Pregenerated sensors for CALCOCO2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000006056Ensembl transcript IDs: ENSMUST00000068686.13, ENSMUST00000097162.6
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGCAATCCTTCTGTCCCAGCTTCCCTAGTGCTGAGATTAAAGGTGTaGACGACCACTTGGCTGAGTCCTTTTGAGACAGGGGTTTCTTTG | + |
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Preference number: 1 (lower is better) Translates to: GNPSVPASLVLRLKV*TTTWLSPFETGVSL Trigger: CAAAGAAACCCCTGTCTCAAAAGGACTCAGCCAAGTGGTCGTGCACACCTTTAATCTCAGCACTAGGGAAGCTGGGACAGAAGGATTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| 3UTR CCA 90 bp | CAGCACAAAATGTATGAATGTAAAGTTAATTTATGGTTGGAGGGATaGCTCAAAAGTGAAGAGCACTTGATGCTCTTGCACAGGACTCAG | + |
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Preference number: 1 (lower is better) Translates to: QHKMYECKVNLWLEG*LKSEEHLMLLHRTQ Trigger: CTGAGTCCTGTGCAAGAGCATCAAGTGCTCTTCACTTTTGAGCCATCCCTCCAACCATAAATTAACTTTACATTCATACATTTTGTGCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| 3UTR CAA 90 bp | TTATGGTTGGAGGGATGGCTCAAAAGTGAAGAGCACTTGATGCTCTaGCACAGGACTCAGGTTTGGTACCTAGCTCATAACTCTGTAACT | + |
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Preference number: 2 (lower is better) Translates to: LWLEGWLKSEEHLML*HRTQVWYLAHNSVT Trigger: AGTTACAGAGTTATGAGCTAGGTACCAAACCTGAGTCCTGTGCAAGAGCATCAAGTGCTCTTCACTTTTGAGCCATCCCTCCAACCATAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| 3UTR-3UTR CCA 90 bp | GGATGGCTCAAAAGTGAAGAGCACTTGATGCTCTTGCACAGGACTCAGGTTTGGTTCTTTGTTTTGTTTTaGGACAGGCCATCATGTAGC | + |
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Preference number: 2 (lower is better) Translates to: GWLKSEEHLMLLHRTQVWFFVLF*DRPSCS Trigger: GCTACATGATGGCCTGTCCCAAAACAAAACAAAGAA...CCAAACCTGAGTCCTGTGCAAGAGCATCAAGTGCTCTTCACTTTTGAGCCATCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| 3UTR CAA 90 bp | AAATCAACACAGCACAAAATGTATGAATGTAAAGTTAATTTATGGTaGGAGGGATGGCTCAAAAGTGAAGAGCACTTGATGCTCTTGCAC | + |
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Preference number: 2 (lower is better) Translates to: KSTQHKMYECKVNLW*EGWLKSEEHLMLLH Trigger: GTGCAAGAGCATCAAGTGCTCTTCACTTTTGAGCCATCCCTCCAACCATAAATTAACTTTACATTCATACATTTTGTGCTGTGTTGATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| 3UTR CCA 72 bp | GTTTTGTTTTGGGACAGGCCATCATGTAGCCTACGCTaGCCTCAGATTCACTGTGTAGCTAAGGATGGCCTT | + |
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Preference number: 3 (lower is better) Translates to: VLFWDRPSCSLR*PQIHCVAKDGL Trigger: AAGGCCATCCTTAGCTACACAGTGAATCTGAGGCCAGCGTAGGCTACATGATGGCCTGTCCCAAAACAAAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| 3UTR CCA 72 bp | GAAGAGCACTTGATGCTCTTGCACAGGACTCAGGTTTaGTACCTAGCTCATAACTCTGTAACTCCAGTTTCA | + |
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Preference number: 3 (lower is better) Translates to: EEHLMLLHRTQV*YLAHNSVTPVS Trigger: TGAAACTGGAGTTACAGAGTTATGAGCTAGGTACCAAACCTGAGTCCTGTGCAAGAGCATCAAGTGCTCTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| CDS-3UTR GCA 90 bp | GGTCCTCAGTCTGGGATGTGCAATCATACCAAACCAGAACAGGCAGTGCTAACAGCTTCCAGTGCCACCTaGTTCCTCTGTAGCTGCTCA | + |
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Preference number: 4 (lower is better) Translates to: GPQSGMCNHTKPEQAVLTASSAT*FLCSCS Trigger: TGAGCAGCTACAGAGGAAGCAGGTGGCACTGGAAGC...TGTTAGCACTGCCTGTTCTGGTTTGGTATGATTGCACATCCCAGACTGAGGACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| CDS-3UTR GCA 90 bp | GGCAATCCTTCTGTCCCAGCTTCCCTAGTGCTGAGATTAAAGGTGTGCACGACCATTGACCCTCTGTGTTaGTTCCAGTGCCACCTGCTT | + |
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Preference number: 4 (lower is better) Translates to: GNPSVPASLVLRLKVCTTIDPLC*FQCHLL Trigger: AAGCAGGTGGCACTGGAAGCAACACAGAGGGTCAAT...GGTCGTGCACACCTTTAATCTCAGCACTAGGGAAGCTGGGACAGAAGGATTGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| CDS-3UTR CCA 90 bp | GGCAATCCTTCTGTCCCAGCTTCCCTAGTGCTGAGATTAAAGGTGTGCACGACCGGGTCTGGACAAAACTaGAAAGGGACACTTGTTCCC | + |
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Preference number: 4 (lower is better) Translates to: GNPSVPASLVLRLKVCTTGSGQN*KGTLVP Trigger: GGGAACAAGTGTCCCTTTCCAGTTTTGTCCAGACCC...GGTCGTGCACACCTTTAATCTCAGCACTAGGGAAGCTGGGACAGAAGGATTGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| CDS-3UTR GCA 90 bp | TTCTTTGTTTTGTTTTGGGACAGGCCATCATGTAGCCTACGCTGGCCTCAGATTTGCTTCCTCTGTAGCTaGTCATGGAGGTCAGCGTAC | + |
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Preference number: 4 (lower is better) Translates to: FFVLFWDRPSCSLRWPQICFLCS*SWRSAY Trigger: GTACGCTGACCTCCATGAGCAGCTACAGAGGAAGCA...AATCTGAGGCCAGCGTAGGCTACATGATGGCCTGTCCCAAAACAAAACAAAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| 3UTR CAA 72 bp | GAGGGATGGCTCAAAAGTGAAGAGCACTTGATGCTCTaGCACAGGACTCAGGTTTGGTACCTAGCTCATAAC | + |
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Preference number: 4 (lower is better) Translates to: EGWLKSEEHLML*HRTQVWYLAHN Trigger: GTTATGAGCTAGGTACCAAACCTGAGTCCTGTGCAAGAGCATCAAGTGCTCTTCACTTTTGAGCCATCCCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| CDS-3UTR TCA 90 bp | GGATGGCTCAAAAGTGAAGAGCACTTGATGCTCTTGCACAGGACTCAGGTTTGGTTGTTAAACAGGACCTaGGAGAAGTTGCCATGTTCC | + |
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Preference number: 4 (lower is better) Translates to: GWLKSEEHLMLLHRTQVWLLNRT*EKLPCS Trigger: GGAACATGGCAACTTCTCTCAGGTCCTGTTTAACAA...CCAAACCTGAGTCCTGTGCAAGAGCATCAAGTGCTCTTCACTTTTGAGCCATCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| CDS-3UTR CCA 90 bp | ATTTATCCCGAACTGGGGCAATCCTTCTGTCCCAGCTTCCCTAGTGCTGAGATTGGATTTCCTGCTGTGTaGCTGAATCCTTGTTTTGGT | + |
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Preference number: 4 (lower is better) Translates to: IYPELGQSFCPSFPSAEIGFPAV*LNPCFG Trigger: ACCAAAACAAGGATTCAGCCACACAGCAGGAAATCC...AATCTCAGCACTAGGGAAGCTGGGACAGAAGGATTGCCCCAGTTCGGGATAAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| CDS-3UTR TCA 90 bp | ATCCCGAACTGGGGCAATCCTTCTGTCCCAGCTTCCCTAGTGCTGAGATTAAAGGAAGGTAATAAGCTTTaGATTGGATTTCCTGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: IPNWGNPSVPASLVLRLKEGNKL*IGFPAV Trigger: CACAGCAGGAAATCCAATTCAAAGCTTATTACCTTC...CTTTAATCTCAGCACTAGGGAAGCTGGGACAGAAGGATTGCCCCAGTTCGGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| CDS-3UTR TCA 90 bp | TTCTTTGTTTTGTTTTGGGACAGGCCATCATGTAGCCTACGCTGGCCTCAGATTGGTAAAGCTCCTCACTaGGCTGTTCCATCTCTTCTA | + |
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Preference number: 4 (lower is better) Translates to: FFVLFWDRPSCSLRWPQIGKAPH*AVPSLL Trigger: TAGAAGAGATGGAACAGCTCAGTGAGGAGCTTTACC...AATCTGAGGCCAGCGTAGGCTACATGATGGCCTGTCCCAAAACAAAACAAAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| 3UTR CAA 72 bp | TTATGGTTGGAGGGATGGCTCAAAAGTGAAGAGCACTaGATGCTCTTGCACAGGACTCAGGTTTGGTACCTA | + |
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Preference number: 4 (lower is better) Translates to: LWLEGWLKSEEH*MLLHRTQVWYL Trigger: TAGGTACCAAACCTGAGTCCTGTGCAAGAGCATCAAGTGCTCTTCACTTTTGAGCCATCCCTCCAACCATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| CDS-3UTR GCA 90 bp | AATTTATGGTTGGAGGGATGGCTCAAAAGTGAAGAGCACTTGATGCTCTTGCACTTGAATTGGATTTCCTaGTGTGTGGCTGAATCCTTG | + |
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Preference number: 4 (lower is better) Translates to: NLWLEGWLKSEEHLMLLHLNWIS*CVAESL Trigger: CAAGGATTCAGCCACACAGCAGGAAATCCAATTCAA...GTGCAAGAGCATCAAGTGCTCTTCACTTTTGAGCCATCCCTCCAACCATAAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| 3UTR CAA 72 bp | CAGCACAAAATGTATGAATGTAAAGTTAATTTATGGTaGGAGGGATGGCTCAAAAGTGAAGAGCACTTGATG | + |
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Preference number: 4 (lower is better) Translates to: QHKMYECKVNLW*EGWLKSEEHLM Trigger: CATCAAGTGCTCTTCACTTTTGAGCCATCCCTCCAACCATAAATTAACTTTACATTCATACATTTTGTGCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| CDS-3UTR CAA 90 bp | GGCAATCCTTCTGTCCCAGCTTCCCTAGTGCTGAGATTAAAGGTGTGCACGACCTGGAGGTCAGCGTACTaGTCTTTCAGCTCCTGGTTT | + |
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Preference number: 5 (lower is better) Translates to: GNPSVPASLVLRLKVCTTWRSAY*SFSSWF Trigger: AAACCAGGAGCTGAAAGACAAGTACGCTGACCTCCA...GGTCGTGCACACCTTTAATCTCAGCACTAGGGAAGCTGGGACAGAAGGATTGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| CDS-3UTR CAA 90 bp | TGGCCTCAGATTCACTGTGTAGCTAAGGATGGCCTTAAACTTCTGGTCCTCAGTCAGCTCCTGGTTTTGTaGGTAAAGCTCCTCACTGAG | + |
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Preference number: 5 (lower is better) Translates to: WPQIHCVAKDGLKLLVLSQLLVL*VKLLTE Trigger: CTCAGTGAGGAGCTTTACCAACAAAACCAGGAGCTG...ACTGAGGACCAGAAGTTTAAGGCCATCCTTAGCTACACAGTGAATCTGAGGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| CDS-3UTR CAA 90 bp | ATCCCGAACTGGGGCAATCCTTCTGTCCCAGCTTCCCTAGTGCTGAGATTAAAGGTAATAAGCTTTGAATaGGATTTCCTGCTGTGTGGC | + |
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Preference number: 5 (lower is better) Translates to: IPNWGNPSVPASLVLRLKVISFE*DFLLCG Trigger: GCCACACAGCAGGAAATCCAATTCAAAGCTTATTAC...CTTTAATCTCAGCACTAGGGAAGCTGGGACAGAAGGATTGCCCCAGTTCGGGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| CDS-3UTR CAA 90 bp | TGGCTCAAAAGTGAAGAGCACTTGATGCTCTTGCACAGGACTCAGGTTTGGTACTGTGTGGCTGAATCCTaGTTTTGGTCTTTTGGCAAG | + |
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Preference number: 5 (lower is better) Translates to: WLKSEEHLMLLHRTQVWYCVAES*FWSFGK Trigger: CTTGCCAAAAGACCAAAACAAGGATTCAGCCACACA...GTACCAAACCTGAGTCCTGTGCAAGAGCATCAAGTGCTCTTCACTTTTGAGCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| CDS TCA 90 bp | AGCAGAACTGGTAGCGCTCCACATCCTTGGGAAGGTAATAAGCTTTaGATTGGATTTCCTGCTGTGTGGCTGAATCCTTGTTTTGGTCTT | + |
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Preference number: 5 (lower is better) Translates to: SRTGSAPHPWEGNKL*IGFPAVWLNPCFGL Trigger: AAGACCAAAACAAGGATTCAGCCACACAGCAGGAAATCCAATTCAAAGCTTATTACCTTCCCAAGGATGTGGAGCGCTACCAGTTCTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068686.13 ENSMUST00000097162.6 |
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| CDS-3UTR CAA 90 bp | TATGAATGTAAAGTTAATTTATGGTTGGAGGGATGGCTCAAAAGTGAAGAGCACATGCCAATCCAGTCCTaGCGTCGAGGGATGAACTTT | + |
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Preference number: 5 (lower is better) Translates to: YECKVNLWLEGWLKSEEHMPIQS*RRGMNF Trigger: AAAGTTCATCCCTCGACGCAAGGACTGGATTGGCAT...GTGCTCTTCACTTTTGAGCCATCCCTCCAACCATAAATTAACTTTACATTCATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068686.13 |
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| CDS GCA 72 bp | TGTGTTGCTTCCAGTGCCACCTGCTTCCTCTGTAGCTaGTCATGGAGGTCAGCGTACTTGTCTTTCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: CVASSATCFLCS*SWRSAYLSFSS Trigger: GGAGCTGAAAGACAAGTACGCTGACCTCCATGAGCAGCTACAGAGGAAGCAGGTGGCACTGGAAGCAACACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068686.13 ENSMUST00000097162.6 |
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| CDS GCA 72 bp | GTCTTATTGACCCTCTGTGTTGCTTCCAGTGCCACCTaGTTCCTCTGTAGCTGCTCATGGAGGTCAGCGTAC | + |
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Preference number: 6 (lower is better) Translates to: VLLTLCVASSAT*FLCSCSWRSAY Trigger: GTACGCTGACCTCCATGAGCAGCTACAGAGGAAGCAGGTGGCACTGGAAGCAACACAGAGGGTCAATAAGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068686.13 ENSMUST00000097162.6 |
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| CDS CCA 72 bp | GCTTCCAGTGCCACCTGCTTCCTCTGTAGCTGCTCATaGAGGTCAGCGTACTTGTCTTTCAGCTCCTGGTTT | + |
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Preference number: 6 (lower is better) Translates to: ASSATCFLCSCS*RSAYLSFSSWF Trigger: AAACCAGGAGCTGAAAGACAAGTACGCTGACCTCCATGAGCAGCTACAGAGGAAGCAGGTGGCACTGGAAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068686.13 ENSMUST00000097162.6 |
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| CDS CAA 90 bp | TTCTCCCAGGAGGCCTTCTCTTCCACTTTGTGTTCTAAGGTCTTATaGACCCTCTGTGTTGCTTCCAGTGCCACCTGCTTCCTCTGTAGC | + |
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Preference number: 6 (lower is better) Translates to: FSQEAFSSTLCSKVL*TLCVASSATCFLCS Trigger: GCTACAGAGGAAGCAGGTGGCACTGGAAGCAACACAGAGGGTCAATAAGACCTTAGAACACAAAGTGGAAGAGAAGGCCTCCTGGGAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068686.13 ENSMUST00000097162.6 |
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| CDS CAA 72 bp | CCTCGTCAGGGTCTGGACAAAACTGGAAAGGGACACTaGTTCCCCGGACTAAACCATCTTCATCCACATAGC | + |
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Preference number: 6 (lower is better) Translates to: PRQGLDKTGKGH*FPGLNHLHPHS Trigger: GCTATGTGGATGAAGATGGTTTAGTCCGGGGAACAAGTGTCCCTTTCCAGTTTTGTCCAGACCCTGACGAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068686.13 ENSMUST00000097162.6 |
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| CDS TCA 72 bp | AGGCCTTCTCTTCCACTTTGTGTTCTAAGGTCTTATTaGCCCTCTGTGTTGCTTCCAGTGCCACCTGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: RPSLPLCVLRSY*PSVLLPVPPAS Trigger: GGAAGCAGGTGGCACTGGAAGCAACACAGAGGGTCAATAAGACCTTAGAACACAAAGTGGAAGAGAAGGCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068686.13 ENSMUST00000097162.6 |
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| CDS CAA 72 bp | GAGGCCTTCTCTTCCACTTTGTGTTCTAAGGTCTTATaGACCCTCTGTGTTGCTTCCAGTGCCACCTGCTTC | + |
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Preference number: 6 (lower is better) Translates to: EAFSSTLCSKVL*TLCVASSATCF Trigger: GAAGCAGGTGGCACTGGAAGCAACACAGAGGGTCAATAAGACCTTAGAACACAAAGTGGAAGAGAAGGCCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068686.13 ENSMUST00000097162.6 |
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| CDS CAA 90 bp | CCATTATGTCCTCGTCAGGGTCTGGACAAAACTGGAAAGGGACACTaGTTCCCCGGACTAAACCATCTTCATCCACATAGCAGAACTGGT | + |
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Preference number: 6 (lower is better) Translates to: PLCPRQGLDKTGKGH*FPGLNHLHPHSRTG Trigger: ACCAGTTCTGCTATGTGGATGAAGATGGTTTAGTCCGGGGAACAAGTGTCCCTTTCCAGTTTTGTCCAGACCCTGACGAGGACATAATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068686.13 ENSMUST00000097162.6 |
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| CDS CAA 72 bp | ATGGAGGTCAGCGTACTTGTCTTTCAGCTCCTGGTTTaGTTGGTAAAGCTCCTCACTGAGCTGTTCCATCTC | + |
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Preference number: 6 (lower is better) Translates to: MEVSVLVFQLLV*LVKLLTELFHL Trigger: GAGATGGAACAGCTCAGTGAGGAGCTTTACCAACAAAACCAGGAGCTGAAAGACAAGTACGCTGACCTCCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000068686.13 ENSMUST00000097162.6 |
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| CDS CAA 90 bp | CTGCTCATGGAGGTCAGCGTACTTGTCTTTCAGCTCCTGGTTTTGTaGGTAAAGCTCCTCACTGAGCTGTTCCATCTCTTCTACCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: LLMEVSVLVFQLLVL*VKLLTELFHLFYLF Trigger: GAAAAGGTAGAAGAGATGGAACAGCTCAGTGAGGAGCTTTACCAACAAAACCAGGAGCTGAAAGACAAGTACGCTGACCTCCATGAGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068686.13 ENSMUST00000097162.6 |
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| CDS CCA 72 bp | CTTATTGATAACAACCATTATGTCCTCGTCAGGGTCTaGACAAAACTGGAAAGGGACACTTGTTCCCCGGAC | + |
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Preference number: 6 (lower is better) Translates to: LIDNNHYVLVRV*TKLERDTCSPD Trigger: GTCCGGGGAACAAGTGTCCCTTTCCAGTTTTGTCCAGACCCTGACGAGGACATAATGGTTGTTATCAATAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068686.13 ENSMUST00000097162.6 |
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| CDS TCA 72 bp | AATCCTTGTTTTGGTCTTTTGGCAAGGGAGCCCACATaGAGGTATAATACTCCTGAGTGGTCTTCCACCCTA | + |
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Preference number: 6 (lower is better) Translates to: NPCFGLLAREPT*RYNTPEWSSTL Trigger: TAGGGTGGAAGACCACTCAGGAGTATTATACCTTCATGTGGGCTCCCTTGCCAAAAGACCAAAACAAGGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068686.13 ENSMUST00000097162.6 |
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| CDS CAA 72 bp | TCACTGAGCTGTTCCATCTCTTCTACCTTTTCCTTATaGATAACAACCATTATGTCCTCGTCAGGGTCTGGA | + |
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Preference number: 6 (lower is better) Translates to: SLSCSISSTFSL*ITTIMSSSGSG Trigger: TCCAGACCCTGACGAGGACATAATGGTTGTTATCAATAAGGAAAAGGTAGAAGAGATGGAACAGCTCAGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068686.13 ENSMUST00000097162.6 |
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