RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CACNG4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020723

Ensembl transcript IDs: ENSMUST00000021066.4

Found 131 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GAACATCTGGGCAGGAAACAGTCGATGGGAGGCCAGAGGTCCCAGTaGCCGGAAGAAGCCTCCCTGTGGCCCAGTGCCCAGCGAGGGAGG +
Preference number: 1 (lower is better)
Translates to: EHLGRKQSMGGQRSQ*PEEASLWPSAQRGR
Trigger: CCTCCCTCGCTGGGCACTGGGCCACAGGGAGGCTTCTTCCGGGCACTGGGACCTCTGGCCTCCCATCGACTGTTTCCTGCCCAGATGTTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR GCA 90 bp AGGCCAGAGGTCCCAGTGCCCGGAAGAAGCCTCCCTGTGGCCCAGTaGCCAGCGAGGGAGGATGCGTTTGACATCTGGCATGACTGGTTT +
Preference number: 1 (lower is better)
Translates to: RPEVPVPGRSLPVAQ*PAREDAFDIWHDWF
Trigger: AAACCAGTCATGCCAGATGTCAAACGCATCCTCCCTCGCTGGGCACTGGGCCACAGGGAGGCTTCTTCCGGGCACTGGGACCTCTGGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 90 bp TGGGAGTATGGCTCCGTGCCCCAGCAGGGCCCTCAGGGGACAGAGTaGTTCCTCAGGCCAGTGTGGAAGGACAGAGTCAAAGGCCACATG +
Preference number: 1 (lower is better)
Translates to: WEYGSVPQQGPQGTE*FLRPVWKDRVKGHM
Trigger: CATGTGGCCTTTGACTCTGTCCTTCCACACTGGCCTGAGGAACCACTCTGTCCCCTGAGGGCCCTGCTGGGGCACGGAGCCATACTCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR GCA 90 bp ACATCTGTGTCAGAACACCAGGTTGGAAGTGGGAGTATGGCTCCGTaGCCCAGCAGGGCCCTCAGGGGACAGAGTGGTTCCTCAGGCCAG +
Preference number: 1 (lower is better)
Translates to: TSVSEHQVGSGSMAP*PSRALRGQSGSSGQ
Trigger: CTGGCCTGAGGAACCACTCTGTCCCCTGAGGGCCCTGCTGGGGCACGGAGCCATACTCCCACTTCCAACCTGGTGTTCTGACACAGATGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 90 bp TGTCTCAGCTCACCATCTCATAGGCAACCGGCTGGAGCTAGGATATaGGTTGTCTTCTTCCGGTGGTGGGGCGGGGGCAGGAAAGGACAG +
Preference number: 1 (lower is better)
Translates to: CLSSPSHRQPAGARI*VVFFRWWGGGRKGQ
Trigger: CTGTCCTTTCCTGCCCCCGCCCCACCACCGGAAGAAGACAACCCATATCCTAGCTCCAGCCGGTTGCCTATGAGATGGTGAGCTGAGACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 90 bp AAGCTTGTACATCTGTGTCAGAACACCAGGTTGGAAGTGGGAGTATaGCTCCGTGCCCCAGCAGGGCCCTCAGGGGACAGAGTGGTTCCT +
Preference number: 1 (lower is better)
Translates to: KLVHLCQNTRLEVGV*LRAPAGPSGDRVVP
Trigger: AGGAACCACTCTGTCCCCTGAGGGCCCTGCTGGGGCACGGAGCCATACTCCCACTTCCAACCTGGTGTTCTGACACAGATGTACAAGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR TCA 90 bp GTAGGCAGGGAGAGGGCCTGCAGCAGGGACAGACCACACATGTCTTaGCATTGGCGCTCATTTGCGGCACATGCTTGGACACATACTGAG +
Preference number: 1 (lower is better)
Translates to: VGRERACSRDRPHMS*HWRSFAAHAWTHTE
Trigger: CTCAGTATGTGTCCAAGCATGTGCCGCAAATGAGCGCCAATGTCAAGACATGTGTGGTCTGTCCCTGCTGCAGGCCCTCTCCCTGCCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR GCA 90 bp AGTGGTTCCTCAGGCCAGTGTGGAAGGACAGAGTCAAAGGCCACATaGCCACCATCCCTCAGATCCGTGAAACCCTCTGGACCTCCAAGA +
Preference number: 1 (lower is better)
Translates to: SGSSGQCGRTESKAT*PPSLRSVKPSGPPR
Trigger: TCTTGGAGGTCCAGAGGGTTTCACGGATCTGAGGGATGGTGGGCATGTGGCCTTTGACTCTGTCCTTCCACACTGGCCTGAGGAACCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR TCA 90 bp GTTTCTACCTTATCCCTGATTCCAATCTCCAGACTCCCCTCACTCTaGGCTAGCCCATGGCGTCTTCTGGAGGCCAGGGAGGATCGCACT +
Preference number: 1 (lower is better)
Translates to: VSTLSLIPISRLPSL*ASPWRLLEAREDRT
Trigger: AGTGCGATCCTCCCTGGCCTCCAGAAGACGCCATGGGCTAGCTCAGAGTGAGGGGAGTCTGGAGATTGGAATCAGGGATAAGGTAGAAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR TCA 90 bp AGCCTACCTCGGGAGAAAGTCAGCCTTCTGTTTCTACCTTATCCCTaGTTCCAATCTCCAGACTCCCCTCACTCTGAGCTAGCCCATGGC +
Preference number: 1 (lower is better)
Translates to: SLPREKVSLLFLPYP*FQSPDSPHSELAHG
Trigger: GCCATGGGCTAGCTCAGAGTGAGGGGAGTCTGGAGATTGGAATCAGGGATAAGGTAGAAACAGAAGGCTGACTTTCTCCCGAGGTAGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR TCA 90 bp AGGCCGAAGCACCAGTTAGCCATAGAGCTTTCTCTTCAGAATGGGTaGTATTTACAACCACCAGCTCCACCAGGGGGCCAGACAGAGGCT +
Preference number: 1 (lower is better)
Translates to: RPKHQLAIELSLQNG*YLQPPAPPGGQTEA
Trigger: AGCCTCTGTCTGGCCCCCTGGTGGAGCTGGTGGTTGTAAATATCACCCATTCTGAAGAGAAAGCTCTATGGCTAACTGGTGCTTCGGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 90 bp CTCGAGGCCGAAGCACCAGTTAGCCATAGAGCTTTCTCTTCAGAATaGGTGATATTTACAACCACCAGCTCCACCAGGGGGCCAGACAGA +
Preference number: 1 (lower is better)
Translates to: LEAEAPVSHRAFSSE*VIFTTTSSTRGPDR
Trigger: TCTGTCTGGCCCCCTGGTGGAGCTGGTGGTTGTAAATATCACCCATTCTGAAGAGAAAGCTCTATGGCTAACTGGTGCTTCGGCCTCGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR TCA 90 bp CCAAGAGGCAGGCTGATGCAGCTTCTTGAAAATTCTTGGGCCTCTTaGGAAGTTCCAAAAACCCAGAGGGCAGCAGAACAGCCTACCTCG +
Preference number: 1 (lower is better)
Translates to: PRGRLMQLLENSWAS*EVPKTQRAAEQPTS
Trigger: CGAGGTAGGCTGTTCTGCTGCCCTCTGGGTTTTTGGAACTTCTCAAGAGGCCCAAGAATTTTCAAGAAGCTGCATCAGCCTGCCTCTTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR TCA 90 bp TGTCCTGTACATTCTGAGCTCAGCGGAAACTTCCAGAAGCAGGTATaGAAGCCAGCAGAGCCTCCGAATTTGCCCTGGTTTCCTGATCTC +
Preference number: 1 (lower is better)
Translates to: CPVHSELSGNFQKQV*KPAEPPNLPWFPDL
Trigger: GAGATCAGGAAACCAGGGCAAATTCGGAGGCTCTGCTGGCTTTCATACCTGCTTCTGGAAGTTTCCGCTGAGCTCAGAATGTACAGGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 90 bp GTCAAAGGCCACATGCCCACCATCCCTCAGATCCGTGAAACCCTCTaGACCTCCAAGATTAGTCAGTATGTCCTGTACATTCTGAGCTCA +
Preference number: 1 (lower is better)
Translates to: VKGHMPTIPQIRETL*TSKISQYVLYILSS
Trigger: TGAGCTCAGAATGTACAGGACATACTGACTAATCTTGGAGGTCCAGAGGGTTTCACGGATCTGAGGGATGGTGGGCATGTGGCCTTTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 90 bp CACAGAACACATTCTTGGATTCAGGCAAAGACAGAAAGCCCAGCATaGCACCTTGAGTCAAATGCTCACCGAGTCCTGGTGTGGGCAGAA +
Preference number: 1 (lower is better)
Translates to: HRTHSWIQAKTESPA*HLESNAHRVLVWAE
Trigger: TTCTGCCCACACCAGGACTCGGTGAGCATTTGACTCAAGGTGCCATGCTGGGCTTTCTGTCTTTGCCTGAATCCAAGAATGTGTTCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR GCA 90 bp GGAATCATGGAAACTTCTGGGACCACAGTTGGGATGGTGGTAGCTTaGATGGAAGTTTACCACAGGCTGCTGCTCTATTGCCAGAAGAGA +
Preference number: 1 (lower is better)
Translates to: GIMETSGTTVGMVVA*MEVYHRLLLYCQKR
Trigger: TCTCTTCTGGCAATAGAGCAGCAGCCTGTGGTAAACTTCCATGCAAGCTACCACCATCCCAACTGTGGTCCCAGAAGTTTCCATGATTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR TCA 90 bp ATGACTGGTTTCTTGGTTCCCAAGAGGCAGGCTGATGCAGCTTCTTaGAAATTCTTGGGCCTCTTGAGAAGTTCCAAAAACCCAGAGGGC +
Preference number: 1 (lower is better)
Translates to: MTGFLVPKRQADAAS*KFLGLLRSSKNPEG
Trigger: GCCCTCTGGGTTTTTGGAACTTCTCAAGAGGCCCAAGAATTTTCAAGAAGCTGCATCAGCCTGCCTCTTGGGAACCAAGAAACCAGTCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR TCA 90 bp AAACCCTCTGGACCTCCAAGATTAGTCAGTATGTCCTGTACATTCTaGGCTCAGCGGAAACTTCCAGAAGCAGGTATGAAAGCCAGCAGA +
Preference number: 1 (lower is better)
Translates to: KPSGPPRLVSMSCTF*AQRKLPEAGMKASR
Trigger: TCTGCTGGCTTTCATACCTGCTTCTGGAAGTTTCCGCTGAGCTCAGAATGTACAGGACATACTGACTAATCTTGGAGGTCCAGAGGGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 90 bp GGAGGTGGTGTTGCTCTTTTTCAGGATAAAGAGGTGAGTACAGCTTaGTCTTCTGACGATGTTCTTCAGTATGCCACCCTCATAACCACT +
Preference number: 1 (lower is better)
Translates to: GGGVALFQDKEVSTA*SSDDVLQYATLITT
Trigger: AGTGGTTATGAGGGTGGCATACTGAAGAACATCGTCAGAAGACCAAGCTGTACTCACCTCTTTATCCTGAAAAAGAGCAACACCACCTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 90 bp AGTTTCACTTTCTGGAGAGTTCTTTCGAACCTGGACACACTCATCTaGTTATTTATTTATTTTTCGTCCGCCTTGAGGAAGAGGGGGATT +
Preference number: 1 (lower is better)
Translates to: SFTFWRVLSNLDTLI*LFIYFSSALRKRGI
Trigger: AATCCCCCTCTTCCTCAAGGCGGACGAAAAATAAATAAATAACCAGATGAGTGTGTCCAGGTTCGAAAGAACTCTCCAGAAAGTGAAACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 90 bp TTAGAAAGCACGCGTGTTATAGAAAAGAGGGTGAGTTTCACTTTCTaGAGAGTTCTTTCGAACCTGGACACACTCATCTGGTTATTTATT +
Preference number: 1 (lower is better)
Translates to: LESTRVIEKRVSFTF*RVLSNLDTLIWLFI
Trigger: AATAAATAACCAGATGAGTGTGTCCAGGTTCGAAAGAACTCTCCAGAAAGTGAAACTCACCCTCTTTTCTATAACACGCGTGCTTTCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 90 bp TGGTCTTCTGACGATGTTCTTCAGTATGCCACCCTCATAACCACTTaGAAAATGATGCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT +
Preference number: 1 (lower is better)
Translates to: WSSDDVLQYATLITT*KMMLFLSFFLSFFL
Trigger: AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGCATCATTTTCCAAGTGGTTATGAGGGTGGCATACTGAAGAACATCGTCAGAAGACCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR CCA 90 bp CTCCGTGCCCCAGCAGGGCCCTCAGGGGACAGAGTGGTTCCTCAGGCCAGTGTGGCCCATGGCGTCTTCTaGAGGCCAGGGAGGATCGCA +
Preference number: 2 (lower is better)
Translates to: LRAPAGPSGDRVVPQASVAHGVF*RPGRIA
Trigger: TGCGATCCTCCCTGGCCTCCAGAAGACGCCATGGGC...CACACTGGCCTGAGGAACCACTCTGTCCCCTGAGGGCCCTGCTGGGGCACGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR CCA 90 bp GGAAGTGGGAGTATGGCTCCGTGCCCCAGCAGGGCCCTCAGGGGACAGAGTGGTCCTGATCTCCTGAGGTaGAGAGCAGCAGGCCCCAGG +
Preference number: 2 (lower is better)
Translates to: GSGSMAPCPSRALRGQSGPDLLR*RAAGPR
Trigger: CCTGGGGCCTGCTGCTCTCCACCTCAGGAGATCAGG...ACCACTCTGTCCCCTGAGGGCCCTGCTGGGGCACGGAGCCATACTCCCACTTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR TCA 90 bp GTGAGGCCGGCAGTCAGCAGGAGGAAGGTTGCAAGGGCTGGGGCCACTGAGGCCCATCCCTCAGATCCGTaGAACCCTCTGGACCTCCAA +
Preference number: 2 (lower is better)
Translates to: VRPAVSRRKVARAGATEAHPSDP*NPLDLQ
Trigger: TTGGAGGTCCAGAGGGTTTCACGGATCTGAGGGATG...GGCCTCAGTGGCCCCAGCCCTTGCAACCTTCCTCCTGCTGACTGCCGGCCTCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR CCA 90 bp AGAACACCAGGTTGGAAGTGGGAGTATGGCTCCGTGCCCCAGCAGGGCCCTCAGGCAGGAAACAGTCGATaGGAGGCCAGAGGTCCCAGT +
Preference number: 2 (lower is better)
Translates to: RTPGWKWEYGSVPQQGPQAGNSR*EARGPS
Trigger: ACTGGGACCTCTGGCCTCCCATCGACTGTTTCCTGC...CTGAGGGCCCTGCTGGGGCACGGAGCCATACTCCCACTTCCAACCTGGTGTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR GCA 90 bp TTGTCTCATAGGGAGAGCAAAGCTGGAGACCAAGTTCTCCAGAGTGAGGCCGGCGGCCAGAGGTCCCAGTaGCCGGAAGAAGCCTCCCTG +
Preference number: 2 (lower is better)
Translates to: LSHRESKAGDQVLQSEAGGQRSQ*PEEASL
Trigger: CAGGGAGGCTTCTTCCGGGCACTGGGACCTCTGGCC...GCCGGCCTCACTCTGGAGAACTTGGTCTCCAGCTTTGCTCTCCCTATGAGACAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR GCA 90 bp GGCCGGCAGTCAGCAGGAGGAAGGTTGCAAGGGCTGGGGCCACTGAGGCCTTCTACATTGGCGCTCATTTaGGGCACATGCTTGGACACA +
Preference number: 2 (lower is better)
Translates to: GRQSAGGRLQGLGPLRPSTLALI*GTCLDT
Trigger: TGTGTCCAAGCATGTGCCGCAAATGAGCGCCAATGT...AGAAGGCCTCAGTGGCCCCAGCCCTTGCAACCTTCCTCCTGCTGACTGCCGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR CCA 90 bp GGCCGGCAGTCAGCAGGAGGAAGGTTGCAAGGGCTGGGGCCACTGAGGCCTTCTTTCTGGGACCACAGTTaGGATGGTGGTAGCTTGCAT +
Preference number: 2 (lower is better)
Translates to: GRQSAGGRLQGLGPLRPSFWDHS*DGGSLH
Trigger: ATGCAAGCTACCACCATCCCAACTGTGGTCCCAGAA...AGAAGGCCTCAGTGGCCCCAGCCCTTGCAACCTTCCTCCTGCTGACTGCCGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR CCA 90 bp TACAACCACCAGCTCCACCAGGGGGCCAGACAGAGGCTGAGGGAGACACAGAGGGGACACAGGAACATCTaGGCAGGAAACAGTCGATGG +
Preference number: 2 (lower is better)
Translates to: YNHQLHQGARQRLRETQRGHRNI*AGNSRW
Trigger: CCATCGACTGTTTCCTGCCCAGATGTTCCTGTGTCC...CCTCTGTGTCTCCCTCAGCCTCTGTCTGGCCCCCTGGTGGAGCTGGTGGTTGTA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR CCA 90 bp AGAGCAAAGCTGGAGACCAAGTTCTCCAGAGTGAGGCCGGCAGTCAGCAGGAGGCTCCTTCTTGGTCCCTaGAGTGGGCCTGTGCACTCT +
Preference number: 2 (lower is better)
Translates to: RAKLETKFSRVRPAVSRRLLLGP*SGPVHS
Trigger: AGAGTGCACAGGCCCACTCCAGGGACCAAGAAGGAG...CCTCCTGCTGACTGCCGGCCTCACTCTGGAGAACTTGGTCTCCAGCTTTGCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR TCA 90 bp GGAAGTGGGAGTATGGCTCCGTGCCCCAGCAGGGCCCTCAGGGGACAGAGTGGTTTTCTACCTTATCCCTaGTTCCAATCTCCAGACTCC +
Preference number: 2 (lower is better)
Translates to: GSGSMAPCPSRALRGQSGFLPYP*FQSPDS
Trigger: GGAGTCTGGAGATTGGAATCAGGGATAAGGTAGAAA...ACCACTCTGTCCCCTGAGGGCCCTGCTGGGGCACGGAGCCATACTCCCACTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR GCA 90 bp CCTGTCAGCAGGAAGGTCCAGTTCTACTCCCTTTGTCTCATAGGGAGAGCAAAGGGCAGGGAGAGGGCCTaGAGCAGGGACAGACCACAC +
Preference number: 2 (lower is better)
Translates to: PVSRKVQFYSLCLIGRAKGRERA*SRDRPH
Trigger: GTGTGGTCTGTCCCTGCTGCAGGCCCTCTCCCTGCC...CTTTGCTCTCCCTATGAGACAAAGGGAGTAGAACTGGACCTTCCTGCTGACAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR TCA 90 bp GGCCGGCAGTCAGCAGGAGGAAGGTTGCAAGGGCTGGGGCCACTGAGGCCTTCTAAAGTAAGAAACGACTaGTCTTTAGAAAGCACGCGT +
Preference number: 2 (lower is better)
Translates to: GRQSAGGRLQGLGPLRPSKVRND*SLESTR
Trigger: ACGCGTGCTTTCTAAAGATCAGTCGTTTCTTACTTT...AGAAGGCCTCAGTGGCCCCAGCCCTTGCAACCTTCCTCCTGCTGACTGCCGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR CCA 90 bp CCTGTCAGCAGGAAGGTCCAGTTCTACTCCCTTTGTCTCATAGGGAGAGCAAAGAGCTTAGGCTCATGTTaGGCTCCAGGACACAGGAAC +
Preference number: 2 (lower is better)
Translates to: PVSRKVQFYSLCLIGRAKSLGSC*APGHRN
Trigger: GTTCCTGTGTCCTGGAGCCCAACATGAGCCTAAGCT...CTTTGCTCTCCCTATGAGACAAAGGGAGTAGAACTGGACCTTCCTGCTGACAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR CCA 90 bp CCTGTCAGCAGGAAGGTCCAGTTCTACTCCCTTTGTCTCATAGGGAGAGCAAAGCAGGCAAAGGAGCCTTaGCATGCTCATGTCTCAGCT +
Preference number: 2 (lower is better)
Translates to: PVSRKVQFYSLCLIGRAKQAKEP*HAHVSA
Trigger: AGCTGAGACATGAGCATGCCAAGGCTCCTTTGCCTG...CTTTGCTCTCCCTATGAGACAAAGGGAGTAGAACTGGACCTTCCTGCTGACAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR TCA 90 bp ACAGAAAGCCCAGCATGGCACCTTGAGTCAAATGCTCACCGAGTCCTGGTGTGGAATTCTTGGGCCTCTTaGGAAGTTCCAAAAACCCAG +
Preference number: 2 (lower is better)
Translates to: TESPAWHLESNAHRVLVWNSWAS*EVPKTQ
Trigger: CTGGGTTTTTGGAACTTCTCAAGAGGCCCAAGAATT...CCACACCAGGACTCGGTGAGCATTTGACTCAAGGTGCCATGCTGGGCTTTCTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR TCA 90 bp CCTGTCAGCAGGAAGGTCCAGTTCTACTCCCTTTGTCTCATAGGGAGAGCAAAGTCCCAAGAGGCAGGCTaGTGCAGCTTCTTGAAAATT +
Preference number: 2 (lower is better)
Translates to: PVSRKVQFYSLCLIGRAKSQEAG*CSFLKI
Trigger: AATTTTCAAGAAGCTGCATCAGCCTGCCTCTTGGGA...CTTTGCTCTCCCTATGAGACAAAGGGAGTAGAACTGGACCTTCCTGCTGACAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR CCA 90 bp CCTGTCAGCAGGAAGGTCCAGTTCTACTCCCTTTGTCTCATAGGGAGAGCAAAGACAGAAAGCCCAGCATaGCACCTTGAGTCAAATGCT +
Preference number: 2 (lower is better)
Translates to: PVSRKVQFYSLCLIGRAKTESPA*HLESNA
Trigger: AGCATTTGACTCAAGGTGCCATGCTGGGCTTTCTGT...CTTTGCTCTCCCTATGAGACAAAGGGAGTAGAACTGGACCTTCCTGCTGACAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR GCA 90 bp CTGGTTATTTATTTATTTTTCGTCCGCCTTGAGGAAGAGGGGGATTGGTTGGACGAGTCAAAGGCCACATaGCCACCATCCCTCAGATCC +
Preference number: 2 (lower is better)
Translates to: LVIYLFFVRLEEEGDWLDESKAT*PPSLRS
Trigger: GGATCTGAGGGATGGTGGGCATGTGGCCTTTGACTC...GTCCAACCAATCCCCCTCTTCCTCAAGGCGGACGAAAAATAAATAAATAACCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR CCA 90 bp ACAGAAAGCCCAGCATGGCACCTTGAGTCAAATGCTCACCGAGTCCTGGTGTGGGCTTTCTCTTCAGAATaGGTGATATTTACAACCACC +
Preference number: 2 (lower is better)
Translates to: TESPAWHLESNAHRVLVWAFSSE*VIFTTT
Trigger: GGTGGTTGTAAATATCACCCATTCTGAAGAGAAAGC...CCACACCAGGACTCGGTGAGCATTTGACTCAAGGTGCCATGCTGGGCTTTCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR CCA 90 bp CACCCTCATAACCACTTGGAAAATGATGCTCTTTCTTTCTTTCTTTCTTTCTTTGAAGAAGCCTCCCTGTaGCCCAGTGCCCAGCGAGGG +
Preference number: 2 (lower is better)
Translates to: HPHNHLENDALSFFLSFFEEASL*PSAQRG
Trigger: CCCTCGCTGGGCACTGGGCCACAGGGAGGCTTCTTC...AAAGAAAGAAAGAAAGAAAGAAAGAGCATCATTTTCCAAGTGGTTATGAGGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CAA 90 bp TCTTTCCTCTGTTCACTCTCAGGTTTCCCTTTCAAATCTTTAAGCTaGTACATCTGTGTCAGAACACCAGGTTGGAAGTGGGAGTATGGC +
Preference number: 2 (lower is better)
Translates to: SFLCSLSGFPFKSLS*YICVRTPGWKWEYG
Trigger: GCCATACTCCCACTTCCAACCTGGTGTTCTGACACAGATGTACAAGCTTAAAGATTTGAAAGGGAAACCTGAGAGTGAACAGAGGAAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CAA 90 bp AACCTGGACACACTCATCTGGTTATTTATTTATTTTTCGTCCGCCTaGAGGAAGAGGGGGATTGGTTGGACAAACTGTAGGACACAGAAC +
Preference number: 2 (lower is better)
Translates to: NLDTLIWLFIYFSSA*RKRGIGWTNCRTQN
Trigger: GTTCTGTGTCCTACAGTTTGTCCAACCAATCCCCCTCTTCCTCAAGGCGGACGAAAAATAAATAAATAACCAGATGAGTGTGTCCAGGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR CAA 90 bp CCAGAGGTCCCAGTGCCCGGAAGAAGCCTCCCTGTGGCCCAGTGCCCAGCGAGGACACAAACAGCCACCTaGGGGGAGGCCTGTGCCGAG +
Preference number: 3 (lower is better)
Translates to: PEVPVPGRSLPVAQCPARTQTAT*GEACAE
Trigger: CTCGGCACAGGCCTCCCCCAAGGTGGCTGTTTGTGT...CCTCGCTGGGCACTGGGCCACAGGGAGGCTTCTTCCGGGCACTGGGACCTCTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR GCA 72 bp GGCAGGAAACAGTCGATGGGAGGCCAGAGGTCCCAGTaGCCGGAAGAAGCCTCCCTGTGGCCCAGTGCCCAG +
Preference number: 3 (lower is better)
Translates to: GRKQSMGGQRSQ*PEEASLWPSAQ
Trigger: CTGGGCACTGGGCCACAGGGAGGCTTCTTCCGGGCACTGGGACCTCTGGCCTCCCATCGACTGTTTCCTGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR GCA 72 bp GTCCCAGTGCCCGGAAGAAGCCTCCCTGTGGCCCAGTaGCCAGCGAGGGAGGATGCGTTTGACATCTGGCAT +
Preference number: 3 (lower is better)
Translates to: VPVPGRSLPVAQ*PAREDAFDIWH
Trigger: ATGCCAGATGTCAAACGCATCCTCCCTCGCTGGGCACTGGGCCACAGGGAGGCTTCTTCCGGGCACTGGGAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 72 bp GGCTCCGTGCCCCAGCAGGGCCCTCAGGGGACAGAGTaGTTCCTCAGGCCAGTGTGGAAGGACAGAGTCAAA +
Preference number: 3 (lower is better)
Translates to: GSVPQQGPQGTE*FLRPVWKDRVK
Trigger: TTTGACTCTGTCCTTCCACACTGGCCTGAGGAACCACTCTGTCCCCTGAGGGCCCTGCTGGGGCACGGAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 72 bp CCGGCTGGAGCTAGGATATGGGTTGTCTTCTTCCGGTaGTGGGGCGGGGGCAGGAAAGGACAGATGGACCTG +
Preference number: 3 (lower is better)
Translates to: PAGARIWVVFFR*WGGGRKGQMDL
Trigger: CAGGTCCATCTGTCCTTTCCTGCCCCCGCCCCACCACCGGAAGAAGACAACCCATATCCTAGCTCCAGCCGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR TCA 72 bp CAGAGCCTCCGAATTTGCCCTGGTTTCCTGATCTCCTaGGGTGGAGAGCAGCAGGCCCCAGGACAGCTCGAG +
Preference number: 3 (lower is better)
Translates to: QSLRICPGFLIS*GGEQQAPGQLE
Trigger: CTCGAGCTGTCCTGGGGCCTGCTGCTCTCCACCTCAGGAGATCAGGAAACCAGGGCAAATTCGGAGGCTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 72 bp CCAGGACACAGGAACATCTGGGCAGGAAACAGTCGATaGGAGGCCAGAGGTCCCAGTGCCCGGAAGAAGCCT +
Preference number: 3 (lower is better)
Translates to: PGHRNIWAGNSR*EARGPSARKKP
Trigger: AGGCTTCTTCCGGGCACTGGGACCTCTGGCCTCCCATCGACTGTTTCCTGCCCAGATGTTCCTGTGTCCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 72 bp GGCCCTCAGGGGACAGAGTGGTTCCTCAGGCCAGTGTaGAAGGACAGAGTCAAAGGCCACATGCCCACCATC +
Preference number: 3 (lower is better)
Translates to: GPQGTEWFLRPV*KDRVKGHMPTI
Trigger: GATGGTGGGCATGTGGCCTTTGACTCTGTCCTTCCACACTGGCCTGAGGAACCACTCTGTCCCCTGAGGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 72 bp CATCTGTGTCAGAACACCAGGTTGGAAGTGGGAGTATaGCTCCGTGCCCCAGCAGGGCCCTCAGGGGACAGA +
Preference number: 3 (lower is better)
Translates to: HLCQNTRLEVGV*LRAPAGPSGDR
Trigger: TCTGTCCCCTGAGGGCCCTGCTGGGGCACGGAGCCATACTCCCACTTCCAACCTGGTGTTCTGACACAGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 72 bp GCTGGAGCTAGGATATGGGTTGTCTTCTTCCGGTGGTaGGGCGGGGGCAGGAAAGGACAGATGGACCTGCGT +
Preference number: 3 (lower is better)
Translates to: AGARIWVVFFRW*GGGRKGQMDLR
Trigger: ACGCAGGTCCATCTGTCCTTTCCTGCCCCCGCCCCACCACCGGAAGAAGACAACCCATATCCTAGCTCCAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 72 bp TCACCATCTCATAGGCAACCGGCTGGAGCTAGGATATaGGTTGTCTTCTTCCGGTGGTGGGGCGGGGGCAGG +
Preference number: 3 (lower is better)
Translates to: SPSHRQPAGARI*VVFFRWWGGGR
Trigger: CCTGCCCCCGCCCCACCACCGGAAGAAGACAACCCATATCCTAGCTCCAGCCGGTTGCCTATGAGATGGTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 72 bp TTACCACAGGCTGCTGCTCTATTGCCAGAAGAGACATaGGACAGCTCCTGGGTCTCCCTGGGGGCTGGGGCT +
Preference number: 3 (lower is better)
Translates to: LPQAAALLPEET*DSSWVSLGAGA
Trigger: AGCCCCAGCCCCCAGGGAGACCCAGGAGCTGTCCCATGTCTCTTCTGGCAATAGAGCAGCAGCCTGTGGTAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR CAA 90 bp AGAACACCAGGTTGGAAGTGGGAGTATGGCTCCGTGCCCCAGCAGGGCCCTCAGGGCATGACTGGTTTCTaGGTTCCCAAGAGGCAGGCT +
Preference number: 3 (lower is better)
Translates to: RTPGWKWEYGSVPQQGPQGMTGF*VPKRQA
Trigger: AGCCTGCCTCTTGGGAACCAAGAAACCAGTCATGCC...CTGAGGGCCCTGCTGGGGCACGGAGCCATACTCCCACTTCCAACCTGGTGTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR CAA 90 bp TACAACCACCAGCTCCACCAGGGGGCCAGACAGAGGCTGAGGGAGACACAGAGGCGAGGGAGGATGCGTTaGACATCTGGCATGACTGGT +
Preference number: 3 (lower is better)
Translates to: YNHQLHQGARQRLRETQRRGRMR*TSGMTG
Trigger: ACCAGTCATGCCAGATGTCAAACGCATCCTCCCTCG...CCTCTGTGTCTCCCTCAGCCTCTGTCTGGCCCCCTGGTGGAGCTGGTGGTTGTA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR TCA 72 bp AAAGCCAGCAGAGCCTCCGAATTTGCCCTGGTTTCCTaGTCTCCTGAGGTGGAGAGCAGCAGGCCCCAGGAC +
Preference number: 3 (lower is better)
Translates to: KASRASEFALVS*SPEVESSRPQD
Trigger: GTCCTGGGGCCTGCTGCTCTCCACCTCAGGAGATCAGGAAACCAGGGCAAATTCGGAGGCTCTGCTGGCTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 72 bp GCCCAGTGCCCAGCGAGGGAGGATGCGTTTGACATCTaGCATGACTGGTTTCTTGGTTCCCAAGAGGCAGGC +
Preference number: 3 (lower is better)
Translates to: AQCPAREDAFDI*HDWFLGSQEAG
Trigger: GCCTGCCTCTTGGGAACCAAGAAACCAGTCATGCCAGATGTCAAACGCATCCTCCCTCGCTGGGCACTGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 72 bp AGGTTGCAAGGGCTGGGGCCACTGAGGCCTTCTCCCTaGGTTCTACCCCCGTCTCTCTTCTTCCTATCTCCT +
Preference number: 3 (lower is better)
Translates to: RLQGLGPLRPSP*VLPPSLFFLSP
Trigger: AGGAGATAGGAAGAAGAGAGACGGGGGTAGAACCCAGGGAGAAGGCCTCAGTGGCCCCAGCCCTTGCAACCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 72 bp AGCTTGTACATCTGTGTCAGAACACCAGGTTGGAAGTaGGAGTATGGCTCCGTGCCCCAGCAGGGCCCTCAG +
Preference number: 3 (lower is better)
Translates to: SLYICVRTPGWK*EYGSVPQQGPQ
Trigger: CTGAGGGCCCTGCTGGGGCACGGAGCCATACTCCCACTTCCAACCTGGTGTTCTGACACAGATGTACAAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 72 bp CTTCTTGGTCCCTGGAGTGGGCCTGTGCACTCTGCCTaGAACCGGACAAGAGGTAGGAGTCATCGGAACACA +
Preference number: 3 (lower is better)
Translates to: LLGPWSGPVHSA*NRTRGRSHRNT
Trigger: TGTGTTCCGATGACTCCTACCTCTTGTCCGGTTCCAGGCAGAGTGCACAGGCCCACTCCAGGGACCAAGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR CAA 90 bp GGCCGGCAGTCAGCAGGAGGAAGGTTGCAAGGGCTGGGGCCACTGAGGCCTTCTAAATTCTTGGGCCTCTaGAGAAGTTCCAAAAACCCA +
Preference number: 3 (lower is better)
Translates to: GRQSAGGRLQGLGPLRPSKFLGL*RSSKNP
Trigger: TGGGTTTTTGGAACTTCTCAAGAGGCCCAAGAATTT...AGAAGGCCTCAGTGGCCCCAGCCCTTGCAACCTTCCTCCTGCTGACTGCCGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR CAA 90 bp TTGTCTCATAGGGAGAGCAAAGCTGGAGACCAAGTTCTCCAGAGTGAGGCCGGCCTTCCTATCTCCTTCTaGGTCCCTGGAGTGGGCCTG +
Preference number: 3 (lower is better)
Translates to: LSHRESKAGDQVLQSEAGLPISF*VPGVGL
Trigger: CAGGCCCACTCCAGGGACCAAGAAGGAGATAGGAAG...GCCGGCCTCACTCTGGAGAACTTGGTCTCCAGCTTTGCTCTCCCTATGAGACAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR TCA 72 bp TTATCCCTGATTCCAATCTCCAGACTCCCCTCACTCTaGGCTAGCCCATGGCGTCTTCTGGAGGCCAGGGAG +
Preference number: 3 (lower is better)
Translates to: LSLIPISRLPSL*ASPWRLLEARE
Trigger: CTCCCTGGCCTCCAGAAGACGCCATGGGCTAGCTCAGAGTGAGGGGAGTCTGGAGATTGGAATCAGGGATAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR TCA 72 bp TGGGACAGAAGAAGGGTAGGAAGGTGGGCTCAGACCTaGGCCTGTCAGCAGGAAGGTCCAGTTCTACTCCCT +
Preference number: 3 (lower is better)
Translates to: WDRRRVGRWAQT*ACQQEGPVLLP
Trigger: AGGGAGTAGAACTGGACCTTCCTGCTGACAGGCTCAGGTCTGAGCCCACCTTCCTACCCTTCTTCTGTCCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 72 bp CCAGGAGGGCATGGTTCTGAGCAGGCAAAGGAGCCTTaGCATGCTCATGTCTCAGCTCACCATCTCATAGGC +
Preference number: 3 (lower is better)
Translates to: PGGHGSEQAKEP*HAHVSAHHLIG
Trigger: GCCTATGAGATGGTGAGCTGAGACATGAGCATGCCAAGGCTCCTTTGCCTGCTCAGAACCATGCCCTCCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR TCA 72 bp GATTCAGGCAAAGACAGAAAGCCCAGCATGGCACCTTaGGTCAAATGCTCACCGAGTCCTGGTGTGGGCAGA +
Preference number: 3 (lower is better)
Translates to: DSGKDRKPSMAP*VKCSPSPGVGR
Trigger: TCTGCCCACACCAGGACTCGGTGAGCATTTGACTCAAGGTGCCATGCTGGGCTTTCTGTCTTTGCCTGAATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR CAA 90 bp TTGTCTCATAGGGAGAGCAAAGCTGGAGACCAAGTTCTCCAGAGTGAGGCCGGCTATTTTTCGTCCGCCTaGAGGAAGAGGGGGATTGGT +
Preference number: 3 (lower is better)
Translates to: LSHRESKAGDQVLQSEAGYFSSA*RKRGIG
Trigger: ACCAATCCCCCTCTTCCTCAAGGCGGACGAAAAATA...GCCGGCCTCACTCTGGAGAACTTGGTCTCCAGCTTTGCTCTCCCTATGAGACAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR-3UTR CAA 90 bp AGAGCAAAGCTGGAGACCAAGTTCTCCAGAGTGAGGCCGGCAGTCAGCAGGAGGCACCCTCATAACCACTaGGAAAATGATGCTCTTTCT +
Preference number: 3 (lower is better)
Translates to: RAKLETKFSRVRPAVSRRHPHNH*ENDALS
Trigger: AGAAAGAGCATCATTTTCCAAGTGGTTATGAGGGTG...CCTCCTGCTGACTGCCGGCCTCACTCTGGAGAACTTGGTCTCCAGCTTTGCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR TCA 72 bp CACCAGTTAGCCATAGAGCTTTCTCTTCAGAATGGGTaGTATTTACAACCACCAGCTCCACCAGGGGGCCAG +
Preference number: 3 (lower is better)
Translates to: HQLAIELSLQNG*YLQPPAPPGGQ
Trigger: CTGGCCCCCTGGTGGAGCTGGTGGTTGTAAATATCACCCATTCTGAAGAGAAAGCTCTATGGCTAACTGGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR TCA 72 bp CATTCTGAGCTCAGCGGAAACTTCCAGAAGCAGGTATaGAAGCCAGCAGAGCCTCCGAATTTGCCCTGGTTT +
Preference number: 3 (lower is better)
Translates to: HSELSGNFQKQV*KPAEPPNLPWF
Trigger: AAACCAGGGCAAATTCGGAGGCTCTGCTGGCTTTCATACCTGCTTCTGGAAGTTTCCGCTGAGCTCAGAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 72 bp CATTCTTGGATTCAGGCAAAGACAGAAAGCCCAGCATaGCACCTTGAGTCAAATGCTCACCGAGTCCTGGTG +
Preference number: 3 (lower is better)
Translates to: HSWIQAKTESPA*HLESNAHRVLV
Trigger: CACCAGGACTCGGTGAGCATTTGACTCAAGGTGCCATGCTGGGCTTTCTGTCTTTGCCTGAATCCAAGAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 72 bp GAAGCACCAGTTAGCCATAGAGCTTTCTCTTCAGAATaGGTGATATTTACAACCACCAGCTCCACCAGGGGG +
Preference number: 3 (lower is better)
Translates to: EAPVSHRAFSSE*VIFTTTSSTRG
Trigger: CCCCCTGGTGGAGCTGGTGGTTGTAAATATCACCCATTCTGAAGAGAAAGCTCTATGGCTAACTGGTGCTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 72 bp CACATGCCCACCATCCCTCAGATCCGTGAAACCCTCTaGACCTCCAAGATTAGTCAGTATGTCCTGTACATT +
Preference number: 3 (lower is better)
Translates to: HMPTIPQIRETL*TSKISQYVLYI
Trigger: AATGTACAGGACATACTGACTAATCTTGGAGGTCCAGAGGGTTTCACGGATCTGAGGGATGGTGGGCATGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR TCA 72 bp GGGGAGGTGGTGTTGCTCTTTTTCAGGATAAAGAGGTaGGTACAGCTTGGTCTTCTGACGATGTTCTTCAGT +
Preference number: 3 (lower is better)
Translates to: GEVVLLFFRIKR*VQLGLLTMFFS
Trigger: ACTGAAGAACATCGTCAGAAGACCAAGCTGTACTCACCTCTTTATCCTGAAAAAGAGCAACACCACCTCCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 72 bp TATTTTTCGTCCGCCTTGAGGAAGAGGGGGATTGGTTaGACAAACTGTAGGACACAGAACACATTCTTGGAT +
Preference number: 3 (lower is better)
Translates to: YFSSALRKRGIG*TNCRTQNTFLD
Trigger: ATCCAAGAATGTGTTCTGTGTCCTACAGTTTGTCCAACCAATCCCCCTCTTCCTCAAGGCGGACGAAAAATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 72 bp ACGCGTGTTATAGAAAAGAGGGTGAGTTTCACTTTCTaGAGAGTTCTTTCGAACCTGGACACACTCATCTGG +
Preference number: 3 (lower is better)
Translates to: TRVIEKRVSFTF*RVLSNLDTLIW
Trigger: CCAGATGAGTGTGTCCAGGTTCGAAAGAACTCTCCAGAAAGTGAAACTCACCCTCTTTTCTATAACACGCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CCA 72 bp GACGATGTTCTTCAGTATGCCACCCTCATAACCACTTaGAAAATGATGCTCTTTCTTTCTTTCTTTCTTTCT +
Preference number: 3 (lower is better)
Translates to: DDVLQYATLITT*KMMLFLSFFLS
Trigger: AGAAAGAAAGAAAGAAAGAAAGAGCATCATTTTCCAAGTGGTTATGAGGGTGGCATACTGAAGAACATCGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR TCA 90 bp TCCCAGTGCCCGGAAGAAGCCTCCCTGTGGCCCAGTGCCCAGCGAGGGAGGATGACAGTCCCGAATGGGTaGGGTCGCCGCGAGCGCGGC +
Preference number: 4 (lower is better)
Translates to: SQCPEEASLWPSAQRGRMTVPNG*GRRERG
Trigger: GCCGCGCTCGCGGCGACCTCACCCATTCGGGACTGT...CATCCTCCCTCGCTGGGCACTGGGCCACAGGGAGGCTTCTTCCGGGCACTGGGA
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR GCA 90 bp GGAAGTGGGAGTATGGCTCCGTGCCCCAGCAGGGCCCTCAGGGGACAGAGTGGTGTGGTCAGCAGCATCTaGAGCCCGCGGTCGCATCGC +
Preference number: 4 (lower is better)
Translates to: GSGSMAPCPSRALRGQSGVVSSI*SPRSHR
Trigger: GCGATGCGACCGCGGGCTGCAGATGCTGCTGACCAC...ACCACTCTGTCCCCTGAGGGCCCTGCTGGGGCACGGAGCCATACTCCCACTTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR CCA 90 bp TCCCAGTGCCCGGAAGAAGCCTCCCTGTGGCCCAGTGCCCAGCGAGGGAGGATGACCTTGAACTGGACCTaGACCGCCGTCGCCGGTACC +
Preference number: 4 (lower is better)
Translates to: SQCPEEASLWPSAQRGRMTLNWT*TAVAGT
Trigger: GGTACCGGCGACGGCGGTCCAGGTCCAGTTCAAGGT...CATCCTCCCTCGCTGGGCACTGGGCCACAGGGAGGCTTCTTCCGGGCACTGGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR GCA 90 bp GTGAGGCCGGCAGTCAGCAGGAGGAAGGTTGCAAGGGCTGGGGCCACTGAGGCCTCAGGTTGGTGCCGTTaGAGATGTGCGCGCTGGAGT +
Preference number: 4 (lower is better)
Translates to: VRPAVSRRKVARAGATEASGWCR*RCARWS
Trigger: ACTCCAGCGCGCACATCTGCAACGGCACCAACCTGA...GGCCTCAGTGGCCCCAGCCCTTGCAACCTTCCTCCTGCTGACTGCCGGCCTCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR CCA 90 bp TACAACCACCAGCTCCACCAGGGGGCCAGACAGAGGCTGAGGGAGACACAGAGGGGGGCCCGTCGTCCATaGTCAGGTTGGTGCCGTTGC +
Preference number: 4 (lower is better)
Translates to: YNHQLHQGARQRLRETQRGARRP*SGWCRC
Trigger: GCAACGGCACCAACCTGACCATGGACGACGGGCCCC...CCTCTGTGTCTCCCTCAGCCTCTGTCTGGCCCCCTGGTGGAGCTGGTGGTTGTA
64% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR GCA 90 bp TACAACCACCAGCTCCACCAGGGGGCCAGACAGAGGCTGAGGGAGACACAGAGGCCATGGTCAGGTTGGTaGCGTTGCAGATGTGCGCGC +
Preference number: 4 (lower is better)
Translates to: YNHQLHQGARQRLRETQRPWSGW*RCRCAR
Trigger: GCGCGCACATCTGCAACGGCACCAACCTGACCATGG...CCTCTGTGTCTCCCTCAGCCTCTGTCTGGCCCCCTGGTGGAGCTGGTGGTTGTA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR CCA 90 bp AGAGCAAAGCTGGAGACCAAGTTCTCCAGAGTGAGGCCGGCAGTCAGCAGGAGGCCGTGGACCTTGAACTaGACCTGGACCGCCGTCGCC +
Preference number: 4 (lower is better)
Translates to: RAKLETKFSRVRPAVSRRPWTLN*TWTAVA
Trigger: GGCGACGGCGGTCCAGGTCCAGTTCAAGGTCCACGG...CCTCCTGCTGACTGCCGGCCTCACTCTGGAGAACTTGGTCTCCAGCTTTGCTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR CCA 90 bp CTCCGTGCCCCAGCAGGGCCCTCAGGGGACAGAGTGGTTCCTCAGGCCAGTGTGTGGATAGCGTGTACATaGACAGCTCACCCATGGGAA +
Preference number: 4 (lower is better)
Translates to: LRAPAGPSGDRVVPQASVWIACT*TAHPWE
Trigger: TTCCCATGGGTGAGCTGTCCATGTACACGCTATCCA...CACACTGGCCTGAGGAACCACTCTGTCCCCTGAGGGCCCTGCTGGGGCACGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR CCA 90 bp AGAACACCAGGTTGGAAGTGGGAGTATGGCTCCGTGCCCCAGCAGGGCCCTCAGTGTAGCTCGGCATCCTaGCGTAAGGAGAGGAGGAAG +
Preference number: 4 (lower is better)
Translates to: RTPGWKWEYGSVPQQGPQCSSAS*RKERRK
Trigger: CTTCCTCCTCTCCTTACGCCAGGATGCCGAGCTACA...CTGAGGGCCCTGCTGGGGCACGGAGCCATACTCCCACTTCCAACCTGGTGTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CAA 72 bp CATCTCATAGGCAACCGGCTGGAGCTAGGATATGGGTaGTCTTCTTCCGGTGGTGGGGCGGGGGCAGGAAAG +
Preference number: 4 (lower is better)
Translates to: HLIGNRLELGYG*SSSGGGAGAGK
Trigger: CTTTCCTGCCCCCGCCCCACCACCGGAAGAAGACAACCCATATCCTAGCTCCAGCCGGTTGCCTATGAGATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR GCA 90 bp AGAACACCAGGTTGGAAGTGGGAGTATGGCTCCGTGCCCCAGCAGGGCCCTCAGAAGAAGTCATGCATCTaGAGGAAGCCAGCGTCCTGG +
Preference number: 4 (lower is better)
Translates to: RTPGWKWEYGSVPQQGPQKKSCI*RKPASW
Trigger: CCAGGACGCTGGCTTCCTGCAGATGCATGACTTCTT...CTGAGGGCCCTGCTGGGGCACGGAGCCATACTCCCACTTCCAACCTGGTGTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR GCA 90 bp TTGTCTCATAGGGAGAGCAAAGCTGGAGACCAAGTTCTCCAGAGTGAGGCCGGCGTGCCGTTGCAGATGTaGGCGCTGGAGTACAGCCAG +
Preference number: 4 (lower is better)
Translates to: LSHRESKAGDQVLQSEAGVPLQM*ALEYSQ
Trigger: CTGGCTGTACTCCAGCGCGCACATCTGCAACGGCAC...GCCGGCCTCACTCTGGAGAACTTGGTCTCCAGCTTTGCTCTCCCTATGAGACAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CAA 72 bp TCCCTGTGGCCCAGTGCCCAGCGAGGGAGGATGCGTTaGACATCTGGCATGACTGGTTTCTTGGTTCCCAAG +
Preference number: 4 (lower is better)
Translates to: SLWPSAQRGRMR*TSGMTGFLVPK
Trigger: CTTGGGAACCAAGAAACCAGTCATGCCAGATGTCAAACGCATCCTCCCTCGCTGGGCACTGGGCCACAGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CAA 72 bp GGAGAGGGCCTGCAGCAGGGACAGACCACACATGTCTaGACATTGGCGCTCATTTGCGGCACATGCTTGGAC +
Preference number: 4 (lower is better)
Translates to: GEGLQQGQTTHV*TLALICGTCLD
Trigger: GTCCAAGCATGTGCCGCAAATGAGCGCCAATGTCAAGACATGTGTGGTCTGTCCCTGCTGCAGGCCCTCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR TCA 90 bp GCTTTCTCTTCAGAATGGGTGATATTTACAACCACCAGCTCCACCAGGGGGCCATGGGAATGGCTCCGGTaGTCTTCAGGCCCACGGGAG +
Preference number: 4 (lower is better)
Translates to: AFSSEWVIFTTTSSTRGPWEWLR*SSGPRE
Trigger: CTCCCGTGGGCCTGAAGATCACCGGAGCCATTCCCA...TGGCCCCCTGGTGGAGCTGGTGGTTGTAAATATCACCCATTCTGAAGAGAAAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR TCA 90 bp TTGTCTCATAGGGAGAGCAAAGCTGGAGACCAAGTTCTCCAGAGTGAGGCCGGCGGAGCAGAATGGTGCTaGGGATGGGAAAGACACTGG +
Preference number: 4 (lower is better)
Translates to: LSHRESKAGDQVLQSEAGGAEWC*GWERHW
Trigger: CCAGTGTCTTTCCCATCCTCAGCACCATTCTGCTCC...GCCGGCCTCACTCTGGAGAACTTGGTCTCCAGCTTTGCTCTCCCTATGAGACAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CAA 72 bp GGATTCAGGCAAAGACAGAAAGCCCAGCATGGCACCTaGAGTCAAATGCTCACCGAGTCCTGGTGTGGGCAG +
Preference number: 4 (lower is better)
Translates to: GFRQRQKAQHGT*SQMLTESWCGQ
Trigger: CTGCCCACACCAGGACTCGGTGAGCATTTGACTCAAGGTGCCATGCTGGGCTTTCTGTCTTTGCCTGAATCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CAA 72 bp GGCCTGCAGCAGGGACAGACCACACATGTCTTGACATaGGCGCTCATTTGCGGCACATGCTTGGACACATAC +
Preference number: 4 (lower is better)
Translates to: GLQQGQTTHVLT*ALICGTCLDTY
Trigger: GTATGTGTCCAAGCATGTGCCGCAAATGAGCGCCAATGTCAAGACATGTGTGGTCTGTCCCTGCTGCAGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR CCA 90 bp CTGGTTATTTATTTATTTTTCGTCCGCCTTGAGGAAGAGGGGGATTGGTTGGACCGCCACAGTCCCGAATaGGTGAGGTCGCCGCGAGCG +
Preference number: 4 (lower is better)
Translates to: LVIYLFFVRLEEEGDWLDRHSPE*VRSPRA
Trigger: CGCTCGCGGCGACCTCACCCATTCGGGACTGTGGCG...GTCCAACCAATCCCCCTCTTCCTCAAGGCGGACGAAAAATAAATAAATAACCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CAA 72 bp AGCTTGCATGGAAGTTTACCACAGGCTGCTGCTCTATaGCCAGAAGAGACATGGGACAGCTCCTGGGTCTCC +
Preference number: 4 (lower is better)
Translates to: SLHGSLPQAAAL*PEETWDSSWVS
Trigger: GGAGACCCAGGAGCTGTCCCATGTCTCTTCTGGCAATAGAGCAGCAGCCTGTGGTAAACTTCCATGCAAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CAA 72 bp ATCTTTAAGCTTGTACATCTGTGTCAGAACACCAGGTaGGAAGTGGGAGTATGGCTCCGTGCCCCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: IFKLVHLCQNTR*EVGVWLRAPAG
Trigger: CCCTGCTGGGGCACGGAGCCATACTCCCACTTCCAACCTGGTGTTCTGACACAGATGTACAAGCTTAAAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR GCA 90 bp TTGTCTCATAGGGAGAGCAAAGCTGGAGACCAAGTTCTCCAGAGTGAGGCCGGCGGACAATATTGTTCTTaGGGCTGTAGATCCTCCCAG +
Preference number: 4 (lower is better)
Translates to: LSHRESKAGDQVLQSEAGGQYCS*GCRSSQ
Trigger: CTGGGAGGATCTACAGCCGCAAGAACAATATTGTCC...GCCGGCCTCACTCTGGAGAACTTGGTCTCCAGCTTTGCTCTCCCTATGAGACAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CAA 72 bp CTCCACGAGCAGGTGACTGAGGTAAGAATTGGCGTGTaGTCACTTCTAAGTAAGACAGTTACCGGGGTCACA +
Preference number: 4 (lower is better)
Translates to: LHEQVTEVRIGV*SLLSKTVTGVT
Trigger: TGTGACCCCGGTAACTGTCTTACTTAGAAGTGACAACACGCCAATTCTTACCTCAGTCACCTGCTCGTGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR CCA 90 bp CTGGTTATTTATTTATTTTTCGTCCGCCTTGAGGAAGAGGGGGATTGGTTGGACGGATGGGAAAGACACTaGAGGCTCGCACAATGCGGA +
Preference number: 4 (lower is better)
Translates to: LVIYLFFVRLEEEGDWLDGWERH*RLAQCG
Trigger: TCCGCATTGTGCGAGCCTCCAGTGTCTTTCCCATCC...GTCCAACCAATCCCCCTCTTCCTCAAGGCGGACGAAAAATAAATAAATAACCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR TCA 90 bp CTGGTTATTTATTTATTTTTCGTCCGCCTTGAGGAAGAGGGGGATTGGTTGGACGCCGGTTCAGCATGCTaGCATGGAAACCTTCCTTTA +
Preference number: 4 (lower is better)
Translates to: LVIYLFFVRLEEEGDWLDAGSAC*HGNLPL
Trigger: TAAAGGAAGGTTTCCATGTCAGCATGCTGAACCGGC...GTCCAACCAATCCCCCTCTTCCTCAAGGCGGACGAAAAATAAATAAATAACCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR CCA 90 bp CCTACCTCGGGAGAAAGTCAGCCTTCTGTTTCTACCTTATCCCTGATTCCAATCGTAATCATTGTCCTCTaGGAAGTGGTTGATCCGGAA +
Preference number: 4 (lower is better)
Translates to: PTSGESQPSVSTLSLIPIVIIVL*EVVDPE
Trigger: TTCCGGATCAACCACTTCCCAGAGGACAATGATTAC...GATTGGAATCAGGGATAAGGTAGAAACAGAAGGCTGACTTTCTCCCGAGGTAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR GCA 90 bp CACCCTCATAACCACTTGGAAAATGATGCTCTTTCTTTCTTTCTTTCTTTCTTTTGGAGGCTCGCACAATaGGGAGGAGGTACTCGGAGC +
Preference number: 4 (lower is better)
Translates to: HPHNHLENDALSFFLSFFWRLAQ*GGGTRS
Trigger: GCTCCGAGTACCTCCTCCGCATTGTGCGAGCCTCCA...AAAGAAAGAAAGAAAGAAAGAAAGAGCATCATTTTCCAAGTGGTTATGAGGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CAA 72 bp TGTTCACTCTCAGGTTTCCCTTTCAAATCTTTAAGCTaGTACATCTGTGTCAGAACACCAGGTTGGAAGTGG +
Preference number: 4 (lower is better)
Translates to: CSLSGFPFKSLS*YICVRTPGWKW
Trigger: CCACTTCCAACCTGGTGTTCTGACACAGATGTACAAGCTTAAAGATTTGAAAGGGAAACCTGAGAGTGAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
3UTR CAA 72 bp ACACTCATCTGGTTATTTATTTATTTTTCGTCCGCCTaGAGGAAGAGGGGGATTGGTTGGACAAACTGTAGG +
Preference number: 4 (lower is better)
Translates to: TLIWLFIYFSSA*RKRGIGWTNCR
Trigger: CCTACAGTTTGTCCAACCAATCCCCCTCTTCCTCAAGGCGGACGAAAAATAAATAAATAACCAGATGAGTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR CCA 90 bp CACCCTCATAACCACTTGGAAAATGATGCTCTTTCTTTCTTTCTTTCTTTCTTTTTCAGCATGCTGACATaGAAACCTTCCTTTAGGTCC +
Preference number: 4 (lower is better)
Translates to: HPHNHLENDALSFFLSFFFSMLT*KPSFRS
Trigger: GGACCTAAAGGAAGGTTTCCATGTCAGCATGCTGAA...AAAGAAAGAAAGAAAGAAAGAAAGAGCATCATTTTCCAAGTGGTTATGAGGGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS TCA 90 bp TATAGATGCCTTCGATGCAACACACCCGCCACAGTCCCGAATGGGTaGGGTCGCCGCGAGCGCGGCGGGGCGGGGGCCCGTCGTCCATGG +
Preference number: 5 (lower is better)
Translates to: YRCLRCNTPATVPNG*GRRERGGAGARRPW
Trigger: CCATGGACGACGGGCCCCCGCCCCGCCGCGCTCGCGGCGACCTCACCCATTCGGGACTGTGGCGGGTGTGTTGCATCGAAGGCATCTATA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS CCA 90 bp CGGGAGATGCATCCCTGGAGGGTGAGGCCTCCGTGGACCTTGAACTaGACCTGGACCGCCGTCGCCGGTACCTGTAGCTCGGCATCCTGG +
Preference number: 5 (lower is better)
Translates to: REMHPWRVRPPWTLN*TWTAVAGTCSSASW
Trigger: CCAGGATGCCGAGCTACAGGTACCGGCGACGGCGGTCCAGGTCCAGTTCAAGGTCCACGGAGGCCTCACCCTCCAGGGATGCATCTCCCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS CCA 90 bp TCTTCAGGCCCACGGGAGATGCATCCCTGGAGGGTGAGGCCTCCGTaGACCTTGAACTGGACCTGGACCGCCGTCGCCGGTACCTGTAGC +
Preference number: 5 (lower is better)
Translates to: SSGPREMHPWRVRPP*TLNWTWTAVAGTCS
Trigger: GCTACAGGTACCGGCGACGGCGGTCCAGGTCCAGTTCAAGGTCCACGGAGGCCTCACCCTCCAGGGATGCATCTCCCGTGGGCCTGAAGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS CCA 90 bp ATGCATCCCTGGAGGGTGAGGCCTCCGTGGACCTTGAACTGGACCTaGACCGCCGTCGCCGGTACCTGTAGCTCGGCATCCTGGCGTAAG +
Preference number: 5 (lower is better)
Translates to: MHPWRVRPPWTLNWT*TAVAGTCSSASWRK
Trigger: CTTACGCCAGGATGCCGAGCTACAGGTACCGGCGACGGCGGTCCAGGTCCAGTTCAAGGTCCACGGAGGCCTCACCCTCCAGGGATGCAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR CAA 90 bp TCCCAGTGCCCGGAAGAAGCCTCCCTGTGGCCCAGTGCCCAGCGAGGGAGGATGTCGTCCATGGTCAGGTaGGTGCCGTTGCAGATGTGC +
Preference number: 5 (lower is better)
Translates to: SQCPEEASLWPSAQRGRMSSMVR*VPLQMC
Trigger: GCACATCTGCAACGGCACCAACCTGACCATGGACGA...CATCCTCCCTCGCTGGGCACTGGGCCACAGGGAGGCTTCTTCCGGGCACTGGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS TCA 90 bp TGGATAGCGTGTACATGGACAGCTCACCCATGGGAATGGCTCCGGTaGTCTTCAGGCCCACGGGAGATGCATCCCTGGAGGGTGAGGCCT +
Preference number: 5 (lower is better)
Translates to: WIACTWTAHPWEWLR*SSGPREMHPWRVRP
Trigger: AGGCCTCACCCTCCAGGGATGCATCTCCCGTGGGCCTGAAGATCACCGGAGCCATTCCCATGGGTGAGCTGTCCATGTACACGCTATCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR CAA 90 bp GGAAGTGGGAGTATGGCTCCGTGCCCCAGCAGGGCCCTCAGGGGACAGAGTGGTTTAAGGAACTCCCGCTaGGTCTTAAACCTCAACTCT +
Preference number: 5 (lower is better)
Translates to: GSGSMAPCPSRALRGQSGLRNSR*VLNLNS
Trigger: AGAGTTGAGGTTTAAGACCAAGCGGGAGTTCCTTAA...ACCACTCTGTCCCCTGAGGGCCCTGCTGGGGCACGGAGCCATACTCCCACTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR CAA 90 bp CCTGTCAGCAGGAAGGTCCAGTTCTACTCCCTTTGTCTCATAGGGAGAGCAAAGAGGCCTCCGTGGACCTaGAACTGGACCTGGACCGCC +
Preference number: 5 (lower is better)
Translates to: PVSRKVQFYSLCLIGRAKRPPWT*NWTWTA
Trigger: GGCGGTCCAGGTCCAGTTCAAGGTCCACGGAGGCCT...CTTTGCTCTCCCTATGAGACAAAGGGAGTAGAACTGGACCTTCCTGCTGACAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR CAA 90 bp AGGCCAGGGAGGATCGCACTCAGCTCCACTTCACTGTCTATAATCTTAAGGGTCGTCAGGTTGGTGCCGTaGCAGATGTGCGCGCTGGAG +
Preference number: 5 (lower is better)
Translates to: RPGRIALSSTSLSIILRVVRLVP*QMCALE
Trigger: CTCCAGCGCGCACATCTGCAACGGCACCAACCTGAC...GACCCTTAAGATTATAGACAGTGAAGTGGAGCTGAGTGCGATCCTCCCTGGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR CAA 90 bp CCTGTCAGCAGGAAGGTCCAGTTCTACTCCCTTTGTCTCATAGGGAGAGCAAAGTTGTCTTCGTCACGTTaGTCACTGGGGTCGCCCGTG +
Preference number: 5 (lower is better)
Translates to: PVSRKVQFYSLCLIGRAKLSSSR*SLGSPV
Trigger: CACGGGCGACCCCAGTGACAAACGTGACGAAGACAA...CTTTGCTCTCCCTATGAGACAAAGGGAGTAGAACTGGACCTTCCTGCTGACAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS-3UTR CAA 90 bp CTCCACGAGCAGGTGACTGAGGTAAGAATTGGCGTGTTGTCACTTCTAAGTAAGTCCTCTGGGAAGTGGTaGATCCGGAAGCAGTGCCCT +
Preference number: 5 (lower is better)
Translates to: LHEQVTEVRIGVLSLLSKSSGKW*IRKQCP
Trigger: AGGGCACTGCTTCCGGATCAACCACTTCCCAGAGGA...CTTACTTAGAAGTGACAACACGCCAATTCTTACCTCAGTCACCTGCTCGTGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS GCA 90 bp GTTGCTGGAAATGTAGACGATGATACCGATGATATTACTGAGGCCTaGCGCCACAAAGAGGATTCCCGCGCTGAGGACAATATTGTTCTT +
Preference number: 5 (lower is better)
Translates to: VAGNVDDDTDDITEA*RHKEDSRAEDNIVL
Trigger: AAGAACAATATTGTCCTCAGCGCGGGAATCCTCTTTGTGGCGGCAGGCCTCAGTAATATCATCGGTATCATCGTCTACATTTCCAGCAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS GCA 72 bp GGCGGGGCGGGGGCCCGTCGTCCATGGTCAGGTTGGTaGCGTTGCAGATGTGCGCGCTGGAGTACAGCCAGT +
Preference number: 6 (lower is better)
Translates to: GGAGARRPWSGW*RCRCARWSTAS
Trigger: ACTGGCTGTACTCCAGCGCGCACATCTGCAACGGCACCAACCTGACCATGGACGACGGGCCCCCGCCCCGCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS CCA 72 bp CCACGGGAGATGCATCCCTGGAGGGTGAGGCCTCCGTaGACCTTGAACTGGACCTGGACCGCCGTCGCCGGT +
Preference number: 6 (lower is better)
Translates to: PREMHPWRVRPP*TLNWTWTAVAG
Trigger: ACCGGCGACGGCGGTCCAGGTCCAGTTCAAGGTCCACGGAGGCCTCACCCTCCAGGGATGCATCTCCCGTGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS CCA 72 bp TGGAGGGTGAGGCCTCCGTGGACCTTGAACTGGACCTaGACCGCCGTCGCCGGTACCTGTAGCTCGGCATCC +
Preference number: 6 (lower is better)
Translates to: WRVRPPWTLNWT*TAVAGTCSSAS
Trigger: GGATGCCGAGCTACAGGTACCGGCGACGGCGGTCCAGGTCCAGTTCAAGGTCCACGGAGGCCTCACCCTCCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS CCA 72 bp CATCCCTGGAGGGTGAGGCCTCCGTGGACCTTGAACTaGACCTGGACCGCCGTCGCCGGTACCTGTAGCTCG +
Preference number: 6 (lower is better)
Translates to: HPWRVRPPWTLN*TWTAVAGTCSS
Trigger: CGAGCTACAGGTACCGGCGACGGCGGTCCAGGTCCAGTTCAAGGTCCACGGAGGCCTCACCCTCCAGGGATG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS TCA 72 bp TGTACATGGACAGCTCACCCATGGGAATGGCTCCGGTaGTCTTCAGGCCCACGGGAGATGCATCCCTGGAGG +
Preference number: 6 (lower is better)
Translates to: CTWTAHPWEWLR*SSGPREMHPWR
Trigger: CCTCCAGGGATGCATCTCCCGTGGGCCTGAAGATCACCGGAGCCATTCCCATGGGTGAGCTGTCCATGTACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS GCA 72 bp TGGAAACCTTCCTTTAGGTCCTGTTGGAAGAAGTCATaGATCTGCAGGAAGCCAGCGTCCTGGTCCGGACTG +
Preference number: 6 (lower is better)
Translates to: WKPSFRSCWKKS*ICRKPASWSGL
Trigger: CAGTCCGGACCAGGACGCTGGCTTCCTGCAGATGCATGACTTCTTCCAACAGGACCTAAAGGAAGGTTTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS CCA 72 bp CACACGGGAGTCGTCCGCCGGTTCAGCATGCTGACATaGAAACCTTCCTTTAGGTCCTGTTGGAAGAAGTCA +
Preference number: 6 (lower is better)
Translates to: HTGVVRRFSMLT*KPSFRSCWKKS
Trigger: TGACTTCTTCCAACAGGACCTAAAGGAAGGTTTCCATGTCAGCATGCTGAACCGGCGGACGACTCCCGTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4
CDS GCA 72 bp AATGTAGACGATGATACCGATGATATTACTGAGGCCTaGCGCCACAAAGAGGATTCCCGCGCTGAGGACAAT +
Preference number: 6 (lower is better)
Translates to: NVDDDTDDITEA*RHKEDSRAEDN
Trigger: ATTGTCCTCAGCGCGGGAATCCTCTTTGTGGCGGCAGGCCTCAGTAATATCATCGGTATCATCGTCTACATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021066.4