Pregenerated sensors for CACNG1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020722Ensembl transcript IDs: ENSMUST00000021065.6
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AAGCCTGAGCTGGGGCAGGCACGGAGGAGGGCCCTTTCATATACCTaGTGGCCTGCTTCCTCTGACCCTGGGCAGGTCTGCGTTTGTGTC | + |
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Preference number: 1 (lower is better) Translates to: KPELGQARRRALSYT*WPASSDPGQVCVCV Trigger: GACACAAACGCAGACCTGCCCAGGGTCAGAGGAAGCAGGCCAGCAGGTATATGAAAGGGCCCTCCTCCGTGCCTGCCCCAGCTCAGGCTT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR CCA 90 bp | CCTGAGCTGGGGCAGGCACGGAGGAGGGCCCTTTCATATACCTGCTaGCCTGCTTCCTCTGACCCTGGGCAGGTCTGCGTTTGTGTCCAT | + |
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Preference number: 1 (lower is better) Translates to: PELGQARRRALSYTC*PASSDPGQVCVCVH Trigger: ATGGACACAAACGCAGACCTGCCCAGGGTCAGAGGAAGCAGGCCAGCAGGTATATGAAAGGGCCCTCCTCCGTGCCTGCCCCAGCTCAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR CCA 90 bp | AGCTTTCTAAAGATGACCAGACCAGATCGTCACAGCCGTCAGGCATaGTGGGCAAGCCTGAGCTGGGGCAGGCACGGAGGAGGGCCCTTT | + |
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Preference number: 1 (lower is better) Translates to: SFLKMTRPDRHSRQA*WASLSWGRHGGGPF Trigger: AAAGGGCCCTCCTCCGTGCCTGCCCCAGCTCAGGCTTGCCCACCATGCCTGACGGCTGTGACGATCTGGTCTGGTCATCTTTAGAAAGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR CCA 90 bp | TTTCTAAAGATGACCAGACCAGATCGTCACAGCCGTCAGGCATGGTaGGCAAGCCTGAGCTGGGGCAGGCACGGAGGAGGGCCCTTTCAT | + |
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Preference number: 1 (lower is better) Translates to: FLKMTRPDRHSRQAW*ASLSWGRHGGGPFH Trigger: ATGAAAGGGCCCTCCTCCGTGCCTGCCCCAGCTCAGGCTTGCCCACCATGCCTGACGGCTGTGACGATCTGGTCTGGTCATCTTTAGAAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR GCA 90 bp | GGCCTGCTTCCTCTGACCCTGGGCAGGTCTGCGTTTGTGTCCATGTaGACTGTTTGTAGAGGAGCTCAGAGGGAGAGACACGTGAGAGAC | + |
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Preference number: 1 (lower is better) Translates to: GLLPLTLGRSAFVSM*TVCRGAQRERHVRD Trigger: GTCTCTCACGTGTCTCTCCCTCTGAGCTCCTCTACAAACAGTGCACATGGACACAAACGCAGACCTGCCCAGGGTCAGAGGAAGCAGGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR GCA 90 bp | ATGGCGGAGAAGAGTGGGGGAGGAGCTGACTCAGGACACCCGCGATaGTCAGAACTGCAGAATGAGAACAGGCTGTTCCCGGAAGCTTTC | + |
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Preference number: 1 (lower is better) Translates to: MAEKSGGGADSGHPR*SELQNENRLFPEAF Trigger: GAAAGCTTCCGGGAACAGCCTGTTCTCATTCTGCAGTTCTGAGCATCGCGGGTGTCCTGAGTCAGCTCCTCCCCCACTCTTCTCCGCCAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR CCA 90 bp | AAGCCAAGGAGAGATGTTCAGTTCACAGAGGAGGGGTTCGTATCATaGCGGAGAAGAGTGGGGGAGGAGCTGACTCAGGACACCCGCGAT | + |
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Preference number: 1 (lower is better) Translates to: KPRRDVQFTEEGFVS*RRRVGEELTQDTRD Trigger: ATCGCGGGTGTCCTGAGTCAGCTCCTCCCCCACTCTTCTCCGCCATGATACGAACCCCTCCTCTGTGAACTGAACATCTCTCCTTGGCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR CCA 90 bp | TCAAACCACAGATCCTATCCAGCCAAAAATGTCTCTTGGGAATCCTaGAAGCCAAGGAGAGATGTTCAGTTCACAGAGGAGGGGTTCGTA | + |
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Preference number: 1 (lower is better) Translates to: SNHRSYPAKNVSWES*KPRRDVQFTEEGFV Trigger: TACGAACCCCTCCTCTGTGAACTGAACATCTCTCCTTGGCTTCCAGGATTCCCAAGAGACATTTTTGGCTGGATAGGATCTGTGGTTTGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR CCA 90 bp | TCTTTTATTTCAAACCACAGATCCTATCCAGCCAAAAATGTCTCTTaGGAATCCTGGAAGCCAAGGAGAGATGTTCAGTTCACAGAGGAG | + |
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Preference number: 1 (lower is better) Translates to: SFISNHRSYPAKNVS*ESWKPRRDVQFTEE Trigger: CTCCTCTGTGAACTGAACATCTCTCCTTGGCTTCCAGGATTCCCAAGAGACATTTTTGGCTGGATAGGATCTGTGGTTTGAAATAAAAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR-3UTR CCA 90 bp | TGTTCAGTTCACAGAGGAGGGGTTCGTATCATGGCGGAGAAGAGTGGGGGAGGAAGCCGTCAGGCATGGTaGGCAAGCCTGAGCTGGGGC | + |
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Preference number: 2 (lower is better) Translates to: CSVHRGGVRIMAEKSGGGSRQAW*ASLSWG Trigger: GCCCCAGCTCAGGCTTGCCCACCATGCCTGACGGCT...TCCTCCCCCACTCTTCTCCGCCATGATACGAACCCCTCCTCTGTGAACTGAACA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR-3UTR GCA 90 bp | TTCAGTTCACAGAGGAGGGGTTCGTATCATGGCGGAGAAGAGTGGGGGAGGAGCGACCCTGGGCAGGTCTaGGTTTGTGTCCATGTGCAC | + |
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Preference number: 2 (lower is better) Translates to: FSSQRRGSYHGGEEWGRSDPGQV*VCVHVH Trigger: GTGCACATGGACACAAACGCAGACCTGCCCAGGGTC...GCTCCTCCCCCACTCTTCTCCGCCATGATACGAACCCCTCCTCTGTGAACTGAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR-3UTR GCA 90 bp | GAGGAGGGGTTCGTATCATGGCGGAGAAGAGTGGGGGAGGAGCTGACTCAGGACGCCCTTTCATATACCTaGTGGCCTGCTTCCTCTGAC | + |
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Preference number: 2 (lower is better) Translates to: EEGFVSWRRRVGEELTQDALSYT*WPASSD Trigger: GTCAGAGGAAGCAGGCCAGCAGGTATATGAAAGGGC...GTCCTGAGTCAGCTCCTCCCCCACTCTTCTCCGCCATGATACGAACCCCTCCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR-3UTR TCA 90 bp | AGCCAAAAATGTCTCTTGGGAATCCTGGAAGCCAAGGAGAGATGTTCAGTTCACGAGTGGGGGAGGAGCTaGCTCAGGACACCCGCGATG | + |
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Preference number: 2 (lower is better) Translates to: SQKCLLGILEAKERCSVHEWGRS*LRTPAM Trigger: CATCGCGGGTGTCCTGAGTCAGCTCCTCCCCCACTC...GTGAACTGAACATCTCTCCTTGGCTTCCAGGATTCCCAAGAGACATTTTTGGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR-3UTR TCA 90 bp | TTTCAAACCACAGATCCTATCCAGCCAAAAATGTCTCTTGGGAATCCTGGAAGCAGGTCAGGGCAGAGGTaGAACTCCCTCCTCACCTCC | + |
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Preference number: 2 (lower is better) Translates to: FQTTDPIQPKMSLGNPGSRSGQR*NSLLTS Trigger: GGAGGTGAGGAGGGAGTTTCACCTCTGCCCTGACCT...GCTTCCAGGATTCCCAAGAGACATTTTTGGCTGGATAGGATCTGTGGTTTGAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR-3UTR GCA 90 bp | ACAGATCCTATCCAGCCAAAAATGTCTCTTGGGAATCCTGGAAGCCAAGGAGAGCGCGATGCTCAGAACTaGAGAATGAGAACAGGCTGT | + |
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Preference number: 2 (lower is better) Translates to: TDPIQPKMSLGNPGSQGERDAQN*RMRTGC Trigger: ACAGCCTGTTCTCATTCTGCAGTTCTGAGCATCGCG...CTCTCCTTGGCTTCCAGGATTCCCAAGAGACATTTTTGGCTGGATAGGATCTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR-3UTR CCA 90 bp | CCAAAAATGTCTCTTGGGAATCCTGGAAGCCAAGGAGAGATGTTCAGTTCACAGCTTTCATATACCTGCTaGCCTGCTTCCTCTGACCCT | + |
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Preference number: 2 (lower is better) Translates to: PKMSLGNPGSQGEMFSSQLSYTC*PASSDP Trigger: AGGGTCAGAGGAAGCAGGCCAGCAGGTATATGAAAG...CTGTGAACTGAACATCTCTCCTTGGCTTCCAGGATTCCCAAGAGACATTTTTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR GCA 72 bp | CTGGGGCAGGCACGGAGGAGGGCCCTTTCATATACCTaGTGGCCTGCTTCCTCTGACCCTGGGCAGGTCTGC | + |
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Preference number: 3 (lower is better) Translates to: LGQARRRALSYT*WPASSDPGQVC Trigger: GCAGACCTGCCCAGGGTCAGAGGAAGCAGGCCAGCAGGTATATGAAAGGGCCCTCCTCCGTGCCTGCCCCAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR CCA 72 bp | GGGCAGGCACGGAGGAGGGCCCTTTCATATACCTGCTaGCCTGCTTCCTCTGACCCTGGGCAGGTCTGCGTT | + |
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Preference number: 3 (lower is better) Translates to: GQARRRALSYTC*PASSDPGQVCV Trigger: AACGCAGACCTGCCCAGGGTCAGAGGAAGCAGGCCAGCAGGTATATGAAAGGGCCCTCCTCCGTGCCTGCCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR TCA 72 bp | GGTTCGTATCATGGCGGAGAAGAGTGGGGGAGGAGCTaGCTCAGGACACCCGCGATGCTCAGAACTGCAGAA | + |
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Preference number: 3 (lower is better) Translates to: GSYHGGEEWGRS*LRTPAMLRTAE Trigger: TTCTGCAGTTCTGAGCATCGCGGGTGTCCTGAGTCAGCTCCTCCCCCACTCTTCTCCGCCATGATACGAACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR GCA 72 bp | AAGAGTGGGGGAGGAGCTGACTCAGGACACCCGCGATaGTCAGAACTGCAGAATGAGAACAGGCTGTTCCCG | + |
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Preference number: 3 (lower is better) Translates to: KSGGGADSGHPR*SELQNENRLFP Trigger: CGGGAACAGCCTGTTCTCATTCTGCAGTTCTGAGCATCGCGGGTGTCCTGAGTCAGCTCCTCCCCCACTCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR GCA 72 bp | CCTCTGACCCTGGGCAGGTCTGCGTTTGTGTCCATGTaGACTGTTTGTAGAGGAGCTCAGAGGGAGAGACAC | + |
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Preference number: 3 (lower is better) Translates to: PLTLGRSAFVSM*TVCRGAQRERH Trigger: GTGTCTCTCCCTCTGAGCTCCTCTACAAACAGTGCACATGGACACAAACGCAGACCTGCCCAGGGTCAGAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR GCA 72 bp | GAGGAGCTGACTCAGGACACCCGCGATGCTCAGAACTaGAGAATGAGAACAGGCTGTTCCCGGAAGCTTTCT | + |
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Preference number: 3 (lower is better) Translates to: EELTQDTRDAQN*RMRTGCSRKLS Trigger: AGAAAGCTTCCGGGAACAGCCTGTTCTCATTCTGCAGTTCTGAGCATCGCGGGTGTCCTGAGTCAGCTCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR CCA 72 bp | AGAGATGTTCAGTTCACAGAGGAGGGGTTCGTATCATaGCGGAGAAGAGTGGGGGAGGAGCTGACTCAGGAC | + |
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Preference number: 3 (lower is better) Translates to: RDVQFTEEGFVS*RRRVGEELTQD Trigger: GTCCTGAGTCAGCTCCTCCCCCACTCTTCTCCGCCATGATACGAACCCCTCCTCTGTGAACTGAACATCTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR TCA 72 bp | GAGAGACACGTGAGAGACAAGAGGTCAGGGCAGAGGTaGAACTCCCTCCTCACCTCCGAAAGACTCTGGTTT | + |
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Preference number: 3 (lower is better) Translates to: ERHVRDKRSGQR*NSLLTSERLWF Trigger: AAACCAGAGTCTTTCGGAGGTGAGGAGGGAGTTTCACCTCTGCCCTGACCTCTTGTCTCTCACGTGTCTCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| 3UTR CCA 72 bp | TCAAACCACAGATCCTATCCAGCCAAAAATGTCTCTTaGGAATCCTGGAAGCCAAGGAGAGATGTTCAGTTC | + |
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Preference number: 3 (lower is better) Translates to: SNHRSYPAKNVS*ESWKPRRDVQF Trigger: GAACTGAACATCTCTCCTTGGCTTCCAGGATTCCCAAGAGACATTTTTGGCTGGATAGGATCTGTGGTTTGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS-3UTR CCA 90 bp | ATGTTCAGTTCACAGAGGAGGGGTTCGTATCATGGCGGAGAAGAGTGGGGGAGGGTGGTGCTCCAGGTGTaGACTCAGCACGGCCCAGTG | + |
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Preference number: 4 (lower is better) Translates to: MFSSQRRGSYHGGEEWGRVVLQV*TQHGPV Trigger: CACTGGGCCGTGCTGAGTCCACACCTGGAGCACCAC...CCTCCCCCACTCTTCTCCGCCATGATACGAACCCCTCCTCTGTGAACTGAACAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS-3UTR GCA 90 bp | GACTCAGGACACCCGCGATGCTCAGAACTGCAGAATGAGAACAGGCTGTTCCCGCTCTTGTCTTTGTTGTaGACGGCAACCCGAGCGGTG | + |
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Preference number: 4 (lower is better) Translates to: DSGHPRCSELQNENRLFPLLSLL*TATRAV Trigger: CACCGCTCGGGTTGCCGTGCACAACAAAGACAAGAG...CGGGAACAGCCTGTTCTCATTCTGCAGTTCTGAGCATCGCGGGTGTCCTGAGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS-3UTR TCA 90 bp | TGTTCAGTTCACAGAGGAGGGGTTCGTATCATGGCGGAGAAGAGTGGGGGAGGAGGCAATGGCCGCTGCTaGGATGCTGTACTCCTTTTG | + |
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Preference number: 4 (lower is better) Translates to: CSVHRGGVRIMAEKSGGGGNGRC*DAVLLL Trigger: CAAAAGGAGTACAGCATCTCAGCAGCGGCCATTGCC...TCCTCCCCCACTCTTCTCCGCCATGATACGAACCCCTCCTCTGTGAACTGAACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS-3UTR GCA 90 bp | CATATACCTGCTGGCCTGCTTCCTCTGACCCTGGGCAGGTCTGCGTTTGTGTCCGATGAGGCAGAGCCCTaGGAAGGCATAAAACATGGA | + |
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Preference number: 4 (lower is better) Translates to: HIPAGLLPLTLGRSAFVSDEAEP*EGIKHG Trigger: TCCATGTTTTATGCCTTCGCAGGGCTCTGCCTCATC...GGACACAAACGCAGACCTGCCCAGGGTCAGAGGAAGCAGGCCAGCAGGTATATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS-3UTR CCA 90 bp | TCATATACCTGCTGGCCTGCTTCCTCTGACCCTGGGCAGGTCTGCGTTTGTGTCCGAAGGCATAAAACATaGATGCTGGCCTCAGCAGGT | + |
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Preference number: 4 (lower is better) Translates to: SYTCWPASSDPGQVCVCVRRHKT*MLASAG Trigger: ACCTGCTGAGGCCAGCATCCATGTTTTATGCCTTCG...GACACAAACGCAGACCTGCCCAGGGTCAGAGGAAGCAGGCCAGCAGGTATATGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS-3UTR TCA 90 bp | AGCCAAAAATGTCTCTTGGGAATCCTGGAAGCCAAGGAGAGATGTTCAGTTCACGATTCCCAGGGGTTCTaGGGCATCCGAGGCAGGGAG | + |
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Preference number: 4 (lower is better) Translates to: SQKCLLGILEAKERCSVHDSQGF*GIRGRE Trigger: CTCCCTGCCTCGGATGCCTCAGAACCCCTGGGAATC...GTGAACTGAACATCTCTCCTTGGCTTCCAGGATTCCCAAGAGACATTTTTGGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS-3UTR TCA 90 bp | CATATACCTGCTGGCCTGCTTCCTCTGACCCTGGGCAGGTCTGCGTTTGTGTCCACTCCTTTTGAGTGGTaGATTCAAAGATTTCCGAGC | + |
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Preference number: 4 (lower is better) Translates to: HIPAGLLPLTLGRSAFVSTPFEW*IQRFPS Trigger: GCTCGGAAATCTTTGAATTCACCACTCAAAAGGAGT...GGACACAAACGCAGACCTGCCCAGGGTCAGAGGAAGCAGGCCAGCAGGTATATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS-3UTR TCA 90 bp | CCTGCTGGCCTGCTTCCTCTGACCCTGGGCAGGTCTGCGTTTGTGTCCATGTGCATGCTGTACTCCTTTTaGGTGGTGAATTCAAAGATT | + |
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Preference number: 4 (lower is better) Translates to: PAGLLPLTLGRSAFVSMCMLYSF*VVNSKI Trigger: AATCTTTGAATTCACCACTCAAAAGGAGTACAGCAT...GCACATGGACACAAACGCAGACCTGCCCAGGGTCAGAGGAAGCAGGCCAGCAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS-3UTR GCA 90 bp | AGAACAGGCTGTTCCCGGAAGCTTTCTAAAGATGACCAGACCAGATCGTCACAGATACGCTTCACCGACTaGCTCATGACCTCCACGGAG | + |
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Preference number: 4 (lower is better) Translates to: RTGCSRKLSKDDQTRSSQIRFTD*LMTSTE Trigger: CTCCGTGGAGGTCATGAGGCAGTCGGTGAAGCGTAT...CTGTGACGATCTGGTCTGGTCATCTTTAGAAAGCTTCCGGGAACAGCCTGTTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS-3UTR CCA 90 bp | ATGAGAACAGGCTGTTCCCGGAAGCTTTCTAAAGATGACCAGACCAGATCGTCATTCCGAGCTCTCCCCTaGGTTGAAGTGCCTGAAGTA | + |
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Preference number: 4 (lower is better) Translates to: MRTGCSRKLSKDDQTRSSFRALP*VEVPEV Trigger: TACTTCAGGCACTTCAACCCAGGGGAGAGCTCGGAA...TGACGATCTGGTCTGGTCATCTTTAGAAAGCTTCCGGGAACAGCCTGTTCTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS-3UTR TCA 90 bp | CCGAGATCTTTTATTTCAAACCACAGATCCTATCCAGCCAAAAATGTCTCTTGGCCCCGCCCACCAGGATaGAGAAGAGGGTCACACGAA | + |
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Preference number: 4 (lower is better) Translates to: PRSFISNHRSYPAKNVSWPRPPG*RRGSHE Trigger: TTCGTGTGACCCTCTTCTTCATCCTGGTGGGCGGGG...CCAAGAGACATTTTTGGCTGGATAGGATCTGTGGTTTGAAATAAAAGATCTCGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS-3UTR GCA 90 bp | ACAGATCCTATCCAGCCAAAAATGTCTCTTGGGAATCCTGGAAGCCAAGGAGAGCCCGAAGGACAGAAATaGGCAGATGGAACCCACAAT | + |
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Preference number: 4 (lower is better) Translates to: TDPIQPKMSLGNPGSQGEPEGQK*ADGTHN Trigger: ATTGTGGGTTCCATCTGCGCATTTCTGTCCTTCGGG...CTCTCCTTGGCTTCCAGGATTCCCAAGAGACATTTTTGGCTGGATAGGATCTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS-3UTR GCA 90 bp | ACAGATCCTATCCAGCCAAAAATGTCTCTTGGGAATCCTGGAAGCCAAGGAGAGCCTGATGGTGTGACGTaGTCACAACTCTTGTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: TDPIQPKMSLGNPGSQGEPDGVT*SQLLSL Trigger: CAAAGACAAGAGTTGTGAGCACGTCACACCATCAGG...CTCTCCTTGGCTTCCAGGATTCCCAAGAGACATTTTTGGCTGGATAGGATCTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS CCA 90 bp | GCCAAAGTGGGCTGCCTCGCACGTTTCATTGTGGTGCTCCAGGTGTaGACTCAGCACGGCCCAGTGGTCAGTCACCACGGCCACCATGGC | + |
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Preference number: 5 (lower is better) Translates to: AKVGCLARFIVVLQV*TQHGPVVSHHGHHG Trigger: GCCATGGTGGCCGTGGTGACTGACCACTGGGCCGTGCTGAGTCCACACCTGGAGCACCACAATGAAACGTGCGAGGCAGCCCACTTTGGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS GCA 90 bp | CACGGCAACCCGAGCGGTGCAGATCCTCCAGAGGCCAAAGTGGGCTaGCTCGCACGTTTCATTGTGGTGCTCCAGGTGTGGACTCAGCAC | + |
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Preference number: 5 (lower is better) Translates to: HGNPSGADPPEAKVG*LARFIVVLQVWTQH Trigger: GTGCTGAGTCCACACCTGGAGCACCACAATGAAACGTGCGAGGCAGCCCACTTTGGCCTCTGGAGGATCTGCACCGCTCGGGTTGCCGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS GCA 90 bp | ATCCTCCAGAGGCCAAAGTGGGCTGCCTCGCACGTTTCATTGTGGTaGTCCAGGTGTGGACTCAGCACGGCCCAGTGGTCAGTCACCACG | + |
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Preference number: 5 (lower is better) Translates to: ILQRPKWAASHVSLW*SRCGLSTAQWSVTT Trigger: CGTGGTGACTGACCACTGGGCCGTGCTGAGTCCACACCTGGAGCACCACAATGAAACGTGCGAGGCAGCCCACTTTGGCCTCTGGAGGAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS CCA 90 bp | CAGATCCTCCAGAGGCCAAAGTGGGCTGCCTCGCACGTTTCATTGTaGTGCTCCAGGTGTGGACTCAGCACGGCCCAGTGGTCAGTCACC | + |
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Preference number: 5 (lower is better) Translates to: QILQRPKWAASHVSL*CSRCGLSTAQWSVT Trigger: GGTGACTGACCACTGGGCCGTGCTGAGTCCACACCTGGAGCACCACAATGAAACGTGCGAGGCAGCCCACTTTGGCCTCTGGAGGATCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS CCA 90 bp | TTGTGCACGGCAACCCGAGCGGTGCAGATCCTCCAGAGGCCAAAGTaGGCTGCCTCGCACGTTTCATTGTGGTGCTCCAGGTGTGGACTC | + |
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Preference number: 5 (lower is better) Translates to: LCTATRAVQILQRPK*AASHVSLWCSRCGL Trigger: GAGTCCACACCTGGAGCACCACAATGAAACGTGCGAGGCAGCCCACTTTGGCCTCTGGAGGATCTGCACCGCTCGGGTTGCCGTGCACAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS GCA 90 bp | TCTATCCAGACCGTGTCCTCGCTGTCAATCATACGCTTCACCGACTaGCTCATGACCTCCACGGAGACGATGAGGCAGAGCCCTGCGAAG | + |
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Preference number: 5 (lower is better) Translates to: SIQTVSSLSIIRFTD*LMTSTETMRQSPAK Trigger: CTTCGCAGGGCTCTGCCTCATCGTCTCCGTGGAGGTCATGAGGCAGTCGGTGAAGCGTATGATTGACAGCGAGGACACGGTCTGGATAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS-3UTR CAA 90 bp | TGCACTGTTTGTAGAGGAGCTCAGAGGGAGAGACACGTGAGAGACAAGAGGTCAGCCTCGCACGTTTCATaGTGGTGCTCCAGGTGTGGA | + |
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Preference number: 5 (lower is better) Translates to: CTVCRGAQRERHVRDKRSASHVS*WCSRCG Trigger: TCCACACCTGGAGCACCACAATGAAACGTGCGAGGC...TGACCTCTTGTCTCTCACGTGTCTCTCCCTCTGAGCTCCTCTACAAACAGTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS GCA 90 bp | TGCTGGCCTCAGCAGGTAATCACGCTTATTCCCGAAGGACAGAAATaGGCAGATGGAACCCACAATGATGAAGCCGAGGCTGAAGATGGC | + |
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Preference number: 5 (lower is better) Translates to: CWPQQVITLIPEGQK*ADGTHNDEAEAEDG Trigger: GCCATCTTCAGCCTCGGCTTCATCATTGTGGGTTCCATCTGCGCATTTCTGTCCTTCGGGAATAAGCGTGATTACCTGCTGAGGCCAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS CCA 72 bp | TTGTGGTGCTCCAGGTGTGGACTCAGCACGGCCCAGTaGTCAGTCACCACGGCCACCATGGCGAGCACCCCG | + |
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Preference number: 6 (lower is better) Translates to: LWCSRCGLSTAQ*SVTTATMASTP Trigger: CGGGGTGCTCGCCATGGTGGCCGTGGTGACTGACCACTGGGCCGTGCTGAGTCCACACCTGGAGCACCACAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS CCA 72 bp | GGCTGCCTCGCACGTTTCATTGTGGTGCTCCAGGTGTaGACTCAGCACGGCCCAGTGGTCAGTCACCACGGC | + |
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Preference number: 6 (lower is better) Translates to: GCLARFIVVLQV*TQHGPVVSHHG Trigger: GCCGTGGTGACTGACCACTGGGCCGTGCTGAGTCCACACCTGGAGCACCACAATGAAACGTGCGAGGCAGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS CCA 72 bp | GCAACCCGAGCGGTGCAGATCCTCCAGAGGCCAAAGTaGGCTGCCTCGCACGTTTCATTGTGGTGCTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: ATRAVQILQRPK*AASHVSLWCSR Trigger: CCTGGAGCACCACAATGAAACGTGCGAGGCAGCCCACTTTGGCCTCTGGAGGATCTGCACCGCTCGGGTTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS GCA 72 bp | AGGCCAAAGTGGGCTGCCTCGCACGTTTCATTGTGGTaGTCCAGGTGTGGACTCAGCACGGCCCAGTGGTCA | + |
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Preference number: 6 (lower is better) Translates to: RPKWAASHVSLW*SRCGLSTAQWS Trigger: TGACCACTGGGCCGTGCTGAGTCCACACCTGGAGCACCACAATGAAACGTGCGAGGCAGCCCACTTTGGCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS GCA 72 bp | ACCGTGTCCTCGCTGTCAATCATACGCTTCACCGACTaGCTCATGACCTCCACGGAGACGATGAGGCAGAGC | + |
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Preference number: 6 (lower is better) Translates to: TVSSLSIIRFTD*LMTSTETMRQS Trigger: GCTCTGCCTCATCGTCTCCGTGGAGGTCATGAGGCAGTCGGTGAAGCGTATGATTGACAGCGAGGACACGGT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS TCA 72 bp | AGAGCAGGAGGAACAGCCCACCGAGGAAGAGCAAGATaGACGCGGCACATGCACAGGCGAAAGACCACGAAT | + |
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Preference number: 6 (lower is better) Translates to: RAGGTAHRGRAR*TRHMHRRKTTN Trigger: ATTCGTGGTCTTTCGCCTGTGCATGTGCCGCGTTCATCTTGCTCTTCCTCGGTGGGCTGTTCCTCCTGCTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS GCA 72 bp | GATGAGGCAGAGCCCTGCGAAGGCATAAAACATGGATaGTGGCCTCAGCAGGTAATCACGCTTATTCCCGAA | + |
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Preference number: 6 (lower is better) Translates to: DEAEPCEGIKHG*WPQQVITLIPE Trigger: TTCGGGAATAAGCGTGATTACCTGCTGAGGCCAGCATCCATGTTTTATGCCTTCGCAGGGCTCTGCCTCATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS TCA 72 bp | GATGAAGCCGAGGCTGAAGATGGCAATGGCCGCTGCTaGGATGCTGTACTCCTTTTGAGTGGTGAATTCAAA | + |
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Preference number: 6 (lower is better) Translates to: DEAEAEDGNGRC*DAVLLLSGEFK Trigger: TTTGAATTCACCACTCAAAAGGAGTACAGCATCTCAGCAGCGGCCATTGCCATCTTCAGCCTCGGCTTCATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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| CDS CCA 72 bp | TTGAGTGGTGAATTCAAAGATTTCCGAGCTCTCCCCTaGGTTGAAGTGCCTGAAGTAGGAGCAGTTCTTTTC | + |
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Preference number: 6 (lower is better) Translates to: LSGEFKDFRALP*VEVPEVGAVLF Trigger: GAAAAGAACTGCTCCTACTTCAGGCACTTCAACCCAGGGGAGAGCTCGGAAATCTTTGAATTCACCACTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021065.6 |
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