDQLFV
Trigger: GACGAAGAGCTGGTCGCCAAGTTCCCAGTGGAAGGCACACAGCCACGGCCACAGTGGAACGCTATCACTGGGGTCTATCTGTACCGAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CCA 90 bp CTGGTTCTCTCGGTACAGATAGACCCCAGTGATAGCGTTCCACTGTaGCCGTGGCTGTGTGCCTTCCACTGGGAACTTGGCGACCAGCTC +
Preference number: 5 (lower is better)
Translates to: LVLSVQIDPSDSVPL*PWLCAFHWELGDQL
Trigger: GAGCTGGTCGCCAAGTTCCCAGTGGAAGGCACACAGCCACGGCCACAGTGGAACGCTATCACTGGGGTCTATCTGTACCGAGAGAACCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CCA 90 bp TTCTTGGCCCTCCGGTACTGGCACTCGGCGACTAGGTTCCAAGTGTaGTTGTTGAGAATGACTCCGATAAGGAAGAGGGCCAGCGCAGGC +
Preference number: 5 (lower is better)
Translates to: FLALRYWHSATRFQV*LLRMTPIRKRASAG
Trigger: GCCTGCGCTGGCCCTCTTCCTTATCGGAGTCATTCTCAACAACCACACTTGGAACCTAGTCGCCGAGTGCCAGTACCGGAGGGCCAAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS TCA 90 bp TGCCTTCCACTGGGAACTTGGCGACCAGCTCTTCGTCATCCTTGTTaGGAGCCACAAAGCCAAAGAAACGGCGCACGTTGTTGGCGGCCA +
Preference number: 5 (lower is better)
Translates to: CLPLGTWRPALRHPC*EPQSQRNGARCWRP
Trigger: TGGCCGCCAACAACGTGCGCCGTTTCTTTGGCTTTGTGGCTCTCAACAAGGATGACGAAGAGCTGGTCGCCAAGTTCCCAGTGGAAGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS-3UTR CAA 90 bp AACCCAGAAGTACTCACTGGAATCCAGTGGATGGAGGCCCACACCAGAGAAGTAAAACGGCGCACGTTGTaGGCGGCCAGCACCCTCGAA +
Preference number: 5 (lower is better)
Translates to: NPEVLTGIQWMEAHTREVKRRTL*AASTLE
Trigger: TTCGAGGGTGCTGGCCGCCAACAACGTGCGCCGTTT...TACTTCTCTGGTGTGGGCCTCCATCCACTGGATTCCAGTGAGTACTTCTGGGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS CCA 90 bp GTTGGTACGGTACTGAGCCCAGTAGGCCTCCTGACGGTAGCTGAGTaGCGAGCAGTAATGTTTGAGGCACTTGGTCAGGAACACCAGGAT +
Preference number: 5 (lower is better)
Translates to: VGTVLSPVGLLTVAE*RAVMFEALGQEHQD
Trigger: ATCCTGGTGTTCCTGACCAAGTGCCTCAAACATTACTGCTCGCCACTCAGCTACCGTCAGGAGGCCTACTGGGCTCAGTACCGTACCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS-3UTR CAA 90 bp CAGACGCACGGTGTTATCATACGGGTCAAGGACTATGGCTGCATTGTGAAGTTCCTTAGGAGGAGGAAGTaGGGGGCCGCGGAGCAGTTC +
Preference number: 5 (lower is better)
Translates to: QTHGVIIRVKDYGCIVKFLRRRK*GAAEQF
Trigger: GAACTGCTCCGCGGCCCCCAACTTCCTCCTCCTAAG...GAACTTCACAATGCAGCCATAGTCCTTGACCCGTATGATAACACCGTGCGTCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR CAA 90 bp GTGTACTATACAATGAAGGCTTCCCAGTGGGTTGTCAACAGGCTTCACCAGCTGAAACGGCGCACGTTGTaGGCGGCCAGCACCCTCGAA +
Preference number: 5 (lower is better)
Translates to: VYYTMKASQWVVNRLHQLKRRTL*AASTLE
Trigger: TTCGAGGGTGCTGGCCGCCAACAACGTGCGCCGTTT...CAGCTGGTGAAGCCTGTTGACAACCCACTGGGAAGCCTTCATTGTATAGTACAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR CAA 90 bp TGGCTGTGTCGGATGCCGGGAATCAAGACAGACAGGAAGAAGGTGAGGTTTGAGAGGGCCATCTCCACATaGTCAGGGGCTGTGCCATTA +
Preference number: 5 (lower is better)
Translates to: WLCRMPGIKTDRKKVRFERAIST*SGAVPL
Trigger: TAATGGCACAGCCCCTGACAATGTGGAGATGGCCCT...CTCAAACCTCACCTTCTTCCTGTCTGTCTTGATTCCCGGCATCCGACACAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR CAA 90 bp GTTCTCTTTAAGTTTTCTATGGGAAATGGCTGTGTCGGATGCCGGGAATCAAGACTTAGGAGGAGGAAGTaGGGGGCCGCGGAGCAGTTC +
Preference number: 5 (lower is better)
Translates to: VLFKFSMGNGCVGCRESRLRRRK*GAAEQF
Trigger: GAACTGCTCCGCGGCCCCCAACTTCCTCCTCCTAAG...TCTTGATTCCCGGCATCCGACACAGCCATTTCCCATAGAAAACTTAAAGAGAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR CAA 90 bp CAAGTTCCCTGGTCCCTCATAGTGAAGGAAGAGAACCTTGCTCTGAGCTGTGCAAGGGCCACCAGCCCATaGAAAATCATCACATCCTTG +
Preference number: 5 (lower is better)
Translates to: QVPWSLIVKEENLALSCARATSP*KIITSL
Trigger: CAAGGATGTGATGATTTTCAATGGGCTGGTGGCCCT...TGCACAGCTCAGAGCAAGGTTCTCTTCCTTCACTATGAGGGACCAGGGAACTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR CAA 90 bp GTGTACTATACAATGAAGGCTTCCCAGTGGGTTGTCAACAGGCTTCACCAGCTGAGCTCTTCGTCATCCTaGTTGAGAGCCACAAAGCCA +
Preference number: 5 (lower is better)
Translates to: VYYTMKASQWVVNRLHQLSSSSS*LRATKP
Trigger: TGGCTTTGTGGCTCTCAACAAGGATGACGAAGAGCT...CAGCTGGTGAAGCCTGTTGACAACCCACTGGGAAGCCTTCATTGTATAGTACAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR CAA 90 bp TTTCTATGGGAAATGGCTGTGTCGGATGCCGGGAATCAAGACAGACAGGAAGAAAGGGCCACCAGCCCATaGAAAATCATCACATCCTTG +
Preference number: 5 (lower is better)
Translates to: FLWEMAVSDAGNQDRQEERATSP*KIITSL
Trigger: CAAGGATGTGATGATTTTCAATGGGCTGGTGGCCCT...TTCTTCCTGTCTGTCTTGATTCCCGGCATCCGACACAGCCATTTCCCATAGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR CAA 90 bp AGTTTTCTATGGGAAATGGCTGTGTCGGATGCCGGGAATCAAGACAGACAGGAATCTTCGTCATCCTTGTaGAGAGCCACAAAGCCAAAG +
Preference number: 5 (lower is better)
Translates to: SFLWEMAVSDAGNQDRQESSSSL*RATKPK
Trigger: CTTTGGCTTTGTGGCTCTCAACAAGGATGACGAAGA...TTCCTGTCTGTCTTGATTCCCGGCATCCGACACAGCCATTTCCCATAGAAAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR CAA 90 bp AACCCAGAAGTACTCACTGGAATCCAGTGGATGGAGGCCCACACCAGAGAAGTAAAAATCATCACATCCTaGCTCTTGAAGAAGAGAGAC +
Preference number: 5 (lower is better)
Translates to: NPEVLTGIQWMEAHTREVKIITS*LLKKRD
Trigger: GTCTCTCTTCTTCAAGAGCAAGGATGTGATGATTTT...TACTTCTCTGGTGTGGGCCTCCATCCACTGGATTCCAGTGAGTACTTCTGGGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR CAA 90 bp AAAGTACTTTCTGATAGCTGTGAGCAGAGTGTGCTAGTGGCCACGGGAGAAATGAAAATCATCACATCCTaGCTCTTGAAGAAGAGAGAC +
Preference number: 5 (lower is better)
Translates to: KVLSDSCEQSVLVATGEMKIITS*LLKKRD
Trigger: GTCTCTCTTCTTCAAGAGCAAGGATGTGATGATTTT...CATTTCTCCCGTGGCCACTAGCACACTCTGCTCACAGCTATCAGAAAGTACTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR CAA 90 bp GTTCTCTTTAAGTTTTCTATGGGAAATGGCTGTGTCGGATGCCGGGAATCAAGATTCCAAGTGTGGTTGTaGAGAATGACTCCGATAAGG +
Preference number: 5 (lower is better)
Translates to: VLFKFSMGNGCVGCRESRFQVWL*RMTPIR
Trigger: CCTTATCGGAGTCATTCTCAACAACCACACTTGGAA...TCTTGATTCCCGGCATCCGACACAGCCATTTCCCATAGAAAACTTAAAGAGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035822.2
CDS-3UTR CAA 90 bp ACCATGAGAGGTTTCCAACAAATAATTGAATCCCTTGAGAATCTCGTTATAAGAAGCTCTTCGTCATCCTaGTTGAGAGCCACAAAGCCA +
Preference number: 5 (lower is better)
Translates to: TMRGFQQIIESLENLVIRSSSSS*LRATKP
Trigger: TGGCTTTGTGGCTCTCAACAAGGATGACGAAGAGCT...TCTTATAACGAGATTCTCAAGGGATTCAATTATTTGTTGGAAACCTCTCATGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS-3UTR CAA 90 bp ACCATGAGAGGTTTCCAACAAATAATTGAATCCCTTGAGAATCTCGTTATAAGATCTTCGTCATCCTTGTaGAGAGCCACAAAGCCAAAG +
Preference number: 5 (lower is better)
Translates to: TMRGFQQIIESLENLVIRSSSSL*RATKPK
Trigger: CTTTGGCTTTGTGGCTCTCAACAAGGATGACGAAGA...TCTTATAACGAGATTCTCAAGGGATTCAATTATTTGTTGGAAACCTCTCATGGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140512.8
CDS CAA 90 bp GGAGCCACAGCTGCACGGCCCAGGATTGAGCTTAGGAGGAGGAAGTaGGGGGCCGCGGAGCAGTTCTTGGCCCTCCGGTACTGGCACTCG +
Preference number: 6 (lower is better)
Translates to: GATAARPRIELRRRK*GAAEQFLALRYWHS
Trigger: CGAGTGCCAGTACCGGAGGGCCAAGAACTGCTCCGCGGCCCCCAACTTCCTCCTCCTAAGCTCAATCCTGGGCCGTGCAGCTGTGGCTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CAA 72 bp GCTGCACGGCCCAGGATTGAGCTTAGGAGGAGGAAGTaGGGGGCCGCGGAGCAGTTCTTGGCCCTCCGGTAC +
Preference number: 6 (lower is better)
Translates to: AARPRIELRRRK*GAAEQFLALRY
Trigger: GTACCGGAGGGCCAAGAACTGCTCCGCGGCCCCCAACTTCCTCCTCCTAAGCTCAATCCTGGGCCGTGCAGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CAA 72 bp AGCCTGCGGCTGACCTCCTCTCGGAAGCTCGATAGGTaGGCGGGGCCCTCTCCACAAGGGAACCTGGCTAGG +
Preference number: 6 (lower is better)
Translates to: SLRLTSSRKLDR*AGPSPQGNLAR
Trigger: CCTAGCCAGGTTCCCTTGTGGAGAGGGCCCCGCCAACCTATCGAGCTTCCGAGAGGAGGTCAGCCGCAGGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS GCA 72 bp AAACGGCGCACGTTGTTGGCGGCCAGCACCCTCGAATaGACCTCTGCTGTGCGCTGGAACAACTGGTCCTCG +
Preference number: 6 (lower is better)
Translates to: KRRTLLAASTLE*TSAVRWNNWSS
Trigger: CGAGGACCAGTTGTTCCAGCGCACAGCAGAGGTGCATTCGAGGGTGCTGGCCGCCAACAACGTGCGCCGTTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CCA 72 bp TTGGGGGCCGCGGAGCAGTTCTTGGCCCTCCGGTACTaGCACTCGGCGACTAGGTTCCAAGTGTGGTTGTTG +
Preference number: 6 (lower is better)
Translates to: LGAAEQFLALRY*HSATRFQVWLL
Trigger: CAACAACCACACTTGGAACCTAGTCGCCGAGTGCCAGTACCGGAGGGCCAAGAACTGCTCCGCGGCCCCCAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CAA 90 bp TCATACTTGAGCCTGCGGCTGACCTCCTCTCGGAAGCTCGATAGGTaGGCGGGGCCCTCTCCACAAGGGAACCTGGCTAGGACCTCCGTA +
Preference number: 6 (lower is better)
Translates to: SYLSLRLTSSRKLDR*AGPSPQGNLARTSV
Trigger: TACGGAGGTCCTAGCCAGGTTCCCTTGTGGAGAGGGCCCCGCCAACCTATCGAGCTTCCGAGAGGAGGTCAGCCGCAGGCTCAAGTATGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS GCA 72 bp CACGTTGTTGGCGGCCAGCACCCTCGAATGCACCTCTaGTGTGCGCTGGAACAACTGGTCCTCGTTGGTACG +
Preference number: 6 (lower is better)
Translates to: HVVGGQHPRMHL*CALEQLVLVGT
Trigger: CGTACCAACGAGGACCAGTTGTTCCAGCGCACAGCAGAGGTGCATTCGAGGGTGCTGGCCGCCAACAACGTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CCA 72 bp GCACCTCTGCTGTGCGCTGGAACAACTGGTCCTCGTTaGTACGGTACTGAGCCCAGTAGGCCTCCTGACGGT +
Preference number: 6 (lower is better)
Translates to: APLLCAGTTGPR*YGTEPSRPPDG
Trigger: ACCGTCAGGAGGCCTACTGGGCTCAGTACCGTACCAACGAGGACCAGTTGTTCCAGCGCACAGCAGAGGTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CAA 90 bp GCCCTCCGGTACTGGCACTCGGCGACTAGGTTCCAAGTGTGGTTGTaGAGAATGACTCCGATAAGGAAGAGGGCCAGCGCAGGCACGCCA +
Preference number: 6 (lower is better)
Translates to: ALRYWHSATRFQVWL*RMTPIRKRASAGTP
Trigger: TGGCGTGCCTGCGCTGGCCCTCTTCCTTATCGGAGTCATTCTCAACAACCACACTTGGAACCTAGTCGCCGAGTGCCAGTACCGGAGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CAA 72 bp CACTGTGGCCGTGGCTGTGTGCCTTCCACTGGGAACTaGGCGACCAGCTCTTCGTCATCCTTGTTGAGAGCC +
Preference number: 6 (lower is better)
Translates to: HCGRGCVPSTGN*ATSSSSSLLRA
Trigger: GGCTCTCAACAAGGATGACGAAGAGCTGGTCGCCAAGTTCCCAGTGGAAGGCACACAGCCACGGCCACAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CAA 90 bp TTGGCCCTCCGGTACTGGCACTCGGCGACTAGGTTCCAAGTGTGGTaGTTGAGAATGACTCCGATAAGGAAGAGGGCCAGCGCAGGCACG +
Preference number: 6 (lower is better)
Translates to: LALRYWHSATRFQVW*LRMTPIRKRASAGT
Trigger: CGTGCCTGCGCTGGCCCTCTTCCTTATCGGAGTCATTCTCAACAACCACACTTGGAACCTAGTCGCCGAGTGCCAGTACCGGAGGGCCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CAA 90 bp TCGTCATCCTTGTTGAGAGCCACAAAGCCAAAGAAACGGCGCACGTaGTTGGCGGCCAGCACCCTCGAATGCACCTCTGCTGTGCGCTGG +
Preference number: 6 (lower is better)
Translates to: SSSLLRATKPKKRRT*LAASTLECTSAVRW
Trigger: CCAGCGCACAGCAGAGGTGCATTCGAGGGTGCTGGCCGCCAACAACGTGCGCCGTTTCTTTGGCTTTGTGGCTCTCAACAAGGATGACGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CAA 90 bp TCATCCTTGTTGAGAGCCACAAAGCCAAAGAAACGGCGCACGTTGTaGGCGGCCAGCACCCTCGAATGCACCTCTGCTGTGCGCTGGAAC +
Preference number: 6 (lower is better)
Translates to: SSLLRATKPKKRRTL*AASTLECTSAVRWN
Trigger: GTTCCAGCGCACAGCAGAGGTGCATTCGAGGGTGCTGGCCGCCAACAACGTGCGCCGTTTCTTTGGCTTTGTGGCTCTCAACAAGGATGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CAA 90 bp GTGCCTTCCACTGGGAACTTGGCGACCAGCTCTTCGTCATCCTTGTaGAGAGCCACAAAGCCAAAGAAACGGCGCACGTTGTTGGCGGCC +
Preference number: 6 (lower is better)
Translates to: VPSTGNLATSSSSSL*RATKPKKRRTLLAA
Trigger: GGCCGCCAACAACGTGCGCCGTTTCTTTGGCTTTGTGGCTCTCAACAAGGATGACGAAGAGCTGGTCGCCAAGTTCCCAGTGGAAGGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CCA 72 bp AGCGTTCCACTGTGGCCGTGGCTGTGTGCCTTCCACTaGGAACTTGGCGACCAGCTCTTCGTCATCCTTGTT +
Preference number: 6 (lower is better)
Translates to: SVPLWPWLCAFH*ELGDQLFVILV
Trigger: AACAAGGATGACGAAGAGCTGGTCGCCAAGTTCCCAGTGGAAGGCACACAGCCACGGCCACAGTGGAACGCT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CCA 72 bp TCGGTACAGATAGACCCCAGTGATAGCGTTCCACTGTaGCCGTGGCTGTGTGCCTTCCACTGGGAACTTGGC +
Preference number: 6 (lower is better)
Translates to: SVQIDPSDSVPL*PWLCAFHWELG
Trigger: GCCAAGTTCCCAGTGGAAGGCACACAGCCACGGCCACAGTGGAACGCTATCACTGGGGTCTATCTGTACCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CAA 72 bp TTGAGAGCCACAAAGCCAAAGAAACGGCGCACGTTGTaGGCGGCCAGCACCCTCGAATGCACCTCTGCTGTG +
Preference number: 6 (lower is better)
Translates to: LRATKPKKRRTL*AASTLECTSAV
Trigger: CACAGCAGAGGTGCATTCGAGGGTGCTGGCCGCCAACAACGTGCGCCGTTTCTTTGGCTTTGTGGCTCTCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CAA 90 bp ATAGCGTTCCACTGTGGCCGTGGCTGTGTGCCTTCCACTGGGAACTaGGCGACCAGCTCTTCGTCATCCTTGTTGAGAGCCACAAAGCCA +
Preference number: 6 (lower is better)
Translates to: IAFHCGRGCVPSTGN*ATSSSSSLLRATKP
Trigger: TGGCTTTGTGGCTCTCAACAAGGATGACGAAGAGCTGGTCGCCAAGTTCCCAGTGGAAGGCACACAGCCACGGCCACAGTGGAACGCTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CAA 90 bp TGTGTGCCTTCCACTGGGAACTTGGCGACCAGCTCTTCGTCATCCTaGTTGAGAGCCACAAAGCCAAAGAAACGGCGCACGTTGTTGGCG +
Preference number: 6 (lower is better)
Translates to: CVPSTGNLATSSSSS*LRATKPKKRRTLLA
Trigger: CGCCAACAACGTGCGCCGTTTCTTTGGCTTTGTGGCTCTCAACAAGGATGACGAAGAGCTGGTCGCCAAGTTCCCAGTGGAAGGCACACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CCA 72 bp CTCCGGTACTGGCACTCGGCGACTAGGTTCCAAGTGTaGTTGTTGAGAATGACTCCGATAAGGAAGAGGGCC +
Preference number: 6 (lower is better)
Translates to: LRYWHSATRFQV*LLRMTPIRKRA
Trigger: GGCCCTCTTCCTTATCGGAGTCATTCTCAACAACCACACTTGGAACCTAGTCGCCGAGTGCCAGTACCGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CCA 72 bp GTACTGAGCCCAGTAGGCCTCCTGACGGTAGCTGAGTaGCGAGCAGTAATGTTTGAGGCACTTGGTCAGGAA +
Preference number: 6 (lower is better)
Translates to: VLSPVGLLTVAE*RAVMFEALGQE
Trigger: TTCCTGACCAAGTGCCTCAAACATTACTGCTCGCCACTCAGCTACCGTCAGGAGGCCTACTGGGCTCAGTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CAA 72 bp CGGTACTGGCACTCGGCGACTAGGTTCCAAGTGTGGTaGTTGAGAATGACTCCGATAAGGAAGAGGGCCAGC +
Preference number: 6 (lower is better)
Translates to: RYWHSATRFQVW*LRMTPIRKRAS
Trigger: GCTGGCCCTCTTCCTTATCGGAGTCATTCTCAACAACCACACTTGGAACCTAGTCGCCGAGTGCCAGTACCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CAA 72 bp TCCACTGGGAACTTGGCGACCAGCTCTTCGTCATCCTaGTTGAGAGCCACAAAGCCAAAGAAACGGCGCACG +
Preference number: 6 (lower is better)
Translates to: STGNLATSSSSS*LRATKPKKRRT
Trigger: CGTGCGCCGTTTCTTTGGCTTTGTGGCTCTCAACAAGGATGACGAAGAGCTGGTCGCCAAGTTCCCAGTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS TCA 72 bp CTGGGAACTTGGCGACCAGCTCTTCGTCATCCTTGTTaGGAGCCACAAAGCCAAAGAAACGGCGCACGTTGT +
Preference number: 6 (lower is better)
Translates to: LGTWRPALRHPC*EPQSQRNGARC
Trigger: ACAACGTGCGCCGTTTCTTTGGCTTTGTGGCTCTCAACAAGGATGACGAAGAGCTGGTCGCCAAGTTCCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CAA 72 bp TACTGGCACTCGGCGACTAGGTTCCAAGTGTGGTTGTaGAGAATGACTCCGATAAGGAAGAGGGCCAGCGCA +
Preference number: 6 (lower is better)
Translates to: YWHSATRFQVWL*RMTPIRKRASA
Trigger: TGCGCTGGCCCTCTTCCTTATCGGAGTCATTCTCAACAACCACACTTGGAACCTAGTCGCCGAGTGCCAGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8
CDS CAA 72 bp ACTGGGAACTTGGCGACCAGCTCTTCGTCATCCTTGTaGAGAGCCACAAAGCCAAAGAAACGGCGCACGTTG +
Preference number: 6 (lower is better)
Translates to: TGNLATSSSSSL*RATKPKKRRTL
Trigger: CAACGTGCGCCGTTTCTTTGGCTTTGTGGCTCTCAACAAGGATGACGAAGAGCTGGTCGCCAAGTTCCCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035822.2
ENSMUST00000140512.8