Pregenerated sensors for CALCA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030669Ensembl transcript IDs: ENSMUST00000032906.11, ENSMUST00000032907.9, ENSMUST00000205714.2, ENSMUST00000205933.2, ENSMUST00000206156.2, ENSMUST00000206853.2
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTGGGACTTTCTCCTCACCCACTGGGGATTTCAGATACCATTCTTTaGCTCAGGAAAGCAACCAGTAATAGCCTGGAGAGCAACCAGAGA | + |
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Preference number: 1 (lower is better) Translates to: VGLSPHPLGISDTIL*LRKATSNSLESNQR Trigger: TCTCTGGTTGCTCTCCAGGCTATTACTGGTTGCTTTCCTGAGGCAAAGAATGGTATCTGAAATCCCCAGTGGGTGAGGAGAAAGTCCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| 3UTR CCA 90 bp | TTTCAGATACCATTCTTTGCCTCAGGAAAGCAACCAGTAATAGCCTaGAGAGCAACCAGAGAGGAACTACATGCATCAAGTTATAGGAAG | + |
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Preference number: 1 (lower is better) Translates to: FQIPFFASGKQPVIA*RATREELHASSYRK Trigger: CTTCCTATAACTTGATGCATGTAGTTCCTCTCTGGTTGCTCTCCAGGCTATTACTGGTTGCTTTCCTGAGGCAAAGAATGGTATCTGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| 3UTR GCA 90 bp | GATGGTTTATGGGGACCATATTTGCTACCAGATAAGCCAGAACCATaGTGTCATGTTTATTGGATACAGAGTCACATACAACACGATGCA | + |
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Preference number: 1 (lower is better) Translates to: DGLWGPYLLPDKPEP*CHVYWIQSHIQHDA Trigger: TGCATCGTGTTGTATGTGACTCTGTATCCAATAAACATGACAGCATGGTTCTGGCTTATCTGGTAGCAAATATGGTCCCCATAAACCATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032906.11 |
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| 3UTR GCA 90 bp | AGCAGAGTCATCAACATCAACAGGATGGTTTATGGGGACCATATTTaGTACCAGATAAGCCAGAACCATGCTGTCATGTTTATTGGATAC | + |
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Preference number: 1 (lower is better) Translates to: SRVININRMVYGDHI*YQISQNHAVMFIGY Trigger: GTATCCAATAAACATGACAGCATGGTTCTGGCTTATCTGGTAGCAAATATGGTCCCCATAAACCATCCTGTTGATGTTGATGACTCTGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032906.11 |
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| 3UTR-3UTR TCA 90 bp | GGAAGCCAGATGACTGCCCTTGCTCTCTGCCATCTTCCTGAGTGTGCCCTTGCTTGCCATCTTCCTGGGTaGTTCTCTTTTAGCCTGTGG | + |
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Preference number: 2 (lower is better) Translates to: GSQMTALALCHLPECALACHLPG*FSFSLW Trigger: CCACAGGCTAAAAGAGAATCACCCAGGAAGATGGCA...AGCAAGGGCACACTCAGGAAGATGGCAGAGAGCAAGGGCAGTCATCTGGCTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032907.9 |
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| 3UTR GCA 72 bp | GCCTCGTGTCCTGCTAAACAGCAGCCAGGCGGACAGTaGGCTCTCTCCTACCTTCTGGATTCCGCCTTCCTG | + |
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Preference number: 3 (lower is better) Translates to: ASCPAKQQPGGQ*ALSYLLDSAFL Trigger: CAGGAAGGCGGAATCCAGAAGGTAGGAGAGAGCGCACTGTCCGCCTGGCTGCTGTTTAGCAGGACACGAGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000205933.2 |
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| 3UTR CCA 72 bp | TTCTCTTTTAGCCTGTGGGACTTTCTCCTCACCCACTaGGGATTTCAGATACCATTCTTTGCCTCAGGAAAG | + |
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Preference number: 3 (lower is better) Translates to: FSFSLWDFLLTH*GFQIPFFASGK Trigger: CTTTCCTGAGGCAAAGAATGGTATCTGAAATCCCCAGTGGGTGAGGAGAAAGTCCCACAGGCTAAAAGAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| 3UTR GCA 72 bp | ATCAACATCAACAGGATGGTTTATGGGGACCATATTTaGTACCAGATAAGCCAGAACCATGCTGTCATGTTT | + |
|
Preference number: 3 (lower is better) Translates to: ININRMVYGDHI*YQISQNHAVMF Trigger: AAACATGACAGCATGGTTCTGGCTTATCTGGTAGCAAATATGGTCCCCATAAACCATCCTGTTGATGTTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032906.11 |
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| CDS-3UTR GCA 90 bp | AAACAGCAGCCAGGCGGACAGTGCGCTCTCTCCTACCTTCTGGATTCCGCCTTCGCACTGCCTGGAGGCTaGATGCCTGGTACAGGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: KQQPGGQCALSYLLDSAFALPGG*MPGTGA Trigger: TGCTCCTGTACCAGGCATGCAGCCTCCAGGCAGTGC...GAAGGCGGAATCCAGAAGGTAGGAGAGAGCGCACTGTCCGCCTGGCTGCTGTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000205714.2 ENSMUST00000205933.2 |
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| CDS-3UTR GCA 90 bp | TCTCCTACCTTCTGGATTCCGCCTTCCTGTGGATGGGCTAGGCAGGGTAAGGGGGCACTGCCTGGAGGCTaGATGCCTGGTACAGGAGCA | + |
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Preference number: 4 (lower is better) Translates to: SPTFWIPPSCGWARQGKGALPGG*MPGTGA Trigger: TGCTCCTGTACCAGGCATGCAGCCTCCAGGCAGTGC...CCCCTTACCCTGCCTAGCCCATCCACAGGAAGGCGGAATCCAGAAGGTAGGAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000205714.2 ENSMUST00000205933.2 |
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| CDS-3UTR GCA 90 bp | AACAGCAGCCAGGCGGACAGTGCGCTCTCTCCTACCTTCTGGATTCCGCCTTCCATAGTCCTGCACCAGTaGAGCCAGCAGGCGAACTTC | + |
|
Preference number: 4 (lower is better) Translates to: NSSQADSALSPTFWIPPSIVLHQ*SQQANF Trigger: GAAGTTCGCCTGCTGGCTGCACTGGTGCAGGACTAT...GGAAGGCGGAATCCAGAAGGTAGGAGAGAGCGCACTGTCCGCCTGGCTGCTGTT 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000205714.2 ENSMUST00000205933.2 |
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| CDS-3UTR CCA 90 bp | AAACAGCAGCCAGGCGGACAGTGCGCTCTCTCCTACCTTCTGGATTCCGCCTTCCTCAAAGGCACTGCCTaGAGGCTGCATGCCTGGTAC | + |
|
Preference number: 4 (lower is better) Translates to: KQQPGGQCALSYLLDSAFLKGTA*RLHAWY Trigger: GTACCAGGCATGCAGCCTCCAGGCAGTGCCTTTGAG...GAAGGCGGAATCCAGAAGGTAGGAGAGAGCGCACTGTCCGCCTGGCTGCTGTTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000205714.2 ENSMUST00000205933.2 |
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| CDS-3UTR TCA 90 bp | GCTAAACAGCAGCCAGGCGGACAGTGCGCTCTCTCCTACCTTCTGGATTCCGCCACAGGAGCAAGATGCTaGCAACCAGGAAAGGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: AKQQPGGQCALSYLLDSATGARC*QPGKGR Trigger: TCTCCCCTTTCCTGGTTGTCAGCATCTTGCTCCTGT...GGCGGAATCCAGAAGGTAGGAGAGAGCGCACTGTCCGCCTGGCTGCTGTTTAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000205714.2 ENSMUST00000205933.2 |
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| CDS-3UTR GCA 90 bp | AAACAGCAGCCAGGCGGACAGTGCGCTCTCTCCTACCTTCTGGATTCCGCCTTCATAGTCCTGCACCAGTaGAGCCAGCAGGCGAACTTC | + |
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Preference number: 4 (lower is better) Translates to: KQQPGGQCALSYLLDSAFIVLHQ*SQQANF Trigger: GAAGTTCGCCTGCTGGCTGCACTGGTGCAGGACTAT...GAAGGCGGAATCCAGAAGGTAGGAGAGAGCGCACTGTCCGCCTGGCTGCTGTTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000205714.2 ENSMUST00000205933.2 |
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| CDS-3UTR CCA 90 bp | TCTCTCCTACCTTCTGGATTCCGCCTTCCTGTGGATGGGCTAGGCAGGGTAAGGCTCAAAGGCACTGCCTaGAGGCTGCATGCCTGGTAC | + |
|
Preference number: 4 (lower is better) Translates to: SLLPSGFRLPVDGLGRVRLKGTA*RLHAWY Trigger: GTACCAGGCATGCAGCCTCCAGGCAGTGCCTTTGAG...CCTTACCCTGCCTAGCCCATCCACAGGAAGGCGGAATCCAGAAGGTAGGAGAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000205714.2 ENSMUST00000205933.2 |
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| CDS-3UTR TCA 90 bp | CTAAACAGCAGCCAGGCGGACAGTGCGCTCTCTCCTACCTTCTGGATTCCGCCTACAGGAGCAAGATGCTaGCAACCAGGAAAGGGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: LNSSQADSALSPTFWIPPTGARC*QPGKGR Trigger: TCTCCCCTTTCCTGGTTGTCAGCATCTTGCTCCTGT...AGGCGGAATCCAGAAGGTAGGAGAGAGCGCACTGTCCGCCTGGCTGCTGTTTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000205714.2 ENSMUST00000205933.2 |
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| CDS-3UTR CCA 90 bp | AACAGCAGCCAGGCGGACAGTGCGCTCTCTCCTACCTTCTGGATTCCGCCTTCCCCTGCTCCAGCTCCCTaGCTTTCATCTGCATATAGT | + |
|
Preference number: 4 (lower is better) Translates to: NSSQADSALSPTFWIPPSPAPAP*LSSAYS Trigger: ACTATATGCAGATGAAAGCCAGGGAGCTGGAGCAGG...GGAAGGCGGAATCCAGAAGGTAGGAGAGAGCGCACTGTCCGCCTGGCTGCTGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000205714.2 ENSMUST00000205933.2 |
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| CDS-3UTR GCA 90 bp | CCATTCTTTGCCTCAGGAAAGCAACCAGTAATAGCCTGGAGAGCAACCAGAGAGGCACTGCCTGGAGGCTaGATGCCTGGTACAGGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: PFFASGKQPVIAWRATREALPGG*MPGTGA Trigger: TGCTCCTGTACCAGGCATGCAGCCTCCAGGCAGTGC...CTCTCTGGTTGCTCTCCAGGCTATTACTGGTTGCTTTCCTGAGGCAAAGAATGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR GCA 90 bp | GAAGCTCTACTAGGAAGCCAGATGACTGCCCTTGCTCTCTGCCATCTTCCTGAGATAGTCCTGCACCAGTaGAGCCAGCAGGCGAACTTC | + |
|
Preference number: 4 (lower is better) Translates to: EALLGSQMTALALCHLPEIVLHQ*SQQANF Trigger: GAAGTTCGCCTGCTGGCTGCACTGGTGCAGGACTAT...CTCAGGAAGATGGCAGAGAGCAAGGGCAGTCATCTGGCTTCCTAGTAGAGCTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032907.9 |
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| CDS-3UTR CCA 90 bp | CTGGGTGATTCTCTTTTAGCCTGTGGGACTTTCTCCTCACCCACTGGGGATTTCCTCAAAGGCACTGCCTaGAGGCTGCATGCCTGGTAC | + |
|
Preference number: 4 (lower is better) Translates to: LGDSLLACGTFSSPTGDFLKGTA*RLHAWY Trigger: GTACCAGGCATGCAGCCTCCAGGCAGTGCCTTTGAG...GAAATCCCCAGTGGGTGAGGAGAAAGTCCCACAGGCTAAAAGAGAATCACCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR CCA 90 bp | TCTCTCCTACCTTCTGGATTCCGCCTTCCTGTGGATGGGCTAGGCAGGGTAAGGCCTGCTCCAGCTCCCTaGCTTTCATCTGCATATAGT | + |
|
Preference number: 4 (lower is better) Translates to: SLLPSGFRLPVDGLGRVRPAPAP*LSSAYS Trigger: ACTATATGCAGATGAAAGCCAGGGAGCTGGAGCAGG...CCTTACCCTGCCTAGCCCATCCACAGGAAGGCGGAATCCAGAAGGTAGGAGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000205714.2 ENSMUST00000205933.2 |
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| CDS-3UTR GCA 90 bp | ACCATTCTTTGCCTCAGGAAAGCAACCAGTAATAGCCTGGAGAGCAACCAGAGAGCACTGCCTGGAGGCTaGATGCCTGGTACAGGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: TILCLRKATSNSLESNQRALPGG*MPGTGA Trigger: TGCTCCTGTACCAGGCATGCAGCCTCCAGGCAGTGC...TCTCTGGTTGCTCTCCAGGCTATTACTGGTTGCTTTCCTGAGGCAAAGAATGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR GCA 90 bp | TGGGACTTTCTCCTCACCCACTGGGGATTTCAGATACCATTCTTTGCCTCAGGAATAGTCCTGCACCAGTaGAGCCAGCAGGCGAACTTC | + |
|
Preference number: 4 (lower is better) Translates to: WDFLLTHWGFQIPFFASGIVLHQ*SQQANF Trigger: GAAGTTCGCCTGCTGGCTGCACTGGTGCAGGACTAT...TCCTGAGGCAAAGAATGGTATCTGAAATCCCCAGTGGGTGAGGAGAAAGTCCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR GCA 90 bp | CCTGTGGGACTTTCTCCTCACCCACTGGGGATTTCAGATACCATTCTTTGCCTCTGTACGTGCCCAGCATaGAGGTACTCAGATTCCCAC | + |
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Preference number: 4 (lower is better) Translates to: PVGLSPHPLGISDTILCLCTCPA*RYSDSH Trigger: GTGGGAATCTGAGTACCTGCATGCTGGGCACGTACA...GAGGCAAAGAATGGTATCTGAAATCCCCAGTGGGTGAGGAGAAAGTCCCACAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR GCA 90 bp | CTGGGTGATTCTCTTTTAGCCTGTGGGACTTTCTCCTCACCCACTGGGGATTTCGGTCTTGTGTGTACGTaGCCAGCATGCAGGTACTCA | + |
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Preference number: 4 (lower is better) Translates to: LGDSLLACGTFSSPTGDFGLVCT*PACRYS Trigger: TGAGTACCTGCATGCTGGGCACGTACACACAAGACC...GAAATCCCCAGTGGGTGAGGAGAAAGTCCCACAGGCTAAAAGAGAATCACCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR TCA 90 bp | CCATTCTTTGCCTCAGGAAAGCAACCAGTAATAGCCTGGAGAGCAACCAGAGAGACAGGAGCAAGATGCTaGCAACCAGGAAAGGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: PFFASGKQPVIAWRATRETGARC*QPGKGR Trigger: TCTCCCCTTTCCTGGTTGTCAGCATCTTGCTCCTGT...CTCTCTGGTTGCTCTCCAGGCTATTACTGGTTGCTTTCCTGAGGCAAAGAATGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR TCA 90 bp | CTGGGTGATTCTCTTTTAGCCTGTGGGACTTTCTCCTCACCCACTGGGGATTTCTGCTTCAACCCCAATTaGAGTTTGGGGGAAGGTGTG | + |
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Preference number: 4 (lower is better) Translates to: LGDSLLACGTFSSPTGDFCFNPN*SLGEGV Trigger: CACACCTTCCCCCAAACTTCAATTGGGGTTGAAGCA...GAAATCCCCAGTGGGTGAGGAGAAAGTCCCACAGGCTAAAAGAGAATCACCCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR GCA 90 bp | GTGGGACTTTCTCCTCACCCACTGGGGATTTCAGATACCATTCTTTGCCTCAGGCCACATCCCTTTTCTTaGCAGGTGCTTCAACCCCAA | + |
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Preference number: 4 (lower is better) Translates to: VGLSPHPLGISDTILCLRPHPFS*QVLQPQ Trigger: TTGGGGTTGAAGCACCTGGCAAGAAAAGGGATGTGG...CCTGAGGCAAAGAATGGTATCTGAAATCCCCAGTGGGTGAGGAGAAAGTCCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR CCA 90 bp | CTAGGAAGCCAGATGACTGCCCTTGCTCTCTGCCATCTTCCTGAGTGTGCCCTTTTGCCAAAATGGGATTaGTGGTTTGTCTCCAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: LGSQMTALALCHLPECALLPKWD*WFVSKS Trigger: GGACTTGGAGACAAACCACCAATCCCATTTTGGCAA...AAGGGCACACTCAGGAAGATGGCAGAGAGCAAGGGCAGTCATCTGGCTTCCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032907.9 |
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| CDS-3UTR TCA 90 bp | GTGGGACTTTCTCCTCACCCACTGGGGATTTCAGATACCATTCTTTGCCTCAGGAGGTGTGAAACTTGTTaGGGTCTTGTGTGTACGTGC | + |
|
Preference number: 4 (lower is better) Translates to: VGLSPHPLGISDTILCLRRCETC*GLVCTC Trigger: GCACGTACACACAAGACCTCAACAAGTTTCACACCT...CCTGAGGCAAAGAATGGTATCTGAAATCCCCAGTGGGTGAGGAGAAAGTCCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR TCA 90 bp | CTGGGTGATTCTCTTTTAGCCTGTGGGACTTTCTCCTCACCCACTGGGGATTTCGTTTGGGGGAAGGTGTaGAACTTGTTGAGGTCTTGT | + |
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Preference number: 4 (lower is better) Translates to: LGDSLLACGTFSSPTGDFVWGKV*NLLRSC Trigger: ACAAGACCTCAACAAGTTTCACACCTTCCCCCAAAC...GAAATCCCCAGTGGGTGAGGAGAAAGTCCCACAGGCTAAAAGAGAATCACCCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR TCA 90 bp | GCAGAGTCATCAACATCAACAGGATGGTTTATGGGGACCATATTTGCTACCAGACTTCACCACACCTCCTaGTCTGCTCAGCAGACCTGC | + |
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Preference number: 4 (lower is better) Translates to: AESSTSTGWFMGTIFATRLHHTS*SAQQTC Trigger: GCAGGTCTGCTGAGCAGATCAGGAGGTGTGGTGAAG...TCTGGTAGCAAATATGGTCCCCATAAACCATCCTGTTGATGTTGATGACTCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032906.11 |
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| CDS-3UTR GCA 90 bp | ATCAACATCAACAGGATGGTTTATGGGGACCATATTTGCTACCAGATAAGCCAGGCACTGCCTGGAGGCTaGATGCCTGGTACAGGAGCA | + |
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Preference number: 4 (lower is better) Translates to: ININRMVYGDHICYQISQALPGG*MPGTGA Trigger: TGCTCCTGTACCAGGCATGCAGCCTCCAGGCAGTGC...CTGGCTTATCTGGTAGCAAATATGGTCCCCATAAACCATCCTGTTGATGTTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032906.11 |
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| CDS-3UTR GCA 90 bp | TGGGACTTTCTCCTCACCCACTGGGGATTTCAGATACCATTCTTTGCCTCAGGACCACATCCCTTTTCTTaGCAGGTGCTTCAACCCCAA | + |
|
Preference number: 4 (lower is better) Translates to: WDFLLTHWGFQIPFFASGPHPFS*QVLQPQ Trigger: TTGGGGTTGAAGCACCTGGCAAGAAAAGGGATGTGG...TCCTGAGGCAAAGAATGGTATCTGAAATCCCCAGTGGGTGAGGAGAAAGTCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR CCA 90 bp | GTGGGACTTTCTCCTCACCCACTGGGGATTTCAGATACCATTCTTTGCCTCAGGTTGTCTCCAAGTCCTTaGCCACATCCCTTTTCTTGC | + |
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Preference number: 4 (lower is better) Translates to: VGLSPHPLGISDTILCLRLSPSP*PHPFSC Trigger: GCAAGAAAAGGGATGTGGCCAAGGACTTGGAGACAA...CCTGAGGCAAAGAATGGTATCTGAAATCCCCAGTGGGTGAGGAGAAAGTCCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR TCA 90 bp | TCTTTTAGCCTGTGGGACTTTCTCCTCACCCACTGGGGATTTCAGATACCATTCTGCTTCAACCCCAATTaGAGTTTGGGGGAAGGTGTG | + |
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Preference number: 4 (lower is better) Translates to: SFSLWDFLLTHWGFQIPFCFNPN*SLGEGV Trigger: CACACCTTCCCCCAAACTTCAATTGGGGTTGAAGCA...GAATGGTATCTGAAATCCCCAGTGGGTGAGGAGAAAGTCCCACAGGCTAAAAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR GCA 90 bp | TTTAGCCTGTGGGACTTTCTCCTCACCCACTGGGGATTTCAGATACCATTCTTTGGTCTTGTGTGTACGTaGCCAGCATGCAGGTACTCA | + |
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Preference number: 4 (lower is better) Translates to: FSLWDFLLTHWGFQIPFFGLVCT*PACRYS Trigger: TGAGTACCTGCATGCTGGGCACGTACACACAAGACC...AAAGAATGGTATCTGAAATCCCCAGTGGGTGAGGAGAAAGTCCCACAGGCTAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR CCA 90 bp | TTAGCCTGTGGGACTTTCTCCTCACCCACTGGGGATTTCAGATACCATTCTTTGCCTGCTCCAGCTCCCTaGCTTTCATCTGCATATAGT | + |
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Preference number: 4 (lower is better) Translates to: LACGTFSSPTGDFRYHSLPAPAP*LSSAYS Trigger: ACTATATGCAGATGAAAGCCAGGGAGCTGGAGCAGG...CAAAGAATGGTATCTGAAATCCCCAGTGGGTGAGGAGAAAGTCCCACAGGCTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR CCA 90 bp | CCATTCTTTGCCTCAGGAAAGCAACCAGTAATAGCCTGGAGAGCAACCAGAGAGTTGTCTCCAAGTCCTTaGCCACATCCCTTTTCTTGC | + |
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Preference number: 4 (lower is better) Translates to: PFFASGKQPVIAWRATRELSPSP*PHPFSC Trigger: GCAAGAAAAGGGATGTGGCCAAGGACTTGGAGACAA...CTCTCTGGTTGCTCTCCAGGCTATTACTGGTTGCTTTCCTGAGGCAAAGAATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR CCA 90 bp | GTGGGACTTTCTCCTCACCCACTGGGGATTTCAGATACCATTCTTTGCCTCAGGCCAAAATGGGATTGGTaGTTTGTCTCCAAGTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: VGLSPHPLGISDTILCLRPKWDW*FVSKSL Trigger: CAAGGACTTGGAGACAAACCACCAATCCCATTTTGG...CCTGAGGCAAAGAATGGTATCTGAAATCCCCAGTGGGTGAGGAGAAAGTCCCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR CCA 90 bp | GCCTGTGGGACTTTCTCCTCACCCACTGGGGATTTCAGATACCATTCTTTGCCTTTGCCAAAATGGGATTaGTGGTTTGTCTCCAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: ACGTFSSPTGDFRYHSLPLPKWD*WFVSKS Trigger: GGACTTGGAGACAAACCACCAATCCCATTTTGGCAA...AGGCAAAGAATGGTATCTGAAATCCCCAGTGGGTGAGGAGAAAGTCCCACAGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR TCA 90 bp | TCTTTTAGCCTGTGGGACTTTCTCCTCACCCACTGGGGATTTCAGATACCATTCAGGTGTGAAACTTGTTaGGGTCTTGTGTGTACGTGC | + |
|
Preference number: 4 (lower is better) Translates to: SFSLWDFLLTHWGFQIPFRCETC*GLVCTC Trigger: GCACGTACACACAAGACCTCAACAAGTTTCACACCT...GAATGGTATCTGAAATCCCCAGTGGGTGAGGAGAAAGTCCCACAGGCTAAAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR TCA 90 bp | ACCATTCTTTGCCTCAGGAAAGCAACCAGTAATAGCCTGGAGAGCAACCAGAGAGTTTGGGGGAAGGTGTaGAACTTGTTGAGGTCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: TILCLRKATSNSLESNQRVWGKV*NLLRSC Trigger: ACAAGACCTCAACAAGTTTCACACCTTCCCCCAAAC...TCTCTGGTTGCTCTCCAGGCTATTACTGGTTGCTTTCCTGAGGCAAAGAATGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR CCA 90 bp | GGATACAGAGTCACATACAACACGATGCACAATAGGCAACTTATTCTGCACTTACTCAAAGGCACTGCCTaGAGGCTGCATGCCTGGTAC | + |
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Preference number: 4 (lower is better) Translates to: GYRVTYNTMHNRQLILHLLKGTA*RLHAWY Trigger: GTACCAGGCATGCAGCCTCCAGGCAGTGCCTTTGAG...TAAGTGCAGAATAAGTTGCCTATTGTGCATCGTGTTGTATGTGACTCTGTATCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032906.11 |
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| CDS-3UTR CCA 90 bp | AGTTTTATTTCCCAAACAACCAACACTTCCAGAAGCAAGACTAGAAGCTCTACTCTCAAAGGCACTGCCTaGAGGCTGCATGCCTGGTAC | + |
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Preference number: 4 (lower is better) Translates to: SFISQTTNTSRSKTRSSTLKGTA*RLHAWY Trigger: GTACCAGGCATGCAGCCTCCAGGCAGTGCCTTTGAG...AGTAGAGCTTCTAGTCTTGCTTCTGGAAGTGTTGGTTGTTTGGGAAATAAAACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032907.9 |
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| 3UTR CAA 72 bp | TCCCCAGAAGAGCAAGAGGCAGTGTTTCATATCCCCTaGAGGTTTAGCAGAGTCATCAACATCAACAGGATG | + |
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Preference number: 4 (lower is better) Translates to: SPEEQEAVFHIP*RFSRVININRM Trigger: CATCCTGTTGATGTTGATGACTCTGCTAAACCTCAAGGGGATATGAAACACTGCCTCTTGCTCTTCTGGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032906.11 |
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| CDS-3UTR TCA 90 bp | CTTATTCTGCACTTAGCTTTAGCTCCTGTCAAAGGGAGAAGGGTTTTTCAATACACAGGAGCAAGATGCTaGCAACCAGGAAAGGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: LILHLALAPVKGRRVFQYTGARC*QPGKGR Trigger: TCTCCCCTTTCCTGGTTGTCAGCATCTTGCTCCTGT...GTATTGAAAAACCCTTCTCCCTTTGACAGGAGCTAAAGCTAAGTGCAGAATAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032906.11 |
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| CDS-3UTR CCA 90 bp | TTTAAGCATATGGTTCCATTGAGTCACAACATTACCATGTGTCCCCAGAAGAGCCCTGCTCCAGCTCCCTaGCTTTCATCTGCATATAGT | + |
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Preference number: 4 (lower is better) Translates to: FKHMVPLSHNITMCPQKSPAPAP*LSSAYS Trigger: ACTATATGCAGATGAAAGCCAGGGAGCTGGAGCAGG...GCTCTTCTGGGGACACATGGTAATGTTGTGACTCAATGGAACCATATGCTTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032906.11 |
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| CDS-3UTR CCA 90 bp | TTTAGCCTGTGGGACTTTCTCCTCACCCACTGGGGATTTCAGATACCATTCTTTCCAAAATGGGATTGGTaGTTTGTCTCCAAGTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: FSLWDFLLTHWGFQIPFFPKWDW*FVSKSL Trigger: CAAGGACTTGGAGACAAACCACCAATCCCATTTTGG...AAAGAATGGTATCTGAAATCCCCAGTGGGTGAGGAGAAAGTCCCACAGGCTAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR GCA 90 bp | TTTATTGGATACAGAGTCACATACAACACGATGCACAATAGGCAACTTATTCTGATAGTCCTGCACCAGTaGAGCCAGCAGGCGAACTTC | + |
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Preference number: 4 (lower is better) Translates to: FIGYRVTYNTMHNRQLILIVLHQ*SQQANF Trigger: GAAGTTCGCCTGCTGGCTGCACTGGTGCAGGACTAT...CAGAATAAGTTGCCTATTGTGCATCGTGTTGTATGTGACTCTGTATCCAATAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032906.11 |
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| CDS-3UTR TCA 90 bp | AGAGAGGAACTACATGCATCAAGTTATAGGAAGAAAGCAAGAAGGAAACTAGAAACAGGAGCAAGATGCTaGCAACCAGGAAAGGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: REELHASSYRKKARRKLETGARC*QPGKGR Trigger: TCTCCCCTTTCCTGGTTGTCAGCATCTTGCTCCTGT...TTCTAGTTTCCTTCTTGCTTTCTTCCTATAACTTGATGCATGTAGTTCCTCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR GCA 90 bp | AGAGAGGAACTACATGCATCAAGTTATAGGAAGAAAGCAAGAAGGAAACTAGAATGTACGTGCCCAGCATaGAGGTACTCAGATTCCCAC | + |
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Preference number: 4 (lower is better) Translates to: REELHASSYRKKARRKLECTCPA*RYSDSH Trigger: GTGGGAATCTGAGTACCTGCATGCTGGGCACGTACA...TTCTAGTTTCCTTCTTGCTTTCTTCCTATAACTTGATGCATGTAGTTCCTCTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR CCA 90 bp | AGTTTTATTTCCCAAACAACCAACACTTCCAGAAGCAAGACTAGAAGCTCTACTCCTGCTCCAGCTCCCTaGCTTTCATCTGCATATAGT | + |
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Preference number: 4 (lower is better) Translates to: SFISQTTNTSRSKTRSSTPAPAP*LSSAYS Trigger: ACTATATGCAGATGAAAGCCAGGGAGCTGGAGCAGG...AGTAGAGCTTCTAGTCTTGCTTCTGGAAGTGTTGGTTGTTTGGGAAATAAAACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032907.9 |
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| CDS-3UTR CCA 90 bp | CTTATTCTGCACTTAGCTTTAGCTCCTGTCAAAGGGAGAAGGGTTTTTCAATACCTTCAGAGCCCACATTaGTGGGAACAAAGTTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: LILHLALAPVKGRRVFQYLQSPH*WEQSCP Trigger: AGGACAACTTTGTTCCCACCAATGTGGGCTCTGAAG...GTATTGAAAAACCCTTCTCCCTTTGACAGGAGCTAAAGCTAAGTGCAGAATAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032906.11 |
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| 3UTR CAA 72 bp | CATCAACATCAACAGGATGGTTTATGGGGACCATATTaGCTACCAGATAAGCCAGAACCATGCTGTCATGTT | + |
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Preference number: 4 (lower is better) Translates to: HQHQQDGLWGPY*LPDKPEPCCHV Trigger: AACATGACAGCATGGTTCTGGCTTATCTGGTAGCAAATATGGTCCCCATAAACCATCCTGTTGATGTTGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032906.11 |
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| CDS-3UTR CAA 90 bp | GCCATCTTCCTGAGTGTGCCCTTGCTCTCTGCCATCTTCCTGGGTGATTCTCTTAATGGGATTGGTGGTTaGTCTCCAAGTCCTTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: AIFLSVPLLSAIFLGDSLNGIGG*SPSPWP Trigger: TGGCCAAGGACTTGGAGACAAACCACCAATCCCATT...AAGAGAATCACCCAGGAAGATGGCAGAGAGCAAGGGCACACTCAGGAAGATGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032907.9 |
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| CDS-3UTR CAA 90 bp | CTAGGAAGCCAGATGACTGCCCTTGCTCTCTGCCATCTTCCTGAGTGTGCCCTTGTTGCCAAAATGGGATaGGTGGTTTGTCTCCAAGTC | + |
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Preference number: 5 (lower is better) Translates to: LGSQMTALALCHLPECALVAKMG*VVCLQV Trigger: GACTTGGAGACAAACCACCAATCCCATTTTGGCAAC...AAGGGCACACTCAGGAAGATGGCAGAGAGCAAGGGCAGTCATCTGGCTTCCTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032907.9 |
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| CDS TCA 90 bp | TTCTTGCCAGGTGCTTCAACCCCAATTGAAGTTTGGGGGAAGGTGTaGAACTTGTTGAGGTCTTGTGTGTACGTGCCCAGCATGCAGGTA | + |
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Preference number: 5 (lower is better) Translates to: FLPGASTPIEVWGKV*NLLRSCVYVPSMQV Trigger: TACCTGCATGCTGGGCACGTACACACAAGACCTCAACAAGTTTCACACCTTCCCCCAAACTTCAATTGGGGTTGAAGCACCTGGCAAGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR CAA 90 bp | ACCATTCTTTGCCTCAGGAAAGCAACCAGTAATAGCCTGGAGAGCAACCAGAGAAATGGGATTGGTGGTTaGTCTCCAAGTCCTTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: TILCLRKATSNSLESNQRNGIGG*SPSPWP Trigger: TGGCCAAGGACTTGGAGACAAACCACCAATCCCATT...TCTCTGGTTGCTCTCCAGGCTATTACTGGTTGCTTTCCTGAGGCAAAGAATGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR CAA 90 bp | TTAGCCTGTGGGACTTTCTCCTCACCCACTGGGGATTTCAGATACCATTCTTTGAAACTTGTTGAGGTCTaGTGTGTACGTGCCCAGCAT | + |
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Preference number: 5 (lower is better) Translates to: LACGTFSSPTGDFRYHSLKLVEV*CVRAQH Trigger: ATGCTGGGCACGTACACACAAGACCTCAACAAGTTT...CAAAGAATGGTATCTGAAATCCCCAGTGGGTGAGGAGAAAGTCCCACAGGCTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS-3UTR CAA 90 bp | GTCACATACAACACGATGCACAATAGGCAACTTATTCTGCACTTAGCTTTAGCTTTGGTGGGAACAAAGTaGTCCTTCACCACACCTCCT | + |
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Preference number: 5 (lower is better) Translates to: VTYNTMHNRQLILHLALALVGTK*SFTTPP Trigger: AGGAGGTGTGGTGAAGGACAACTTTGTTCCCACCAA...AGCTAAAGCTAAGTGCAGAATAAGTTGCCTATTGTGCATCGTGTTGTATGTGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032906.11 |
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| CDS-3UTR CAA 90 bp | AGAGAGGAACTACATGCATCAAGTTATAGGAAGAAAGCAAGAAGGAAACTAGAAAAACTTGTTGAGGTCTaGTGTGTACGTGCCCAGCAT | + |
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Preference number: 5 (lower is better) Translates to: REELHASSYRKKARRKLEKLVEV*CVRAQH Trigger: ATGCTGGGCACGTACACACAAGACCTCAACAAGTTT...TTCTAGTTTCCTTCTTGCTTTCTTCCTATAACTTGATGCATGTAGTTCCTCTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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| CDS CCA 72 bp | GGGCTGCTTTCCAAGATTGACCTCAAAGGCACTGCCTaGAGGCTGCATGCCTGGTACAGGAGCAAGATGCTG | + |
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Preference number: 6 (lower is better) Translates to: GLLSKIDLKGTA*RLHAWYRSKML Trigger: CAGCATCTTGCTCCTGTACCAGGCATGCAGCCTCCAGGCAGTGCCTTTGAGGTCAATCTTGGAAAGCAGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000032906.11 ENSMUST00000032907.9 ENSMUST00000205714.2 ENSMUST00000205933.2 ENSMUST00000206156.2 ENSMUST00000206853.2 |
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| CDS TCA 72 bp | CCCCAATTGAAGTTTGGGGGAAGGTGTGAAACTTGTTaGGGTCTTGTGTGTACGTGCCCAGCATGCAGGTAC | + |
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Preference number: 6 (lower is better) Translates to: PQLKFGGRCETC*GLVCTCPACRY Trigger: GTACCTGCATGCTGGGCACGTACACACAAGACCTCAACAAGTTTCACACCTTCCCCCAAACTTCAATTGGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032907.9 ENSMUST00000206853.2 |
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