Pregenerated sensors for CACNG8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053395Ensembl transcript IDs: ENSMUST00000092351.6, ENSMUST00000182222.8, ENSMUST00000203617.2
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CGAGAATCCCAGAAGAGGGATTGGACAGAGGGATGGAGGGGTGCATaGAATCACACGCCTCCAGCAGTAAAGCACACCCCTCAAGACCTT | + |
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Preference number: 1 (lower is better) Translates to: RESQKRDWTEGWRGA*NHTPPAVKHTPQDL Trigger: AAGGTCTTGAGGGGTGTGCTTTACTGCTGGAGGCGTGTGATTCCATGCACCCCTCCATCCCTCTGTCCAATCCCTCTTCTGGGATTCTCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| 3UTR GCA 90 bp | CCAGTTCCAGAGGCTCTTCTGACCTCAAAGGGCACCAGGCACGCATaGAGTGCACAGTTGACCACGCTGACAAAACATTCACACGCATCA | + |
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Preference number: 1 (lower is better) Translates to: PVPEALLTSKGTRHA*SAQLTTLTKHSHAS Trigger: TGATGCGTGTGAATGTTTTGTCAGCGTGGTCAACTGTGCACTGCATGCGTGCCTGGTGCCCTTTGAGGTCAGAAGAGCCTCTGGAACTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| 3UTR GCA 90 bp | TCCAGAGGCTCTTCTGACCTCAAAGGGCACCAGGCACGCATGCAGTaGACAGTTGACCACGCTGACAAAACATTCACACGCATCATCAAG | + |
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Preference number: 1 (lower is better) Translates to: SRGSSDLKGHQARMQ*TVDHADKTFTRIIK Trigger: CTTGATGATGCGTGTGAATGTTTTGTCAGCGTGGTCAACTGTGCACTGCATGCGTGCCTGGTGCCCTTTGAGGTCAGAAGAGCCTCTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| 3UTR TCA 90 bp | ACCTCCATGTGTGTCAGAGGCCCTGTTCAGGCTTCCACGGGTACTTaGATACATGCAAGTGTGCAAAGCAGAGACCCATACAGATACACA | + |
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Preference number: 1 (lower is better) Translates to: TSMCVRGPVQASTGT*IHASVQSRDPYRYT Trigger: TGTGTATCTGTATGGGTCTCTGCTTTGCACACTTGCATGTATTCAAGTACCCGTGGAAGCCTGAACAGGGCCTCTGACACACATGGAGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| 3UTR-3UTR GCA 90 bp | ATCTGTAACTCCAGTTCCAGAGGCTCTTCTGACCTCAAAGGGCACCAGGCACGCAGAGGGATGGAGGGGTaGATGGAATCACACGCCTCC | + |
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Preference number: 2 (lower is better) Translates to: ICNSSSRGSSDLKGHQARRGMEG*MESHAS Trigger: GGAGGCGTGTGATTCCATGCACCCCTCCATCCCTCT...GCGTGCCTGGTGCCCTTTGAGGTCAGAAGAGCCTCTGGAACTGGAGTTACAGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| 3UTR-3UTR GCA 90 bp | CAACACTTTATTACTACCTCCATGTGTGTCAGAGGCCCTGTTCAGGCTTCCACGCAGGCACGCATGCAGTaGACAGTTGACCACGCTGAC | + |
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Preference number: 2 (lower is better) Translates to: QHFITTSMCVRGPVQASTQARMQ*TVDHAD Trigger: GTCAGCGTGGTCAACTGTGCACTGCATGCGTGCCTG...CGTGGAAGCCTGAACAGGGCCTCTGACACACATGGAGGTAGTAATAAAGTGTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| 3UTR CAA 90 bp | GCTCTTCTGACCTCAAAGGGCACCAGGCACGCATGCAGTGCACAGTaGACCACGCTGACAAAACATTCACACGCATCATCAAGTCCAGTA | + |
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Preference number: 2 (lower is better) Translates to: ALLTSKGTRHACSAQ*TTLTKHSHASSSPV Trigger: TACTGGACTTGATGATGCGTGTGAATGTTTTGTCAGCGTGGTCAACTGTGCACTGCATGCGTGCCTGGTGCCCTTTGAGGTCAGAAGAGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| 3UTR-3UTR TCA 90 bp | AGGCTTCCACGGGTACTTGAATACATGCAAGTGTGCAAAGCAGAGACCCATACATTCCAGAGGCTCTTCTaGCCTCAAAGGGCACCAGGC | + |
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Preference number: 2 (lower is better) Translates to: RLPRVLEYMQVCKAETHTFQRLF*PQRAPG Trigger: GCCTGGTGCCCTTTGAGGTCAGAAGAGCCTCTGGAA...TGTATGGGTCTCTGCTTTGCACACTTGCATGTATTCAAGTACCCGTGGAAGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| 3UTR-3UTR CCA 90 bp | CTGTTCAGGCTTCCACGGGTACTTGAATACATGCAAGTGTGCAAAGCAGAGACCGATTGGACAGAGGGATaGAGGGGTGCATGGAATCAC | + |
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Preference number: 2 (lower is better) Translates to: LFRLPRVLEYMQVCKAETDWTEG*RGAWNH Trigger: GTGATTCCATGCACCCCTCCATCCCTCTGTCCAATC...GGTCTCTGCTTTGCACACTTGCATGTATTCAAGTACCCGTGGAAGCCTGAACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| 3UTR-3UTR CCA 90 bp | CAGCTAACAACACTTTATTACTACCTCCATGTGTGTCAGAGGCCCTGTTCAGGCTCCCAGAAGAGGGATTaGACAGAGGGATGGAGGGGT | + |
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Preference number: 2 (lower is better) Translates to: QLTTLYYYLHVCQRPCSGSQKRD*TEGWRG Trigger: ACCCCTCCATCCCTCTGTCCAATCCCTCTTCTGGGA...GCCTGAACAGGGCCTCTGACACACATGGAGGTAGTAATAAAGTGTTGTTAGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| 3UTR CAA 90 bp | TACCTCCATGTGTGTCAGAGGCCCTGTTCAGGCTTCCACGGGTACTaGAATACATGCAAGTGTGCAAAGCAGAGACCCATACAGATACAC | + |
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Preference number: 2 (lower is better) Translates to: YLHVCQRPCSGFHGY*NTCKCAKQRPIQIH Trigger: GTGTATCTGTATGGGTCTCTGCTTTGCACACTTGCATGTATTCAAGTACCCGTGGAAGCCTGAACAGGGCCTCTGACACACATGGAGGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| 3UTR CCA 72 bp | AAACGAGAATCCCAGAAGAGGGATTGGACAGAGGGATaGAGGGGTGCATGGAATCACACGCCTCCAGCAGTA | + |
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Preference number: 3 (lower is better) Translates to: KRESQKRDWTEG*RGAWNHTPPAV Trigger: TACTGCTGGAGGCGTGTGATTCCATGCACCCCTCCATCCCTCTGTCCAATCCCTCTTCTGGGATTCTCGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| 3UTR TCA 72 bp | TGTGTCAGAGGCCCTGTTCAGGCTTCCACGGGTACTTaGATACATGCAAGTGTGCAAAGCAGAGACCCATAC | + |
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Preference number: 3 (lower is better) Translates to: CVRGPVQASTGT*IHASVQSRDPY Trigger: GTATGGGTCTCTGCTTTGCACACTTGCATGTATTCAAGTACCCGTGGAAGCCTGAACAGGGCCTCTGACACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| 3UTR GCA 72 bp | AGGCCCTGTTCAGGCTTCCACGGGTACTTGAATACATaGAAGTGTGCAAAGCAGAGACCCATACAGATACAC | + |
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Preference number: 3 (lower is better) Translates to: RPCSGFHGYLNT*KCAKQRPIQIH Trigger: GTGTATCTGTATGGGTCTCTGCTTTGCACACTTGCATGTATTCAAGTACCCGTGGAAGCCTGAACAGGGCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| 3UTR GCA 72 bp | TTCAGGCTTCCACGGGTACTTGAATACATGCAAGTGTaGAAAGCAGAGACCCATACAGATACACATATGGTA | + |
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Preference number: 3 (lower is better) Translates to: FRLPRVLEYMQV*KAETHTDTHMV Trigger: TACCATATGTGTATCTGTATGGGTCTCTGCTTTGCACACTTGCATGTATTCAAGTACCCGTGGAAGCCTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| CDS-3UTR CCA 90 bp | CCACCTGGCACACAACCATCTGTAACTCCAGTTCCAGAGGCTCTTCTGACCTCAAGGCTTCAGCGGAGGTaGCCAGCCAGGGCCTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: PPGTQPSVTPVPEALLTSRLQRR*PARAFL Trigger: CAGGAAGGCCCTGGCTGGCCACCTCCGCTGAAGCCT...TGAGGTCAGAAGAGCCTCTGGAACTGGAGTTACAGATGGTTGTGTGCCAGGTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| CDS-3UTR GCA 90 bp | CTGTTCAGGCTTCCACGGGTACTTGAATACATGCAAGTGTGCAAAGCAGAGACCCAGCCAGGGCCTTCCTaGACCCTACCTTCCAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: LFRLPRVLEYMQVCKAETQPGPS*TLPSRQ Trigger: CTGCCTGGAAGGTAGGGTGCAGGAAGGCCCTGGCTG...GGTCTCTGCTTTGCACACTTGCATGTATTCAAGTACCCGTGGAAGCCTGAACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| 3UTR CAA 72 bp | ACCTCAAAGGGCACCAGGCACGCATGCAGTGCACAGTaGACCACGCTGACAAAACATTCACACGCATCATCA | + |
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Preference number: 4 (lower is better) Translates to: TSKGTRHACSAQ*TTLTKHSHASS Trigger: TGATGATGCGTGTGAATGTTTTGTCAGCGTGGTCAACTGTGCACTGCATGCGTGCCTGGTGCCCTTTGAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| 3UTR CAA 72 bp | GTGTGTCAGAGGCCCTGTTCAGGCTTCCACGGGTACTaGAATACATGCAAGTGTGCAAAGCAGAGACCCATA | + |
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Preference number: 4 (lower is better) Translates to: VCQRPCSGFHGY*NTCKCAKQRPI Trigger: TATGGGTCTCTGCTTTGCACACTTGCATGTATTCAAGTACCCGTGGAAGCCTGAACAGGGCCTCTGACACAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| CDS-3UTR TCA 90 bp | ACAGATACACATATGGTAATTCCACCTGGCACACAACCATCTGTAACTCCAGTTAGAGGCCTGAATGTGTaGGGCCCCCAGGGTCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: TDTHMVIPPGTQPSVTPVRGLNV*GPQGPS Trigger: AGAAGGACCCTGGGGGCCTCACACATTCAGGCCTCT...AACTGGAGTTACAGATGGTTGTGTGCCAGGTGGAATTACCATATGTGTATCTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| CDS CCA 90 bp | GGGAGCGGCGGCGGTAGCGGAAGCGGTAACTGGGCAGACGGAGGATaGCCGAGGGGCCGCTCCCGCCACTGCCGCCCGCGCCGCCGCCGG | + |
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Preference number: 5 (lower is better) Translates to: GSGGGSGSGNWADGG*PRGRSRHCRPRRRR Trigger: CCGGCGGCGGCGCGGGCGGCAGTGGCGGGAGCGGCCCCTCGGCCATCCTCCGTCTGCCCAGTTACCGCTTCCGCTACCGCCGCCGCTCCC 80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS CCA 90 bp | GAGACGCATCCCGGGATGGCGACGCCTCGCTGGAGCCTCGGGAGCTaGAGCGGGAGCGGCGGCGGTAGCGGAAGCGGTAACTGGGCAGAC | + |
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Preference number: 5 (lower is better) Translates to: ETHPGMATPRWSLGS*SGSGGGSGSGNWAD Trigger: GTCTGCCCAGTTACCGCTTCCGCTACCGCCGCCGCTCCCGCTCCAGCTCCCGAGGCTCCAGCGAGGCGTCGCCATCCCGGGATGCGTCTC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS TCA 90 bp | GCCACTGCCGCCCGCGCCGCCGCCGGCCTTGAGCAGGTCCGAGCGTaGTTGGCAGTGTGCCTCGCGGCTGCGCTCGATGTAGATGTTGAC | + |
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Preference number: 5 (lower is better) Translates to: ATAARAAAGLEQVRA*LAVCLAAALDVDVD Trigger: GTCAACATCTACATCGAGCGCAGCCGCGAGGCACACTGCCAATCACGCTCGGACCTGCTCAAGGCCGGCGGCGGCGCGGGCGGCAGTGGC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS GCA 90 bp | ACTGTGACCGTGACGCCGGACGCCGCTTCCTTGGGGAAGGCGTTGTaGAGCGTGAGAAAACCCGCCGAGCTCCCGCGGTCCCGCTCCGAG | + |
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Preference number: 5 (lower is better) Translates to: TVTVTPDAASLGKAL*SVRKPAELPRSRSE Trigger: CTCGGAGCGGGACCGCGGGAGCTCGGCGGGTTTTCTCACGCTGCACAACGCCTTCCCCAAGGAAGCGGCGTCCGGCGTCACGGTCACAGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS CCA 90 bp | AGGCCCCCAGGGTCCTTCTTCTCGGAGGAGCCACTGCCCCCACGATaGGGTGGTCCGTCATCACCTGCTGTGAGGTTGGTGGTGTTGCAG | + |
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Preference number: 5 (lower is better) Translates to: RPPGSFFSEEPLPPR*GGPSSPAVRLVVLQ Trigger: CTGCAACACCACCAACCTCACAGCAGGTGATGACGGACCACCCCATCGTGGGGGCAGTGGCTCCTCCGAGAAGAAGGACCCTGGGGGCCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS CCA 90 bp | CCCAGGGTCCTTCTTCTCGGAGGAGCCACTGCCCCCACGATGGGGTaGTCCGTCATCACCTGCTGTGAGGTTGGTGGTGTTGCAGATGAG | + |
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Preference number: 5 (lower is better) Translates to: PRVLLLGGATAPTMG*SVITCCEVGGVADE Trigger: CTCATCTGCAACACCACCAACCTCACAGCAGGTGATGACGGACCACCCCATCGTGGGGGCAGTGGCTCCTCCGAGAAGAAGGACCCTGGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS GCA 90 bp | CTCGGAGGAGCCACTGCCCCCACGATGGGGTGGTCCGTCATCACCTaGTGTGAGGTTGGTGGTGTTGCAGATGAGAGCTCTTGTGTAGAG | + |
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Preference number: 5 (lower is better) Translates to: LGGATAPTMGWSVIT*CEVGGVADESSCVE Trigger: CTCTACACAAGAGCTCTCATCTGCAACACCACCAACCTCACAGCAGGTGATGACGGACCACCCCATCGTGGGGGCAGTGGCTCCTCCGAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS GCA 90 bp | CACCCCGATGATGTTGCTCAAGCCTGCTGCCACGAACAGGATCCCTaGGCCCAGGATGATGTTCCTTTTGGACTTGTAGACGCGGGAGGC | + |
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Preference number: 5 (lower is better) Translates to: HPDDVAQACCHEQDP*AQDDVPFGLVDAGG Trigger: GCCTCCCGCGTCTACAAGTCCAAAAGGAACATCATCCTGGGCGCAGGGATCCTGTTCGTGGCAGCAGGCTTGAGCAACATCATCGGGGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS TCA 90 bp | TGTTGCTCAAGCCTGCTGCCACGAACAGGATCCCTGCGCCCAGGATaGTGTTCCTTTTGGACTTGTAGACGCGGGAGGCAGCTACGCACA | + |
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Preference number: 5 (lower is better) Translates to: CCSSLLPRTGSLRPG*CSFWTCRRGRQLRT Trigger: TGTGCGTAGCTGCCTCCCGCGTCTACAAGTCCAAAAGGAACATCATCCTGGGCGCAGGGATCCTGTTCGTGGCAGCAGGCTTGAGCAACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS-3UTR CAA 90 bp | TTCCACGGGTACTTGAATACATGCAAGTGTGCAAAGCAGAGACCCATACAGATAACACTAGAAGTCGATTaGCTGGAGGCACAGGCTTCA | + |
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Preference number: 5 (lower is better) Translates to: FHGYLNTCKCAKQRPIQITLEVD*LEAQAS Trigger: TGAAGCCTGTGCCTCCAGCAAATCGACTTCTAGTGT...TATCTGTATGGGTCTCTGCTTTGCACACTTGCATGTATTCAAGTACCCGTGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| CDS CAA 90 bp | GCCGAGGGGCCGCTCCCGCCACTGCCGCCCGCGCCGCCGCCGGCCTaGAGCAGGTCCGAGCGTGATTGGCAGTGTGCCTCGCGGCTGCGC | + |
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Preference number: 6 (lower is better) Translates to: AEGPLPPLPPAPPPA*SRSERDWQCASRLR Trigger: GCGCAGCCGCGAGGCACACTGCCAATCACGCTCGGACCTGCTCAAGGCCGGCGGCGGCGCGGGCGGCAGTGGCGGGAGCGGCCCCTCGGC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS CCA 72 bp | TGGAGCGGGAGCGGCGGCGGTAGCGGAAGCGGTAACTaGGCAGACGGAGGATGGCCGAGGGGCCGCTCCCGC | + |
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Preference number: 6 (lower is better) Translates to: WSGSGGGSGSGN*ADGGWPRGRSR Trigger: GCGGGAGCGGCCCCTCGGCCATCCTCCGTCTGCCCAGTTACCGCTTCCGCTACCGCCGCCGCTCCCGCTCCA 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS TCA 72 bp | GCCCGCGCCGCCGCCGGCCTTGAGCAGGTCCGAGCGTaGTTGGCAGTGTGCCTCGCGGCTGCGCTCGATGTA | + |
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Preference number: 6 (lower is better) Translates to: ARAAAGLEQVRA*LAVCLAAALDV Trigger: TACATCGAGCGCAGCCGCGAGGCACACTGCCAATCACGCTCGGACCTGCTCAAGGCCGGCGGCGGCGCGGGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS TCA 72 bp | CGGACGCCGCTTCCTTGGGGAAGGCGTTGTGCAGCGTaGGAAAACCCGCCGAGCTCCCGCGGTCCCGCTCCG | + |
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Preference number: 6 (lower is better) Translates to: RTPLPWGRRCAA*ENPPSSRGPAP Trigger: CGGAGCGGGACCGCGGGAGCTCGGCGGGTTTTCTCACGCTGCACAACGCCTTCCCCAAGGAAGCGGCGTCCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS CAA 90 bp | GCGGGCGGTCCGGTGACTGTGACCGTGACGCCGGACGCCGCTTCCTaGGGGAAGGCGTTGTGCAGCGTGAGAAAACCCGCCGAGCTCCCG | + |
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Preference number: 6 (lower is better) Translates to: AGGPVTVTVTPDAAS*GKALCSVRKPAELP Trigger: CGGGAGCTCGGCGGGTTTTCTCACGCTGCACAACGCCTTCCCCAAGGAAGCGGCGTCCGGCGTCACGGTCACAGTCACCGGACCGCCCGC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS CAA 90 bp | GTGACTGTGACCGTGACGCCGGACGCCGCTTCCTTGGGGAAGGCGTaGTGCAGCGTGAGAAAACCCGCCGAGCTCCCGCGGTCCCGCTCC | + |
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Preference number: 6 (lower is better) Translates to: VTVTVTPDAASLGKA*CSVRKPAELPRSRS Trigger: GGAGCGGGACCGCGGGAGCTCGGCGGGTTTTCTCACGCTGCACAACGCCTTCCCCAAGGAAGCGGCGTCCGGCGTCACGGTCACAGTCAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS GCA 72 bp | GTGACGCCGGACGCCGCTTCCTTGGGGAAGGCGTTGTaGAGCGTGAGAAAACCCGCCGAGCTCCCGCGGTCC | + |
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Preference number: 6 (lower is better) Translates to: VTPDAASLGKAL*SVRKPAELPRS Trigger: GGACCGCGGGAGCTCGGCGGGTTTTCTCACGCTGCACAACGCCTTCCCCAAGGAAGCGGCGTCCGGCGTCAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS CAA 72 bp | ACCGTGACGCCGGACGCCGCTTCCTTGGGGAAGGCGTaGTGCAGCGTGAGAAAACCCGCCGAGCTCCCGCGG | + |
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Preference number: 6 (lower is better) Translates to: TVTPDAASLGKA*CSVRKPAELPR Trigger: CCGCGGGAGCTCGGCGGGTTTTCTCACGCTGCACAACGCCTTCCCCAAGGAAGCGGCGTCCGGCGTCACGGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS CAA 72 bp | CCGGTGACTGTGACCGTGACGCCGGACGCCGCTTCCTaGGGGAAGGCGTTGTGCAGCGTGAGAAAACCCGCC | + |
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Preference number: 6 (lower is better) Translates to: PVTVTVTPDAAS*GKALCSVRKPA Trigger: GGCGGGTTTTCTCACGCTGCACAACGCCTTCCCCAAGGAAGCGGCGTCCGGCGTCACGGTCACAGTCACCGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS CCA 72 bp | GGGTCCTTCTTCTCGGAGGAGCCACTGCCCCCACGATaGGGTGGTCCGTCATCACCTGCTGTGAGGTTGGTG | + |
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Preference number: 6 (lower is better) Translates to: GSFFSEEPLPPR*GGPSSPAVRLV Trigger: CACCAACCTCACAGCAGGTGATGACGGACCACCCCATCGTGGGGGCAGTGGCTCCTCCGAGAAGAAGGACCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS CAA 72 bp | TACACGGGCGTGGTTTTCCTGTTGAGCGTGTTGGTGTaGGACGCCGCGGCCTCTTTGGACAGGGTCCCGGGC | + |
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Preference number: 6 (lower is better) Translates to: YTGVVFLLSVLV*DAAASLDRVPG Trigger: GCCCGGGACCCTGTCCAAAGAGGCCGCGGCGTCCAACACCAACACGCTCAACAGGAAAACCACGCCCGTGTA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS TCA 72 bp | CTTCCAGGCAGCATATCCGCCAGAGGCCTGAATGTGTaGGGCCCCCAGGGTCCTTCTTCTCGGAGGAGCCAC | + |
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Preference number: 6 (lower is better) Translates to: LPGSISARGLNV*GPQGPSSRRSH Trigger: GTGGCTCCTCCGAGAAGAAGGACCCTGGGGGCCTCACACATTCAGGCCTCTGGCGGATATGCTGCCTGGAAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 ENSMUST00000203617.2 |
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| CDS CCA 72 bp | AAGTCGATTTGCTGGAGGCACAGGCTTCAGCGGAGGTaGCCAGCCAGGGCCTTCCTGCACCCTACCTTCCAG | + |
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Preference number: 6 (lower is better) Translates to: KSICWRHRLQRR*PARAFLHPTFQ Trigger: CTGGAAGGTAGGGTGCAGGAAGGCCCTGGCTGGCCACCTCCGCTGAAGCCTGTGCCTCCAGCAAATCGACTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203617.2 |
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| CDS GCA 72 bp | GCCACTGCCCCCACGATGGGGTGGTCCGTCATCACCTaGTGTGAGGTTGGTGGTGTTGCAGATGAGAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: ATAPTMGWSVIT*CEVGGVADESS Trigger: AGAGCTCTCATCTGCAACACCACCAACCTCACAGCAGGTGATGACGGACCACCCCATCGTGGGGGCAGTGGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS CCA 72 bp | CTTCTTCTCGGAGGAGCCACTGCCCCCACGATGGGGTaGTCCGTCATCACCTGCTGTGAGGTTGGTGGTGTT | + |
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Preference number: 6 (lower is better) Translates to: LLLGGATAPTMG*SVITCCEVGGV Trigger: AACACCACCAACCTCACAGCAGGTGATGACGGACCACCCCATCGTGGGGGCAGTGGCTCCTCCGAGAAGAAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS TCA 72 bp | AGCCTGCTGCCACGAACAGGATCCCTGCGCCCAGGATaGTGTTCCTTTTGGACTTGTAGACGCGGGAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: SLLPRTGSLRPG*CSFWTCRRGRQ Trigger: CTGCCTCCCGCGTCTACAAGTCCAAAAGGAACATCATCCTGGGCGCAGGGATCCTGTTCGTGGCAGCAGGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS TCA 72 bp | TTTCAACCCTTCCAGGCAGCATATCCGCCAGAGGCCTaGATGTGTGAGGCCCCCAGGGTCCTTCTTCTCGGA | + |
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Preference number: 6 (lower is better) Translates to: FQPFQAAYPPEA*MCEAPRVLLLG Trigger: TCCGAGAAGAAGGACCCTGGGGGCCTCACACATTCAGGCCTCTGGCGGATATGCTGCCTGGAAGGGTTGAAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS TCA 72 bp | AAAGCCGCGAAGGCGCCGATGGTGGTCAGTAGTACCTaGACGCCCTTTTCACACCACAAACCCCTCTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: KAAKAPMVVSST*TPFSHHKPLSS Trigger: TGAAGAGAGGGGTTTGTGGTGTGAAAAGGGCGTTCAGGTACTACTGACCACCATCGGCGCCTTCGCGGCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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| CDS GCA 72 bp | GATGTTGCTCAAGCCTGCTGCCACGAACAGGATCCCTaGGCCCAGGATGATGTTCCTTTTGGACTTGTAGAC | + |
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Preference number: 6 (lower is better) Translates to: DVAQACCHEQDP*AQDDVPFGLVD Trigger: GTCTACAAGTCCAAAAGGAACATCATCCTGGGCGCAGGGATCCTGTTCGTGGCAGCAGGCTTGAGCAACATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000092351.6 ENSMUST00000182222.8 |
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