Pregenerated sensors for CALCB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030666Ensembl transcript IDs: ENSMUST00000032902.11, ENSMUST00000182044.2, ENSMUST00000182816.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCAGTGATTTCACATCTCCCTAAGGTTCAACAAAGCTGCTACCATTaGCTGGATGGCTCTTGGAGAACCTATTTGGTTTGCTGCAAAGGA | + |
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Preference number: 1 (lower is better) Translates to: AVISHLPKVQQSCYH*LDGSWRTYLVCCKG Trigger: TCCTTTGCAGCAAACCAAATAGGTTCTCCAAGAGCCATCCAGCCAATGGTAGCAGCTTTGTTGAACCTTAGGGAGATGTGAAATCACTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| 3UTR CCA 90 bp | GGTTTGCTGCAAAGGATGCCAGTGGGAGACACCATCATATTTGACTaGCCACAGACTCAGTATAAAAATAATGCAAACAAACACAGAATT | + |
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Preference number: 1 (lower is better) Translates to: GLLQRMPVGDTIIFD*PQTQYKNNANKHRI Trigger: AATTCTGTGTTTGTTTGCATTATTTTTATACTGAGTCTGTGGCCAGTCAAATATGATGGTGTCTCCCACTGGCATCCTTTGCAGCAAACC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| 3UTR TCA 90 bp | TGGTACAATTTTGACATTTCCTTAAATAAATTTGCAATCATGTTCTaGGACATCAAGGCACAGCATCTCCTCTACCATAGGTCCCCAGTG | + |
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Preference number: 1 (lower is better) Translates to: WYNFDISLNKFAIMF*DIKAQHLLYHRSPV Trigger: CACTGGGGACCTATGGTAGAGGAGATGCTGTGCCTTGATGTCTCAGAACATGATTGCAAATTTATTTAAGGAAATGTCAAAATTGTACCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| 3UTR-3UTR GCA 90 bp | ACATCAAGGCACAGCATCTCCTCTACCATAGGTCCCCAGTGGCTACAAGAGGCAACCTATTTGGTTTGCTaGAAAGGATGCCAGTGGGAG | + |
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Preference number: 2 (lower is better) Translates to: TSRHSISSTIGPQWLQEATYLVC*KGCQWE Trigger: CTCCCACTGGCATCCTTTGCAGCAAACCAAATAGGT...TGCCTCTTGTAGCCACTGGGGACCTATGGTAGAGGAGATGCTGTGCCTTGATGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| 3UTR CAA 90 bp | TATTTGGTTTGCTGCAAAGGATGCCAGTGGGAGACACCATCATATTaGACTGGCCACAGACTCAGTATAAAAATAATGCAAACAAACACA | + |
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Preference number: 2 (lower is better) Translates to: YLVCCKGCQWETPSY*TGHRLSIKIMQTNT Trigger: TGTGTTTGTTTGCATTATTTTTATACTGAGTCTGTGGCCAGTCAAATATGATGGTGTCTCCCACTGGCATCCTTTGCAGCAAACCAAATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| 3UTR CCA 72 bp | GCTACCATTGGCTGGATGGCTCTTGGAGAACCTATTTaGTTTGCTGCAAAGGATGCCAGTGGGAGACACCAT | + |
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Preference number: 3 (lower is better) Translates to: ATIGWMALGEPI*FAAKDASGRHH Trigger: ATGGTGTCTCCCACTGGCATCCTTTGCAGCAAACCAAATAGGTTCTCCAAGAGCCATCCAGCCAATGGTAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| 3UTR-3UTR CAA 90 bp | CATCTCCCTAAGGTTCAACAAAGCTGCTACCATTGGCTGGATGGCTCTTGGAGAGCATACACATTGTCCTaGAGGCCTTCACATCGGGTT | + |
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Preference number: 3 (lower is better) Translates to: HLPKVQQSCYHWLDGSWRAYTLS*RPSHRV Trigger: AACCCGATGTGAAGGCCTCAAGGACAATGTGTATGC...TCTCCAAGAGCCATCCAGCCAATGGTAGCAGCTTTGTTGAACCTTAGGGAGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| 3UTR-3UTR CAA 90 bp | TCTGAGACATCAAGGCACAGCATCTCCTCTACCATAGGTCCCCAGTGGCTACAAGAGACACCATCATATTaGACTGGCCACAGACTCAGT | + |
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Preference number: 3 (lower is better) Translates to: SETSRHSISSTIGPQWLQETPSY*TGHRLS Trigger: ACTGAGTCTGTGGCCAGTCAAATATGATGGTGTCTC...TTGTAGCCACTGGGGACCTATGGTAGAGGAGATGCTGTGCCTTGATGTCTCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| 3UTR GCA 72 bp | GGCTCTTGGAGAACCTATTTGGTTTGCTGCAAAGGATaGCAGTGGGAGACACCATCATATTTGACTGGCCAC | + |
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Preference number: 3 (lower is better) Translates to: GSWRTYLVCCKG*QWETPSYLTGH Trigger: GTGGCCAGTCAAATATGATGGTGTCTCCCACTGGCATCCTTTGCAGCAAACCAAATAGGTTCTCCAAGAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| 3UTR GCA 72 bp | CATTGGCTGGATGGCTCTTGGAGAACCTATTTGGTTTaGTGCAAAGGATGCCAGTGGGAGACACCATCATAT | + |
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Preference number: 3 (lower is better) Translates to: HWLDGSWRTYLV*CKGCQWETPSY Trigger: ATATGATGGTGTCTCCCACTGGCATCCTTTGCAGCAAACCAAATAGGTTCTCCAAGAGCCATCCAGCCAATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| 3UTR CCA 72 bp | TGGAGAACCTATTTGGTTTGCTGCAAAGGATGCCAGTaGGAGACACCATCATATTTGACTGGCCACAGACTC | + |
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Preference number: 3 (lower is better) Translates to: WRTYLVCCKGCQ*ETPSYLTGHRL Trigger: GAGTCTGTGGCCAGTCAAATATGATGGTGTCTCCCACTGGCATCCTTTGCAGCAAACCAAATAGGTTCTCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| 3UTR GCA 72 bp | GCAGTGATTTCACATCTCCCTAAGGTTCAACAAAGCTaGTACCATTGGCTGGATGGCTCTTGGAGAACCTAT | + |
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Preference number: 3 (lower is better) Translates to: AVISHLPKVQQS*YHWLDGSWRTY Trigger: ATAGGTTCTCCAAGAGCCATCCAGCCAATGGTAGCAGCTTTGTTGAACCTTAGGGAGATGTGAAATCACTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| 3UTR-3UTR CAA 90 bp | ACTCATTTATACTTGGTTTCATTCCTCTCAAGTAACAACGGTGGTTTCCCTCATGCATACACATTGTCCTaGAGGCCTTCACATCGGGTT | + |
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Preference number: 3 (lower is better) Translates to: THLYLVSFLSSNNGGFPHAYTLS*RPSHRV Trigger: AACCCGATGTGAAGGCCTCAAGGACAATGTGTATGC...ATGAGGGAAACCACCGTTGTTACTTGAGAGGAATGAAACCAAGTATAAATGAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032902.11 ENSMUST00000182816.2 |
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| 3UTR CCA 72 bp | CAAAGGATGCCAGTGGGAGACACCATCATATTTGACTaGCCACAGACTCAGTATAAAAATAATGCAAACAAA | + |
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Preference number: 3 (lower is better) Translates to: QRMPVGDTIIFD*PQTQYKNNANK Trigger: TTTGTTTGCATTATTTTTATACTGAGTCTGTGGCCAGTCAAATATGATGGTGTCTCCCACTGGCATCCTTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| 3UTR TCA 72 bp | TTTGACATTTCCTTAAATAAATTTGCAATCATGTTCTaGGACATCAAGGCACAGCATCTCCTCTACCATAGG | + |
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Preference number: 3 (lower is better) Translates to: FDISLNKFAIMF*DIKAQHLLYHR Trigger: CCTATGGTAGAGGAGATGCTGTGCCTTGATGTCTCAGAACATGATTGCAAATTTATTTAAGGAAATGTCAAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| CDS-3UTR GCA 90 bp | CAAAGGATGCCAGTGGGAGACACCATCATATTTGACTGGCCACAGACTCAGTATGGGCAGCCTGGAGGCTaGTGGCCAGGCACAGGACCC | + |
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Preference number: 4 (lower is better) Translates to: QRMPVGDTIIFDWPQTQYGQPGG*WPGTGP Trigger: GGGTCCTGTGCCTGGCCAGCAGCCTCCAGGCTGCCC...ATACTGAGTCTGTGGCCAGTCAAATATGATGGTGTCTCCCACTGGCATCCTTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| CDS-3UTR TCA 90 bp | CTCCCTAAGGTTCAACAAAGCTGCTACCATTGGCTGGATGGCTCTTGGAGAACCTCTCCAAAGCGGACCTaGAAGGGGCAGCCTGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: LPKVQQSCYHWLDGSWRTSPKRT*KGQPGG Trigger: GCCTCCAGGCTGCCCCTTTCAGGTCCGCTTTGGAGA...GGTTCTCCAAGAGCCATCCAGCCAATGGTAGCAGCTTTGTTGAACCTTAGGGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| CDS-3UTR TCA 90 bp | TCTGAGACATCAAGGCACAGCATCTCCTCTACCATAGGTCCCCAGTGGCTACAACTTCAGCACACCTCCTaGTCTGCTCAGCAGGTCTGC | + |
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Preference number: 4 (lower is better) Translates to: SETSRHSISSTIGPQWLQLQHTS*SAQQVC Trigger: GCAGACCTGCTGAGCAGATCAGGAGGTGTGCTGAAG...TTGTAGCCACTGGGGACCTATGGTAGAGGAGATGCTGTGCCTTGATGTCTCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| CDS-3UTR GCA 90 bp | TTTGGTTTGCTGCAAAGGATGCCAGTGGGAGACACCATCATATTTGACTGGCCAGCACACCTCCTGATCTaGTCAGCAGGTCTGCCAGCC | + |
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Preference number: 4 (lower is better) Translates to: FGLLQRMPVGDTIIFDWPAHLLI*SAGLPA Trigger: GGCTGGCAGACCTGCTGAGCAGATCAGGAGGTGTGC...TGGCCAGTCAAATATGATGGTGTCTCCCACTGGCATCCTTTGCAGCAAACCAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| CDS-3UTR CCA 90 bp | ACATCAAGGCACAGCATCTCCTCTACCATAGGTCCCCAGTGGCTACAAGAGGCACAGAGCCCACATCGGTaGGCACAAAGTTGTCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: TSRHSISSTIGPQWLQEAQSPHR*AQSCPS Trigger: TGAAGGACAACTTTGTGCCCACCGATGTGGGCTCTG...TGCCTCTTGTAGCCACTGGGGACCTATGGTAGAGGAGATGCTGTGCCTTGATGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| CDS-3UTR GCA 90 bp | ACTCATTTATACTTGGTTTCATTCCTCTCAAGTAACAACGGTGGTTTCCCTCATGGGCAGCCTGGAGGCTaGTGGCCAGGCACAGGACCC | + |
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Preference number: 4 (lower is better) Translates to: THLYLVSFLSSNNGGFPHGQPGG*WPGTGP Trigger: GGGTCCTGTGCCTGGCCAGCAGCCTCCAGGCTGCCC...ATGAGGGAAACCACCGTTGTTACTTGAGAGGAATGAAACCAAGTATAAATGAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032902.11 ENSMUST00000182816.2 |
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| CDS-3UTR TCA 90 bp | GGTTTGCTGCAAAGGATGCCAGTGGGAGACACCATCATATTTGACTGGCCACAGGGACCCATATGCTGCTaGGAGCCAGAAAAGGAAAGA | + |
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Preference number: 4 (lower is better) Translates to: GLLQRMPVGDTIIFDWPQGPICC*EPEKER Trigger: TCTTTCCTTTTCTGGCTCTCAGCAGCATATGGGTCC...CTGTGGCCAGTCAAATATGATGGTGTCTCCCACTGGCATCCTTTGCAGCAAACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| 3UTR CAA 72 bp | TGCTACCATTGGCTGGATGGCTCTTGGAGAACCTATTaGGTTTGCTGCAAAGGATGCCAGTGGGAGACACCA | + |
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Preference number: 4 (lower is better) Translates to: CYHWLDGSWRTY*VCCKGCQWETP Trigger: TGGTGTCTCCCACTGGCATCCTTTGCAGCAAACCAAATAGGTTCTCCAAGAGCCATCCAGCCAATGGTAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| 3UTR CAA 72 bp | CCATTGGCTGGATGGCTCTTGGAGAACCTATTTGGTTaGCTGCAAAGGATGCCAGTGGGAGACACCATCATA | + |
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Preference number: 4 (lower is better) Translates to: PLAGWLLENLFG*LQRMPVGDTII Trigger: TATGATGGTGTCTCCCACTGGCATCCTTTGCAGCAAACCAAATAGGTTCTCCAAGAGCCATCCAGCCAATGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| CDS-3UTR TCA 90 bp | ACTCATTTATACTTGGTTTCATTCCTCTCAAGTAACAACGGTGGTTTCCCTCATTCTCCAAAGCGGACCTaGAAGGGGCAGCCTGGAGGC | + |
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Preference number: 4 (lower is better) Translates to: THLYLVSFLSSNNGGFPHSPKRT*KGQPGG Trigger: GCCTCCAGGCTGCCCCTTTCAGGTCCGCTTTGGAGA...ATGAGGGAAACCACCGTTGTTACTTGAGAGGAATGAAACCAAGTATAAATGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032902.11 ENSMUST00000182816.2 |
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| 3UTR CAA 72 bp | GGTTCAACAAAGCTGCTACCATTGGCTGGATGGCTCTaGGAGAACCTATTTGGTTTGCTGCAAAGGATGCCA | + |
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Preference number: 4 (lower is better) Translates to: GSTKLLPLAGWL*ENLFGLLQRMP Trigger: TGGCATCCTTTGCAGCAAACCAAATAGGTTCTCCAAGAGCCATCCAGCCAATGGTAGCAGCTTTGTTGAACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| CDS-3UTR CCA 90 bp | GTTCAACAAAGCTGCTACCATTGGCTGGATGGCTCTTGGAGAACCTATTTGGTTCCTGTTCCAGCTTCCTaGCCTTCATCTGCTCATAGT | + |
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Preference number: 4 (lower is better) Translates to: VQQSCYHWLDGSWRTYLVPVPAS*PSSAHS Trigger: ACTATGAGCAGATGAAGGCCAGGAAGCTGGAACAGG...AACCAAATAGGTTCTCCAAGAGCCATCCAGCCAATGGTAGCAGCTTTGTTGAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| CDS-3UTR CCA 90 bp | ACTCATTTATACTTGGTTTCATTCCTCTCAAGTAACAACGGTGGTTTCCCTCATCCTGTTCCAGCTTCCTaGCCTTCATCTGCTCATAGT | + |
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Preference number: 4 (lower is better) Translates to: THLYLVSFLSSNNGGFPHPVPAS*PSSAHS Trigger: ACTATGAGCAGATGAAGGCCAGGAAGCTGGAACAGG...ATGAGGGAAACCACCGTTGTTACTTGAGAGGAATGAAACCAAGTATAAATGAGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032902.11 ENSMUST00000182816.2 |
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| CDS-3UTR CCA 90 bp | TATACTTGGTTTCATTCCTCTCAAGTAACAACGGTGGTTTCCCTCATTATCTATCAGAGCCCACATCGGTaGGCACAAAGTTGTCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: YTWFHSSQVTTVVSLIIYQSPHR*AQSCPS Trigger: TGAAGGACAACTTTGTGCCCACCGATGTGGGCTCTG...ATAGATAATGAGGGAAACCACCGTTGTTACTTGAGAGGAATGAAACCAAGTATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032902.11 ENSMUST00000182816.2 |
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| 3UTR CAA 72 bp | TGCTGCAAAGGATGCCAGTGGGAGACACCATCATATTaGACTGGCCACAGACTCAGTATAAAAATAATGCAA | + |
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Preference number: 4 (lower is better) Translates to: CCKGCQWETPSY*TGHRLSIKIMQ Trigger: TTGCATTATTTTTATACTGAGTCTGTGGCCAGTCAAATATGATGGTGTCTCCCACTGGCATCCTTTGCAGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| CDS-3UTR TCA 90 bp | TATACTTGGTTTCATTCCTCTCAAGTAACAACGGTGGTTTCCCTCATTATCTATGGACCCATATGCTGCTaGGAGCCAGAAAAGGAAAGA | + |
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Preference number: 4 (lower is better) Translates to: YTWFHSSQVTTVVSLIIYGPICC*EPEKER Trigger: TCTTTCCTTTTCTGGCTCTCAGCAGCATATGGGTCC...ATAGATAATGAGGGAAACCACCGTTGTTACTTGAGAGGAATGAAACCAAGTATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032902.11 ENSMUST00000182816.2 |
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| CDS-3UTR TCA 90 bp | ACTCATTTATACTTGGTTTCATTCCTCTCAAGTAACAACGGTGGTTTCCCTCATATCTCTTCTGAGCAGTaGCACTTGCTGAAGTTAAGA | + |
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Preference number: 4 (lower is better) Translates to: THLYLVSFLSSNNGGFPHISSEQ*HLLKLR Trigger: TCTTAACTTCAGCAAGTGTCACTGCTCAGAAGAGAT...ATGAGGGAAACCACCGTTGTTACTTGAGAGGAATGAAACCAAGTATAAATGAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182816.2 |
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| CDS-3UTR GCA 90 bp | GGAGACACCATCATATTTGACTGGCCACAGACTCAGTATAAAAATAATGCAAACATAGTCCTGCATCAGTaGAGCAAGCAAGAGATGTTT | + |
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Preference number: 4 (lower is better) Translates to: GDTIIFDWPQTQYKNNANIVLHQ*SKQEMF Trigger: AAACATCTCTTGCTTGCTGCACTGATGCAGGACTAT...GTTTGCATTATTTTTATACTGAGTCTGTGGCCAGTCAAATATGATGGTGTCTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| CDS-3UTR GCA 90 bp | ACTCATTTATACTTGGTTTCATTCCTCTCAAGTAACAACGGTGGTTTCCCTCATATAGTCCTGCATCAGTaGAGCAAGCAAGAGATGTTT | + |
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Preference number: 4 (lower is better) Translates to: THLYLVSFLSSNNGGFPHIVLHQ*SKQEMF Trigger: AAACATCTCTTGCTTGCTGCACTGATGCAGGACTAT...ATGAGGGAAACCACCGTTGTTACTTGAGAGGAATGAAACCAAGTATAAATGAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032902.11 ENSMUST00000182816.2 |
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| CDS-3UTR TCA 90 bp | TATACTTGGTTTCATTCCTCTCAAGTAACAACGGTGGTTTCCCTCATTATCTATTCAGAAGTGCTTATCTaGTCCTTAGCATGCTTGATG | + |
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Preference number: 4 (lower is better) Translates to: YTWFHSSQVTTVVSLIIYSEVLI*SLACLM Trigger: CATCAAGCATGCTAAGGATCAGATAAGCACTTCTGA...ATAGATAATGAGGGAAACCACCGTTGTTACTTGAGAGGAATGAAACCAAGTATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182816.2 |
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| CDS CCA 90 bp | CCCAGGTCTAGGCTGCTCTCCAAAGCGGACCTGAAAGGGGCAGCCTaGAGGCTGCTGGCCAGGCACAGGACCCATATGCTGCTGAGAGCC | + |
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Preference number: 5 (lower is better) Translates to: PRSRLLSKADLKGAA*RLLARHRTHMLLRA Trigger: GGCTCTCAGCAGCATATGGGTCCTGTGCCTGGCCAGCAGCCTCCAGGCTGCCCCTTTCAGGTCCGCTTTGGAGAGCAGCCTAGACCTGGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032902.11 ENSMUST00000182044.2 ENSMUST00000182816.2 |
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| CDS GCA 90 bp | CTGTTCCAGCTTCCTGGCCTTCATCTGCTCATAGTCCTGCATCAGTaGAGCAAGCAAGAGATGTTTTTCCTGGTCGCCGAGGGTGCCCAG | + |
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Preference number: 5 (lower is better) Translates to: LFQLPGLHLLIVLHQ*SKQEMFFLVAEGAQ Trigger: CTGGGCACCCTCGGCGACCAGGAAAAACATCTCTTGCTTGCTGCACTGATGCAGGACTATGAGCAGATGAAGGCCAGGAAGCTGGAACAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032902.11 ENSMUST00000182816.2 |
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| CDS-3UTR CAA 90 bp | GTTCAACAAAGCTGCTACCATTGGCTGGATGGCTCTTGGAGAACCTATTTGGTTGGAGCCCTTAGTCTCTaGCTCCTCCTGTTCCAGCTT | + |
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Preference number: 5 (lower is better) Translates to: VQQSCYHWLDGSWRTYLVGALSL*LLLFQL Trigger: AAGCTGGAACAGGAGGAGCAAGAGACTAAGGGCTCC...AACCAAATAGGTTCTCCAAGAGCCATCCAGCCAATGGTAGCAGCTTTGTTGAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032902.11 |
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| CDS-3UTR CAA 90 bp | TTAATAGGCATGGTGAGTTCAACTTTATGTAACCTTCTTCCTGGAGCTGCTAGTTCGGTGGGCACAAAGTaGTCCTTCAGCACACCTCCT | + |
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Preference number: 5 (lower is better) Translates to: LIGMVSSTLCNLLPGAASSVGTK*SFSTPP Trigger: AGGAGGTGTGCTGAAGGACAACTTTGTGCCCACCGA...ACTAGCAGCTCCAGGAAGAAGGTTACATAAAGTTGAACTCACCATGCCTATTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032902.11 ENSMUST00000182816.2 |
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| CDS-3UTR CAA 90 bp | ACTCATTTATACTTGGTTTCATTCCTCTCAAGTAACAACGGTGGTTTCCCTCATTCGGTGGGCACAAAGTaGTCCTTCAGCACACCTCCT | + |
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Preference number: 5 (lower is better) Translates to: THLYLVSFLSSNNGGFPHSVGTK*SFSTPP Trigger: AGGAGGTGTGCTGAAGGACAACTTTGTGCCCACCGA...ATGAGGGAAACCACCGTTGTTACTTGAGAGGAATGAAACCAAGTATAAATGAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032902.11 ENSMUST00000182816.2 |
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| CDS-3UTR CAA 90 bp | TATACTTGGTTTCATTCCTCTCAAGTAACAACGGTGGTTTCCCTCATTATCTATGGAGCCCTTAGTCTCTaGCTCCTCCTGTTCCAGCTT | + |
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Preference number: 5 (lower is better) Translates to: YTWFHSSQVTTVVSLIIYGALSL*LLLFQL Trigger: AAGCTGGAACAGGAGGAGCAAGAGACTAAGGGCTCC...ATAGATAATGAGGGAAACCACCGTTGTTACTTGAGAGGAATGAAACCAAGTATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032902.11 ENSMUST00000182816.2 |
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| CDS CCA 72 bp | GGCGGCGGCGGCCGAAGGCTTCAGAGCCCACATCGGTaGGCACAAAGTTGTCCTTCAGCACACCTCCTGATC | + |
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Preference number: 6 (lower is better) Translates to: GGGGRRLQSPHR*AQSCPSAHLLI Trigger: GATCAGGAGGTGTGCTGAAGGACAACTTTGTGCCCACCGATGTGGGCTCTGAAGCCTTCGGCCGCCGCCGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032902.11 ENSMUST00000182816.2 |
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| CDS GCA 72 bp | GCATGCTTGATGTCATTGCGGGAGCCCTTAGTCTCTTaGTCCTCCTGTTCCAGCTTCCTGGCCTTCATCTGC | + |
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Preference number: 6 (lower is better) Translates to: ACLMSLREPLVS*SSCSSFLAFIC Trigger: GCAGATGAAGGCCAGGAAGCTGGAACAGGAGGAGCAAGAGACTAAGGGCTCCCGCAATGACATCAAGCATGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000182816.2 |
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| CDS GCA 72 bp | CTTCCTGGCCTTCATCTGCTCATAGTCCTGCATCAGTaGAGCAAGCAAGAGATGTTTTTCCTGGTCGCCGAG | + |
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Preference number: 6 (lower is better) Translates to: LPGLHLLIVLHQ*SKQEMFFLVAE Trigger: CTCGGCGACCAGGAAAAACATCTCTTGCTTGCTGCACTGATGCAGGACTATGAGCAGATGAAGGCCAGGAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032902.11 ENSMUST00000182816.2 |
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