Pregenerated sensors for CAGE1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044566Ensembl transcript IDs: ENSMUST00000074969.11, ENSMUST00000089840.5, ENSMUST00000110233.8, ENSMUST00000131066.2
Found 92 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGTGGCAGATACAGATCCAAAGACCAGGCCATCATAACCTGTAAGTaGCTCTGGTTTTCTGTTGGGGCCCTCATCACAGCGGCTCTGATG | + |
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Preference number: 1 (lower is better) Translates to: SGRYRSKDQAIITCK*LWFSVGALITAALM Trigger: CATCAGAGCCGCTGTGATGAGGGCCCCAACAGAAAACCAGAGGCACTTACAGGTTATGATGGCCTGGTCTTTGGATCTGTATCTGCCACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| 3UTR GCA 90 bp | GTGGATTCCAGTCACTTAACTCAGGTTCTCAAACTTGATGGCAAGTaGTTTTACCCACATAGTCATCTTGCCAGTCCCCAAACAACCTTG | + |
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Preference number: 1 (lower is better) Translates to: VDSSHLTQVLKLDGK*FYPHSHLASPQTTL Trigger: CAAGGTTGTTTGGGGACTGGCAAGATGACTATGTGGGTAAAAGCACTTGCCATCAAGTTTGAGAACCTGAGTTAAGTGACTGGAATCCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| 3UTR-3UTR CCA 90 bp | AATCCAAGCAGACAGAGGACTAAAGCAGGAAGATTACAACAAATCGGAAGCCAGCCTCTGGTTTTCTGTTaGGGCCCTCATCACAGCGGC | + |
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Preference number: 2 (lower is better) Translates to: NPSRQRTKAGRLQQIGSQPLVFC*GPHHSG Trigger: GCCGCTGTGATGAGGGCCCCAACAGAAAACCAGAGG...CTGGCTTCCGATTTGTTGTAATCTTCCTGCTTTAGTCCTCTGTCTGCTTGGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| 3UTR-3UTR CCA 90 bp | ACCTGTAATCCAAGCAGACAGAGGACTAAAGCAGGAAGATTACAACAAATCGGAACCTGTAAGTGCCTCTaGTTTTCTGTTGGGGCCCTC | + |
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Preference number: 2 (lower is better) Translates to: TCNPSRQRTKAGRLQQIGTCKCL*FSVGAL Trigger: GAGGGCCCCAACAGAAAACCAGAGGCACTTACAGGT...TCCGATTTGTTGTAATCTTCCTGCTTTAGTCCTCTGTCTGCTTGGATTACAGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| 3UTR-3UTR TCA 90 bp | CCACATAGTCATCTTGCCAGTCCCCAAACAACCTTGTTTCTCATACAACTTGGGTGCTCTGCTCCAGAATaGCTACTGAAAGCACCAAAA | + |
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Preference number: 2 (lower is better) Translates to: PHSHLASPQTTLFLIQLGCSAPE*LLKAPK Trigger: TTTTGGTGCTTTCAGTAGTCATTCTGGAGCAGAGCA...CCCAAGTTGTATGAGAAACAAGGTTGTTTGGGGACTGGCAAGATGACTATGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| 3UTR-3UTR GCA 90 bp | CAGAGGACTAAAGCAGGAAGATTACAACAAATCGGAAGCCAGCTTAGGTTAAATCTCCAGCACAGGCTTTaGTTTGTAAGGAAGAGAGCA | + |
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Preference number: 2 (lower is better) Translates to: QRTKAGRLQQIGSQLRLNLQHRL*FVRKRA Trigger: TGCTCTCTTCCTTACAAAGCAAAGCCTGTGCTGGAG...ATTTAACCTAAGCTGGCTTCCGATTTGTTGTAATCTTCCTGCTTTAGTCCTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| 3UTR-3UTR GCA 90 bp | CTCAGGTTCTCAAACTTGATGGCAAGTGCTTTTACCCACATAGTCATCTTGCCAATCATAACCTGTAAGTaGCTCTGGTTTTCTGTTGGG | + |
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Preference number: 2 (lower is better) Translates to: LRFSNLMASAFTHIVILPIITCK*LWFSVG Trigger: CCCAACAGAAAACCAGAGGCACTTACAGGTTATGAT...TGGCAAGATGACTATGTGGGTAAAAGCACTTGCCATCAAGTTTGAGAACCTGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| 3UTR CAA 90 bp | TTAATCGTCACCTCTACCAAAGTCATGACAAGAAGCCGGGAATTATaGTTCTTTAAGGCAAGCACTCAGCAACCTGTAGAAATGTCCCTA | + |
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Preference number: 2 (lower is better) Translates to: LIVTSTKVMTRSREL*FFKASTQQPVEMSL Trigger: TAGGGACATTTCTACAGGTTGCTGAGTGCTTGCCTTAAAGAACAATAATTCCCGGCTTCTTGTCATGACTTTGGTAGAGGTGACGATTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| 3UTR CAA 90 bp | GCTCCAGCACAGGCTTTGCTTTGTAAGGAAGAGAGCAATTTTCTTTaGTTGATTGCTAAGGCAGATTTGGAACCACACTTCAAAAATCCT | + |
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Preference number: 2 (lower is better) Translates to: APAQALLCKEESNFL*LIAKADLEPHFKNP Trigger: AGGATTTTTGAAGTGTGGTTCCAAATCTGCCTTAGCAATCAACAAAAGAAAATTGCTCTCTTCCTTACAAAGCAAAGCCTGTGCTGGAGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| 3UTR CCA 72 bp | TCCAAAGACCAGGCCATCATAACCTGTAAGTGCCTCTaGTTTTCTGTTGGGGCCCTCATCACAGCGGCTCTG | + |
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Preference number: 3 (lower is better) Translates to: SKDQAIITCKCL*FSVGALITAAL Trigger: CAGAGCCGCTGTGATGAGGGCCCCAACAGAAAACCAGAGGCACTTACAGGTTATGATGGCCTGGTCTTTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| 3UTR GCA 72 bp | TACAGATCCAAAGACCAGGCCATCATAACCTGTAAGTaGCTCTGGTTTTCTGTTGGGGCCCTCATCACAGCG | + |
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Preference number: 3 (lower is better) Translates to: YRSKDQAIITCK*LWFSVGALITA Trigger: CGCTGTGATGAGGGCCCCAACAGAAAACCAGAGGCACTTACAGGTTATGATGGCCTGGTCTTTGGATCTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| 3UTR-3UTR CAA 90 bp | CTCAGGTTCTCAAACTTGATGGCAAGTGCTTTTACCCACATAGTCATCTTGCCAGGTGGATTTCTCAGTTaGAGGCCAGCCTGGTCTACA | + |
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Preference number: 3 (lower is better) Translates to: LRFSNLMASAFTHIVILPGGFLS*RPAWST Trigger: TGTAGACCAGGCTGGCCTCAAACTGAGAAATCCACC...TGGCAAGATGACTATGTGGGTAAAAGCACTTGCCATCAAGTTTGAGAACCTGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| 3UTR-3UTR CAA 90 bp | CTCAGGTTCTCAAACTTGATGGCAAGTGCTTTTACCCACATAGTCATCTTGCCAGTTTCTCCAACTGTGTaGACAGAAGGTTCTAATGTT | + |
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Preference number: 3 (lower is better) Translates to: LRFSNLMASAFTHIVILPVSPTV*TEGSNV Trigger: AACATTAGAACCTTCTGTCAACACAGTTGGAGAAAC...TGGCAAGATGACTATGTGGGTAAAAGCACTTGCCATCAAGTTTGAGAACCTGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| 3UTR CCA 72 bp | CTAAGGCAGATTTGGAACCACACTTCAAAAATCCTTTaGCAGCCAGCTAAAATAAACCAAACATGCCCTACA | + |
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Preference number: 3 (lower is better) Translates to: LRQIWNHTSKIL*QPAKINQTCPT Trigger: TGTAGGGCATGTTTGGTTTATTTTAGCTGGCTGCCAAAGGATTTTTGAAGTGTGGTTCCAAATCTGCCTTAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| 3UTR-3UTR CAA 90 bp | ACCTGTAATCCAAGCAGACAGAGGACTAAAGCAGGAAGATTACAACAAATCGGAGAGAGCAATTTTCTTTaGTTGATTGCTAAGGCAGAT | + |
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Preference number: 3 (lower is better) Translates to: TCNPSRQRTKAGRLQQIGESNFL*LIAKAD Trigger: ATCTGCCTTAGCAATCAACAAAAGAAAATTGCTCTC...TCCGATTTGTTGTAATCTTCCTGCTTTAGTCCTCTGTCTGCTTGGATTACAGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR CCA 90 bp | CAGCAACCTGTAGAAATGTCCCTAAGCCTGCAGTGTGTTTCCTTTCTGTTTCCCCTAGGGGTGCAAGCTTaGGCCTCCCTCTTCGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: QQPVEMSLSLQCVSFLFPLGVQA*ASLFAA Trigger: GGCTGCGAAGAGGGAGGCCCAAGCTTGCACCCCTAG...GGGAAACAGAAAGGAAACACACTGCAGGCTTAGGGACATTTCTACAGGTTGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR TCA 90 bp | AATCCAAGCAGACAGAGGACTAAAGCAGGAAGATTACAACAAATCGGAAGCCAGCGAATGGCGCCTCTGTaGGCGGCTGTGCCTCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: NPSRQRTKAGRLQQIGSQRMAPL*AAVPLL Trigger: GAGGAGAGGCACAGCCGCTCACAGAGGCGCCATTCG...CTGGCTTCCGATTTGTTGTAATCTTCCTGCTTTAGTCCTCTGTCTGCTTGGATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR TCA 90 bp | TCAAAAATCCTTTGGCAGCCAGCTAAAATAAACCAAACATGCCCTACAATTCCCAGCTGGAGACCACGGTaGGGTAATGGCGAGGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: SKILWQPAKINQTCPTIPSWRPR*GNGEAV Trigger: GACAGCCTCGCCATTACCTCACCGTGGTCTCCAGCT...GGGAATTGTAGGGCATGTTTGGTTTATTTTAGCTGGCTGCCAAAGGATTTTTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR GCA 90 bp | ACCTGTAATCCAAGCAGACAGAGGACTAAAGCAGGAAGATTACAACAAATCGGATTCAGCTCTTCGACCTaGCGCTGGAGCGCCATGGTT | + |
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Preference number: 4 (lower is better) Translates to: TCNPSRQRTKAGRLQQIGFSSST*RWSAMV Trigger: AACCATGGCGCTCCAGCGGCAGGTCGAAGAGCTGAA...TCCGATTTGTTGTAATCTTCCTGCTTTAGTCCTCTGTCTGCTTGGATTACAGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR CCA 90 bp | CAGAGGACTAAAGCAGGAAGATTACAACAAATCGGAAGCCAGCTTAGGTTAAATCCAGGGCAGAACTGGTaGCCTTCTCCAGCTCCCCTT | + |
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Preference number: 4 (lower is better) Translates to: QRTKAGRLQQIGSQLRLNPGQNW*PSPAPL Trigger: AAGGGGAGCTGGAGAAGGCCACCAGTTCTGCCCTGG...ATTTAACCTAAGCTGGCTTCCGATTTGTTGTAATCTTCCTGCTTTAGTCCTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR CCA 90 bp | CAGCAACCTGTAGAAATGTCCCTAAGCCTGCAGTGTGTTTCCTTTCTGTTTCCCGCATCATTGTATACCTaGCTTGGCAACTCTGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: QQPVEMSLSLQCVSFLFPASLYT*LGNSGF Trigger: GAAGCCAGAGTTGCCAAGCCAGGTATACAATGATGC...GGGAAACAGAAAGGAAACACACTGCAGGCTTAGGGACATTTCTACAGGTTGCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR TCA 90 bp | TCAGCAACCTGTAGAAATGTCCCTAAGCCTGCAGTGTGTTTCCTTTCTGTTTCCAGCAAGCTTTTCACTTaGGCGACCAGCTTCTCAACT | + |
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Preference number: 4 (lower is better) Translates to: SATCRNVPKPAVCFLSVSSKLFT*ATSFST Trigger: AGTTGAGAAGCTGGTCGCTCAAGTGAAAAGCTTGCT...GGAAACAGAAAGGAAACACACTGCAGGCTTAGGGACATTTCTACAGGTTGCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR TCA 90 bp | CCACATAGTCATCTTGCCAGTCCCCAAACAACCTTGTTTCTCATACAACTTGGGCTCCAGCTGCTCCTTTaGCTGAGTAATCTCAAAGCT | + |
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Preference number: 4 (lower is better) Translates to: PHSHLASPQTTLFLIQLGLQLLL*LSNLKA Trigger: AGCTTTGAGATTACTCAGTCAAAGGAGCAGCTGGAG...CCCAAGTTGTATGAGAAACAAGGTTGTTTGGGGACTGGCAAGATGACTATGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR TCA 90 bp | TCAGCAACCTGTAGAAATGTCCCTAAGCCTGCAGTGTGTTTCCTTTCTGTTTCCGTGACTTCTTCCTGGTaGCTAACTGATAGCTCAGAA | + |
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Preference number: 4 (lower is better) Translates to: SATCRNVPKPAVCFLSVSVTSSW*LTDSSE Trigger: TTCTGAGCTATCAGTTAGTCACCAGGAAGAAGTCAC...GGAAACAGAAAGGAAACACACTGCAGGCTTAGGGACATTTCTACAGGTTGCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR TCA 90 bp | TCAGCAACCTGTAGAAATGTCCCTAAGCCTGCAGTGTGTTTCCTTTCTGTTTCCGCTTCCTGCAGATCCTaGAGTTTCTTGTTGATGTCA | + |
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Preference number: 4 (lower is better) Translates to: SATCRNVPKPAVCFLSVSASCRS*SFLLMS Trigger: TGACATCAACAAGAAACTTCAGGATCTGCAGGAAGC...GGAAACAGAAAGGAAACACACTGCAGGCTTAGGGACATTTCTACAGGTTGCTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR TCA 90 bp | CAGCAACCTGTAGAAATGTCCCTAAGCCTGCAGTGTGTTTCCTTTCTGTTTCCCCTCTGGAATTCCTCCTaGAAAGACAAGAACTCTTGT | + |
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Preference number: 4 (lower is better) Translates to: QQPVEMSLSLQCVSFLFPLWNSS*KDKNSC Trigger: ACAAGAGTTCTTGTCTTTTCAGGAGGAATTCCAGAG...GGGAAACAGAAAGGAAACACACTGCAGGCTTAGGGACATTTCTACAGGTTGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR TCA 90 bp | CAGCAACCTGTAGAAATGTCCCTAAGCCTGCAGTGTGTTTCCTTTCTGTTTCCCATTCTGTACTTCTTTTaGAGAAACTTCAGGCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: QQPVEMSLSLQCVSFLFPILYFF*RNFRLL Trigger: GAGGAGCCTGAAGTTTCTTCAAAAGAAGTACAGAAT...GGGAAACAGAAAGGAAACACACTGCAGGCTTAGGGACATTTCTACAGGTTGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR TCA 90 bp | ATTAATCGTCACCTCTACCAAAGTCATGACAAGAAGCCGGGAATTATTGTTCTTTCTATCTCCAGGCACTaGCTGGCCGATCTGTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: INRHLYQSHDKKPGIIVLSISRH*LADLFF Trigger: GAAGAACAGATCGGCCAGTCAGTGCCTGGAGATAGA...AAGAACAATAATTCCCGGCTTCTTGTCATGACTTTGGTAGAGGTGACGATTAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR GCA 90 bp | AATCCAAGCAGACAGAGGACTAAAGCAGGAAGATTACAACAAATCGGAAGCCAGGATCTGGCTTTTCACTaGCATCTGCTGCATCATTGT | + |
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Preference number: 4 (lower is better) Translates to: NPSRQRTKAGRLQQIGSQDLAFH*HLLHHC Trigger: ACAATGATGCAGCAGATGGCAGTGAAAAGCCAGATC...CTGGCTTCCGATTTGTTGTAATCTTCCTGCTTTAGTCCTCTGTCTGCTTGGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR GCA 90 bp | AATCCAAGCAGACAGAGGACTAAAGCAGGAAGATTACAACAAATCGGAAGCCAGGCCGATCTGTTCTTCTaGTGGATCTCAGCAATATAC | + |
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Preference number: 4 (lower is better) Translates to: NPSRQRTKAGRLQQIGSQADLFF*WISAIY Trigger: GTATATTGCTGAGATCCAGCAGAAGAACAGATCGGC...CTGGCTTCCGATTTGTTGTAATCTTCCTGCTTTAGTCCTCTGTCTGCTTGGATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR CCA 90 bp | CTCAGGTTCTCAAACTTGATGGCAAGTGCTTTTACCCACATAGTCATCTTGCCATTCCTTAAATGGATCTaGCTTTTCACTGCCATCTGC | + |
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Preference number: 4 (lower is better) Translates to: LRFSNLMASAFTHIVILPFLKWI*LFTAIC Trigger: GCAGATGGCAGTGAAAAGCCAGATCCATTTAAGGAA...TGGCAAGATGACTATGTGGGTAAAAGCACTTGCCATCAAGTTTGAGAACCTGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR CCA 90 bp | TCAGCAACCTGTAGAAATGTCCCTAAGCCTGCAGTGTGTTTCCTTTCTGTTTCCTCTCCTTGTCTTTCTTaGATTCCTGAAGGTGCTTTT | + |
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Preference number: 4 (lower is better) Translates to: SATCRNVPKPAVCFLSVSSPCLS*IPEGAF Trigger: AAAAGCACCTTCAGGAATCCAAGAAAGACAAGGAGA...GGAAACAGAAAGGAAACACACTGCAGGCTTAGGGACATTTCTACAGGTTGCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR CCA 90 bp | CAGAGGACTAAAGCAGGAAGATTACAACAAATCGGAAGCCAGCTTAGGTTAAATTTTTTCACCTGGAGCTaGAGGCTCTCCTTGTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: QRTKAGRLQQIGSQLRLNFFTWS*RLSLSF Trigger: GAAAGACAAGGAGAGCCTCCAGCTCCAGGTGAAAAA...ATTTAACCTAAGCTGGCTTCCGATTTGTTGTAATCTTCCTGCTTTAGTCCTCTG 43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR CCA 90 bp | GTTTCTCCAACTGTGTTGACAGAAGGTTCTAATGTTGTTTTCAGTGCTTTACAATCTCCAGGCACTGACTaGCCGATCTGTTCTTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: VSPTVLTEGSNVVFSALQSPGTD*PICSSA Trigger: AGCAGAAGAACAGATCGGCCAGTCAGTGCCTGGAGA...TTGTAAAGCACTGAAAACAACATTAGAACCTTCTGTCAACACAGTTGGAGAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR GCA 90 bp | TCAGCAACCTGTAGAAATGTCCCTAAGCCTGCAGTGTGTTTCCTTTCTGTTTCCAACTTCAGGCTCCTCTaGTTTATAAATAGCTCTCAA | + |
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Preference number: 4 (lower is better) Translates to: SATCRNVPKPAVCFLSVSNFRLL*FINSSQ Trigger: TTGAGAGCTATTTATAAAGCAGAGGAGCCTGAAGTT...GGAAACAGAAAGGAAACACACTGCAGGCTTAGGGACATTTCTACAGGTTGCTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR GCA 90 bp | CTCAGGTTCTCAAACTTGATGGCAAGTGCTTTTACCCACATAGTCATCTTGCCAGCTCCTCGTCTTTCTTaGTTAAGGTCTTTTCTATCT | + |
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Preference number: 4 (lower is better) Translates to: LRFSNLMASAFTHIVILPAPRLS*LRSFLS Trigger: AGATAGAAAAGACCTTAAGCAAGAAAGACGAGGAGC...TGGCAAGATGACTATGTGGGTAAAAGCACTTGCCATCAAGTTTGAGAACCTGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR GCA 90 bp | CAGAGGACTAAAGCAGGAAGATTACAACAAATCGGAAGCCAGCTTAGGTTAAATTTAGAATTCAGCGTCTaGATGGATACCTGGGTGATG | + |
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Preference number: 4 (lower is better) Translates to: QRTKAGRLQQIGSQLRLNLEFSV*MDTWVM Trigger: CATCACCCAGGTATCCATGCAGACGCTGAATTCTAA...ATTTAACCTAAGCTGGCTTCCGATTTGTTGTAATCTTCCTGCTTTAGTCCTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR CCA 90 bp | AATCCAAGCAGACAGAGGACTAAAGCAGGAAGATTACAACAAATCGGAAGCCAGACTTTCTTCCTTAAATaGATCTGGCTTTTCACTGCC | + |
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Preference number: 4 (lower is better) Translates to: NPSRQRTKAGRLQQIGSQTFFLK*IWLFTA Trigger: GGCAGTGAAAAGCCAGATCCATTTAAGGAAGAAAGT...CTGGCTTCCGATTTGTTGTAATCTTCCTGCTTTAGTCCTCTGTCTGCTTGGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR TCA 90 bp | ATTAATCGTCACCTCTACCAAAGTCATGACAAGAAGCCGGGAATTATTGTTCTTTTACCATGGAGGTCTTaGATCTGCAGTTCCTGCTTT | + |
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Preference number: 4 (lower is better) Translates to: INRHLYQSHDKKPGIIVLLPWRS*ICSSCF Trigger: AAAGCAGGAACTGCAGATTCAAGACCTCCATGGTAA...AAGAACAATAATTCCCGGCTTCTTGTCATGACTTTGGTAGAGGTGACGATTAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR GCA 90 bp | TCAGCAACCTGTAGAAATGTCCCTAAGCCTGCAGTGTGTTTCCTTTCTGTTTCCCCTTATTTTCGGAAATaGTACTTTCCACTGAACTTT | + |
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Preference number: 4 (lower is better) Translates to: SATCRNVPKPAVCFLSVSPYFRK*YFPLNF Trigger: AAAGTTCAGTGGAAAGTAGCATTTCCGAAAATAAGG...GGAAACAGAAAGGAAACACACTGCAGGCTTAGGGACATTTCTACAGGTTGCTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS-3UTR CCA 90 bp | GTTTCTCCAACTGTGTTGACAGAAGGTTCTAATGTTGTTTTCAGTGCTTTACAACTGGCTTGGCAACTCTaGCTTCTCCGAGTAAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: VSPTVLTEGSNVVFSALQLAWQL*LLRVRK Trigger: TTTTCTTACTCGGAGAAGCCAGAGTTGCCAAGCCAG...TTGTAAAGCACTGAAAACAACATTAGAACCTTCTGTCAACACAGTTGGAGAAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS TCA 90 bp | CTCCTGGGTGATGTCCGGCTCCACCGCTTCCTCCAGCTGCTCCTTTaGCTGAGTAATCTCAAAGCTAGGGGTGCAAGCTTGGGCCTCCCT | + |
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Preference number: 5 (lower is better) Translates to: LLGDVRLHRFLQLLL*LSNLKARGASLGLP Trigger: AGGGAGGCCCAAGCTTGCACCCCTAGCTTTGAGATTACTCAGTCAAAGGAGCAGCTGGAGGAAGCGGTGGAGCCGGACATCACCCAGGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 |
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| CDS TCA 90 bp | TGGGTGATGTCCGGCTCCACCGCTTCCTCCAGCTGCTCCTTTGACTaGGTAATCTCAAAGCTAGGGGTGCAAGCTTGGGCCTCCCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: WVMSGSTASSSCSFD*VISKLGVQAWASLF Trigger: GAAGAGGGAGGCCCAAGCTTGCACCCCTAGCTTTGAGATTACTCAGTCAAAGGAGCAGCTGGAGGAAGCGGTGGAGCCGGACATCACCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 |
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| CDS TCA 90 bp | TACCTGGGTGATGTCCGGCTCCACCGCTTCCTCCAGCTGCTCCTTTaGCTGAGTAATCTCAAAGCTAGGGGTGCAAGCTTGGGCCTCCCT | + |
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Preference number: 5 (lower is better) Translates to: YLGDVRLHRFLQLLL*LSNLKARGASLGLP Trigger: AGGGAGGCCCAAGCTTGCACCCCTAGCTTTGAGATTACTCAGTCAAAGGAGCAGCTGGAGGAAGCGGTGGAGCCGGACATCACCCAGGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
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| CDS GCA 90 bp | TCCAGGGCAGAACTGGTGGCCTTCTCCAGCTCCCCTTTGTGGCGCTaGAGCCGCTGGAGCTCCTCGTCTTTCTTGCTTAAGGTCTTTTCT | + |
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Preference number: 5 (lower is better) Translates to: SRAELVAFSSSPLWR*SRWSSSSFLLKVFS Trigger: AGAAAAGACCTTAAGCAAGAAAGACGAGGAGCTCCAGCGGCTGCAGCGCCACAAAGGGGAGCTGGAGAAGGCCACCAGTTCTGCCCTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 |
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| CDS TCA 90 bp | TCTCTTGGCAAAGCTCAGCATCAGGCGTGGCAAGGTCCTGACACGTaGGAAGTCCTATTCTCAGGGCCAAAAGGCTGTGAATTCCAGAGG | + |
|
Preference number: 5 (lower is better) Translates to: SLGKAQHQAWQGPDT*EVLFSGPKGCEFQR Trigger: CCTCTGGAATTCACAGCCTTTTGGCCCTGAGAATAGGACTTCTCACGTGTCAGGACCTTGCCACGCCTGATGCTGAGCTTTGCCAAGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 |
||
| CDS GCA 90 bp | GACATCAAGTTCCTCATTCAGACTGTGGTATTTATCCAGTTTGACTaGCAGCAACACAGGCGCATCTCTGGCACTCTTGACCTCGTCTGC | + |
|
Preference number: 5 (lower is better) Translates to: DIKFLIQTVVFIQFD*QQHRRISGTLDLVC Trigger: GCAGACGAGGTCAAGAGTGCCAGAGATGCGCCTGTGTTGCTGGCAGTCAAACTGGATAAATACCACAGTCTGAATGAGGAACTTGATGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 |
||
| CDS CCA 90 bp | TCACATTCTTTGTTTCACTCTGAAGCAGGTCTGAGGAGGAGAAGCTaGCTTCCATACAGAAGGGCGAGTCTGAGTAGGAGAAGTCTTGAG | + |
|
Preference number: 5 (lower is better) Translates to: SHSLFHSEAGLRRRS*LPYRRASLSRRSLE Trigger: CTCAAGACTTCTCCTACTCAGACTCGCCCTTCTGTATGGAAGCCAGCTTCTCCTCCTCAGACCTGCTTCAGAGTGAAACAAAGAATGTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 ENSMUST00000131066.2 |
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| CDS TCA 90 bp | AGCTCCTCGTCTTTCTTGCTTAAGGTCTTTTCTATCTCCAGGCACTaGCTGGCCGATCTGTTCTTCTGCTGGATCTCAGCAATATACCTT | + |
|
Preference number: 5 (lower is better) Translates to: SSSSFLLKVFSISRH*LADLFFCWISAIYL Trigger: AAGGTATATTGCTGAGATCCAGCAGAAGAACAGATCGGCCAGTCAGTGCCTGGAGATAGAAAAGACCTTAAGCAAGAAAGACGAGGAGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 |
||
| CDS CCA 90 bp | CCTCGTCTTTCTTGCTTAAGGTCTTTTCTATCTCCAGGCACTGACTaGCCGATCTGTTCTTCTGCTGGATCTCAGCAATATACCTTTCCT | + |
|
Preference number: 5 (lower is better) Translates to: PRLSCLRSFLSPGTD*PICSSAGSQQYTFP Trigger: AGGAAAGGTATATTGCTGAGATCCAGCAGAAGAACAGATCGGCCAGTCAGTGCCTGGAGATAGAAAAGACCTTAAGCAAGAAAGACGAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 |
||
| CDS CCA 90 bp | CCTCCCAGCTTTGTAATCAAGACATCAAGTTCCTCATTCAGACTGTaGTATTTATCCAGTTTGACTGCCAGCAACACAGGCGCATCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: PPSFVIKTSSSSFRL*YLSSLTASNTGASL Trigger: CAGAGATGCGCCTGTGTTGCTGGCAGTCAAACTGGATAAATACCACAGTCTGAATGAGGAACTTGATGTCTTGATTACAAAGCTGGGAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 |
||
| CDS TCA 90 bp | GTAATGGCGAGGCTGTCAACGCCATCTTCTGTGACTTCTTCCTGGTaGCTAACTGATAGCTCAGAAATCTCTCCAGAATTCTGTACTTCT | + |
|
Preference number: 5 (lower is better) Translates to: VMARLSTPSSVTSSW*LTDSSEISPEFCTS Trigger: AGAAGTACAGAATTCTGGAGAGATTTCTGAGCTATCAGTTAGTCACCAGGAAGAAGTCACAGAAGATGGCGTTGACAGCCTCGCCATTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 ENSMUST00000131066.2 |
||
| CDS-3UTR CAA 90 bp | CTCAGGTTCTCAAACTTGATGGCAAGTGCTTTTACCCACATAGTCATCTTGCCAAAAAGACAAGAACTCTaGTTCCCGGATCTCCTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: LRFSNLMASAFTHIVILPKRQEL*FPDLLL Trigger: GAGAAGGAGATCCGGGAACAAGAGTTCTTGTCTTTT...TGGCAAGATGACTATGTGGGTAAAAGCACTTGCCATCAAGTTTGAGAACCTGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
||
| CDS CCA 90 bp | GCAAATGGGTTCAAATTGTCTCAAGGAAGAAAGCCTAGTGTTAGCTaGTTGATTCTGCTCACTCTCTGGGTAATTCCCAAGGTTGATATC | + |
|
Preference number: 5 (lower is better) Translates to: ANGFKLSQGRKPSVS*LILLTLWVIPKVDI Trigger: GATATCAACCTTGGGAATTACCCAGAGAGTGAGCAGAATCAACCAGCTAACACTAGGCTTTCTTCCTTGAGACAATTTGAACCCATTTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 ENSMUST00000131066.2 |
||
| CDS-3UTR CAA 90 bp | AATCCAAGCAGACAGAGGACTAAAGCAGGAAGATTACAACAAATCGGAAGCCAGTTTATCCAGAAAGCTTaGAGGCTGACTGATATTGAG | + |
|
Preference number: 5 (lower is better) Translates to: NPSRQRTKAGRLQQIGSQFIQKA*RLTDIE Trigger: CTCAATATCAGTCAGCCTCAAAGCTTTCTGGATAAA...CTGGCTTCCGATTTGTTGTAATCTTCCTGCTTTAGTCCTCTGTCTGCTTGGATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
||
| CDS-3UTR CAA 90 bp | TCAGCAACCTGTAGAAATGTCCCTAAGCCTGCAGTGTGTTTCCTTTCTGTTTCCAATTCTGTACTTCTTTaGAAGAAACTTCAGGCTCCT | + |
|
Preference number: 5 (lower is better) Translates to: SATCRNVPKPAVCFLSVSNSVLL*KKLQAP Trigger: AGGAGCCTGAAGTTTCTTCAAAAGAAGTACAGAATT...GGAAACAGAAAGGAAACACACTGCAGGCTTAGGGACATTTCTACAGGTTGCTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
||
| CDS-3UTR CAA 90 bp | CAGAGGACTAAAGCAGGAAGATTACAACAAATCGGAAGCCAGCTTAGGTTAAATAGCTCCTCGTCTTTCTaGCTTAAGGTCTTTTCTATC | + |
|
Preference number: 5 (lower is better) Translates to: QRTKAGRLQQIGSQLRLNSSSSF*LKVFSI Trigger: GATAGAAAAGACCTTAAGCAAGAAAGACGAGGAGCT...ATTTAACCTAAGCTGGCTTCCGATTTGTTGTAATCTTCCTGCTTTAGTCCTCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
||
| CDS TCA 90 bp | TTGACCTCGTCTGCATCAAAATCTGTGATCTCAATAGTGTGGGCTTaGAGTGCCTTTTCACTAGCAATTAACTCTTTAAGAGTCGCAATT | + |
|
Preference number: 5 (lower is better) Translates to: LTSSASKSVISIVWA*SAFSLAINSLRVAI Trigger: AATTGCGACTCTTAAAGAGTTAATTGCTAGTGAAAAGGCACTTCAAGCCCACACTATTGAGATCACAGATTTTGATGCAGACGAGGTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 |
||
| CDS-3UTR CAA 90 bp | TCAAAAATCCTTTGGCAGCCAGCTAAAATAAACCAAACATGCCCTACAATTCCCTCCCTATCAGACGAATaGTCACCATTTTTACAGACA | + |
|
Preference number: 5 (lower is better) Translates to: SKILWQPAKINQTCPTIPSLSDE*SPFLQT Trigger: TGTCTGTAAAAATGGTGACAATTCGTCTGATAGGGA...GGGAATTGTAGGGCATGTTTGGTTTATTTTAGCTGGCTGCCAAAGGATTTTTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000089840.5 |
||
| CDS CCA 72 bp | AGGGCAGAACTGGTGGCCTTCTCCAGCTCCCCTTTGTaGCGCTGCAGCCGCTGGAGCTCCTCGTCTTTCTTG | + |
|
Preference number: 6 (lower is better) Translates to: RAELVAFSSSPL*RCSRWSSSSFL Trigger: CAAGAAAGACGAGGAGCTCCAGCGGCTGCAGCGCCACAAAGGGGAGCTGGAGAAGGCCACCAGTTCTGCCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 |
||
| CDS CCA 72 bp | TCTCCTTCTCCCGCTTCAGCAAGTCCAGGGCAGAACTaGTGGCCTTCTCCAGCTCCCCTTTGTGGCGCTGCA | + |
|
Preference number: 6 (lower is better) Translates to: SPSPASASPGQN*WPSPAPLCGAA Trigger: TGCAGCGCCACAAAGGGGAGCTGGAGAAGGCCACCAGTTCTGCCCTGGACTTGCTGAAGCGGGAGAAGGAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 |
||
| CDS TCA 72 bp | CAGCTGACCTCTCTATCAGGCCTCAGGGAGTTGTCCTaGGGCCCACTTCCCTTGAAGATGCCAGCTGGAGAC | + |
|
Preference number: 6 (lower is better) Translates to: QLTSLSGLRELS*GPLPLKMPAGD Trigger: GTCTCCAGCTGGCATCTTCAAGGGAAGTGGGCCTCAGGACAACTCCCTGAGGCCTGATAGAGAGGTCAGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 ENSMUST00000131066.2 |
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| CDS CCA 72 bp | ATTGAGGCCGACATCTACGACGGCACTTCTCACGAATaGCGCCTCTGTGAGCGGCTGTGCCTCTCCTCTGTA | + |
|
Preference number: 6 (lower is better) Translates to: IEADIYDGTSHE*RLCERLCLSSV Trigger: TACAGAGGAGAGGCACAGCCGCTCACAGAGGCGCCATTCGTGAGAAGTGCCGTCGTAGATGTCGGCCTCAAT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 ENSMUST00000131066.2 |
||
| CDS TCA 72 bp | CATCTACGACGGCACTTCTCACGAATGGCGCCTCTGTaGGCGGCTGTGCCTCTCCTCTGTAGTAGTTTAGAC | + |
|
Preference number: 6 (lower is better) Translates to: HLRRHFSRMAPL*AAVPLLCSSLD Trigger: GTCTAAACTACTACAGAGGAGAGGCACAGCCGCTCACAGAGGCGCCATTCGTGAGAAGTGCCGTCGTAGATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 ENSMUST00000131066.2 |
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| CDS TCA 72 bp | CCATGTCCTCTTCCAGAGGCTCTAAGCCTTCACAGCTaGCCTCTCTATCAGGCCTCAGGGAGTTGTCCTGAG | + |
|
Preference number: 6 (lower is better) Translates to: PCPLPEALSLHS*PLYQASGSCPE Trigger: CTCAGGACAACTCCCTGAGGCCTGATAGAGAGGTCAGCTGTGAAGGCTTAGAGCCTCTGGAAGAGGACATGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 ENSMUST00000131066.2 |
||
| CDS TCA 72 bp | GGAGCGCCATGGTTTGAGCTCTCTCGCTCTCACAGGTaGACAGCAAGCTTTTCACTTGAGCGACCAGCTTCT | + |
|
Preference number: 6 (lower is better) Translates to: GAPWFELSRSHR*TASFSLERPAS Trigger: AGAAGCTGGTCGCTCAAGTGAAAAGCTTGCTGTTCACCTGTGAGAGCGAGAGAGCTCAAACCATGGCGCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 |
||
| CDS CCA 72 bp | TTGTTTCACTCTGAAGCAGGTCTGAGGAGGAGAAGCTaGCTTCCATACAGAAGGGCGAGTCTGAGTAGGAGA | + |
|
Preference number: 6 (lower is better) Translates to: LFHSEAGLRRRS*LPYRRASLSRR Trigger: TCTCCTACTCAGACTCGCCCTTCTGTATGGAAGCCAGCTTCTCCTCCTCAGACCTGCTTCAGAGTGAAACAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 ENSMUST00000131066.2 |
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| CDS CCA 72 bp | TTCACTGCCATCTGCTGCATCATTGTATACCTGGCTTaGCAACTCTGGCTTCTCCGAGTAAGAAAACGCCCC | + |
|
Preference number: 6 (lower is better) Translates to: FTAICCIIVYLA*QLWLLRVRKRP Trigger: GGGGCGTTTTCTTACTCGGAGAAGCCAGAGTTGCCAAGCCAGGTATACAATGATGCAGCAGATGGCAGTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 ENSMUST00000131066.2 |
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| CDS GCA 72 bp | CAACACAGGCGCATCTCTGGCACTCTTGACCTCGTCTaGATCAAAATCTGTGATCTCAATAGTGTGGGCTTG | + |
|
Preference number: 6 (lower is better) Translates to: QHRRISGTLDLV*IKICDLNSVGL Trigger: CAAGCCCACACTATTGAGATCACAGATTTTGATGCAGACGAGGTCAAGAGTGCCAGAGATGCGCCTGTGTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 |
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| CDS CCA 72 bp | TTTTCACCTGGAGCTGGAGGCTCTCCTTGTCTTTCTTaGATTCCTGAAGGTGCTTTTTGGTGTGAGCCGAAG | + |
|
Preference number: 6 (lower is better) Translates to: FSPGAGGSPCLS*IPEGAFWCEPK Trigger: CTTCGGCTCACACCAAAAAGCACCTTCAGGAATCCAAGAAAGACAAGGAGAGCCTCCAGCTCCAGGTGAAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 |
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| CDS CAA 90 bp | GTCCTTCAGTCTTTGCAGCATTATGTCATTAGCTTTCTTACTCTCTaGGCAAAGCTCAGCATCAGGCGTGGCAAGGTCCTGACACGTGAG | + |
|
Preference number: 6 (lower is better) Translates to: VLQSLQHYVISFLTL*AKLSIRRGKVLTRE Trigger: CTCACGTGTCAGGACCTTGCCACGCCTGATGCTGAGCTTTGCCAAGAGAGTAAGAAAGCTAATGACATAATGCTGCAAAGACTGAAGGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 |
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| CDS TCA 72 bp | CCTTTTCACATTCTTTGTTTCACTCTGAAGCAGGTCTaGGGAGGAGAAGCTGGCTTCCATACAGAAGGGCGA | + |
|
Preference number: 6 (lower is better) Translates to: PFHILCFTLKQV*GGEAGFHTEGR Trigger: TCGCCCTTCTGTATGGAAGCCAGCTTCTCCTCCTCAGACCTGCTTCAGAGTGAAACAAAGAATGTGAAAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 ENSMUST00000131066.2 |
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| CDS TCA 72 bp | TTCAGGCTTTCCTTTTCCCGCCTCTGGAATTCCTCCTaGAAAGACAAGAACTCTTGTTCCCGGATCTCCTTC | + |
|
Preference number: 6 (lower is better) Translates to: FRLSFSRLWNSS*KDKNSCSRISF Trigger: GAAGGAGATCCGGGAACAAGAGTTCTTGTCTTTTCAGGAGGAATTCCAGAGGCGGGAAAAGGAAAGCCTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 |
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| CDS TCA 72 bp | CTCTCGCTCTCACAGGTGAACAGCAAGCTTTTCACTTaGGCGACCAGCTTCTCAACTCTCGACTTCAATTTC | + |
|
Preference number: 6 (lower is better) Translates to: LSLSQVNSKLFT*ATSFSTLDFNF Trigger: GAAATTGAAGTCGAGAGTTGAGAAGCTGGTCGCTCAAGTGAAAAGCTTGCTGTTCACCTGTGAGAGCGAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 |
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| CDS TCA 72 bp | CAAGTTCCTCATTCAGACTGTGGTATTTATCCAGTTTaGCTGCCAGCAACACAGGCGCATCTCTGGCACTCT | + |
|
Preference number: 6 (lower is better) Translates to: QVPHSDCGIYPV*LPATQAHLWHS Trigger: AGAGTGCCAGAGATGCGCCTGTGTTGCTGGCAGTCAAACTGGATAAATACCACAGTCTGAATGAGGAACTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 |
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| CDS GCA 72 bp | TTCCTCATTCAGACTGTGGTATTTATCCAGTTTGACTaGCAGCAACACAGGCGCATCTCTGGCACTCTTGAC | + |
|
Preference number: 6 (lower is better) Translates to: FLIQTVVFIQFD*QQHRRISGTLD Trigger: GTCAAGAGTGCCAGAGATGCGCCTGTGTTGCTGGCAGTCAAACTGGATAAATACCACAGTCTGAATGAGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 |
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| CDS CAA 72 bp | TTGACTGCCAGCAACACAGGCGCATCTCTGGCACTCTaGACCTCGTCTGCATCAAAATCTGTGATCTCAATA | + |
|
Preference number: 6 (lower is better) Translates to: LTASNTGASLAL*TSSASKSVISI Trigger: TATTGAGATCACAGATTTTGATGCAGACGAGGTCAAGAGTGCCAGAGATGCGCCTGTGTTGCTGGCAGTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 |
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| CDS TCA 72 bp | TCTTTCTTGCTTAAGGTCTTTTCTATCTCCAGGCACTaGCTGGCCGATCTGTTCTTCTGCTGGATCTCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: SFLLKVFSISRH*LADLFFCWISA Trigger: TGCTGAGATCCAGCAGAAGAACAGATCGGCCAGTCAGTGCCTGGAGATAGAAAAGACCTTAAGCAAGAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 |
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| CDS CCA 72 bp | TCTCCTTGTCTTTCTTGGATTCCTGAAGGTGCTTTTTaGTGTGAGCCGAAGCTTCCTGCAGATCCTGAAGTT | + |
|
Preference number: 6 (lower is better) Translates to: SPCLSWIPEGAF*CEPKLPADPEV Trigger: AACTTCAGGATCTGCAGGAAGCTTCGGCTCACACCAAAAAGCACCTTCAGGAATCCAAGAAAGACAAGGAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 |
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| CDS CCA 72 bp | ATTCCAGAGGCCAGCGGAGAAGTTTTCTTCAGAGGTTaGAGCTCCAGGTTTTCTTTACAAGAAGAGCGATTC | + |
|
Preference number: 6 (lower is better) Translates to: IPEASGEVFFRG*SSRFSLQEERF Trigger: GAATCGCTCTTCTTGTAAAGAAAACCTGGAGCTCCAACCTCTGAAGAAAACTTCTCCGCTGGCCTCTGGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 |
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| CDS CAA 72 bp | TCTTTGCAGCATTATGTCATTAGCTTTCTTACTCTCTaGGCAAAGCTCAGCATCAGGCGTGGCAAGGTCCTG | + |
|
Preference number: 6 (lower is better) Translates to: SLQHYVISFLTL*AKLSIRRGKVL Trigger: CAGGACCTTGCCACGCCTGATGCTGAGCTTTGCCAAGAGAGTAAGAAAGCTAATGACATAATGCTGCAAAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 |
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| CDS TCA 72 bp | AGGCTGTCAACGCCATCTTCTGTGACTTCTTCCTGGTaGCTAACTGATAGCTCAGAAATCTCTCCAGAATTC | + |
|
Preference number: 6 (lower is better) Translates to: RLSTPSSVTSSW*LTDSSEISPEF Trigger: GAATTCTGGAGAGATTTCTGAGCTATCAGTTAGTCACCAGGAAGAAGTCACAGAAGATGGCGTTGACAGCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 ENSMUST00000131066.2 |
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| CDS GCA 72 bp | TTCCTTAAATGGATCTGGCTTTTCACTGCCATCTGCTaGATCATTGTATACCTGGCTTGGCAACTCTGGCTT | + |
|
Preference number: 6 (lower is better) Translates to: FLKWIWLFTAIC*IIVYLAWQLWL Trigger: AAGCCAGAGTTGCCAAGCCAGGTATACAATGATGCAGCAGATGGCAGTGAAAAGCCAGATCCATTTAAGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 ENSMUST00000131066.2 |
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| CDS CCA 72 bp | TCTTGCTTAAGGTCTTTTCTATCTCCAGGCACTGACTaGCCGATCTGTTCTTCTGCTGGATCTCAGCAATAT | + |
|
Preference number: 6 (lower is better) Translates to: SCLRSFLSPGTD*PICSSAGSQQY Trigger: ATATTGCTGAGATCCAGCAGAAGAACAGATCGGCCAGTCAGTGCCTGGAGATAGAAAAGACCTTAAGCAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000074969.11 ENSMUST00000089840.5 ENSMUST00000110233.8 |
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| CDS CAA 72 bp | AATTCCAGAGGCCAGCGGAGAAGTTTTCTTCAGAGGTaGGAGCTCCAGGTTTTCTTTACAAGAAGAGCGATT | + |
|
Preference number: 6 (lower is better) Translates to: NSRGQRRSFLQR*ELQVFFTRRAI Trigger: AATCGCTCTTCTTGTAAAGAAAACCTGGAGCTCCAACCTCTGAAGAAAACTTCTCCGCTGGCCTCTGGAATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 |
||
| CDS CCA 72 bp | TTCAAATTGTCTCAAGGAAGAAAGCCTAGTGTTAGCTaGTTGATTCTGCTCACTCTCTGGGTAATTCCCAAG | + |
|
Preference number: 6 (lower is better) Translates to: FKLSQGRKPSVS*LILLTLWVIPK Trigger: CTTGGGAATTACCCAGAGAGTGAGCAGAATCAACCAGCTAACACTAGGCTTTCTTCCTTGAGACAATTTGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 ENSMUST00000131066.2 |
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| CDS CAA 90 bp | ATTCTTTATGGTGGCCCTCAAGATGACTTATCAAGGTCAAGGACTTaGGGTGATTATCTAATCTTGGTCTTGGCCTTTTGGCTTTCTCTC | + |
|
Preference number: 6 (lower is better) Translates to: ILYGGPQDDLSRSRT*GDYLILVLAFWLSL Trigger: GAGAGAAAGCCAAAAGGCCAAGACCAAGATTAGATAATCACCCAAAGTCCTTGACCTTGATAAGTCATCTTGAGGGCCACCATAAAGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 |
||
| CDS TCA 72 bp | GTTGATTCTGCTCACTCTCTGGGTAATTCCCAAGGTTaGTATCACCTAACAAACTGCCTTCTGTGCTATAAA | + |
|
Preference number: 6 (lower is better) Translates to: VDSAHSLGNSQG*YHLTNCLLCYK Trigger: TTTATAGCACAGAAGGCAGTTTGTTAGGTGATATCAACCTTGGGAATTACCCAGAGAGTGAGCAGAATCAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 ENSMUST00000131066.2 |
||
| CDS CCA 72 bp | TTTGTAATCAAGACATCAAGTTCCTCATTCAGACTGTaGTATTTATCCAGTTTGACTGCCAGCAACACAGGC | + |
|
Preference number: 6 (lower is better) Translates to: FVIKTSSSSFRL*YLSSLTASNTG Trigger: GCCTGTGTTGCTGGCAGTCAAACTGGATAAATACCACAGTCTGAATGAGGAACTTGATGTCTTGATTACAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 |
||
| CDS TCA 72 bp | TCTGCATCAAAATCTGTGATCTCAATAGTGTGGGCTTaGAGTGCCTTTTCACTAGCAATTAACTCTTTAAGA | + |
|
Preference number: 6 (lower is better) Translates to: SASKSVISIVWA*SAFSLAINSLR Trigger: TCTTAAAGAGTTAATTGCTAGTGAAAAGGCACTTCAAGCCCACACTATTGAGATCACAGATTTTGATGCAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 |
||
| CDS TCA 72 bp | AAGTCTTTGGTCAGCACATTTGATAATTTCTTCATATaGCGTTACCTTATTTATCAGGCTGCCTACGTGTCT | + |
|
Preference number: 6 (lower is better) Translates to: KSLVSTFDNFFI*RYLIYQAAYVS Trigger: AGACACGTAGGCAGCCTGATAAATAAGGTAACGTCATATGAAGAAATTATCAAATGTGCTGACCAAAGACTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 |
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| CDS TCA 72 bp | TCTATTCCTCTCTTCCAAGTGTGCAATCTGAGAATGTaGTATCTCAAGTCTTTGGTCAGCACATTTGATAAT | + |
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Preference number: 6 (lower is better) Translates to: SIPLFQVCNLRM*YLKSLVSTFDN Trigger: ATTATCAAATGTGCTGACCAAAGACTTGAGATATCACATTCTCAGATTGCACACTTGGAAGAGAGGAATAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074969.11 ENSMUST00000110233.8 |
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