RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CACNB4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000017412

Ensembl transcript IDs: ENSMUST00000078324.7, ENSMUST00000102760.10, ENSMUST00000102761.9, ENSMUST00000178799.8

Found 368 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAAAGTCAGAGACTGGCTGGACTGAGGGATAGATCCTCAGCTGGCTaGGCTGCTAAGCCGTGTCAGGGTGCAGCAGGAAGGACAGCTTCC +
Preference number: 1 (lower is better)
Translates to: QSQRLAGLRDRSSAG*AAKPCQGAAGRTAS
Trigger: GGAAGCTGTCCTTCCTGCTGCACCCTGACACGGCTTAGCAGCTCAGCCAGCTGAGGATCTATCCCTCAGTCCAGCCAGTCTCTGACTTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CCA 90 bp ACAGCTTCCCATCCAGAGCCAATCACAGCAGTATCCCGGGAGCTCTaGCCACATCTCTGCTGGCTGACTGCAGAGCTCCAGATGTGTGTA +
Preference number: 1 (lower is better)
Translates to: TASHPEPITAVSREL*PHLCWLTAELQMCV
Trigger: TACACACATCTGGAGCTCTGCAGTCAGCCAGCAGAGATGTGGCCAGAGCTCCCGGGATACTGCTGTGATTGGCTCTGGATGGGAAGCTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR GCA 90 bp CACAGCAGTATCCCGGGAGCTCTGGCCACATCTCTGCTGGCTGACTaGAGAGCTCCAGATGTGTGTAGTTGTATGCAGACCGACTACAGA +
Preference number: 1 (lower is better)
Translates to: HSSIPGALATSLLAD*RAPDVCSCMQTDYR
Trigger: TCTGTAGTCGGTCTGCATACAACTACACACATCTGGAGCTCTGCAGTCAGCCAGCAGAGATGTGGCCAGAGCTCCCGGGATACTGCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR GCA 90 bp CCAGAGCCAATCACAGCAGTATCCCGGGAGCTCTGGCCACATCTCTaGTGGCTGACTGCAGAGCTCCAGATGTGTGTAGTTGTATGCAGA +
Preference number: 1 (lower is better)
Translates to: PEPITAVSRELWPHL*WLTAELQMCVVVCR
Trigger: TCTGCATACAACTACACACATCTGGAGCTCTGCAGTCAGCCAGCAGAGATGTGGCCAGAGCTCCCGGGATACTGCTGTGATTGGCTCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR TCA 90 bp AGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTaGGGGATAGATCCTCAGCTGGCTGAGCTGCTAAGCCGTGTCAGG +
Preference number: 1 (lower is better)
Translates to: RAKTFILSKVRDWLD*GIDPQLAELLSRVR
Trigger: CCTGACACGGCTTAGCAGCTCAGCCAGCTGAGGATCTATCCCTCAGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR GCA 90 bp CATCTCTGCTGGCTGACTGCAGAGCTCCAGATGTGTGTAGTTGTATaGAGACCGACTACAGAAGAAACAACACCTCGTTCTCCATTCCCC +
Preference number: 1 (lower is better)
Translates to: HLCWLTAELQMCVVV*RPTTEETTPRSPFP
Trigger: GGGGAATGGAGAACGAGGTGTTGTTTCTTCTGTAGTCGGTCTGCATACAACTACACACATCTGGAGCTCTGCAGTCAGCCAGCAGAGATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CCA 90 bp GGTGCAATTACATGGGAGTTGCATACAATGCAGATCCTTACCCAGTaGCCACAGCATGCCCTTAGTACCCCTAGAAGTCAAGGATCAACC +
Preference number: 1 (lower is better)
Translates to: GAITWELHTMQILTQ*PQHALSTPRSQGST
Trigger: GGTTGATCCTTGACTTCTAGGGGTACTAAGGGCATGCTGTGGCCACTGGGTAAGGATCTGCATTGTATGCAACTCCCATGTAATTGCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR GCA 90 bp TGGGAAAAACATAAACTTTCGAACATCCAAAGGCCAGAGGAGCCCTaGGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGAAGAAAC +
Preference number: 1 (lower is better)
Translates to: WEKHKLSNIQRPEEP*ELTSCAICYQRRRN
Trigger: GTTTCTTCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCTTTGGATGTTCGAAAGTTTATGTTTTTCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR GCA 90 bp GTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTAGTATaGAGGCAGGGCAAGAAAGGCCCCTGCGTAAACACAGATCGAGCT +
Preference number: 1 (lower is better)
Translates to: VYGIHTDFHEVYVVV*RQGKKGPCVNTDRA
Trigger: AGCTCGATCTGTGTTTACGCAGGGGCCTTTCTTGCCCTGCCTGCATACTACTACATACACTTCATGGAAATCAGTGTGGATTCCATACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR TCA 90 bp GCCCACCCACACAGCAGATACTGTGCTGTGCTTGCCAAATTAAGATaGCTGGTTAATAGCAGTACTATGGCAAATTGTCAACAGATGATG +
Preference number: 1 (lower is better)
Translates to: AHPHSRYCAVLAKLR*LVNSSTMANCQQMM
Trigger: CATCATCTGTTGACAATTTGCCATAGTACTGCTATTAACCAGTCATCTTAATTTGGCAAGCACAGCACAGTATCTGCTGTGTGGGTGGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR TCA 90 bp GCTCTGTTAAATGTCTTAACAGAAAATTCTGTACGCCTCGATGGATaGCACTCGGGCTTCACAAGCCTGTATCAGATGGTAGCTTGTCAA +
Preference number: 1 (lower is better)
Translates to: ALLNVLTENSVRLDG*HSGFTSLYQMVACQ
Trigger: TTGACAAGCTACCATCTGATACAGGCTTGTGAAGCCCGAGTGTCATCCATCGAGGCGTACAGAATTTTCTGTTAAGACATTTAACAGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR TCA 90 bp GCTTTGCTTTGTTCCCTAGGATGGCTTCTTGTTAAACTCACGCCATaGGAAGCTGTGGATCGATTTCAAGAAAACCTAGCTGACGTTGAA +
Preference number: 1 (lower is better)
Translates to: ALLCSLGWLLVKLTP*EAVDRFQENLADVE
Trigger: TTCAACGTCAGCTAGGTTTTCTTGAAATCGATCCACAGCTTCTCATGGCGTGAGTTTAACAAGAAGCCATCCTAGGGAACAAAGCAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CCA 90 bp TACAGCTCTGTTAAATGTCTTAACAGAAAATTCTGTACGCCTCGATaGATGACACTCGGGCTTCACAAGCCTGTATCAGATGGTAGCTTG +
Preference number: 1 (lower is better)
Translates to: YSSVKCLNRKFCTPR*MTLGLHKPVSDGSL
Trigger: CAAGCTACCATCTGATACAGGCTTGTGAAGCCCGAGTGTCATCCATCGAGGCGTACAGAATTTTCTGTTAAGACATTTAACAGAGCTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR GCA 90 bp TGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGTaGACTGTCTTTTACCACAGCTCCTTTGTCTTCATTCCCTTTCCA +
Preference number: 1 (lower is better)
Translates to: CASAFWDMVIESRRV*TVFYHSSFVFIPFP
Trigger: TGGAAAGGGAATGAAGACAAAGGAGCTGTGGTAAAAGACAGTGCACACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CCA 90 bp GACTTCAAGGCATTAGTAGAAAGACACTTTATGTCTAGCTCAAATTaGGTCTTTAGAAAACACATGCATGTGTCATTTCAGAGGCAAGCC +
Preference number: 1 (lower is better)
Translates to: DFKALVERHFMSSSN*VFRKHMHVSFQRQA
Trigger: GGCTTGCCTCTGAAATGACACATGCATGTGTTTTCTAAAGACCCAATTTGAGCTAGACATAAAGTGTCTTTCTACTAATGCCTTGAAGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR TCA 90 bp TCTGAGCCTTTACAAAGAGAGGAGGAATCTTATCTCTTCGTCATTTaGAGGAGAGAAGCTTACAGAAGGAAGATGAAAGATATGCAAAAT +
Preference number: 1 (lower is better)
Translates to: SEPLQREEESYLFVI*RREAYRRKMKDMQN
Trigger: ATTTTGCATATCTTTCATCTTCCTTCTGTAAGCTTCTCTCCTTCAAATGACGAAGAGATAAGATTCCTCCTCTCTTTGTAAAGGCTCAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR GCA 90 bp CCTGATTCTATCATCATTATCATTTCAAAGAAAAGGACTGTTGTTTaGCAGGTAGACACAGCTGGAGTAAGTAACTTAACAGTTACAGTG +
Preference number: 1 (lower is better)
Translates to: PDSIIIIISKKRTVV*QVDTAGVSNLTVTV
Trigger: CACTGTAACTGTTAAGTTACTTACTCCAGCTGTGTCTACCTGGCAAACAACAGTCCTTTTCTTTGAAATGATAATGATGATAGAATCAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGAGTATCCCGGGAGCTCTaGCCACATCTCTGCTGGCTG +
Preference number: 2 (lower is better)
Translates to: RPEEPCELTSCAICYQRRVSREL*PHLCWL
Trigger: CAGCCAGCAGAGATGTGGCCAGAGCTCCCGGGATAC...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGATCCATTCCCCGGAACTaGGCGTGCTTGGGCTTCACT +
Preference number: 2 (lower is better)
Translates to: RPEEPCELTSCAICYQRRSIPRN*ACLGFT
Trigger: AGTGAAGCCCAAGCACGCCCAGTTCCGGGGAATGGA...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCAGTATCCCGGGAGCTCTaGCCACATCTCTGCTGGCTG +
Preference number: 2 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPVSREL*PHLCWL
Trigger: CAGCCAGCAGAGATGTGGCCAGAGCTCCCGGGATAC...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGATCTCTGCTGGCTGACTaGAGAGCTCCAGATGTGTGT +
Preference number: 2 (lower is better)
Translates to: RPEEPCELTSCAICYQRRSLLAD*RAPDVC
Trigger: ACACACATCTGGAGCTCTGCAGTCAGCCAGCAGAGA...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCATGGCCACATCTCTGCTaGCTGACTGCAGAGCTCCAG +
Preference number: 2 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPWPHLC*LTAELQ
Trigger: CTGGAGCTCTGCAGTCAGCCAGCAGAGATGTGGCCA...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR TCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGACTCCGTCTTCCAGCATaGCATGGAAGAGCAAAAGAG +
Preference number: 2 (lower is better)
Translates to: RPEEPCELTSCAICYQRRLRLPA*HGRAKE
Trigger: CTCTTTTGCTCTTCCATGTCATGCTGGAAGACGGAG...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGAAAAAGGACTGTTGTTTaGCAGGTAGACACAGCTGGA +
Preference number: 2 (lower is better)
Translates to: RPEEPCELTSCAICYQRRKRTVV*QVDTAG
Trigger: TCCAGCTGTGTCTACCTGGCAAACAACAGTCCTTTT...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR TCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTCACATCTCTGCTGGCTaGCTGCAGAGCTCCAGATGT +
Preference number: 2 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFHISAG*LQSSRC
Trigger: ACATCTGGAGCTCTGCAGTCAGCCAGCAGAGATGTG...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR TCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGAATGGCAGATGATGGATaGGTGTTGTGCACAAATTAC +
Preference number: 2 (lower is better)
Translates to: RPEEPCELTSCAICYQRRMADDG*VLCTNY
Trigger: GTAATTTGTGCACAACACTCATCCATCATCTGCCAT...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGACTCTCTCTAATGGCATaGATTAAAACTGCCCTGCTT +
Preference number: 2 (lower is better)
Translates to: RPEEPCELTSCAICYQRRLSLMA*IKTALL
Trigger: AAGCAGGGCAGTTTTAATGCATGCCATTAGAGAGAG...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGAGGTTCCAACTGGAACTaGTCATTTGGAATTTCCTAC +
Preference number: 2 (lower is better)
Translates to: RPEEPCELTSCAICYQRRGSNWN*SFGISY
Trigger: GTAGGAAATTCCAAATGACCAGTTCCAGTTGGAACC...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR TCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGATATCTCTTCGTCATTTaGAGGAGAGAAGCTTACAGA +
Preference number: 2 (lower is better)
Translates to: RPEEPCELTSCAICYQRRYLFVI*RREAYR
Trigger: TCTGTAAGCTTCTCTCCTTCAAATGACGAAGAGATA...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR TCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGACCTTCCCTTCAAGGATaGAATGATGTAGTGATTTGT +
Preference number: 2 (lower is better)
Translates to: RPEEPCELTSCAICYQRRPSLQG*NDVVIC
Trigger: ACAAATCACTACATCATTTCATCCTTGAAGGGAAGG...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTGTATCCCGGGAGCTCTaGCCACATCTCTGCTGGCTG +
Preference number: 2 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTVSREL*PHLCWL
Trigger: CAGCCAGCAGAGATGTGGCCAGAGCTCCCGGGATAC...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGATGTGCCTCAGCATTTTaGGATATGGTCATTGAAAGT +
Preference number: 2 (lower is better)
Translates to: RPEEPCELTSCAICYQRRCASAF*DMVIES
Trigger: ACTTTCAATGACCATATCCCAAAATGCTGAGGCACA...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCACGCCATGAGAAGCTGTaGATCGATTTCAAGAAAACC +
Preference number: 2 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPRHEKL*IDFKKT
Trigger: GGTTTTCTTGAAATCGATCCACAGCTTCTCATGGCG...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGATTTGGTGCAATTACATaGGAGTTGCATACAATGCAG +
Preference number: 2 (lower is better)
Translates to: RPEEPCELTSCAICYQRRFGAIT*ELHTMQ
Trigger: CTGCATTGTATGCAACTCCCATGTAATTGCACCAAA...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR TCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGATTGTCAACTTCAAACTaGCTAACAGTACTGACTGAA +
Preference number: 2 (lower is better)
Translates to: RPEEPCELTSCAICYQRRLSTSN*LTVLTE
Trigger: TTCAGTCAGTACTGTTAGTCAGTTTGAAGTTGACAA...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR TCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTCTCCGTCTTCCAGCATaGCATGGAAGAGCAAAAGAG +
Preference number: 2 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFLRLPA*HGRAKE
Trigger: CTCTTTTGCTCTTCCATGTCATGCTGGAAGACGGAG...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR TCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCAATGGCAGATGATGGATaGGTGTTGTGCACAAATTAC +
Preference number: 2 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPMADDG*VLCTNY
Trigger: GTAATTTGTGCACAACACTCATCCATCATCTGCCAT...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp CTGACACACTGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGCTCTGGCCACATCTCTaGTGGCTGACTGCAGAGCTC +
Preference number: 2 (lower is better)
Translates to: LTHCASAFWDMVIESRRVLWPHL*WLTAEL
Trigger: GAGCTCTGCAGTCAGCCAGCAGAGATGTGGCCAGAG...CACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCACTCTCTCTAATGGCATaGATTAAAACTGCCCTGCTT +
Preference number: 2 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPLSLMA*IKTALL
Trigger: AAGCAGGGCAGTTTTAATGCATGCCATTAGAGAGAG...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTTGGCCACATCTCTGCTaGCTGACTGCAGAGCTCCAG +
Preference number: 2 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTWPHLC*LTAELQ
Trigger: CTGGAGCTCTGCAGTCAGCCAGCAGAGATGTGGCCA...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGAAGAGGGCAATTTGTATaGTGGTATTGTGTGTTCTTT +
Preference number: 2 (lower is better)
Translates to: RPEEPCELTSCAICYQRRRGQFV*WYCVFF
Trigger: AAAGAACACACAATACCACCATACAAATTGCCCTCT...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGACAATTGATTTCAACATaGTCTAGTAGACTTTCCAGT +
Preference number: 2 (lower is better)
Translates to: RPEEPCELTSCAICYQRRQLIST*SSRLSS
Trigger: ACTGGAAAGTCTACTAGAGCATGTTGAAATCAATTG...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGACTCTCTGCAATTAAATaGTTTAATGCGCACAAACAA +
Preference number: 2 (lower is better)
Translates to: RPEEPCELTSCAICYQRRLSAIK*FNAHKQ
Trigger: TTGTTTGTGCGCATTAAAGCATTTAATTGCAGAGAG...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGAGAAAATATACTAGCTTaGAAATCAAGGTTGCCTAGA +
Preference number: 2 (lower is better)
Translates to: RPEEPCELTSCAICYQRRENILA*KSRLPR
Trigger: TCTAGGCAACCTTGATTTGCAAGCTAGTATATTTTC...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCAAGAGTAATTTCTGAATaGTGTAGCTGTCTGCCCATA +
Preference number: 2 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPRVISE*CSCLPI
Trigger: TATGGGCAGACAGCTACAGCATTCAGAAATTACTCT...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGAATGTCTAGCTCAAATTaGGTCTTTAGAAAACACATG +
Preference number: 2 (lower is better)
Translates to: RPEEPCELTSCAICYQRRMSSSN*VFRKHM
Trigger: CATGTGTTTTCTAAAGACCCAATTTGAGCTAGACAT...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCAGAAGCAAAGTACTTGTaGAATAGGCATTTCCTAGAG +
Preference number: 2 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPEAKYL*NRHFLE
Trigger: CTCTAGGAAATGCCTATTCCACAAGTACTTTGCTTC...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCATGTGCCTCAGCATTTTaGGATATGGTCATTGAAAGT +
Preference number: 2 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPCASAF*DMVIES
Trigger: ACTTTCAATGACCATATCCCAAAATGCTGAGGCACA...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCATTTGGTGCAATTACATaGGAGTTGCATACAATGCAG +
Preference number: 2 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPFGAIT*ELHTMQ
Trigger: CTGCATTGTATGCAACTCCCATGTAATTGCACCAAA...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR TCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCAAAGGCAAAAACACTTTaGATACAACAGCTGTATCAG +
Preference number: 2 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPKAKTL*IQQLYQ
Trigger: CTGATACAGCTGTTGTATTCAAAGTGTTTTTGCCTT...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCATCTTTAGAAAACACATaGATGTGTCATTTCAGAGGC +
Preference number: 2 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPSLENT*MCHFRG
Trigger: GCCTCTGAAATGACACATGCATGTGTTTTCTAAAGA...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCACAATTACATGGGAGTTaGATACAATGCAGATCCTTA +
Preference number: 2 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPQLHGS*IQCRSL
Trigger: TAAGGATCTGCATTGTATGCAACTCCCATGTAATTG...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCTGGAACTGGTCATTTaGAATTTCCTACACGGGAAA +
Preference number: 2 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPLELVI*NFLHGK
Trigger: TTTCCCGTGTAGGAAATTCCAAATGACCAGTTCCAG...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTGAAAGTAGAAGAGTGTaGACTGTCTTTTACCACAGC +
Preference number: 2 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFESRRV*TVFYHS
Trigger: GCTGTGGTAAAAGACAGTGCACACTCTTCTACTTTC...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTTTCACTGACACACTGTaGCTCAGCATTTTGGGATAT +
Preference number: 2 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFFTDTL*LSILGY
Trigger: ATATCCCAAAATGCTGAGGCACAGTGTGTCAGTGAA...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTCTGGAACTGGTCATTTaGAATTTCCTACACGGGAAA +
Preference number: 2 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFLELVI*NFLHGK
Trigger: TTTCCCGTGTAGGAAATTCCAAATGACCAGTTCCAG...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACAGTATCCCGGGAGCTCTaGCCACATCTCTGCTGGCTG +
Preference number: 2 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTVSREL*PHLCWL
Trigger: CAGCCAGCAGAGATGTGGCCAGAGCTCCCGGGATAC...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CAA 90 bp TCTTTAAAGCCACTAAGCGGAGGGAGAACAAAGCATGCAGTACATTaGCATAGTGTATTTTCCCCAGCATGCCTTGTAGAACGCTACGCA +
Preference number: 2 (lower is better)
Translates to: SLKPLSGGRTKHAVH*HSVFSPACLVERYA
Trigger: TGCGTAGCGTTCTACAAGGCATGCTGGGGAAAATACACTATGCAAATGTACTGCATGCTTTGTTCTCCCTCCGCTTAGTGGCTTTAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR TCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTACTAACAGTACTGACTaGACAGAAGGCAAAAACACT +
Preference number: 2 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFTNSTD*TEGKNT
Trigger: AGTGTTTTTGCCTTCTGTTCAGTCAGTACTGTTAGT...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp AAAGCTGAACAGCAATCTATTCTAAATTTATACACCCAAGTGCACTCTCTGCAATCCATTCCCCGGAACTaGGCGTGCTTGGGCTTCACT +
Preference number: 2 (lower is better)
Translates to: KAEQQSILNLYTQVHSLQSIPRN*ACLGFT
Trigger: AGTGAAGCCCAAGCACGCCCAGTTCCGGGGAATGGA...TTGCAGAGAGTGCACTTGGGTGTATAAATTTAGAATAGATTGCTGTTCAGCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR TCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACACACATCTCTGCTGGCTaGCTGCAGAGCTCCAGATGT +
Preference number: 2 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTHISAG*LQSSRC
Trigger: ACATCTGGAGCTCTGCAGTCAGCCAGCAGAGATGTG...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTTCTTTAGAAAACACATaGATGTGTCATTTCAGAGGC +
Preference number: 2 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFSLENT*MCHFRG
Trigger: GCCTCTGAAATGACACATGCATGTGTTTTCTAAAGA...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTCAATTGATTTCAACATaGTCTAGTAGACTTTCCAGT +
Preference number: 2 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFQLIST*SSRLSS
Trigger: ACTGGAAAGTCTACTAGAGCATGTTGAAATCAATTG...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTATTCACTGACACACTGTaGCTCAGCATTTTGGGATAT +
Preference number: 2 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVFTDTL*LSILGY
Trigger: ATATCCCAAAATGCTGAGGCACAGTGTGTCAGTGAA...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTGAAAATATACTAGCTTaGAAATCAAGGTTGCCTAGA +
Preference number: 2 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFENILA*KSRLPR
Trigger: TCTAGGCAACCTTGATTTGCAAGCTAGTATATTTTC...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTACTGGAACTGGTCATTTaGAATTTCCTACACGGGAAA +
Preference number: 2 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVLELVI*NFLHGK
Trigger: TTTCCCGTGTAGGAAATTCCAAATGACCAGTTCCAG...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTATGTCTAGCTCAAATTaGGTCTTTAGAAAACACATG +
Preference number: 2 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFMSSSN*VFRKHM
Trigger: CATGTGTTTTCTAAAGACCCAATTTGAGCTAGACAT...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CAA 90 bp AAATTTCAGGCAGCCTCATTATCAGATAAGCAGGTTCATAACGGGTaGCACATACAGTCAAGACAGTGGTTTGGTGGGATTCAAGATATG +
Preference number: 2 (lower is better)
Translates to: KFQAASLSDKQVHNG*HIQSRQWFGGIQDM
Trigger: CATATCTTGAATCCCACCAAACCACTGTCTTGACTGTATGTGCAACCCGTTATGAACCTGCTTATCTGATAATGAGGCTGCCTGAAATTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CAA 90 bp TCATTGAAAGTAGAAGAGTGTGCACTGTCTTTTACCACAGCTCCTTaGTCTTCATTCCCTTTCCACGCCCCCATTCTCTACTATGAAATT +
Preference number: 2 (lower is better)
Translates to: SLKVEECALSFTTAP*SSFPFHAPILYYEI
Trigger: AATTTCATAGTAGAGAATGGGGGCGTGGAAAGGGAATGAAGACAAAGGAGCTGTGGTAAAAGACAGTGCACACTCTTCTACTTTCAATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR TCA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTACTAACAGTACTGACTaGACAGAAGGCAAAAACACT +
Preference number: 2 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTTNSTD*TEGKNT
Trigger: AGTGTTTTTGCCTTCTGTTCAGTCAGTACTGTTAGT...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR TCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTATATCTCTTCGTCATTTaGAGGAGAGAAGCTTACAGA +
Preference number: 2 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVYLFVI*RREAYR
Trigger: TCTGTAAGCTTCTCTCCTTCAAATGACGAAGAGATA...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR TCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTACCTTCCCTTCAAGGATaGAATGATGTAGTGATTTGT +
Preference number: 2 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVPSLQG*NDVVIC
Trigger: ACAAATCACTACATCATTTCATCCTTGAAGGGAAGG...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTAAGAGTAATTTCTGAATaGTGTAGCTGTCTGCCCATA +
Preference number: 2 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVRVISE*CSCLPI
Trigger: TATGGGCAGACAGCTACAGCATTCAGAAATTACTCT...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp CTGACACACTGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGATACAGTCAAGACAGTaGTTTGGTGGGATTCAAGAT +
Preference number: 2 (lower is better)
Translates to: LTHCASAFWDMVIESRRVIQSRQ*FGGIQD
Trigger: ATCTTGAATCCCACCAAACCACTGTCTTGACTGTAT...CACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp CTGACACACTGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGGAAGCAAAGTACTTGTaGAATAGGCATTTCCTAGAG +
Preference number: 2 (lower is better)
Translates to: LTHCASAFWDMVIESRRVEAKYL*NRHFLE
Trigger: CTCTAGGAAATGCCTATTCCACAAGTACTTTGCTTC...CACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR TCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTAAAGGCAAAAACACTTTaGATACAACAGCTGTATCAG +
Preference number: 2 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVKAKTL*IQQLYQ
Trigger: CTGATACAGCTGTTGTATTCAAAGTGTTTTTGCCTT...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR TCA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTAAGGCAAAAACACTTTaGATACAACAGCTGTATCAG +
Preference number: 2 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTKAKTL*IQQLYQ
Trigger: CTGATACAGCTGTTGTATTCAAAGTGTTTTTGCCTT...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR TCA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTTTGTCAACTTCAAACTaGCTAACAGTACTGACTGAA +
Preference number: 2 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTLSTSN*LTVLTE
Trigger: TTCAGTCAGTACTGTTAGTCAGTTTGAAGTTGACAA...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTACAATTACATGGGAGTTaGATACAATGCAGATCCTTA +
Preference number: 2 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVQLHGS*IQCRSL
Trigger: TAAGGATCTGCATTGTATGCAACTCCCATGTAATTG...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTACTCTCTGCAATTAAATaGTTTAATGCGCACAAACAA +
Preference number: 2 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVLSAIK*FNAHKQ
Trigger: TTGTTTGTGCGCATTAAAGCATTTAATTGCAGAGAG...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTAAGACAAGTTCAAGTATaGAGGTATGAAAAGACGTTA +
Preference number: 2 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVRQVQV*RYEKTL
Trigger: TAACGTCTTTTCATACCTGCATACTTGAACTTGTCT...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp CTGACACACTGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGATGTCTAGCTCAAATTaGGTCTTTAGAAAACACATG +
Preference number: 2 (lower is better)
Translates to: LTHCASAFWDMVIESRRVMSSSN*VFRKHM
Trigger: CATGTGTTTTCTAAAGACCCAATTTGAGCTAGACAT...CACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CAA 90 bp TTTCCAGTCAATTCACCCAAATTCCAACAGGAATTGGTTTATAAATaGGTTCCAACTGGAACTGGTCATTTGGAATTTCCTACACGGGAA +
Preference number: 2 (lower is better)
Translates to: FPVNSPKFQQELVYK*VPTGTGHLEFPTRE
Trigger: TTCCCGTGTAGGAAATTCCAAATGACCAGTTCCAGTTGGAACCAATTTATAAACCAATTCCTGTTGGAATTTGGGTGAATTGACTGGAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp AAAGCTGAACAGCAATCTATTCTAAATTTATACACCCAAGTGCACTCTCTGCAACTCTCTCTAATGGCATaGATTAAAACTGCCCTGCTT +
Preference number: 2 (lower is better)
Translates to: KAEQQSILNLYTQVHSLQLSLMA*IKTALL
Trigger: AAGCAGGGCAGTTTTAATGCATGCCATTAGAGAGAG...TTGCAGAGAGTGCACTTGGGTGTATAAATTTAGAATAGATTGCTGTTCAGCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACACTGGAACTGGTCATTTaGAATTTCCTACACGGGAAA +
Preference number: 2 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTLELVI*NFLHGK
Trigger: TTTCCCGTGTAGGAAATTCCAAATGACCAGTTCCAG...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACAATACAGTCAAGACAGTaGTTTGGTGGGATTCAAGAT +
Preference number: 2 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTIQSRQ*FGGIQD
Trigger: ATCTTGAATCCCACCAAACCACTGTCTTGACTGTAT...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR TCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACATTGTCAACTTCAAACTaGCTAACAGTACTGACTGAA +
Preference number: 2 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTLSTSN*LTVLTE
Trigger: TTCAGTCAGTACTGTTAGTCAGTTTGAAGTTGACAA...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR GCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACACAATTGATTTCAACATaGTCTAGTAGACTTTCCAGT +
Preference number: 2 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTQLIST*SSRLSS
Trigger: ACTGGAAAGTCTACTAGAGCATGTTGAAATCAATTG...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CCA 72 bp CATCCAGAGCCAATCACAGCAGTATCCCGGGAGCTCTaGCCACATCTCTGCTGGCTGACTGCAGAGCTCCAG +
Preference number: 3 (lower is better)
Translates to: HPEPITAVSREL*PHLCWLTAELQ
Trigger: CTGGAGCTCTGCAGTCAGCCAGCAGAGATGTGGCCAGAGCTCCCGGGATACTGCTGTGATTGGCTCTGGATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR GCA 72 bp ATCCCGGGAGCTCTGGCCACATCTCTGCTGGCTGACTaGAGAGCTCCAGATGTGTGTAGTTGTATGCAGACC +
Preference number: 3 (lower is better)
Translates to: IPGALATSLLAD*RAPDVCSCMQT
Trigger: GGTCTGCATACAACTACACACATCTGGAGCTCTGCAGTCAGCCAGCAGAGATGTGGCCAGAGCTCCCGGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCACGGAACTGGGCGTGCTaGGGCTTCACTTTACTACTC +
Preference number: 3 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPRNWAC*GFTLLL
Trigger: GAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR GCA 72 bp CCAAAGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTaGCATCTGTTACCAAAGGAGAAGAAACAGGAACAG +
Preference number: 3 (lower is better)
Translates to: PKARGALRAHQL*HLLPKEKKQEQ
Trigger: CTGTTCCTGTTTCTTCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCTTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGAAGTGACCCCTCAAAGTaGAAAGGAAAGGTAGCCTTG +
Preference number: 3 (lower is better)
Translates to: RPEEPCELTSCAICYQRRSDPSK*KGKVAL
Trigger: CAAGGCTACCTTTCCTTTCAACTTTGAGGGGTCACT...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CCA 72 bp ACACCTCGTTCTCCATTCCCCGGAACTGGGCGTGCTTaGGCTTCACTTTACTACTCTCAAATATCCCCCGGA +
Preference number: 3 (lower is better)
Translates to: TPRSPFPGTGRA*ASLYYSQISPG
Trigger: TCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAATGGAGAACGAGGTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CCA 72 bp TCTGAACACTTCCAACCCCGCACACGGCTGGCAGAATaGACACTCTCACCAGGACTTTCCCCTCCAAACATA +
Preference number: 3 (lower is better)
Translates to: SEHFQPRTRLAE*TLSPGLSPPNI
Trigger: TATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGCCGTGTGCGGGGTTGGAAGTGTTCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR GCA 72 bp CGAACAGAACTCACAGCGATTTCCCCGCATCCGGGATaGCCTGTGTGTATGGAATCCACACTGATTTCCATG +
Preference number: 3 (lower is better)
Translates to: RTELTAISPHPG*PVCMESTLISM
Trigger: CATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTGTTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR GCA 72 bp CATAAACTTTCGAACATCCAAAGGCCAGAGGAGCCCTaGGAGCTCACCAGCTGTGCCATCTGTTACCAAAGG +
Preference number: 3 (lower is better)
Translates to: HKLSNIQRPEEP*ELTSCAICYQR
Trigger: CCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCTTTGGATGTTCGAAAGTTTATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTCGGAACTGGGCGTGCTaGGGCTTCACTTTACTACTC +
Preference number: 3 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFRNWAC*GFTLLL
Trigger: GAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCAAGTGACCCCTCAAAGTaGAAAGGAAAGGTAGCCTTG +
Preference number: 3 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPSDPSK*KGKVAL
Trigger: CAAGGCTACCTTTCCTTTCAACTTTGAGGGGTCACT...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR GCA 72 bp AACAACACCTCGTTCTCCATTCCCCGGAACTGGGCGTaGTTGGGCTTCACTTTACTACTCTCAAATATCCCC +
Preference number: 3 (lower is better)
Translates to: NNTSFSIPRNWA*LGFTLLLSNIP
Trigger: GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAATGGAGAACGAGGTGTTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGACAGTACTATGGCAAATaGTCAACAGATGATGTTTGT +
Preference number: 3 (lower is better)
Translates to: RPEEPCELTSCAICYQRRQYYGK*STDDVC
Trigger: ACAAACATCATCTGTTGACAATTTGCCATAGTACTG...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGAGAATTGGTTTATAAATaGGTTCCAACTGGAACTGGT +
Preference number: 3 (lower is better)
Translates to: RPEEPCELTSCAICYQRRELVYK*VPTGTG
Trigger: ACCAGTTCCAGTTGGAACCAATTTATAAACCAATTC...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGACACAGATCGAGCTGTTaGTTGGGAGATTTAAATATT +
Preference number: 3 (lower is better)
Translates to: RPEEPCELTSCAICYQRRHRSSC*LGDLNI
Trigger: AATATTTAAATCTCCCAACAAACAGCTCGATCTGTG...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR TCA 72 bp GAGGGAGGAAAAGGCTGGAGAGGCTTCACAACCAAGTaGCCCCTCAAAGTTGAAAGGAAAGGTAGCCTTGTT +
Preference number: 3 (lower is better)
Translates to: EGGKGWRGFTTK*PLKVERKGSLV
Trigger: AACAAGGCTACCTTTCCTTTCAACTTTGAGGGGTCACTTGGTTGTGAAGCCTCTCCAGCCTTTTCCTCCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CCA 72 bp ACATGGGAGTTGCATACAATGCAGATCCTTACCCAGTaGCCACAGCATGCCCTTAGTACCCCTAGAAGTCAA +
Preference number: 3 (lower is better)
Translates to: TWELHTMQILTQ*PQHALSTPRSQ
Trigger: TTGACTTCTAGGGGTACTAAGGGCATGCTGTGGCCACTGGGTAAGGATCTGCATTGTATGCAACTCCCATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp CTGACACACTGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGCGGAACTGGGCGTGCTaGGGCTTCACTTTACTACTC +
Preference number: 3 (lower is better)
Translates to: LTHCASAFWDMVIESRRVRNWAC*GFTLLL
Trigger: GAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG...CACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTACGGAACTGGGCGTGCTaGGGCTTCACTTTACTACTC +
Preference number: 3 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVRNWAC*GFTLLL
Trigger: GAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR TCA 72 bp ACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTaGGGGATAGATCCTCAGCTGGCTGAGCTGCTAAGC +
Preference number: 3 (lower is better)
Translates to: TFILSKVRDWLD*GIDPQLAELLS
Trigger: GCTTAGCAGCTCAGCCAGCTGAGGATCTATCCCTCAGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR GCA 72 bp TGGCTGACTGCAGAGCTCCAGATGTGTGTAGTTGTATaGAGACCGACTACAGAAGAAACAACACCTCGTTCT +
Preference number: 3 (lower is better)
Translates to: WLTAELQMCVVV*RPTTEETTPRS
Trigger: AGAACGAGGTGTTGTTTCTTCTGTAGTCGGTCTGCATACAACTACACACATCTGGAGCTCTGCAGTCAGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CCA 72 bp AGAAGAAACAACACCTCGTTCTCCATTCCCCGGAACTaGGCGTGCTTGGGCTTCACTTTACTACTCTCAAAT +
Preference number: 3 (lower is better)
Translates to: RRNNTSFSIPRN*ACLGFTLLLSN
Trigger: ATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAATGGAGAACGAGGTGTTGTTTCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CCA 72 bp TGGCAGATGATGGATGAGTGTTGTGCACAAATTACATaGGCCTCCGTCTTCCAGCATGACATGGAAGAGCAA +
Preference number: 3 (lower is better)
Translates to: WQMMDECCAQIT*ASVFQHDMEEQ
Trigger: TTGCTCTTCCATGTCATGCTGGAAGACGGAGGCCCATGTAATTTGTGCACAACACTCATCCATCATCTGCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTAGAAAAGGACTGTTGTTaGCCAGGTAGACACAGCTGG +
Preference number: 3 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVEKDCC*PGRHSW
Trigger: CCAGCTGTGTCTACCTGGCAAACAACAGTCCTTTTC...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR GCA 72 bp ATCCACACTGATTTCCATGAAGTGTATGTAGTAGTATaGAGGCAGGGCAAGAAAGGCCCCTGCGTAAACACA +
Preference number: 3 (lower is better)
Translates to: IHTDFHEVYVVV*RQGKKGPCVNT
Trigger: TGTGTTTACGCAGGGGCCTTTCTTGCCCTGCCTGCATACTACTACATACACTTCATGGAAATCAGTGTGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCAGTACTATGGCAAATaGTCAACAGATGATGTTTGT +
Preference number: 3 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPQYYGK*STDDVC
Trigger: ACAAACATCATCTGTTGACAATTTGCCATAGTACTG...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTGAAGGCAAAAACACTTaGAATACAACAGCTGTATCA +
Preference number: 3 (lower is better)
Translates to: RNWACLGFTLLLSNIPRIEGKNT*NTTAVS
Trigger: TGATACAGCTGTTGTATTCAAAGTGTTTTTGCCTTC...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTTTTGGGATATGGTCATaGAAAGTAGAAGAGTGTGCA +
Preference number: 3 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFFGIWS*KVEECA
Trigger: TGCACACTCTTCTACTTTCAATGACCATATCCCAAA...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTATCCTTTCGCTTTGCTTaGTTCCCTAGGATGGCTTCT +
Preference number: 3 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVSFRFA*FPRMAS
Trigger: AGAAGCCATCCTAGGGAACAAAGCAAAGCGAAAGGA...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR GCA 72 bp CAGCCTCATTATCAGATAAGCAGGTTCATAACGGGTTaGACATACAGTCAAGACAGTGGTTTGGTGGGATTC +
Preference number: 3 (lower is better)
Translates to: QPHYQISRFITG*TYSQDSGLVGF
Trigger: GAATCCCACCAAACCACTGTCTTGACTGTATGTGCAACCCGTTATGAACCTGCTTATCTGATAATGAGGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTACTGGAACTGGTCATTaGGAATTTCCTACACGGGAA +
Preference number: 3 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTTGTGH*EFPTRE
Trigger: TTCCCGTGTAGGAAATTCCAAATGACCAGTTCCAGT...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTATTTACCACAGCTCCTTaGTCTTCATTCCCTTTCCAC +
Preference number: 3 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVFTTAP*SSFPFH
Trigger: GTGGAAAGGGAATGAAGACAAAGGAGCTGTGGTAAA...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp CTGACACACTGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGTTTACCACAGCTCCTTaGTCTTCATTCCCTTTCCAC +
Preference number: 3 (lower is better)
Translates to: LTHCASAFWDMVIESRRVFTTAP*SSFPFH
Trigger: GTGGAAAGGGAATGAAGACAAAGGAGCTGTGGTAAA...CACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CCA 72 bp GTTAAATGTCTTAACAGAAAATTCTGTACGCCTCGATaGATGACACTCGGGCTTCACAAGCCTGTATCAGAT +
Preference number: 3 (lower is better)
Translates to: VKCLNRKFCTPR*MTLGLHKPVSD
Trigger: ATCTGATACAGGCTTGTGAAGCCCGAGTGTCATCCATCGAGGCGTACAGAATTTTCTGTTAAGACATTTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CCA 72 bp AAACGTTCTTCACTGACACACTGTGCCTCAGCATTTTaGGATATGGTCATTGAAAGTAGAAGAGTGTGCACT +
Preference number: 3 (lower is better)
Translates to: KRSSLTHCASAF*DMVIESRRVCT
Trigger: AGTGCACACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAGTGAAGAACGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTACAGTACTATGGCAAATaGTCAACAGATGATGTTTGT +
Preference number: 3 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVQYYGK*STDDVC
Trigger: ACAAACATCATCTGTTGACAATTTGCCATAGTACTG...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp CTGACACACTGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGGAAGGCAAAAACACTTaGAATACAACAGCTGTATCA +
Preference number: 3 (lower is better)
Translates to: LTHCASAFWDMVIESRRVEGKNT*NTTAVS
Trigger: TGATACAGCTGTTGTATTCAAAGTGTTTTTGCCTTC...CACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTAGAAGGCAAAAACACTTaGAATACAACAGCTGTATCA +
Preference number: 3 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVEGKNT*NTTAVS
Trigger: TGATACAGCTGTTGTATTCAAAGTGTTTTTGCCTTC...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR TCA 72 bp CACAGCAGATACTGTGCTGTGCTTGCCAAATTAAGATaGCTGGTTAATAGCAGTACTATGGCAAATTGTCAA +
Preference number: 3 (lower is better)
Translates to: HSRYCAVLAKLR*LVNSSTMANCQ
Trigger: TTGACAATTTGCCATAGTACTGCTATTAACCAGTCATCTTAATTTGGCAAGCACAGCACAGTATCTGCTGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR GCA 72 bp GCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGTaGACTGTCTTTTACCACAGCTCCTTTGTCTTCATT +
Preference number: 3 (lower is better)
Translates to: AFWDMVIESRRV*TVFYHSSFVFI
Trigger: AATGAAGACAAAGGAGCTGTGGTAAAAGACAGTGCACACTCTTCTACTTTCAATGACCATATCCCAAAATGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR GCA 72 bp CATGCAGTACATTTGCATAGTGTATTTTCCCCAGCATaGCTTGTAGAACGCTACGCATATCTATGTAACAAA +
Preference number: 3 (lower is better)
Translates to: HAVHLHSVFSPA*LVERYAYLCNK
Trigger: TTTGTTACATAGATATGCGTAGCGTTCTACAAGGCATGCTGGGGAAAATACACTATGCAAATGTACTGCATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR GCA 72 bp TTATGTCTAGCTCAAATTGGGTCTTTAGAAAACACATaGATGTGTCATTTCAGAGGCAAGCCCTTTCATAAA +
Preference number: 3 (lower is better)
Translates to: LCLAQIGSLENT*MCHFRGKPFHK
Trigger: TTTATGAAAGGGCTTGCCTCTGAAATGACACATGCATGTGTTTTCTAAAGACCCAATTTGAGCTAGACATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CCA 72 bp ACTTTCCAGTCAATTCACCCAAATTCCAACAGGAATTaGTTTATAAATTGGTTCCAACTGGAACTGGTCATT +
Preference number: 3 (lower is better)
Translates to: TFQSIHPNSNRN*FINWFQLELVI
Trigger: AATGACCAGTTCCAGTTGGAACCAATTTATAAACCAATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp AAAGCTGAACAGCAATCTATTCTAAATTTATACACCCAAGTGCACTCTCTGCAACAGTACTATGGCAAATaGTCAACAGATGATGTTTGT +
Preference number: 3 (lower is better)
Translates to: KAEQQSILNLYTQVHSLQQYYGK*STDDVC
Trigger: ACAAACATCATCTGTTGACAATTTGCCATAGTACTG...TTGCAGAGAGTGCACTTGGGTGTATAAATTTAGAATAGATTGCTGTTCAGCTTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp AAAGCTGAACAGCAATCTATTCTAAATTTATACACCCAAGTGCACTCTCTGCAAGAATTGGTTTATAAATaGGTTCCAACTGGAACTGGT +
Preference number: 3 (lower is better)
Translates to: KAEQQSILNLYTQVHSLQELVYK*VPTGTG
Trigger: ACCAGTTCCAGTTGGAACCAATTTATAAACCAATTC...TTGCAGAGAGTGCACTTGGGTGTATAAATTTAGAATAGATTGCTGTTCAGCTTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR-3UTR CAA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACAGAATTGGTTTATAAATaGGTTCCAACTGGAACTGGT +
Preference number: 3 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTELVYK*VPTGTG
Trigger: ACCAGTTCCAGTTGGAACCAATTTATAAACCAATTC...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR TCA 72 bp GATTTTGTCAACTTCAAACTGACTAACAGTACTGACTaGACAGAAGGCAAAAACACTTTGAATACAACAGCT +
Preference number: 3 (lower is better)
Translates to: DFVNFKLTNSTD*TEGKNTLNTTA
Trigger: AGCTGTTGTATTCAAAGTGTTTTTGCCTTCTGTTCAGTCAGTACTGTTAGTCAGTTTGAAGTTGACAAAATC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR TCA 72 bp TTAATAGAACTGCAAAGCAAAATAGGTATGGACTTTTaGTGGCAGATGATGGATGAGTGTTGTGCACAAATT +
Preference number: 3 (lower is better)
Translates to: LIELQSKIGMDF*WQMMDECCAQI
Trigger: AATTTGTGCACAACACTCATCCATCATCTGCCATCAAAAGTCCATACCTATTTTGCTTTGCAGTTCTATTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CCA 72 bp GCATTAGTAGAAAGACACTTTATGTCTAGCTCAAATTaGGTCTTTAGAAAACACATGCATGTGTCATTTCAG +
Preference number: 3 (lower is better)
Translates to: ALVERHFMSSSN*VFRKHMHVSFQ
Trigger: CTGAAATGACACATGCATGTGTTTTCTAAAGACCCAATTTGAGCTAGACATAAAGTGTCTTTCTACTAATGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGATCCTCCGGGTCGTGGTaGCTCGGGCCACCTGTGAGC +
Preference number: 4 (lower is better)
Translates to: RPEEPCELTSCAICYQRRSSGSW*LGPPVS
Trigger: GCTCACAGGTGGCCCGAGGCACCACGACCCGGAGGA...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078324.7
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCGCCTCGGGCCACCTGTaGGCTGGGGGAGTGCGGCCC +
Preference number: 4 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPASGHL*AGGVRP
Trigger: GGGCCGCACTCCCCCAGCTCACAGGTGGCCCGAGGC...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000078324.7
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGATGCTGTGGGATATGGTaGGAGGGCTGTGGAGCCCAC +
Preference number: 4 (lower is better)
Translates to: RPEEPCELTSCAICYQRRCCGIW*EGCGAH
Trigger: GTGGGCTCCACAGCCCTCTCACCATATCCCACAGCA...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCTGCTCCTCCGGGTCGTaGTGCCTCGGGCCACCTGTG +
Preference number: 4 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPCSSGS*CLGPPV
Trigger: CACAGGTGGCCCGAGGCACCACGACCCGGAGGAGCA...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078324.7
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp CTGACACACTGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGGCCTCGGGCCACCTGTaGGCTGGGGGAGTGCGGCCC +
Preference number: 4 (lower is better)
Translates to: LTHCASAFWDMVIESRRVASGHL*AGGVRP
Trigger: GGGCCGCACTCCCCCAGCTCACAGGTGGCCCGAGGC...CACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000078324.7
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCATGGTCTCGGCTGTGCTaGGAGCTGGAAGACAAGCGG +
Preference number: 4 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPWSRLC*ELEDKR
Trigger: CCGCTTGTCTTCCAGCTCCCAGCACAGCCGAGACCA...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCACCGATCTTTTCAACCTaGTCCTCCGGGTCGTGGTGC +
Preference number: 4 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPPIFST*SSGSWC
Trigger: GCACCACGACCCGGAGGAGCAGGTTGAAAAGATCGG...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000078324.7
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCATGGCGTCAAAGGAGATaGCTGTGCTGGGAACGGGCA +
Preference number: 4 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPWRQRR*LCWERA
Trigger: TGCCCGTTCCCAGCACAGCCATCTCCTTTGACGCCA...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCATACTGCTCGTGTGGGTaGCACGCCAGTATGCCTCCA +
Preference number: 4 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPYCSCG*HASMPP
Trigger: TGGAGGCATACTGGCGTGCCACCCACACGAGCAGTA...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGACTCGATTTCCCGCCATaGAAACGGCCTCTTTTCTGT +
Preference number: 4 (lower is better)
Translates to: RPEEPCELTSCAICYQRRLDFPP*KRPLFC
Trigger: ACAGAAAAGAGGCCGTTTTCATGGCGGGAAATCGAG...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGACTCAAGCTGGATAGCTaGTTGCTGTTCTCGCTCTTG +
Preference number: 4 (lower is better)
Translates to: RPEEPCELTSCAICYQRRLKLDS*LLFSLL
Trigger: CAAGAGCGAGAACAGCAAGCAGCTATCCAGCTTGAG...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGAGACATCGGAGTCCGATaGCCTGCTTGTATAGGAATC +
Preference number: 4 (lower is better)
Translates to: RPEEPCELTSCAICYQRRDIGVR*PACIGI
Trigger: GATTCCTATACAAGCAGGCCATCGGACTCCGATGTC...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCGTGCTACTGCTCGTGTaGGTGGCACGCCAGTATGCC +
Preference number: 4 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPVLLLV*VARQYA
Trigger: GGCATACTGGCGTGCCACCCACACGAGCAGTAGCAC...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCTGGTCTCGGCTGTGCTaGGAGCTGGAAGACAAGCGG +
Preference number: 4 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPWSRLC*ELEDKR
Trigger: CCGCTTGTCTTCCAGCTCCCAGCACAGCCGAGACCA...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTTGCTGTGGGATATGGTaGGAGGGCTGTGGAGCCCAC +
Preference number: 4 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFCCGIW*EGCGAH
Trigger: GTGGGCTCCACAGCCCTCTCACCATATCCCACAGCA...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCACAAAGGAGATGGCTGTaGTGGGAACGGGCACATCTT +
Preference number: 4 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPQRRWL*WERAHL
Trigger: AAGATGTGCCCGTTCCCAGCACAGCCATCTCCTTTG...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCTGGCGTCAAAGGAGATaGCTGTGCTGGGAACGGGCA +
Preference number: 4 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPWRQRR*LCWERA
Trigger: TGCCCGTTCCCAGCACAGCCATCTCCTTTGACGCCA...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGAATTCTCCAAGCGCAGTaGACTTGGGATGAAGCCAAT +
Preference number: 4 (lower is better)
Translates to: RPEEPCELTSCAICYQRRILQAQ*TWDEAN
Trigger: ATTGGCTTCATCCCAAGTCCACTGCGCTTGGAGAAT...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCTACTGCTCGTGTGGGTaGCACGCCAGTATGCCTCCA +
Preference number: 4 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPYCSCG*HASMPP
Trigger: TGGAGGCATACTGGCGTGCCACCCACACGAGCAGTA...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTGTGCTACTGCTCGTGTaGGTGGCACGCCAGTATGCC +
Preference number: 4 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFVLLLV*VARQYA
Trigger: GGCATACTGGCGTGCCACCCACACGAGCAGTAGCAC...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCGGCTGTGCTGGGAGCTaGAAGACAAGCGGTTCCTAC +
Preference number: 4 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPGCAGS*KTSGSY
Trigger: GTAGGAACCGCTTGTCTTCCAGCTCCCAGCACAGCC...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CAA 72 bp AACACCTCGTTCTCCATTCCCCGGAACTGGGCGTGCTaGGGCTTCACTTTACTACTCTCAAATATCCCCCGG +
Preference number: 4 (lower is better)
Translates to: NTSFSIPRNWAC*GFTLLLSNIPR
Trigger: CCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAATGGAGAACGAGGTGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTGCAGTGGACTTGGGATaGAGCCAATCTCACAGCCCT +
Preference number: 4 (lower is better)
Translates to: RNWACLGFTLLLSNIPRIAVDLG*SQSHSP
Trigger: AGGGCTGTGAGATTGGCTTCATCCCAAGTCCACTGC...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCGCAGTGGACTTGGGATaGAGCCAATCTCACAGCCCT +
Preference number: 4 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPAVDLG*SQSHSP
Trigger: AGGGCTGTGAGATTGGCTTCATCCCAAGTCCACTGC...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGACTGTGTCTCATTCGCTaGCTCTGTAATCCAGAGATT +
Preference number: 4 (lower is better)
Translates to: RPEEPCELTSCAICYQRRLCLIR*LCNPEI
Trigger: AATCTCTGGATTACAGAGTCAGCGAATGAGACACAG...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTAGCTGGATAGCTGCTTaGTGTTCTCGCTCTTGCCGG +
Preference number: 4 (lower is better)
Translates to: RNWACLGFTLLLSNIPRISWIAA*CSRSCR
Trigger: CCGGCAAGAGCGAGAACAGCAAGCAGCTATCCAGCT...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCACTCAAGCTGGATAGCTaGTTGCTGTTCTCGCTCTTG +
Preference number: 4 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPLKLDS*LLFSLL
Trigger: CAAGAGCGAGAACAGCAAGCAGCTATCCAGCTTGAG...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCAGCGGTTCCTACTCTTaGGGGCCCTCTCATTGTGGT +
Preference number: 4 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPSGSYS*GPSHCG
Trigger: ACCACAATGAGAGGGCCCGCAAGAGTAGGAACCGCT...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCAGACATCGGAGTCCGATaGCCTGCTTGTATAGGAATC +
Preference number: 4 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPDIGVR*PACIGI
Trigger: GATTCCTATACAAGCAGGCCATCGGACTCCGATGTC...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGACAAAAGCTACAGGTTTaGACTTCGCTCTCTCAAGCT +
Preference number: 4 (lower is better)
Translates to: RPEEPCELTSCAICYQRRQKLQV*TSLSQA
Trigger: AGCTTGAGAGAGCGAAGTCCAAACCTGTAGCTTTTG...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCACAAGCGCAGTGGACTTaGGATGAAGCCAATCTCACA +
Preference number: 4 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPQAQWT*DEANLT
Trigger: TGTGAGATTGGCTTCATCCCAAGTCCACTGCGCTTG...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGAGTTTTGCTGTTGTTGTaGGAGTTGCTCGGAATGTTC +
Preference number: 4 (lower is better)
Translates to: RPEEPCELTSCAICYQRRVLLLL*ELLGMF
Trigger: GAACATTCCGAGCAACTCCCACAACAACAGCAAAAC...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
CDS-3UTR CCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGACCGCTAAGCTGGATCTaGTGTTGGAACGTTCAATTA +
Preference number: 4 (lower is better)
Translates to: RPEEPCELTSCAICYQRRPLSWI*CWNVQL
Trigger: TAATTGAACGTTCCAACACCAGATCCAGCTTAGCGG...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTGGCTGTGCTGGGAGCTaGAAGACAAGCGGTTCCTAC +
Preference number: 4 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFGCAGS*KTSGSY
Trigger: GTAGGAACCGCTTGTCTTCCAGCTCCCAGCACAGCC...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTAGCTGGATAGCTGCTTaGTGTTCTCGCTCTTGCCGG +
Preference number: 4 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFSWIAA*CSRSCR
Trigger: CCGGCAAGAGCGAGAACAGCAAGCAGCTATCCAGCT...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTCAAAGGAGATGGCTGTaGTGGGAACGGGCACATCTT +
Preference number: 4 (lower is better)
Translates to: RNWACLGFTLLLSNIPRIQRRWL*WERAHL
Trigger: AAGATGTGCCCGTTCCCAGCACAGCCATCTCCTTTG...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGATGCTCCGTCACTTTCTaGTTCTGTTTTGCTGTTGTT +
Preference number: 4 (lower is better)
Translates to: RPEEPCELTSCAICYQRRCSVTF*FCFAVV
Trigger: AACAACAGCAAAACAGAAGCAGAAAGTGACGGAGCA...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
CDS-3UTR GCA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGAGAACATTCAAGTGTTTaGTTTGGGACTTTCCTCTGG +
Preference number: 4 (lower is better)
Translates to: RPEEPCELTSCAICYQRREHSSV*FGTFLW
Trigger: CCAGAGGAAAGTCCCAAAGCAAACACTTGAATGTTC...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTTCGGCCGCCACCAGTTaGACATTCAAGTGTTTGCTT +
Preference number: 4 (lower is better)
Translates to: RNWACLGFTLLLSNIPRISAATS*TFKCLL
Trigger: AAGCAAACACTTGAATGTTCAACTGGTGGCGGCCGA...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTATGCTGTGGGATATGGTaGGAGGGCTGTGGAGCCCAC +
Preference number: 4 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVCCGIW*EGCGAH
Trigger: GTGGGCTCCACAGCCCTCTCACCATATCCCACAGCA...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp TCAACATGCTCTAGTAGACTTTCCAGTCAATTCACCCAAATTCCAACAGGAATTTCCTCCGGGTCGTGGTaGCTCGGGCCACCTGTGAGC +
Preference number: 4 (lower is better)
Translates to: STCSSRLSSQFTQIPTGISSGSW*LGPPVS
Trigger: GCTCACAGGTGGCCCGAGGCACCACGACCCGGAGGA...AATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACTAGAGCATGTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078324.7
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTTGCTGTTCTCGCTCTTaGCGGATCGCTTCCCGGTCC +
Preference number: 4 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTCCSRS*RIASRS
Trigger: GGACCGGGAAGCGATCCGGCAAGAGCGAGAACAGCA...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTCTCAAGCTGGATAGCTaGTTGCTGTTCTCGCTCTTG +
Preference number: 4 (lower is better)
Translates to: RNWACLGFTLLLSNIPRILKLDS*LLFSLL
Trigger: CAAGAGCGAGAACAGCAAGCAGCTATCCAGCTTGAG...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTAGTGCTACTGCTCGTGTaGGTGGCACGCCAGTATGCC +
Preference number: 4 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVVLLLV*VARQYA
Trigger: GGCATACTGGCGTGCCACCCACACGAGCAGTAGCAC...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCATCCAGAGATTGCTGTaGGATATGGTGAGAGGGCTG +
Preference number: 4 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPIQRLL*DMVRGL
Trigger: CAGCCCTCTCACCATATCCCACAGCAATCTCTGGAT...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTTGTATAGGAATCTGCTaGCCCCTGTCTGAGGATGAA +
Preference number: 4 (lower is better)
Translates to: RNWACLGFTLLLSNIPRICIGIC*PLSEDE
Trigger: TTCATCCTCAGACAGGGGTCAGCAGATTCCTATACA...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000078324.7
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTTGCTCGGAATGTTCCTaGTACCATTTCTCCCAGACT +
Preference number: 4 (lower is better)
Translates to: RNWACLGFTLLLSNIPRICSECS*YHFSQT
Trigger: AGTCTGGGAGAAATGGTATCAGGAACATTCCGAGCA...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTTCGGCCGCCACCAGTTaGACATTCAAGTGTTTGCTT +
Preference number: 4 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFSAATS*TFKCLL
Trigger: AAGCAAACACTTGAATGTTCAACTGGTGGCGGCCGA...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACATGCTCCTCCGGGTCGTaGTGCCTCGGGCCACCTGTG +
Preference number: 4 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTCSSGS*CLGPPV
Trigger: CACAGGTGGCCCGAGGCACCACGACCCGGAGGAGCA...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000078324.7
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTTTCGCTCTCTCAAGCTaGATAGCTGCTTGCTGTTCT +
Preference number: 4 (lower is better)
Translates to: RNWACLGFTLLLSNIPRIFALSS*IAACCS
Trigger: AGAACAGCAAGCAGCTATCCAGCTTGAGAGAGCGAA...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTATGGCGTCAAAGGAGATaGCTGTGCTGGGAACGGGCA +
Preference number: 4 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVWRQRR*LCWERA
Trigger: TGCCCGTTCCCAGCACAGCCATCTCCTTTGACGCCA...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCTGTGAAGAAAGTCCTTaGCGTCAAAGGAGATGGCTG +
Preference number: 4 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPCEESP*RQRRWL
Trigger: CAGCCATCTCCTTTGACGCCAAGGACTTTCTTCACA...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTTGTGAAGAAAGTCCTTaGCGTCAAAGGAGATGGCTG +
Preference number: 4 (lower is better)
Translates to: RNWACLGFTLLLSNIPRICEESP*RQRRWL
Trigger: CAGCCATCTCCTTTGACGCCAAGGACTTTCTTCACA...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTCCATTTCTCCCAGACTaGAGGAAGAGTTTCCACTCG +
Preference number: 4 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFPFLPD*RKSFHS
Trigger: CGAGTGGAAACTCTTCCTCCAGTCTGGGAGAAATGG...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCAAGCTGGATCTGGTGTTaGAACGTTCAATTATTGCTC +
Preference number: 4 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPSWIWC*NVQLLL
Trigger: GAGCAATAATTGAACGTTCCAACACCAGATCCAGCT...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTTACTGCTCGTGTGGGTaGCACGCCAGTATGCCTCCA +
Preference number: 4 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTYCSCG*HASMPP
Trigger: TGGAGGCATACTGGCGTGCCACCCACACGAGCAGTA...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTATCCAGAGATTGCTGTaGGATATGGTGAGAGGGCTG +
Preference number: 4 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFIQRLL*DMVRGL
Trigger: CAGCCCTCTCACCATATCCCACAGCAATCTCTGGAT...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCAGAATTCTCTGTAGAATaGTTGCTGTGTCTCATTCGC +
Preference number: 4 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPEFSVE*LLCLIR
Trigger: GCGAATGAGACACAGCAACCATTCTACAGAGAATTC...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTGGCTGTGCTGGGAGCTaGAAGACAAGCGGTTCCTAC +
Preference number: 4 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTGCAGS*KTSGSY
Trigger: GTAGGAACCGCTTGTCTTCCAGCTCCCAGCACAGCC...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp CTGACACACTGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGGCAGTGGACTTGGGATaGAGCCAATCTCACAGCCCT +
Preference number: 4 (lower is better)
Translates to: LTHCASAFWDMVIESRRVAVDLG*SQSHSP
Trigger: AGGGCTGTGAGATTGGCTTCATCCCAAGTCCACTGC...CACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCTGTGTCTCATTCGCTaGCTCTGTAATCCAGAGATT +
Preference number: 4 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPLCLIR*LCNPEI
Trigger: AATCTCTGGATTACAGAGTCAGCGAATGAGACACAG...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTAAGCTGGATAGCTGCTTaGTGTTCTCGCTCTTGCCGG +
Preference number: 4 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVSWIAA*CSRSCR
Trigger: CCGGCAAGAGCGAGAACAGCAAGCAGCTATCCAGCT...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCAAAAGCTACAGGTTTaGACTTCGCTCTCTCAAGCT +
Preference number: 4 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPQKLQV*TSLSQA
Trigger: AGCTTGAGAGAGCGAAGTCCAAACCTGTAGCTTTTG...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CAA 72 bp GTAGAAGAGTGTGCACTGTCTTTTACCACAGCTCCTTaGTCTTCATTCCCTTTCCACGCCCCCATTCTCTAC +
Preference number: 4 (lower is better)
Translates to: VEECALSFTTAP*SSFPFHAPILY
Trigger: GTAGAGAATGGGGGCGTGGAAAGGGAATGAAGACAAAGGAGCTGTGGTAAAAGACAGTGCACACTCTTCTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCATCAAGAACAACCAATTaGAAAGATCTTGCCAACTCA +
Preference number: 4 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPSRTTN*KDLANS
Trigger: TGAGTTGGCAAGATCTTTGCAATTGGTTGTTCTTGA...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCGTGGTTGATGGTGTCTaGATCAAGAACAACCAATTG +
Preference number: 4 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPVVDGV*IKNNQL
Trigger: CAATTGGTTGTTCTTGATGCAGACACCATCAACCAC...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTGTTTTGCTGTTGTTGTaGGAGTTGCTCGGAATGTTC +
Preference number: 4 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFVLLLL*ELLGMF
Trigger: GAACATTCCGAGCAACTCCCACAACAACAGCAAAAC...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
CDS-3UTR CCA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTAGCTGGATCTGGTGTTaGAACGTTCAATTATTGCTC +
Preference number: 4 (lower is better)
Translates to: RNWACLGFTLLLSNIPRISWIWC*NVQLLL
Trigger: GAGCAATAATTGAACGTTCCAACACCAGATCCAGCT...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp TCAACATGCTCTAGTAGACTTTCCAGTCAATTCACCCAAATTCCAACAGGAATTGTGCTACTGCTCGTGTaGGTGGCACGCCAGTATGCC +
Preference number: 4 (lower is better)
Translates to: STCSSRLSSQFTQIPTGIVLLLV*VARQYA
Trigger: GGCATACTGGCGTGCCACCCACACGAGCAGTAGCAC...AATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACTAGAGCATGTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTGAATTCTCTGTAGAATaGTTGCTGTGTCTCATTCGC +
Preference number: 4 (lower is better)
Translates to: RNWACLGFTLLLSNIPRIEFSVE*LLCLIR
Trigger: GCGAATGAGACACAGCAACCATTCTACAGAGAATTC...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCAGCTTCGTCTTTCAATTaGAGAATTCTCTGTAGAATG +
Preference number: 4 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPASSFN*RILCRM
Trigger: CATTCTACAGAGAATTCTCCAATTGAAAGACGAAGC...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCTTTTCTGTTCCTGTTaGATCCGAATATTCTCCAAG +
Preference number: 4 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPLFCSC*IRIFSK
Trigger: CTTGGAGAATATTCGGATTCAACAGGAACAGAAAAG...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTCTTTTCTGTTCCTGTTaGATCCGAATATTCTCCAAG +
Preference number: 4 (lower is better)
Translates to: RNWACLGFTLLLSNIPRILFCSC*IRIFSK
Trigger: CTTGGAGAATATTCGGATTCAACAGGAACAGAAAAG...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTTGTCACTCTTGTTATTaGTATCCTCCCATCAAACCT +
Preference number: 4 (lower is better)
Translates to: RNWACLGFTLLLSNIPRICHSCY*YPPIKP
Trigger: AGGTTTGATGGGAGGATATCAATAACAAGAGTGACA...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCTGTCACTCTTGTTATTaGTATCCTCCCATCAAACCT +
Preference number: 4 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPCHSCY*YPPIKP
Trigger: AGGTTTGATGGGAGGATATCAATAACAAGAGTGACA...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTTGCTCCGTCACTTTCTaGTTCTGTTTTGCTGTTGTT +
Preference number: 4 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFCSVTF*FCFAVV
Trigger: AACAACAGCAAAACAGAAGCAGAAAGTGACGGAGCA...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
CDS-3UTR GCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTGTGGTTGATGGTGTCTaGATCAAGAACAACCAATTG +
Preference number: 4 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFVVDGV*IKNNQL
Trigger: CAATTGGTTGTTCTTGATGCAGACACCATCAACCAC...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CTGACACACTGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGCAAGCGCAGTGGACTTaGGATGAAGCCAATCTCACA +
Preference number: 4 (lower is better)
Translates to: LTHCASAFWDMVIESRRVQAQWT*DEANLT
Trigger: TGTGAGATTGGCTTCATCCCAAGTCCACTGCGCTTG...CACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTCAAGCGCAGTGGACTTaGGATGAAGCCAATCTCACA +
Preference number: 4 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTQAQWT*DEANLT
Trigger: TGTGAGATTGGCTTCATCCCAAGTCCACTGCGCTTG...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTACCATTTCTCCCAGACTaGAGGAAGAGTTTCCACTCG +
Preference number: 4 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVPFLPD*RKSFHS
Trigger: CGAGTGGAAACTCTTCCTCCAGTCTGGGAGAAATGG...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTAGCTGGATCTGGTGTTaGAACGTTCAATTATTGCTC +
Preference number: 4 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFSWIWC*NVQLLL
Trigger: GAGCAATAATTGAACGTTCCAACACCAGATCCAGCT...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTAATCCAGAGATTGCTGTaGGATATGGTGAGAGGGCTG +
Preference number: 4 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVIQRLL*DMVRGL
Trigger: CAGCCCTCTCACCATATCCCACAGCAATCTCTGGAT...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTGAATTCTCTGTAGAATaGTTGCTGTGTCTCATTCGC +
Preference number: 4 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFEFSVE*LLCLIR
Trigger: GCGAATGAGACACAGCAACCATTCTACAGAGAATTC...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACATGGTCTCGGCTGTGCTaGGAGCTGGAAGACAAGCGG +
Preference number: 4 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTWSRLC*ELEDKR
Trigger: CCGCTTGTCTTCCAGCTCCCAGCACAGCCGAGACCA...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTATGTATAGGAATCTGCTaGCCCCTGTCTGAGGATGAA +
Preference number: 4 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVCIGIC*PLSEDE
Trigger: TTCATCCTCAGACAGGGGTCAGCAGATTCCTATACA...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078324.7
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTATGCTCGGAATGTTCCTaGTACCATTTCTCCCAGACT +
Preference number: 4 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVCSECS*YHFSQT
Trigger: AGTCTGGGAGAAATGGTATCAGGAACATTCCGAGCA...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTTGCTCGGAATGTTCCTaGTACCATTTCTCCCAGACT +
Preference number: 4 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTCSECS*YHFSQT
Trigger: AGTCTGGGAGAAATGGTATCAGGAACATTCCGAGCA...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACACCGATCTTTTCAACCTaGTCCTCCGGGTCGTGGTGC +
Preference number: 4 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTPIFST*SSGSWC
Trigger: GCACCACGACCCGGAGGAGCAGGTTGAAAAGATCGG...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000078324.7
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp TCAACATGCTCTAGTAGACTTTCCAGTCAATTCACCCAAATTCCAACAGGAATTAGCTGGATAGCTGCTTaGTGTTCTCGCTCTTGCCGG +
Preference number: 4 (lower is better)
Translates to: STCSSRLSSQFTQIPTGISWIAA*CSRSCR
Trigger: CCGGCAAGAGCGAGAACAGCAAGCAGCTATCCAGCT...AATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACTAGAGCATGTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTTCAAGAACAACCAATTaGAAAGATCTTGCCAACTCA +
Preference number: 4 (lower is better)
Translates to: RNWACLGFTLLLSNIPRISRTTN*KDLANS
Trigger: TGAGTTGGCAAGATCTTTGCAATTGGTTGTTCTTGA...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp TCAACATGCTCTAGTAGACTTTCCAGTCAATTCACCCAAATTCCAACAGGAATTAGCGGTTCCTACTCTTaGGGGCCCTCTCATTGTGGT +
Preference number: 4 (lower is better)
Translates to: STCSSRLSSQFTQIPTGISGSYS*GPSHCG
Trigger: ACCACAATGAGAGGGCCCGCAAGAGTAGGAACCGCT...AATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACTAGAGCATGTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTTTCGCTCTCTCAAGCTaGATAGCTGCTTGCTGTTCT +
Preference number: 4 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTFALSS*IAACCS
Trigger: AGAACAGCAAGCAGCTATCCAGCTTGAGAGAGCGAA...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTATTCGCTCTCTCAAGCTaGATAGCTGCTTGCTGTTCT +
Preference number: 4 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVFALSS*IAACCS
Trigger: AGAACAGCAAGCAGCTATCCAGCTTGAGAGAGCGAA...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTTGTGAAGAAAGTCCTTaGCGTCAAAGGAGATGGCTG +
Preference number: 4 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTCEESP*RQRRWL
Trigger: CAGCCATCTCCTTTGACGCCAAGGACTTTCTTCACA...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CTGACACACTGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGATTCTCCAAGCGCAGTaGACTTGGGATGAAGCCAAT +
Preference number: 4 (lower is better)
Translates to: LTHCASAFWDMVIESRRVILQAQ*TWDEAN
Trigger: ATTGGCTTCATCCCAAGTCCACTGCGCTTGGAGAAT...CACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTAATTCTCCAAGCGCAGTaGACTTGGGATGAAGCCAAT +
Preference number: 4 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVILQAQ*TWDEAN
Trigger: ATTGGCTTCATCCCAAGTCCACTGCGCTTGGAGAAT...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCGCTTCGTCTTTCAATTaGAGAATTCTCTGTAGAATG +
Preference number: 4 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPASSFN*RILCRM
Trigger: CATTCTACAGAGAATTCTCCAATTGAAAGACGAAGC...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CAA 72 bp GCAGCCTCATTATCAGATAAGCAGGTTCATAACGGGTaGCACATACAGTCAAGACAGTGGTTTGGTGGGATT +
Preference number: 4 (lower is better)
Translates to: AASLSDKQVHNG*HIQSRQWFGGI
Trigger: AATCCCACCAAACCACTGTCTTGACTGTATGTGCAACCCGTTATGAACCTGCTTATCTGATAATGAGGCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CAA 72 bp GAGGCTACATTTGGCACAGAGGTAGTTCCTTTCGCTTaGCTTTGTTCCCTAGGATGGCTTCTTGTTAAACTC +
Preference number: 4 (lower is better)
Translates to: EATFGTEVVPFA*LCSLGWLLVKL
Trigger: GAGTTTAACAAGAAGCCATCCTAGGGAACAAAGCAAAGCGAAAGGAACTACCTCTGTGCCAAATGTAGCCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp AAAGCTGAACAGCAATCTATTCTAAATTTATACACCCAAGTGCACTCTCTGCAAGCAGTGGACTTGGGATaGAGCCAATCTCACAGCCCT +
Preference number: 4 (lower is better)
Translates to: KAEQQSILNLYTQVHSLQAVDLG*SQSHSP
Trigger: AGGGCTGTGAGATTGGCTTCATCCCAAGTCCACTGC...TTGCAGAGAGTGCACTTGGGTGTATAAATTTAGAATAGATTGCTGTTCAGCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp TCAACATGCTCTAGTAGACTTTCCAGTCAATTCACCCAAATTCCAACAGGAATTCAAAGGAGATGGCTGTaGTGGGAACGGGCACATCTT +
Preference number: 4 (lower is better)
Translates to: STCSSRLSSQFTQIPTGIQRRWL*WERAHL
Trigger: AAGATGTGCCCGTTCCCAGCACAGCCATCTCCTTTG...AATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACTAGAGCATGTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACAAGCGGTTCCTACTCTTaGGGGCCCTCTCATTGTGGT +
Preference number: 4 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTSGSYS*GPSHCG
Trigger: ACCACAATGAGAGGGCCCGCAAGAGTAGGAACCGCT...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CTGACACACTGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGCAAAAGCTACAGGTTTaGACTTCGCTCTCTCAAGCT +
Preference number: 4 (lower is better)
Translates to: LTHCASAFWDMVIESRRVQKLQV*TSLSQA
Trigger: AGCTTGAGAGAGCGAAGTCCAAACCTGTAGCTTTTG...CACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTCCGCTAAGCTGGATCTaGTGTTGGAACGTTCAATTA +
Preference number: 4 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTPLSWI*CWNVQL
Trigger: TAATTGAACGTTCCAACACCAGATCCAGCTTAGCGG...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CAA 72 bp AATGTTGATATGAGGTTTGGTGCAATTACATGGGAGTaGCATACAATGCAGATCCTTACCCAGTGGCCACAG +
Preference number: 4 (lower is better)
Translates to: NVDMRFGAITWE*HTMQILTQWPQ
Trigger: CTGTGGCCACTGGGTAAGGATCTGCATTGTATGCAACTCCCATGTAATTGCACCAAACCTCATATCAACATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp AAAGCTGAACAGCAATCTATTCTAAATTTATACACCCAAGTGCACTCTCTGCAACAAAGGAGATGGCTGTaGTGGGAACGGGCACATCTT +
Preference number: 4 (lower is better)
Translates to: KAEQQSILNLYTQVHSLQQRRWL*WERAHL
Trigger: AAGATGTGCCCGTTCCCAGCACAGCCATCTCCTTTG...TTGCAGAGAGTGCACTTGGGTGTATAAATTTAGAATAGATTGCTGTTCAGCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTTGCTCCGTCACTTTCTaGTTCTGTTTTGCTGTTGTT +
Preference number: 4 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTCSVTF*FCFAVV
Trigger: AACAACAGCAAAACAGAAGCAGAAAGTGACGGAGCA...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
CDS-3UTR GCA 90 bp CTGACACACTGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGGAACATTCAAGTGTTTaGTTTGGGACTTTCCTCTGG +
Preference number: 4 (lower is better)
Translates to: LTHCASAFWDMVIESRRVEHSSV*FGTFLW
Trigger: CCAGAGGAAAGTCCCAAAGCAAACACTTGAATGTTC...CACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTGAATTCTCTGTAGAATaGTTGCTGTGTCTCATTCGC +
Preference number: 4 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTEFSVE*LLCLIR
Trigger: GCGAATGAGACACAGCAACCATTCTACAGAGAATTC...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp AAAGCTGAACAGCAATCTATTCTAAATTTATACACCCAAGTGCACTCTCTGCAACTCGATTTCCCGCCATaGAAACGGCCTCTTTTCTGT +
Preference number: 4 (lower is better)
Translates to: KAEQQSILNLYTQVHSLQLDFPP*KRPLFC
Trigger: ACAGAAAAGAGGCCGTTTTCATGGCGGGAAATCGAG...TTGCAGAGAGTGCACTTGGGTGTATAAATTTAGAATAGATTGCTGTTCAGCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTTGTCACTCTTGTTATTaGTATCCTCCCATCAAACCT +
Preference number: 4 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTCHSCY*YPPIKP
Trigger: AGGTTTGATGGGAGGATATCAATAACAAGAGTGACA...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp AAAGCTGAACAGCAATCTATTCTAAATTTATACACCCAAGTGCACTCTCTGCAATCGGCCGCCACCAGTTaGACATTCAAGTGTTTGCTT +
Preference number: 4 (lower is better)
Translates to: KAEQQSILNLYTQVHSLQSAATS*TFKCLL
Trigger: AAGCAAACACTTGAATGTTCAACTGGTGGCGGCCGA...TTGCAGAGAGTGCACTTGGGTGTATAAATTTAGAATAGATTGCTGTTCAGCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACAGACATCGGAGTCCGATaGCCTGCTTGTATAGGAATC +
Preference number: 4 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTDIGVR*PACIGI
Trigger: GATTCCTATACAAGCAGGCCATCGGACTCCGATGTC...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp AAAGCTGAACAGCAATCTATTCTAAATTTATACACCCAAGTGCACTCTCTGCAACCATTTCTCCCAGACTaGAGGAAGAGTTTCCACTCG +
Preference number: 4 (lower is better)
Translates to: KAEQQSILNLYTQVHSLQPFLPD*RKSFHS
Trigger: CGAGTGGAAACTCTTCCTCCAGTCTGGGAGAAATGG...TTGCAGAGAGTGCACTTGGGTGTATAAATTTAGAATAGATTGCTGTTCAGCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACACCATTTCTCCCAGACTaGAGGAAGAGTTTCCACTCG +
Preference number: 4 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTPFLPD*RKSFHS
Trigger: CGAGTGGAAACTCTTCCTCCAGTCTGGGAGAAATGG...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CTGACACACTGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGTTCAAGTGTTTGCTTTaGGACTTTCCTCTGGACTTA +
Preference number: 4 (lower is better)
Translates to: LTHCASAFWDMVIESRRVFKCLL*DFPLDL
Trigger: TAAGTCCAGAGGAAAGTCCCAAAGCAAACACTTGAA...CACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACAATCCAGAGATTGCTGTaGGATATGGTGAGAGGGCTG +
Preference number: 4 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTIQRLL*DMVRGL
Trigger: CAGCCCTCTCACCATATCCCACAGCAATCTCTGGAT...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTTATTTCTCTTTAATGTaGAGAAAGTCCTTGGCGTCA +
Preference number: 4 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTYFSLM*RKSLAS
Trigger: TGACGCCAAGGACTTTCTTCACATTAAAGAGAAATA...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACATGCTCGGAATGTTCCTaGTACCATTTCTCCCAGACT +
Preference number: 4 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTCSECS*YHFSQT
Trigger: AGTCTGGGAGAAATGGTATCAGGAACATTCCGAGCA...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp TCAACATGCTCTAGTAGACTTTCCAGTCAATTCACCCAAATTCCAACAGGAATTCTGTGTCTCATTCGCTaGCTCTGTAATCCAGAGATT +
Preference number: 4 (lower is better)
Translates to: STCSSRLSSQFTQIPTGILCLIR*LCNPEI
Trigger: AATCTCTGGATTACAGAGTCAGCGAATGAGACACAG...AATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACTAGAGCATGTTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTAGGAACGTTCAATTATTaGTCTCTTGCTAGGATTGTT +
Preference number: 4 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVGTFNY*SLARIV
Trigger: AACAATCCTAGCAAGAGAGCAATAATTGAACGTTCC...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTATCAAGAACAACCAATTaGAAAGATCTTGCCAACTCA +
Preference number: 4 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVSRTTN*KDLANS
Trigger: TGAGTTGGCAAGATCTTTGCAATTGGTTGTTCTTGA...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACATTCGCTCTCTCAAGCTaGATAGCTGCTTGCTGTTCT +
Preference number: 4 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTFALSS*IAACCS
Trigger: AGAACAGCAAGCAGCTATCCAGCTTGAGAGAGCGAA...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp TCAACATGCTCTAGTAGACTTTCCAGTCAATTCACCCAAATTCCAACAGGAATTCAAAAGCTACAGGTTTaGACTTCGCTCTCTCAAGCT +
Preference number: 4 (lower is better)
Translates to: STCSSRLSSQFTQIPTGIQKLQV*TSLSQA
Trigger: AGCTTGAGAGAGCGAAGTCCAAACCTGTAGCTTTTG...AATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACTAGAGCATGTTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp AAAGCTGAACAGCAATCTATTCTAAATTTATACACCCAAGTGCACTCTCTGCAAATTCTCCAAGCGCAGTaGACTTGGGATGAAGCCAAT +
Preference number: 4 (lower is better)
Translates to: KAEQQSILNLYTQVHSLQILQAQ*TWDEAN
Trigger: ATTGGCTTCATCCCAAGTCCACTGCGCTTGGAGAAT...TTGCAGAGAGTGCACTTGGGTGTATAAATTTAGAATAGATTGCTGTTCAGCTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp TCAACATGCTCTAGTAGACTTTCCAGTCAATTCACCCAAATTCCAACAGGAATTCCGCTAAGCTGGATCTaGTGTTGGAACGTTCAATTA +
Preference number: 4 (lower is better)
Translates to: STCSSRLSSQFTQIPTGIPLSWI*CWNVQL
Trigger: TAATTGAACGTTCCAACACCAGATCCAGCTTAGCGG...AATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACTAGAGCATGTTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACACTGTGTCTCATTCGCTaGCTCTGTAATCCAGAGATT +
Preference number: 4 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTLCLIR*LCNPEI
Trigger: AATCTCTGGATTACAGAGTCAGCGAATGAGACACAG...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp TCAACATGCTCTAGTAGACTTTCCAGTCAATTCACCCAAATTCCAACAGGAATTGTGGTTGATGGTGTCTaGATCAAGAACAACCAATTG +
Preference number: 4 (lower is better)
Translates to: STCSSRLSSQFTQIPTGIVVDGV*IKNNQL
Trigger: CAATTGGTTGTTCTTGATGCAGACACCATCAACCAC...AATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACTAGAGCATGTTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp AAAGCTGAACAGCAATCTATTCTAAATTTATACACCCAAGTGCACTCTCTGCAAGTTTTGCTGTTGTTGTaGGAGTTGCTCGGAATGTTC +
Preference number: 4 (lower is better)
Translates to: KAEQQSILNLYTQVHSLQVLLLL*ELLGMF
Trigger: GAACATTCCGAGCAACTCCCACAACAACAGCAAAAC...TTGCAGAGAGTGCACTTGGGTGTATAAATTTAGAATAGATTGCTGTTCAGCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
CDS-3UTR CCA 90 bp AAAGCTGAACAGCAATCTATTCTAAATTTATACACCCAAGTGCACTCTCTGCAACCGCTAAGCTGGATCTaGTGTTGGAACGTTCAATTA +
Preference number: 4 (lower is better)
Translates to: KAEQQSILNLYTQVHSLQPLSWI*CWNVQL
Trigger: TAATTGAACGTTCCAACACCAGATCCAGCTTAGCGG...TTGCAGAGAGTGCACTTGGGTGTATAAATTTAGAATAGATTGCTGTTCAGCTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp TCAACATGCTCTAGTAGACTTTCCAGTCAATTCACCCAAATTCCAACAGGAATTCTTTTCTGTTCCTGTTaGATCCGAATATTCTCCAAG +
Preference number: 4 (lower is better)
Translates to: STCSSRLSSQFTQIPTGILFCSC*IRIFSK
Trigger: CTTGGAGAATATTCGGATTCAACAGGAACAGAAAAG...AATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACTAGAGCATGTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACAGAACATTCAAGTGTTTaGTTTGGGACTTTCCTCTGG +
Preference number: 4 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTEHSSV*FGTFLW
Trigger: CCAGAGGAAAGTCCCAAAGCAAACACTTGAATGTTC...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp AAAGCTGAACAGCAATCTATTCTAAATTTATACACCCAAGTGCACTCTCTGCAATTTTTCCTGTTGTTGTaGGAGTTGCTCGGAATGTTC +
Preference number: 4 (lower is better)
Translates to: KAEQQSILNLYTQVHSLQFFLLL*ELLGMF
Trigger: GAACATTCCGAGCAACTCCCACAACAACAGGAAAAA...TTGCAGAGAGTGCACTTGGGTGTATAAATTTAGAATAGATTGCTGTTCAGCTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178799.8
CDS-3UTR TCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACACTTTTCTGTTCCTGTTaGATCCGAATATTCTCCAAG +
Preference number: 4 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTLFCSC*IRIFSK
Trigger: CTTGGAGAATATTCGGATTCAACAGGAACAGAAAAG...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp TCAACATGCTCTAGTAGACTTTCCAGTCAATTCACCCAAATTCCAACAGGAATTGGAACGTTCAATTATTaGTCTCTTGCTAGGATTGTT +
Preference number: 4 (lower is better)
Translates to: STCSSRLSSQFTQIPTGIGTFNY*SLARIV
Trigger: AACAATCCTAGCAAGAGAGCAATAATTGAACGTTCC...AATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACTAGAGCATGTTGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACATTCAAGTGTTTGCTTTaGGACTTTCCTCTGGACTTA +
Preference number: 4 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTFKCLL*DFPLDL
Trigger: TAAGTCCAGAGGAAAGTCCCAAAGCAAACACTTGAA...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CAA 72 bp TTTACAAAGAGAGGAGGAATCTTATCTCTTCGTCATTaGAAGGAGAGAAGCTTACAGAAGGAAGATGAAAGA +
Preference number: 4 (lower is better)
Translates to: FTKRGGILSLRH*KERSLQKEDER
Trigger: TCTTTCATCTTCCTTCTGTAAGCTTCTCTCCTTCAAATGACGAAGAGATAAGATTCCTCCTCTCTTTGTAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACAGGAACGTTCAATTATTaGTCTCTTGCTAGGATTGTT +
Preference number: 4 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTGTFNY*SLARIV
Trigger: AACAATCCTAGCAAGAGAGCAATAATTGAACGTTCC...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR GCA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACATCAAGAACAACCAATTaGAAAGATCTTGCCAACTCA +
Preference number: 4 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTSRTTN*KDLANS
Trigger: TGAGTTGGCAAGATCTTTGCAATTGGTTGTTCTTGA...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
3UTR CAA 72 bp AATTCACCCAAATTCCAACAGGAATTGGTTTATAAATaGGTTCCAACTGGAACTGGTCATTTGGAATTTCCT +
Preference number: 4 (lower is better)
Translates to: NSPKFQQELVYK*VPTGTGHLEFP
Trigger: AGGAAATTCCAAATGACCAGTTCCAGTTGGAACCAATTTATAAACCAATTCCTGTTGGAATTTGGGTGAATT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS CCA 90 bp AATCTTCTTCCACCAGAGGGTAGTGGTCTCGGCTGTGCTGGGAGCTaGAAGACAAGCGGTTCCTACTCTTGCGGGCCCTCTCATTGTGGT +
Preference number: 5 (lower is better)
Translates to: NLLPPEGSGLGCAGS*KTSGSYSCGPSHCG
Trigger: ACCACAATGAGAGGGCCCGCAAGAGTAGGAACCGCTTGTCTTCCAGCTCCCAGCACAGCCGAGACCACTACCCTCTGGTGGAAGAAGATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS GCA 90 bp CGCAAAAGCTACAGGTTTGGACTTCGCTCTCTCAAGCTGGATAGCTaGTTGCTGTTCTCGCTCTTGCCGGATCGCTTCCCGGTCCTCTTC +
Preference number: 5 (lower is better)
Translates to: RKSYRFGLRSLKLDS*LLFSLLPDRFPVLF
Trigger: GAAGAGGACCGGGAAGCGATCCGGCAAGAGCGAGAACAGCAAGCAGCTATCCAGCTTGAGAGAGCGAAGTCCAAACCTGTAGCTTTTGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS GCA 90 bp GGTCTCGGCTGTGCTGGGAGCTGGAAGACAAGCGGTTCCTACTCTTaGGGGCCCTCTCATTGTGGTAATTTTCATCCGAGGTCATTAGGC +
Preference number: 5 (lower is better)
Translates to: GLGCAGSWKTSGSYS*GPSHCGNFHPRSLG
Trigger: GCCTAATGACCTCGGATGAAAATTACCACAATGAGAGGGCCCGCAAGAGTAGGAACCGCTTGTCTTCCAGCTCCCAGCACAGCCGAGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTTTGCTGTTCTCGCTCTaGCCGGATCGCTTCCCGGTC +
Preference number: 5 (lower is better)
Translates to: RNWACLGFTLLLSNIPRILLFSL*PDRFPV
Trigger: GACCGGGAAGCGATCCGGCAAGAGCGAGAACAGCAA...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS GCA 90 bp AAAGCTACAGGTTTGGACTTCGCTCTCTCAAGCTGGATAGCTGCTTaGTGTTCTCGCTCTTGCCGGATCGCTTCCCGGTCCTCTTCCAAG +
Preference number: 5 (lower is better)
Translates to: KATGLDFALSSWIAA*CSRSCRIASRSSSK
Trigger: CTTGGAAGAGGACCGGGAAGCGATCCGGCAAGAGCGAGAACAGCAAGCAGCTATCCAGCTTGAGAGAGCGAAGTCCAAACCTGTAGCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTTTGCTGTTCTCGCTCTaGCCGGATCGCTTCCCGGTC +
Preference number: 5 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFLLFSL*PDRFPV
Trigger: GACCGGGAAGCGATCCGGCAAGAGCGAGAACAGCAA...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGACTTTCTGCTTCTGTTTaGCTGTTGTTGTGGGAGTTG +
Preference number: 5 (lower is better)
Translates to: RPEEPCELTSCAICYQRRLSASV*LLLWEL
Trigger: CAACTCCCACAACAACAGCAAAACAGAAGCAGAAAG...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
CDS-3UTR CAA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGACTCTTGCTAGGATTGTaGAGGACAGATCTCTTAGCA +
Preference number: 5 (lower is better)
Translates to: RPEEPCELTSCAICYQRRLLLGL*RTDLLA
Trigger: TGCTAAGAGATCTGTCCTCAACAATCCTAGCAAGAG...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp AGGCCAGAGGAGCCCTGCGAGCTCACCAGCTGTGCCATCTGTTACCAAAGGAGAGCTCTCTTGCTAGGATaGTTGAGGACAGATCTCTTA +
Preference number: 5 (lower is better)
Translates to: RPEEPCELTSCAICYQRRALLLG*LRTDLL
Trigger: TAAGAGATCTGTCCTCAACAATCCTAGCAAGAGAGC...TCTCCTTTGGTAACAGATGGCACAGCTGGTGAGCTCGCAGGGCTCCTCTGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTAAGCTGGATAGCTGCTaGCTGTTCTCGCTCTTGCCG +
Preference number: 5 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFKLDSC*LFSLLP
Trigger: CGGCAAGAGCGAGAACAGCAAGCAGCTATCCAGCTT...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS CCA 90 bp TTGTGGGAGTTGCTCGGAATGTTCCTGATACCATTTCTCCCAGACTaGAGGAAGAGTTTCCACTCGATTTCCCGCCATGAAAACGGCCTC +
Preference number: 5 (lower is better)
Translates to: LWELLGMFLIPFLPD*RKSFHSISRHENGL
Trigger: GAGGCCGTTTTCATGGCGGGAAATCGAGTGGAAACTCTTCCTCCAGTCTGGGAGAAATGGTATCAGGAACATTCCGAGCAACTCCCACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCGCTTCTGTTTTGCTGTaGTTGTGGGAGTTGCTCGGA +
Preference number: 5 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPASVLL*LWELLG
Trigger: TCCGAGCAACTCCCACAACAACAGCAAAACAGAAGC...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
CDS-3UTR CAA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCACTTTCTGCTTCTGTTTaGCTGTTGTTGTGGGAGTTG +
Preference number: 5 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPLSASV*LLLWEL
Trigger: CAACTCCCACAACAACAGCAAAACAGAAGCAGAAAG...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
CDS-3UTR CAA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTATCGGCCGCCACCAGTaGAACATTCAAGTGTTTGCT +
Preference number: 5 (lower is better)
Translates to: RNWACLGFTLLLSNIPRIIGRHQ*NIQVFA
Trigger: AGCAAACACTTGAATGTTCAACTGGTGGCGGCCGAT...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCATCTGTAATCCAGAGATaGCTGTGGGATATGGTGAGA +
Preference number: 5 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPSVIQR*LWDMVR
Trigger: TCTCACCATATCCCACAGCAATCTCTGGATTACAGA...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCTGTTGTTGTGGGAGTaGCTCGGAATGTTCCTGATA +
Preference number: 5 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPLLLWE*LGMFLI
Trigger: TATCAGGAACATTCCGAGCAACTCCCACAACAACAG...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTATCGGCCGCCACCAGTaGAACATTCAAGTGTTTGCT +
Preference number: 5 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFIGRHQ*NIQVFA
Trigger: AGCAAACACTTGAATGTTCAACTGGTGGCGGCCGAT...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp CAGAACTCACAGCGATTTCCCCGCATCCGGGATGCCCTGTGTGTATGGAATCCAAAATTTTTCCTGTTGTaGTGGGAGTTGCTCGGAATG +
Preference number: 5 (lower is better)
Translates to: QNSQRFPRIRDALCVWNPKFFLL*WELLGM
Trigger: CATTCCGAGCAACTCCCACAACAACAGGAAAAATTT...TGGATTCCATACACACAGGGCATCCCGGATGCGGGGAAATCGCTGTGAGTTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCTCTTGCTAGGATTGTaGAGGACAGATCTCTTAGCA +
Preference number: 5 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPLLLGL*RTDLLA
Trigger: TGCTAAGAGATCTGTCCTCAACAATCCTAGCAAGAG...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp ATTCCCCGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCGCTCTCTTGCTAGGATaGTTGAGGACAGATCTCTTA +
Preference number: 5 (lower is better)
Translates to: IPRNWACLGFTLLLSNIPALLLG*LRTDLL
Trigger: TAAGAGATCTGTCCTCAACAATCCTAGCAAGAGAGC...GGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCGGGGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTTCTGTAATCCAGAGATaGCTGTGGGATATGGTGAGA +
Preference number: 5 (lower is better)
Translates to: RNWACLGFTLLLSNIPRISVIQR*LWDMVR
Trigger: TCTCACCATATCCCACAGCAATCTCTGGATTACAGA...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTCTGTCACTCTTGTTATaGATATCCTCCCATCAAACC +
Preference number: 5 (lower is better)
Translates to: RNWACLGFTLLLSNIPRILSLLL*ISSHQT
Trigger: GGTTTGATGGGAGGATATCAATAACAAGAGTGACAG...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTTGTCAGCTGTCACTCTaGTTATTGATATCCTCCCAT +
Preference number: 5 (lower is better)
Translates to: RNWACLGFTLLLSNIPRICQLSL*LLISSH
Trigger: ATGGGAGGATATCAATAACAAGAGTGACAGCTGACA...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTGCTCTCTTGCTAGGATaGTTGAGGACAGATCTCTTA +
Preference number: 5 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFALLLG*LRTDLL
Trigger: TAAGAGATCTGTCCTCAACAATCCTAGCAAGAGAGC...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp CGGAACTGGGCGTGCTTGGGCTTCACTTTACTACTCTCAAATATCCCCCGGATTATTCAAGTGTTTGCTTaGGGACTTTCCTCTGGACTT +
Preference number: 5 (lower is better)
Translates to: RNWACLGFTLLLSNIPRIIQVFA*GLSSGL
Trigger: AAGTCCAGAGGAAAGTCCCAAAGCAAACACTTGAAT...AATCCGGGGGATATTTGAGAGTAGTAAAGTGAAGCCCAAGCACGCCCAGTTCCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTAGGAAATTTTTCCTGTaGTTGTGGGAGTTGCTCGGA +
Preference number: 5 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFRKFFL*LWELLG
Trigger: TCCGAGCAACTCCCACAACAACAGGAAAAATTTCCT...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178799.8
CDS TCA 90 bp CTGCTTCTGTTTTGCTGTTGTTGTGGGAGTTGCTCGGAATGTTCCTaGTACCATTTCTCCCAGACTGGAGGAAGAGTTTCCACTCGATTT +
Preference number: 5 (lower is better)
Translates to: LLLFCCCCGSCSECS*YHFSQTGGRVSTRF
Trigger: AAATCGAGTGGAAACTCTTCCTCCAGTCTGGGAGAAATGGTATCAGGAACATTCCGAGCAACTCCCACAACAACAGCAAAACAGAAGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
CDS-3UTR CAA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACATTGCTGTTCTCGCTCTaGCCGGATCGCTTCCCGGTC +
Preference number: 5 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTLLFSL*PDRFPV
Trigger: GACCGGGAAGCGATCCGGCAAGAGCGAGAACAGCAA...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTTGTCAGCTGTCACTCTaGTTATTGATATCCTCCCAT +
Preference number: 5 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFCQLSL*LLISSH
Trigger: ATGGGAGGATATCAATAACAAGAGTGACAGCTGACA...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTAAGCTGGATCTGGTGTaGGAACGTTCAATTATTGCT +
Preference number: 5 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFKLDLV*ERSIIA
Trigger: AGCAATAATTGAACGTTCCAACACCAGATCCAGCTT...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTATCGGCCGCCACCAGTaGAACATTCAAGTGTTTGCT +
Preference number: 5 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTIGRHQ*NIQVFA
Trigger: AGCAAACACTTGAATGTTCAACTGGTGGCGGCCGAT...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp TCAACATGCTCTAGTAGACTTTCCAGTCAATTCACCCAAATTCCAACAGGAATTAAGCGGTTCCTACTCTaGCGGGCCCTCTCATTGTGG +
Preference number: 5 (lower is better)
Translates to: STCSSRLSSQFTQIPTGIKRFLL*RALSLW
Trigger: CCACAATGAGAGGGCCCGCAAGAGTAGGAACCGCTT...AATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACTAGAGCATGTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTACTGTTGTTGTGGGAGTaGCTCGGAATGTTCCTGATA +
Preference number: 5 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVLLLWE*LGMFLI
Trigger: TATCAGGAACATTCCGAGCAACTCCCACAACAACAG...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTTCTGTTTTGCTGTTGTaGTGGGAGTTGCTCGGAATG +
Preference number: 5 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTSVLLL*WELLGM
Trigger: CATTCCGAGCAACTCCCACAACAACAGCAAAACAGA...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
CDS-3UTR CAA 90 bp GCTGGCAGAATGGACACTCTCACCAGGACTTTCCCCTCCAAACATAGACTGTTTTCAATTATTGCTCTCTaGCTAGGATTGTTGAGGACA +
Preference number: 5 (lower is better)
Translates to: AGRMDTLTRTFPSKHRLFSIIAL*LGLLRT
Trigger: TGTCCTCAACAATCCTAGCAAGAGAGCAATAATTGA...AAACAGTCTATGTTTGGAGGGGAAAGTCCTGGTGAGAGTGTCCATTCTGCCAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp AAAGCTGAACAGCAATCTATTCTAAATTTATACACCCAAGTGCACTCTCTGCAAAAGCGGTTCCTACTCTaGCGGGCCCTCTCATTGTGG +
Preference number: 5 (lower is better)
Translates to: KAEQQSILNLYTQVHSLQKRFLL*RALSLW
Trigger: CCACAATGAGAGGGCCCGCAAGAGTAGGAACCGCTT...TTGCAGAGAGTGCACTTGGGTGTATAAATTTAGAATAGATTGCTGTTCAGCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACAAAGCGGTTCCTACTCTaGCGGGCCCTCTCATTGTGG +
Preference number: 5 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTKRFLL*RALSLW
Trigger: CCACAATGAGAGGGCCCGCAAGAGTAGGAACCGCTT...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS TCA 90 bp CAAGGAAATTTTTCCTGTTGTTGTGGGAGTTGCTCGGAATGTTCCTaGTACCATTTCTCCCAGACTGGAGGAAGAGTTTCCACTCGATTT +
Preference number: 5 (lower is better)
Translates to: QGNFSCCCGSCSECS*YHFSQTGGRVSTRF
Trigger: AAATCGAGTGGAAACTCTTCCTCCAGTCTGGGAGAAATGGTATCAGGAACATTCCGAGCAACTCCCACAACAACAGGAAAAATTTCCTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACAAAGCTGGATAGCTGCTaGCTGTTCTCGCTCTTGCCG +
Preference number: 5 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTKLDSC*LFSLLP
Trigger: CGGCAAGAGCGAGAACAGCAAGCAGCTATCCAGCTT...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp CTGACACACTGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGCTCTTGCTAGGATTGTaGAGGACAGATCTCTTAGCA +
Preference number: 5 (lower is better)
Translates to: LTHCASAFWDMVIESRRVLLLGL*RTDLLA
Trigger: TGCTAAGAGATCTGTCCTCAACAATCCTAGCAAGAG...CACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTACTCTTGCTAGGATTGTaGAGGACAGATCTCTTAGCA +
Preference number: 5 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVLLLGL*RTDLLA
Trigger: TGCTAAGAGATCTGTCCTCAACAATCCTAGCAAGAG...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp CTGACACACTGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGTCTGTAATCCAGAGATaGCTGTGGGATATGGTGAGA +
Preference number: 5 (lower is better)
Translates to: LTHCASAFWDMVIESRRVSVIQR*LWDMVR
Trigger: TCTCACCATATCCCACAGCAATCTCTGGATTACAGA...CACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp TCAACATGCTCTAGTAGACTTTCCAGTCAATTCACCCAAATTCCAACAGGAATTGCTTCTGTTTTGCTGTaGTTGTGGGAGTTGCTCGGA +
Preference number: 5 (lower is better)
Translates to: STCSSRLSSQFTQIPTGIASVLL*LWELLG
Trigger: TCCGAGCAACTCCCACAACAACAGCAAAACAGAAGC...AATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACTAGAGCATGTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
CDS-3UTR CAA 90 bp CTGACACACTGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGTGTCAGCTGTCACTCTaGTTATTGATATCCTCCCAT +
Preference number: 5 (lower is better)
Translates to: LTHCASAFWDMVIESRRVCQLSL*LLISSH
Trigger: ATGGGAGGATATCAATAACAAGAGTGACAGCTGACA...CACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTAAGCTGGATCTGGTGTaGGAACGTTCAATTATTGCT +
Preference number: 5 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTKLDLV*ERSIIA
Trigger: AGCAATAATTGAACGTTCCAACACCAGATCCAGCTT...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp CTGACACACTGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGAAGCTGGATCTGGTGTaGGAACGTTCAATTATTGCT +
Preference number: 5 (lower is better)
Translates to: LTHCASAFWDMVIESRRVKLDLV*ERSIIA
Trigger: AGCAATAATTGAACGTTCCAACACCAGATCCAGCTT...CACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTAAAGCTGGATCTGGTGTaGGAACGTTCAATTATTGCT +
Preference number: 5 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVKLDLV*ERSIIA
Trigger: AGCAATAATTGAACGTTCCAACACCAGATCCAGCTT...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp CTGACACACTGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGATTCAAGTGTTTGCTTaGGGACTTTCCTCTGGACTT +
Preference number: 5 (lower is better)
Translates to: LTHCASAFWDMVIESRRVIQVFA*GLSSGL
Trigger: AAGTCCAGAGGAAAGTCCCAAAGCAAACACTTGAAT...CACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp TCAACATGCTCTAGTAGACTTTCCAGTCAATTCACCCAAATTCCAACAGGAATTCTGTTGTTGTGGGAGTaGCTCGGAATGTTCCTGATA +
Preference number: 5 (lower is better)
Translates to: STCSSRLSSQFTQIPTGILLLWE*LGMFLI
Trigger: TATCAGGAACATTCCGAGCAACTCCCACAACAACAG...AATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACTAGAGCATGTTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp TCAACATGCTCTAGTAGACTTTCCAGTCAATTCACCCAAATTCCAACAGGAATTTCTGTTTTGCTGTTGTaGTGGGAGTTGCTCGGAATG +
Preference number: 5 (lower is better)
Translates to: STCSSRLSSQFTQIPTGISVLLL*WELLGM
Trigger: CATTCCGAGCAACTCCCACAACAACAGCAAAACAGA...AATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACTAGAGCATGTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
CDS-3UTR CAA 90 bp AAAGCTGAACAGCAATCTATTCTAAATTTATACACCCAAGTGCACTCTCTGCAAGCTTCTGTTTTGCTGTaGTTGTGGGAGTTGCTCGGA +
Preference number: 5 (lower is better)
Translates to: KAEQQSILNLYTQVHSLQASVLL*LWELLG
Trigger: TCCGAGCAACTCCCACAACAACAGCAAAACAGAAGC...TTGCAGAGAGTGCACTTGGGTGTATAAATTTAGAATAGATTGCTGTTCAGCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
CDS-3UTR CAA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTATCAATTATTGCTCTCTaGCTAGGATTGTTGAGGACA +
Preference number: 5 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVSIIAL*LGLLRT
Trigger: TGTCCTCAACAATCCTAGCAAGAGAGCAATAATTGA...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTTCAATTATTGCTCTCTaGCTAGGATTGTTGAGGACA +
Preference number: 5 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTSIIAL*LGLLRT
Trigger: TGTCCTCAACAATCCTAGCAAGAGAGCAATAATTGA...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACAATCGGCCGCCACCAGTaGAACATTCAAGTGTTTGCT +
Preference number: 5 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTIGRHQ*NIQVFA
Trigger: AGCAAACACTTGAATGTTCAACTGGTGGCGGCCGAT...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp CTGACACACTGTGCCTCAGCATTTTGGGATATGGTCATTGAAAGTAGAAGAGTGTCTTTTCTGTTCCTGTaGAATCCGAATATTCTCCAA +
Preference number: 5 (lower is better)
Translates to: LTHCASAFWDMVIESRRVSFLFL*NPNILQ
Trigger: TTGGAGAATATTCGGATTCAACAGGAACAGAAAAGA...CACTCTTCTACTTTCAATGACCATATCCCAAAATGCTGAGGCACAGTGTGTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp TGTGATGTAGGGCCAAGACATTTATTCTATCCAAAGTCAGAGACTGGCTGGACTTCTTTTCTGTTCCTGTaGAATCCGAATATTCTCCAA +
Preference number: 5 (lower is better)
Translates to: CDVGPRHLFYPKSETGWTSFLFL*NPNILQ
Trigger: TTGGAGAATATTCGGATTCAACAGGAACAGAAAAGA...AGTCCAGCCAGTCTCTGACTTTGGATAGAATAAATGTCTTGGCCCTACATCACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp GGGATGCCCTGTGTGTATGGAATCCACACTGATTTCCATGAAGTGTATGTAGTATCTTTTCTGTTCCTGTaGAATCCGAATATTCTCCAA +
Preference number: 5 (lower is better)
Translates to: GMPCVYGIHTDFHEVYVVSFLFL*NPNILQ
Trigger: TTGGAGAATATTCGGATTCAACAGGAACAGAAAAGA...TACTACATACACTTCATGGAAATCAGTGTGGATTCCATACACACAGGGCATCCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACACTGTTGTTGTGGGAGTaGCTCGGAATGTTCCTGATA +
Preference number: 5 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTLLLWE*LGMFLI
Trigger: TATCAGGAACATTCCGAGCAACTCCCACAACAACAG...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp TCAACATGCTCTAGTAGACTTTCCAGTCAATTCACCCAAATTCCAACAGGAATTGCTCTCTTGCTAGGATaGTTGAGGACAGATCTCTTA +
Preference number: 5 (lower is better)
Translates to: STCSSRLSSQFTQIPTGIALLLG*LRTDLL
Trigger: TAAGAGATCTGTCCTCAACAATCCTAGCAAGAGAGC...AATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACTAGAGCATGTTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp AAAGCTGAACAGCAATCTATTCTAAATTTATACACCCAAGTGCACTCTCTGCAACTTTCTGCTTCTGTTTaGCTGTTGTTGTGGGAGTTG +
Preference number: 5 (lower is better)
Translates to: KAEQQSILNLYTQVHSLQLSASV*LLLWEL
Trigger: CAACTCCCACAACAACAGCAAAACAGAAGCAGAAAG...TTGCAGAGAGTGCACTTGGGTGTATAAATTTAGAATAGATTGCTGTTCAGCTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
CDS-3UTR CAA 90 bp TCAACATGCTCTAGTAGACTTTCCAGTCAATTCACCCAAATTCCAACAGGAATTCTGTCACTCTTGTTATaGATATCCTCCCATCAAACC +
Preference number: 5 (lower is better)
Translates to: STCSSRLSSQFTQIPTGILSLLL*ISSHQT
Trigger: GGTTTGATGGGAGGATATCAATAACAAGAGTGACAG...AATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACTAGAGCATGTTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp AAAGCTGAACAGCAATCTATTCTAAATTTATACACCCAAGTGCACTCTCTGCAATCTGTAATCCAGAGATaGCTGTGGGATATGGTGAGA +
Preference number: 5 (lower is better)
Translates to: KAEQQSILNLYTQVHSLQSVIQR*LWDMVR
Trigger: TCTCACCATATCCCACAGCAATCTCTGGATTACAGA...TTGCAGAGAGTGCACTTGGGTGTATAAATTTAGAATAGATTGCTGTTCAGCTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACACTGTCACTCTTGTTATaGATATCCTCCCATCAAACC +
Preference number: 5 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTLSLLL*ISSHQT
Trigger: GGTTTGATGGGAGGATATCAATAACAAGAGTGACAG...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp AAAGCTGAACAGCAATCTATTCTAAATTTATACACCCAAGTGCACTCTCTGCAATGTCAGCTGTCACTCTaGTTATTGATATCCTCCCAT +
Preference number: 5 (lower is better)
Translates to: KAEQQSILNLYTQVHSLQCQLSL*LLISSH
Trigger: ATGGGAGGATATCAATAACAAGAGTGACAGCTGACA...TTGCAGAGAGTGCACTTGGGTGTATAAATTTAGAATAGATTGCTGTTCAGCTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp AAAGCTGAACAGCAATCTATTCTAAATTTATACACCCAAGTGCACTCTCTGCAAATTCAAGTGTTTGCTTaGGGACTTTCCTCTGGACTT +
Preference number: 5 (lower is better)
Translates to: KAEQQSILNLYTQVHSLQIQVFA*GLSSGL
Trigger: AAGTCCAGAGGAAAGTCCCAAAGCAAACACTTGAAT...TTGCAGAGAGTGCACTTGGGTGTATAAATTTAGAATAGATTGCTGTTCAGCTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp TCAACATGCTCTAGTAGACTTTCCAGTCAATTCACCCAAATTCCAACAGGAATTTCTTTTCTGTTCCTGTaGAATCCGAATATTCTCCAA +
Preference number: 5 (lower is better)
Translates to: STCSSRLSSQFTQIPTGISFLFL*NPNILQ
Trigger: TTGGAGAATATTCGGATTCAACAGGAACAGAAAAGA...AATTCCTGTTGGAATTTGGGTGAATTGACTGGAAAGTCTACTAGAGCATGTTGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS-3UTR CAA 90 bp CTAAATTTATACACCCAAGTGCACTCTCTGCAATTAAATGCTTTAATGCGCACATCAATTATTGCTCTCTaGCTAGGATTGTTGAGGACA +
Preference number: 5 (lower is better)
Translates to: LNLYTQVHSLQLNALMRTSIIAL*LGLLRT
Trigger: TGTCCTCAACAATCCTAGCAAGAGAGCAATAATTGA...TGTGCGCATTAAAGCATTTAATTGCAGAGAGTGCACTTGGGTGTATAAATTTAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS CCA 72 bp CCACCAGAGGGTAGTGGTCTCGGCTGTGCTGGGAGCTaGAAGACAAGCGGTTCCTACTCTTGCGGGCCCTCT +
Preference number: 6 (lower is better)
Translates to: PPEGSGLGCAGS*KTSGSYSCGPS
Trigger: AGAGGGCCCGCAAGAGTAGGAACCGCTTGTCTTCCAGCTCCCAGCACAGCCGAGACCACTACCCTCTGGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS GCA 72 bp GGTTTGGACTTCGCTCTCTCAAGCTGGATAGCTGCTTaGTGTTCTCGCTCTTGCCGGATCGCTTCCCGGTCC +
Preference number: 6 (lower is better)
Translates to: GLDFALSSWIAA*CSRSCRIASRS
Trigger: GGACCGGGAAGCGATCCGGCAAGAGCGAGAACAGCAAGCAGCTATCCAGCTTGAGAGAGCGAAGTCCAAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS GCA 72 bp CTCTCAAGCTGGATAGCTGCTTGCTGTTCTCGCTCTTaGCGGATCGCTTCCCGGTCCTCTTCCAAGGAGACA +
Preference number: 6 (lower is better)
Translates to: LSSWIAACCSRS*RIASRSSSKET
Trigger: TGTCTCCTTGGAAGAGGACCGGGAAGCGATCCGGCAAGAGCGAGAACAGCAAGCAGCTATCCAGCTTGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS GCA 72 bp GGTCCTCTTCCAAGGAGACATCGGAGTCCGATGGCCTaGTTGTATAGGAATCTGCTGACCCAGCCTCCGAGT +
Preference number: 6 (lower is better)
Translates to: GPLPRRHRSPMA*LYRNLLTQPPS
Trigger: ACTCGGAGGCTGGGTCAGCAGATTCCTATACAAGCAGGCCATCGGACTCCGATGTCTCCTTGGAAGAGGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102760.10
CDS CAA 72 bp TCTCTCAAGCTGGATAGCTGCTTGCTGTTCTCGCTCTaGCCGGATCGCTTCCCGGTCCTCTTCCAAGGAGAC +
Preference number: 6 (lower is better)
Translates to: SLKLDSCLLFSL*PDRFPVLFQGD
Trigger: GTCTCCTTGGAAGAGGACCGGGAAGCGATCCGGCAAGAGCGAGAACAGCAAGCAGCTATCCAGCTTGAGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS CAA 72 bp AGGTTTGGACTTCGCTCTCTCAAGCTGGATAGCTGCTaGCTGTTCTCGCTCTTGCCGGATCGCTTCCCGGTC +
Preference number: 6 (lower is better)
Translates to: RFGLRSLKLDSC*LFSLLPDRFPV
Trigger: GACCGGGAAGCGATCCGGCAAGAGCGAGAACAGCAAGCAGCTATCCAGCTTGAGAGAGCGAAGTCCAAACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS GCA 72 bp TACAGGTTTGGACTTCGCTCTCTCAAGCTGGATAGCTaGTTGCTGTTCTCGCTCTTGCCGGATCGCTTCCCG +
Preference number: 6 (lower is better)
Translates to: YRFGLRSLKLDS*LLFSLLPDRFP
Trigger: CGGGAAGCGATCCGGCAAGAGCGAGAACAGCAAGCAGCTATCCAGCTTGAGAGAGCGAAGTCCAAACCTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS CAA 72 bp CCTCTTCCAAGGAGACATCGGAGTCCGATGGCCTGCTaGTATAGGAATCTGCTGACCCAGCCTCCGAGTCTT +
Preference number: 6 (lower is better)
Translates to: PLPRRHRSPMAC*YRNLLTQPPSL
Trigger: AAGACTCGGAGGCTGGGTCAGCAGATTCCTATACAAGCAGGCCATCGGACTCCGATGTCTCCTTGGAAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102760.10
CDS GCA 72 bp TGTGCTGGGAGCTGGAAGACAAGCGGTTCCTACTCTTaGGGGCCCTCTCATTGTGGTAATTTTCATCCGAGG +
Preference number: 6 (lower is better)
Translates to: CAGSWKTSGSYS*GPSHCGNFHPR
Trigger: CCTCGGATGAAAATTACCACAATGAGAGGGCCCGCAAGAGTAGGAACCGCTTGTCTTCCAGCTCCCAGCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS CCA 72 bp GTCTCATTCGCTGACTCTGTAATCCAGAGATTGCTGTaGGATATGGTGAGAGGGCTGTGGAGCCCACGTTCC +
Preference number: 6 (lower is better)
Translates to: VSFADSVIQRLL*DMVRGLWSPRS
Trigger: GGAACGTGGGCTCCACAGCCCTCTCACCATATCCCACAGCAATCTCTGGATTACAGAGTCAGCGAATGAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS CAA 90 bp AAAAGCTACAGGTTTGGACTTCGCTCTCTCAAGCTGGATAGCTGCTaGCTGTTCTCGCTCTTGCCGGATCGCTTCCCGGTCCTCTTCCAA +
Preference number: 6 (lower is better)
Translates to: KSYRFGLRSLKLDSC*LFSLLPDRFPVLFQ
Trigger: TTGGAAGAGGACCGGGAAGCGATCCGGCAAGAGCGAGAACAGCAAGCAGCTATCCAGCTTGAGAGAGCGAAGTCCAAACCTGTAGCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS CCA 72 bp GCAAAAGCTACAGGTTTGGACTTCGCTCTCTCAAGCTaGATAGCTGCTTGCTGTTCTCGCTCTTGCCGGATC +
Preference number: 6 (lower is better)
Translates to: AKATGLDFALSS*IAACCSRSCRI
Trigger: GATCCGGCAAGAGCGAGAACAGCAAGCAGCTATCCAGCTTGAGAGAGCGAAGTCCAAACCTGTAGCTTTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS CAA 90 bp TCCACTCGATTTCCCGCCATGAAAACGGCCTCTTTTCTGTTCCTGTaGAATCCGAATATTCTCCAAGCGCAGTGGACTTGGGATGAAGCC +
Preference number: 6 (lower is better)
Translates to: STRFPAMKTASFLFL*NPNILQAQWTWDEA
Trigger: GGCTTCATCCCAAGTCCACTGCGCTTGGAGAATATTCGGATTCAACAGGAACAGAAAAGAGGCCGTTTTCATGGCGGGAAATCGAGTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS GCA 72 bp GGACGCATTGACGGCACGACGTCATACGGAGGAATGTaGTCCGTAACGAGCAAGGAAATTTTTCCTGTTGTT +
Preference number: 6 (lower is better)
Translates to: GRIDGTTSYGGM*SVTSKEIFPVV
Trigger: AACAACAGGAAAAATTTCCTTGCTCGTTACGGAGCACATTCCTCCGTATGACGTCGTGCCGTCAATGCGTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178799.8
CDS CAA 72 bp ACGGAGGAATGTGCTCCGTCACTTTCTGCTTCTGTTTaGCTGTTGTTGTGGGAGTTGCTCGGAATGTTCCTG +
Preference number: 6 (lower is better)
Translates to: TEECAPSLSASV*LLLWELLGMFL
Trigger: CAGGAACATTCCGAGCAACTCCCACAACAACAGCAAAACAGAAGCAGAAAGTGACGGAGCACATTCCTCCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
CDS CCA 72 bp TTGCTCGGAATGTTCCTGATACCATTTCTCCCAGACTaGAGGAAGAGTTTCCACTCGATTTCCCGCCATGAA +
Preference number: 6 (lower is better)
Translates to: LLGMFLIPFLPD*RKSFHSISRHE
Trigger: TTCATGGCGGGAAATCGAGTGGAAACTCTTCCTCCAGTCTGGGAGAAATGGTATCAGGAACATTCCGAGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS CAA 72 bp TTTCCCGCCATGAAAACGGCCTCTTTTCTGTTCCTGTaGAATCCGAATATTCTCCAAGCGCAGTGGACTTGG +
Preference number: 6 (lower is better)
Translates to: FPAMKTASFLFL*NPNILQAQWTW
Trigger: CCAAGTCCACTGCGCTTGGAGAATATTCGGATTCAACAGGAACAGAAAAGAGGCCGTTTTCATGGCGGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS CAA 90 bp CGACGTCATACGGAGGAATGTGCTCCGTCACTTTCTGCTTCTGTTTaGCTGTTGTTGTGGGAGTTGCTCGGAATGTTCCTGATACCATTT +
Preference number: 6 (lower is better)
Translates to: RRHTEECAPSLSASV*LLLWELLGMFLIPF
Trigger: AAATGGTATCAGGAACATTCCGAGCAACTCCCACAACAACAGCAAAACAGAAGCAGAAAGTGACGGAGCACATTCCTCCGTATGACGTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
CDS TCA 72 bp TTTTGCTGTTGTTGTGGGAGTTGCTCGGAATGTTCCTaGTACCATTTCTCCCAGACTGGAGGAAGAGTTTCC +
Preference number: 6 (lower is better)
Translates to: FCCCCGSCSECS*YHFSQTGGRVS
Trigger: GGAAACTCTTCCTCCAGTCTGGGAGAAATGGTATCAGGAACATTCCGAGCAACTCCCACAACAACAGCAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
CDS TCA 72 bp TTTTCCTGTTGTTGTGGGAGTTGCTCGGAATGTTCCTaGTACCATTTCTCCCAGACTGGAGGAAGAGTTTCC +
Preference number: 6 (lower is better)
Translates to: FSCCCGSCSECS*YHFSQTGGRVS
Trigger: GGAAACTCTTCCTCCAGTCTGGGAGAAATGGTATCAGGAACATTCCGAGCAACTCCCACAACAACAGGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178799.8
CDS CAA 90 bp CTGGATCTGGTGTTGGAACGTTCAATTATTGCTCTCTTGCTAGGATaGTTGAGGACAGATCTCTTAGCAAGAGAAATGTCAGCTGTCACT +
Preference number: 6 (lower is better)
Translates to: LDLVLERSIIALLLG*LRTDLLAREMSAVT
Trigger: AGTGACAGCTGACATTTCTCTTGCTAAGAGATCTGTCCTCAACAATCCTAGCAAGAGAGCAATAATTGAACGTTCCAACACCAGATCCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS CAA 72 bp ATTTCACTTTGTACTTCCGCTAAGCTGGATCTGGTGTaGGAACGTTCAATTATTGCTCTCTTGCTAGGATTG +
Preference number: 6 (lower is better)
Translates to: ISLCTSAKLDLV*ERSIIALLLGL
Trigger: CAATCCTAGCAAGAGAGCAATAATTGAACGTTCCAACACCAGATCCAGCTTAGCGGAAGTACAAAGTGAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS CAA 72 bp GTGTTGGAACGTTCAATTATTGCTCTCTTGCTAGGATaGTTGAGGACAGATCTCTTAGCAAGAGAAATGTCA +
Preference number: 6 (lower is better)
Translates to: VLERSIIALLLG*LRTDLLAREMS
Trigger: TGACATTTCTCTTGCTAAGAGATCTGTCCTCAACAATCCTAGCAAGAGAGCAATAATTGAACGTTCCAACAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8
CDS CAA 72 bp TGGTGTCTGCATCAAGAACAACCAATTGCAAAGATCTaGCCAACTCAAAAATTCTTTCAATTTCACTTTGTA +
Preference number: 6 (lower is better)
Translates to: WCLHQEQPIAKI*PTQKFFQFHFV
Trigger: TACAAAGTGAAATTGAAAGAATTTTTGAGTTGGCAAGATCTTTGCAATTGGTTGTTCTTGATGCAGACACCA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000078324.7
ENSMUST00000102760.10
ENSMUST00000102761.9
ENSMUST00000178799.8