RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CACNB1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020882

Ensembl transcript IDs: ENSMUST00000017552.13, ENSMUST00000092736.11, ENSMUST00000103144.10, ENSMUST00000107561.9, ENSMUST00000107562.2

Found 149 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTCATGGTCTCCACACCCAGGTGGCACGGAGATGTGGGGCTCAGATaGAGAGGGCCCCTCTCTCCTGATGGCAGCAGGCAGGGTATGCTG +
Preference number: 1 (lower is better)
Translates to: FMVSTPRWHGDVGLR*RGPLSPDGSRQGML
Trigger: CAGCATACCCTGCCTGCTGCCATCAGGAGAGAGGGGCCCTCTGCATCTGAGCCCCACATCTCCGTGCCACCTGGGTGTGGAGACCATGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
3UTR TCA 90 bp GTGGCACGGAGATGTGGGGCTCAGATGCAGAGGGCCCCTCTCTCCTaGTGGCAGCAGGCAGGGTATGCTGTAGACAAAGCTCATTCCTGG +
Preference number: 1 (lower is better)
Translates to: VARRCGAQMQRAPLS*WQQAGYAVDKAHSW
Trigger: CCAGGAATGAGCTTTGTCTACAGCATACCCTGCCTGCTGCCATCAGGAGAGAGGGGCCCTCTGCATCTGAGCCCCACATCTCCGTGCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
3UTR GCA 90 bp CTTATATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATaGAGTCCTAAGGGACCAGTCCCAGGGAGGCAGCACCAGCCAGTC +
Preference number: 1 (lower is better)
Translates to: LIWGPHQASSPTDRR*SPKGPVPGRQHQPV
Trigger: GACTGGCTGGTGCTGCCTCCCTGGGACTGGTCCCTTAGGACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATATAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
3UTR-3UTR GCA 90 bp GTCTCCACACCCAGGTGGCACGGAGATGTGGGGCTCAGATGCAGAGGGCCCCTCGCCTGCACCCAGCTCTaGTCCCCAAGGGTTTCCAAG +
Preference number: 2 (lower is better)
Translates to: VSTPRWHGDVGLRCRGPLACTQL*SPRVSK
Trigger: CTTGGAAACCCTTGGGGAGCAGAGCTGGGTGCAGGC...GAGGGGCCCTCTGCATCTGAGCCCCACATCTCCGTGCCACCTGGGTGTGGAGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
3UTR-3UTR CCA 90 bp GTGGTCACCTCACGGGTACCAACACATAGAGCCTGTCCCCTGGGGCCTCAGGGTGAGAGCCCCCAAAGATaGGGAAAGGGGGCACTTCAG +
Preference number: 2 (lower is better)
Translates to: VVTSRVPTHRACPLGPQGESPQR*GKGALQ
Trigger: CTGAAGTGCCCCCTTTCCCCATCTTTGGGGGCTCTC...ACCCTGAGGCCCCAGGGGACAGGCTCTATGTGTTGGTACCCGTGAGGTGACCAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
3UTR-3UTR CCA 90 bp AGACCCAAGGTCCTTAGGAAGCCCCTGGATGGTGGTCACCTCACGGGTACCAACAGGCAAGACACATCTTaGGTGGTGTGCCCCTCTGCC +
Preference number: 2 (lower is better)
Translates to: RPKVLRKPLDGGHLTGTNRQDTS*VVCPSA
Trigger: GGCAGAGGGGCACACCACCCAAGATGTGTCTTGCCT...GTTGGTACCCGTGAGGTGACCACCATCCAGGGGCTTCCTAAGGACCTTGGGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
3UTR-3UTR CCA 90 bp GCAGCCTGCACCCAGCTCTGCTCCCCAAGGGTTTCCAAGCCGTGCCTTTCACCCTGTTATGTTATGGGATaGACATGGTGGGGGATCCCG +
Preference number: 2 (lower is better)
Translates to: AACTQLCSPRVSKPCLSPCYVMG*TWWGIP
Trigger: CGGGATCCCCCACCATGTCCATCCCATAACATAACA...GGGTGAAAGGCACGGCTTGGAAACCCTTGGGGAGCAGAGCTGGGTGCAGGCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
3UTR-3UTR GCA 90 bp GTGGTCACCTCACGGGTACCAACACATAGAGCCTGTCCCCTGGGGCCTCAGGGTGCAGCAGGCAGGGTATaGTGTAGACAAAGCTCATTC +
Preference number: 2 (lower is better)
Translates to: VVTSRVPTHRACPLGPQGAAGRV*CRQSSF
Trigger: GAATGAGCTTTGTCTACAGCATACCCTGCCTGCTGC...ACCCTGAGGCCCCAGGGGACAGGCTCTATGTGTTGGTACCCGTGAGGTGACCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
3UTR-3UTR TCA 90 bp GACCACAAAGTATTCATGGTCTCCACACCCAGGTGGCACGGAGATGTGGGGCTCCCTGCTTTCTTGCTATaGCCATGGAGGGCAGAGAGC +
Preference number: 2 (lower is better)
Translates to: DHKVFMVSTPRWHGDVGLPAFLL*PWRAES
Trigger: GCTCTCTGCCCTCCATGGTCATAGCAAGAAAGCAGG...GAGCCCCACATCTCCGTGCCACCTGGGTGTGGAGACCATGAATACTTTGTGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
3UTR-3UTR GCA 90 bp TATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTCCTAAGGCTTCCTCATGTTCCCTaGACTCCAGGGTGGGAGGAA +
Preference number: 2 (lower is better)
Translates to: YGVPIRPQVQQTGDAVLRLPHVP*TPGWEE
Trigger: TTCCTCCCACCCTGGAGTGCAGGGAACATGAGGAAG...CCTTAGGACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
3UTR-3UTR CCA 90 bp GGAGGTGGCCGCAAAGGACAGAACTGCGGTTTTATATGTGGCAAAATATCTCTCGGACCTCCCAAGAGCTaGGATAATTACCACCAAAGA +
Preference number: 2 (lower is better)
Translates to: GGGRKGQNCGFICGKISLGPPKS*DNYHQR
Trigger: TCTTTGGTGGTAATTATCCCAGCTCTTGGGAGGTCC...GAGAGATATTTTGCCACATATAAAACCGCAGTTCTGTCCTTTGCGGCCACCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
3UTR GCA 72 bp GGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATaGAGTCCTAAGGGACCAGTCCCAGGGAGGCAGCAC +
Preference number: 3 (lower is better)
Translates to: GPHQASSPTDRR*SPKGPVPGRQH
Trigger: GTGCTGCCTCCCTGGGACTGGTCCCTTAGGACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
3UTR CCA 72 bp GGGGCTACCATGGCCTCTCTTGGGGAAAGTGGACACTaGGGAAGGACAGGGTCACAAGAGGCAAATACAGAG +
Preference number: 3 (lower is better)
Translates to: GATMASLGESGH*GRTGSQEANTE
Trigger: CTCTGTATTTGCCTCTTGTGACCCTGTCCTTCCCCAGTGTCCACTTTCCCCAAGAGAGGCCATGGTAGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
3UTR TCA 72 bp CCACCAAAGAAACCCCAAGCTTTAAGCAAAGGCATCTaGAAACGAGGGACACAGCGCCCCCTGGAGGCAAGA +
Preference number: 3 (lower is better)
Translates to: PPKKPQALSKGI*KRGTQRPLEAR
Trigger: TCTTGCCTCCAGGGGGCGCTGTGTCCCTCGTTTTCAGATGCCTTTGCTTAAAGCTTGGGGTTTCTTTGGTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
3UTR CCA 72 bp CAGAGAATGCTGCTAGGAAACTGTTATGTTATGGGATaGACATGGTGGGGGATCCCGGGTCTGGGGGATTGG +
Preference number: 3 (lower is better)
Translates to: QRMLLGNCYVMG*TWWGIPGLGDW
Trigger: CCAATCCCCCAGACCCGGGATCCCCCACCATGTCCATCCCATAACATAACAGTTTCCTAGCAGCATTCTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
3UTR GCA 72 bp CATCTTGAGTTGCTCACTCCTCAAGGTTCTAGGACCTaGTTTCTTGCTATGACCATGGAGGGCAGAGAGCGC +
Preference number: 3 (lower is better)
Translates to: HLELLTPQGSRT*FLAMTMEGRER
Trigger: GCGCTCTCTGCCCTCCATGGTCATAGCAAGAAAGCAGGTCCTAGAACCTTGAGGAGTGAGCAACTCAAGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR TCA 90 bp GGGCAACATTGGCACAGGAGGTGGCGAGACAGGCGTGAGGTGCCCATCCCTGAGCTGACTTGCTGGAGCTaGGGCGGTTCTGGCGCAGGG +
Preference number: 4 (lower is better)
Translates to: GQHWHRRWRDRREVPIPELTCWS*GGSGAG
Trigger: CCCTGCGCCAGAACCGCCTCAGCTCCAGCAAGTCAG...CTCAGGGATGGGCACCTCACGCCTGTCTCGCCACCTCCTGTGCCAATGTTGCCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR GCA 90 bp AAAACGAGGGACACAGCGCCCCCTGGAGGCAAGACACATCTTGGGTGGTGTGCCGCCGGGCTGGTGGTGTaGCTCCCCCTGCAGGGTCTC +
Preference number: 4 (lower is better)
Translates to: KTRDTAPPGGKTHLGWCAAGLVV*LPLQGL
Trigger: GAGACCCTGCAGGGGGAGGCACACCACCAGCCCGGC...GGCACACCACCCAAGATGTGTCTTGCCTCCAGGGGGCGCTGTGTCCCTCGTTTT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CCA 90 bp GAGGGCCCCTCTCTCCTGATGGCAGCAGGCAGGGTATGCTGTAGACAAAGCTCAGCCCTGCCGGGCTGGTaGTGTGCCTCCCCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: EGPSLLMAAGRVCCRQSSALPGW*CASPCR
Trigger: CCTGCAGGGGGAGGCACACCACCAGCCCGGCAGGGC...TGAGCTTTGTCTACAGCATACCCTGCCTGCTGCCATCAGGAGAGAGGGGCCCTC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR GCA 90 bp GGGCAACATTGGCACAGGAGGTGGCGAGACAGGCGTGAGGTGCCCATCCCTGAGGCTGGCAGCCAGAGCTaGGGTAGCCATGGTGCGGTT +
Preference number: 4 (lower is better)
Translates to: GQHWHRRWRDRREVPIPEAGSQS*GSHGAV
Trigger: AACCGCACCATGGCTACCGCAGCTCTGGCTGCCAGC...CTCAGGGATGGGCACCTCACGCCTGTCTCGCCACCTCCTGTGCCAATGTTGCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CCA 90 bp GTCTCCACACCCAGGTGGCACGGAGATGTGGGGCTCAGATGCAGAGGGCCCCTCGCTGTACTTGCCCTGTaGGCTGGGGTCGAAGACCTC +
Preference number: 4 (lower is better)
Translates to: VSTPRWHGDVGLRCRGPLAVLAL*AGVEDL
Trigger: GAGGTCTTCGACCCCAGCCCACAGGGCAAGTACAGC...GAGGGGCCCTCTGCATCTGAGCCCCACATCTCCGTGCCACCTGGGTGTGGAGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CCA 90 bp GCAGCCTGCACCCAGCTCTGCTCCCCAAGGGTTTCCAAGCCGTGCCTTTCACCCGAGCTGAGGCGGTTCTaGCGCAGGGTCTGTTCCTGC +
Preference number: 4 (lower is better)
Translates to: AACTQLCSPRVSKPCLSPELRRF*RRVCSC
Trigger: GCAGGAACAGACCCTGCGCCAGAACCGCCTCAGCTC...GGGTGAAAGGCACGGCTTGGAAACCCTTGGGGAGCAGAGCTGGGTGCAGGCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR GCA 90 bp GACAGGAGATGCAGTCCTAAGGGACCAGTCCCAGGGAGGCAGCACCAGCCAGTCGCTGGCAGCCAGAGCTaGGGTAGCCATGGTGCGGTT +
Preference number: 4 (lower is better)
Translates to: DRRCSPKGPVPGRQHQPVAGSQS*GSHGAV
Trigger: AACCGCACCATGGCTACCGCAGCTCTGGCTGCCAGC...GACTGGCTGGTGCTGCCTCCCTGGGACTGGTCCCTTAGGACTGCATCTCCTGTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR GCA 90 bp GTCTCCACACCCAGGTGGCACGGAGATGTGGGGCTCAGATGCAGAGGGCCCCTCCCAGCTCATTCTTATTaGGCCCCAGAACCGGCCCAC +
Preference number: 4 (lower is better)
Translates to: VSTPRWHGDVGLRCRGPLPAHSY*APEPAH
Trigger: GTGGGCCGGTTCTGGGGCGCAATAAGAATGAGCTGG...GAGGGGCCCTCTGCATCTGAGCCCCACATCTCCGTGCCACCTGGGTGTGGAGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CCA 90 bp GTCTCCACACCCAGGTGGCACGGAGATGTGGGGCTCAGATGCAGAGGGCCCCTCTTGGCTTTCTCGAGCTaGGCTAAGGCCTGGCGCTCT +
Preference number: 4 (lower is better)
Translates to: VSTPRWHGDVGLRCRGPLLAFSS*AKAWRS
Trigger: AGAGCGCCAGGCCTTAGCCCAGCTCGAGAAAGCCAA...GAGGGGCCCTCTGCATCTGAGCCCCACATCTCCGTGCCACCTGGGTGTGGAGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CCA 90 bp GTGGTCACCTCACGGGTACCAACACATAGAGCCTGTCCCCTGGGGCCTCAGGGTCAGCAGCGGATTGGGTaGCGTGCTGCTAGGCGGATG +
Preference number: 4 (lower is better)
Translates to: VVTSRVPTHRACPLGPQGQQRIG*RAARRM
Trigger: CATCCGCCTAGCAGCACGCCACCCAATCCGCTGCTG...ACCCTGAGGCCCCAGGGGACAGGCTCTATGTGTTGGTACCCGTGAGGTGACCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CCA 90 bp GGGCAACATTGGCACAGGAGGTGGCGAGACAGGCGTGAGGTGCCCATCCCTGAGGGTACTCGTGCACACTaGCATGTTCCCCAGTGGCCC +
Preference number: 4 (lower is better)
Translates to: GQHWHRRWRDRREVPIPEGTRAH*HVPQWP
Trigger: GGGCCACTGGGGAACATGCCAGTGTGCACGAGTACC...CTCAGGGATGGGCACCTCACGCCTGTCTCGCCACCTCCTGTGCCAATGTTGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR GCA 90 bp AGACCCAAGGTCCTTAGGAAGCCCCTGGATGGTGGTCACCTCACGGGTACCAACGTGTGGGGCGGCGGGTaGCAGTCACCACATCTCCCA +
Preference number: 4 (lower is better)
Translates to: RPKVLRKPLDGGHLTGTNVWGGG*QSPHLP
Trigger: TGGGAGATGTGGTGACTGGCACCCGCCGCCCCACAC...GTTGGTACCCGTGAGGTGACCACCATCCAGGGGCTTCCTAAGGACCTTGGGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CCA 90 bp AGCCTGCACCCAGCTCTGCTCCCCAAGGGTTTCCAAGCCGTGCCTTTCACCCACGTACCTCAGCCAGGCTaGAACGCGTGTTGGAGCGCT +
Preference number: 4 (lower is better)
Translates to: SLHPALLPKGFQAVPFTHVPQPG*NACWSA
Trigger: AGCGCTCCAACACGCGTTCCAGCCTGGCTGAGGTAC...GTGGGTGAAAGGCACGGCTTGGAAACCCTTGGGGAGCAGAGCTGGGTGCAGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR TCA 90 bp GTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTCCTAAGGGACCAGCTGACTTGCTGGAGCTaGGGCGGTTCTGGCGCAGGG +
Preference number: 4 (lower is better)
Translates to: VPIRPQVQQTGDAVLRDQLTCWS*GGSGAG
Trigger: CCCTGCGCCAGAACCGCCTCAGCTCCAGCAAGTCAG...CTGGTCCCTTAGGACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR TCA 90 bp GACAGGAGATGCAGTCCTAAGGGACCAGTCCCAGGGAGGCAGCACCAGCCAGTCACTGGAGTTGTCACCTaGCTTGCTGGAGCTGAGGCG +
Preference number: 4 (lower is better)
Translates to: DRRCSPKGPVPGRQHQPVTGVVT*LAGAEA
Trigger: CGCCTCAGCTCCAGCAAGTCAGGTGACAACTCCAGT...GACTGGCTGGTGCTGCCTCCCTGGGACTGGTCCCTTAGGACTGCATCTCCTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CCA 90 bp GACAGGAGATGCAGTCCTAAGGGACCAGTCCCAGGGAGGCAGCACCAGCCAGTCTTGGCTTTCTCGAGCTaGGCTAAGGCCTGGCGCTCT +
Preference number: 4 (lower is better)
Translates to: DRRCSPKGPVPGRQHQPVLAFSS*AKAWRS
Trigger: AGAGCGCCAGGCCTTAGCCCAGCTCGAGAAAGCCAA...GACTGGCTGGTGCTGCCTCCCTGGGACTGGTCCCTTAGGACTGCATCTCCTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR TCA 90 bp GCAGCCTGCACCCAGCTCTGCTCCCCAAGGGTTTCCAAGCCGTGCCTTTCACCCAGACACATCAGAGTCTaGTGGTCGGCTCGTGTAGGA +
Preference number: 4 (lower is better)
Translates to: AACTQLCSPRVSKPCLSPRHIRV*WSARVG
Trigger: TCCTACACGAGCCGACCATCAGACTCTGATGTGTCT...GGGTGAAAGGCACGGCTTGGAAACCCTTGGGGAGCAGAGCTGGGTGCAGGCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR TCA 90 bp AGACCCAAGGTCCTTAGGAAGCCCCTGGATGGTGGTCACCTCACGGGTACCAACACGGTCCCACCAGGATaGTGGGCCTCATGGAAGGCA +
Preference number: 4 (lower is better)
Translates to: RPKVLRKPLDGGHLTGTNTVPPG*WASWKA
Trigger: TGCCTTCCATGAGGCCCATCATCCTGGTGGGACCGT...GTTGGTACCCGTGAGGTGACCACCATCCAGGGGCTTCCTAAGGACCTTGGGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR TCA 90 bp TCGGACTTATATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCATACATGGCGTGCTCCTaGGGCTGGGCCACCGCGTCG +
Preference number: 4 (lower is better)
Translates to: SDLYGVPIRPQVQQTGDAYMACS*GWATAS
Trigger: CGACGCGGTGGCCCAGCCTCAGGAGCACGCCATGTA...TGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATATAAGTCCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR GCA 90 bp AGACCCAAGGTCCTTAGGAAGCCCCTGGATGGTGGTCACCTCACGGGTACCAACCGCAGGGTCTGTTCCTaGAGCAGACGAAGGCTGTCC +
Preference number: 4 (lower is better)
Translates to: RPKVLRKPLDGGHLTGTNRRVCS*SRRRLS
Trigger: GGACAGCCTTCGTCTGCTGCAGGAACAGACCCTGCG...GTTGGTACCCGTGAGGTGACCACCATCCAGGGGCTTCCTAAGGACCTTGGGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR GCA 90 bp CATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTCCTAAGGGACCAGTCCCATCCAAGGCGACCAGCTaGAAGGTCCGGGCCAGCTCG +
Preference number: 4 (lower is better)
Translates to: HQASSPTDRRCSPKGPVPSKATS*KVRASS
Trigger: CGAGCTGGCCCGGACCTTGCAGCTGGTCGCCTTGGA...TGGGACTGGTCCCTTAGGACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR GCA 90 bp TCGGACTTATATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAAGAAGGGGATGCGCTTaGCGTGGGGTGGCGGCGTGG +
Preference number: 4 (lower is better)
Translates to: SDLYGVPIRPQVQQTGDARRGCA*RGVAAW
Trigger: CCACGCCGCCACCCCACGGCAAGCGCATCCCCTTCT...TGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATATAAGTCCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CCA 90 bp GGGCAACATTGGCACAGGAGGTGGCGAGACAGGCGTGAGGTGCCCATCCCTGAGGACGTTTTAGAGAGCTaGGCTGGGTGGTTGATGGTG +
Preference number: 4 (lower is better)
Translates to: GQHWHRRWRDRREVPIPEDVLES*AGWLMV
Trigger: CACCATCAACCACCCAGCCCAGCTCTCTAAAACGTC...CTCAGGGATGGGCACCTCACGCCTGTCTCGCCACCTCCTGTGCCAATGTTGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CCA 90 bp CTTATATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTCCTGCGCTTGCCGTGGGGTaGCGGCGTGGTGACACTGCT +
Preference number: 4 (lower is better)
Translates to: LIWGPHQASSPTDRRCSPALAVG*RRGDTA
Trigger: AGCAGTGTCACCACGCCGCCACCCCACGGCAAGCGC...AGGACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATATAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR TCA 90 bp AAAACGAGGGACACAGCGCCCCCTGGAGGCAAGACACATCTTGGGTGGTGTGCCTCCCGTCTGACCTTTTaGACCGCCCTTTCCTCTTGC +
Preference number: 4 (lower is better)
Translates to: KTRDTAPPGGKTHLGWCASRLTF*TALSSC
Trigger: GCAAGAGGAAAGGGCGGTTCAAAAGGTCAGACGGGA...GGCACACCACCCAAGATGTGTCTTGCCTCCAGGGGGCGCTGTGTCCCTCGTTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR TCA 90 bp GAGGGCCCCTCTCTCCTGATGGCAGCAGGCAGGGTATGCTGTAGACAAAGCTCAACTGGAGTTGTCACCTaGCTTGCTGGAGCTGAGGCG +
Preference number: 4 (lower is better)
Translates to: EGPSLLMAAGRVCCRQSSTGVVT*LAGAEA
Trigger: CGCCTCAGCTCCAGCAAGTCAGGTGACAACTCCAGT...TGAGCTTTGTCTACAGCATACCCTGCCTGCTGCCATCAGGAGAGAGGGGCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR TCA 90 bp AGACCCAAGGTCCTTAGGAAGCCCCTGGATGGTGGTCACCTCACGGGTACCAACGTTTGCTGGGGTTGTTaGGGACGGAGCGTTTGGCCA +
Preference number: 4 (lower is better)
Translates to: RPKVLRKPLDGGHLTGTNVCWGC*GRSVWP
Trigger: TGGCCAAACGCTCCGTCCTCAACAACCCCAGCAAAC...GTTGGTACCCGTGAGGTGACCACCATCCAGGGGCTTCCTAAGGACCTTGGGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR GCA 90 bp TGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTCCTAAGGGACGCAGGGTCTGTTCCTaGAGCAGACGAAGGCTGTCC +
Preference number: 4 (lower is better)
Translates to: WGPHQASSPTDRRCSPKGRRVCS*SRRRLS
Trigger: GGACAGCCTTCGTCTGCTGCAGGAACAGACCCTGCG...TCCCTTAGGACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR GCA 90 bp GTAGGCATTCCCCCATCCACCTACAGCAGTTTAGGGAAAAACCTACAGCTGGGGTCCAAGGCGACCAGCTaGAAGGTCCGGGCCAGCTCG +
Preference number: 4 (lower is better)
Translates to: VGIPPSTYSSLGKNLQLGSKATS*KVRASS
Trigger: CGAGCTGGCCCGGACCTTGCAGCTGGTCGCCTTGGA...CCCCAGCTGTAGGTTTTTCCCTAAACTGCTGTAGGTGGATGGGGGAATGCCTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR GCA 90 bp GTAGGCATTCCCCCATCCACCTACAGCAGTTTAGGGAAAAACCTACAGCTGGGGGGCCAGGTGGGTGGTTaGTGGGGTAAAGGCCTGGGG +
Preference number: 4 (lower is better)
Translates to: VGIPPSTYSSLGKNLQLGGQVGG*WGKGLG
Trigger: CCCCAGGCCTTTACCCCAGCAACCACCCACCTGGCC...CCCCAGCTGTAGGTTTTTCCCTAAACTGCTGTAGGTGGATGGGGGAATGCCTAC
59% GC, longest homopolymer 6 nt, total homopolymer stretches 20 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR GCA 90 bp ATTGGGGAAGATTCAGCGGGCTCTCTTCAGGAAAAGCACCCAACCTTTCCCAAGTGGTGTGCCTCCCCCTaGAGGGTCTCCAGGCCCTGG +
Preference number: 4 (lower is better)
Translates to: IGEDSAGSLQEKHPTFPKWCASP*RVSRPW
Trigger: CCAGGGCCTGGAGACCCTGCAGGGGGAGGCACACCA...CTTGGGAAAGGTTGGGTGCTTTTCCTGAAGAGAGCCCGCTGAATCTTCCCCAAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CCA 90 bp AGACCCAAGGTCCTTAGGAAGCCCCTGGATGGTGGTCACCTCACGGGTACCAACGACTCTGCTGAGCCCTaGCGGACGAAGCTGTTGGAT +
Preference number: 4 (lower is better)
Translates to: RPKVLRKPLDGGHLTGTNDSAEP*RTKLLD
Trigger: ATCCAACAGCTTCGTCCGCCAGGGCTCAGCAGAGTC...GTTGGTACCCGTGAGGTGACCACCATCCAGGGGCTTCCTAAGGACCTTGGGTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CCA 90 bp CAACAGACAGGAGATGCAGTCCTAAGGGACCAGTCCCAGGGAGGCAGCACCAGCAGGCACCTCATCCCCTaGAGACGGATTGTAGCCAAC +
Preference number: 4 (lower is better)
Translates to: QQTGDAVLRDQSQGGSTSRHLIP*RRIVAN
Trigger: GTTGGCTACAATCCGTCTCCAGGGGATGAGGTGCCT...GCTGGTGCTGCCTCCCTGGGACTGGTCCCTTAGGACTGCATCTCCTGTCTGTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CCA 90 bp GTGGTCACCTCACGGGTACCAACACATAGAGCCTGTCCCCTGGGGCCTCAGGGTATTTCTGCTTCTGTTTaGCACTGGCAGGGGGTGTGG +
Preference number: 4 (lower is better)
Translates to: VVTSRVPTHRACPLGPQGISASV*HWQGVW
Trigger: CCACACCCCCTGCCAGTGCCAAACAGAAGCAGAAAT...ACCCTGAGGCCCCAGGGGACAGGCTCTATGTGTTGGTACCCGTGAGGTGACCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CCA 90 bp GACAGGAGATGCAGTCCTAAGGGACCAGTCCCAGGGAGGCAGCACCAGCCAGTCGACGTTTTAGAGAGCTaGGCTGGGTGGTTGATGGTG +
Preference number: 4 (lower is better)
Translates to: DRRCSPKGPVPGRQHQPVDVLES*AGWLMV
Trigger: CACCATCAACCACCCAGCCCAGCTCTCTAAAACGTC...GACTGGCTGGTGCTGCCTCCCTGGGACTGGTCCCTTAGGACTGCATCTCCTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CCA 90 bp GTAGGCATTCCCCCATCCACCTACAGCAGTTTAGGGAAAAACCTACAGCTGGGGGCCTGCCCGGCCAGGTaGGTGGTTGCTGGGGTAAAG +
Preference number: 4 (lower is better)
Translates to: VGIPPSTYSSLGKNLQLGACPAR*VVAGVK
Trigger: CTTTACCCCAGCAACCACCCACCTGGCCGGGCAGGC...CCCCAGCTGTAGGTTTTTCCCTAAACTGCTGTAGGTGGATGGGGGAATGCCTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR TCA 90 bp CAACAGACAGGAGATGCAGTCCTAAGGGACCAGTCCCAGGGAGGCAGCACCAGCAGACACATCAGAGTCTaGTGGTCGGCTCGTGTAGGA +
Preference number: 4 (lower is better)
Translates to: QQTGDAVLRDQSQGGSTSRHIRV*WSARVG
Trigger: TCCTACACGAGCCGACCATCAGACTCTGATGTGTCT...GCTGGTGCTGCCTCCCTGGGACTGGTCCCTTAGGACTGCATCTCCTGTCTGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR TCA 90 bp GTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTCCTAAGGGACCAGGTTTGCTGGGGTTGTTaGGGACGGAGCGTTTGGCCA +
Preference number: 4 (lower is better)
Translates to: VPIRPQVQQTGDAVLRDQVCWGC*GRSVWP
Trigger: TGGCCAAACGCTCCGTCCTCAACAACCCCAGCAAAC...CTGGTCCCTTAGGACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CCA 90 bp AGACCCAAGGTCCTTAGGAAGCCCCTGGATGGTGGTCACCTCACGGGTACCAACGGCGGACGAAGCTGTTaGATGTTGTATCCGAGGACG +
Preference number: 4 (lower is better)
Translates to: RPKVLRKPLDGGHLTGTNGGRSC*MLYPRT
Trigger: CGTCCTCGGATACAACATCCAACAGCTTCGTCCGCC...GTTGGTACCCGTGAGGTGACCACCATCCAGGGGCTTCCTAAGGACCTTGGGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CCA 90 bp GGACTTATATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTGAGCTGAGGCGGTTCTaGCGCAGGGTCTGTTCCTGC +
Preference number: 4 (lower is better)
Translates to: GLIWGPHQASSPTDRRCSELRRF*RRVCSC
Trigger: GCAGGAACAGACCCTGCGCCAGAACCGCCTCAGCTC...ACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATATAAGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CCA 90 bp AAAACGAGGGACACAGCGCCCCCTGGAGGCAAGACACATCTTGGGTGGTGTGCCCTCCCAGACTGGAACTaGAGTTGTCACCTGACTTGC +
Preference number: 4 (lower is better)
Translates to: KTRDTAPPGGKTHLGWCALPDWN*SCHLTC
Trigger: GCAAGTCAGGTGACAACTCCAGTTCCAGTCTGGGAG...GGCACACCACCCAAGATGTGTCTTGCCTCCAGGGGGCGCTGTGTCCCTCGTTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CCA 90 bp TGGGGAAGATTCAGCGGGCTCTCTTCAGGAAAAGCACCCAACCTTTCCCAAGTAGCTTCTGTTTGGCACTaGCAGGGGGTGTGGGGCGGC +
Preference number: 4 (lower is better)
Translates to: WGRFSGLSSGKAPNLSQVASVWH*QGVWGG
Trigger: GCCGCCCCACACCCCCTGCCAGTGCCAAACAGAAGC...TACTTGGGAAAGGTTGGGTGCTTTTCCTGAAGAGAGCCCGCTGAATCTTCCCCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CCA 90 bp CATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTCCTAAGGGACCAGTCCCAGTACCTCAGCCAGGCTaGAACGCGTGTTGGAGCGCT +
Preference number: 4 (lower is better)
Translates to: HQASSPTDRRCSPKGPVPVPQPG*NACWSA
Trigger: AGCGCTCCAACACGCGTTCCAGCCTGGCTGAGGTAC...TGGGACTGGTCCCTTAGGACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CCA 90 bp GGACTTATATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTCAGCAGCGGATTGGGTaGCGTGCTGCTAGGCGGATG +
Preference number: 4 (lower is better)
Translates to: GLIWGPHQASSPTDRRCSQQRIG*RAARRM
Trigger: CATCCGCCTAGCAGCACGCCACCCAATCCGCTGCTG...ACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATATAAGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR TCA 90 bp GGACTTATATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTACGGTCCCACCAGGATaGTGGGCCTCATGGAAGGCA +
Preference number: 4 (lower is better)
Translates to: GLIWGPHQASSPTDRRCSTVPPG*WASWKA
Trigger: TGCCTTCCATGAGGCCCATCATCCTGGTGGGACCGT...ACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATATAAGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CCA 90 bp GACCACAAAGTATTCATGGTCTCCACACCCAGGTGGCACGGAGATGTGGGGCTCAGGCACCTCATCCCCTaGAGACGGATTGTAGCCAAC +
Preference number: 4 (lower is better)
Translates to: DHKVFMVSTPRWHGDVGLRHLIP*RRIVAN
Trigger: GTTGGCTACAATCCGTCTCCAGGGGATGAGGTGCCT...GAGCCCCACATCTCCGTGCCACCTGGGTGTGGAGACCATGAATACTTTGTGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CCA 90 bp TGGGGAAGATTCAGCGGGCTCTCTTCAGGAAAAGCACCCAACCTTTCCCAAGTACAGGTGGGTGGTTGCTaGGGTAAAGGCCTGGGGGCT +
Preference number: 4 (lower is better)
Translates to: WGRFSGLSSGKAPNLSQVQVGGC*GKGLGA
Trigger: AGCCCCCAGGCCTTTACCCCAGCAACCACCCACCTG...TACTTGGGAAAGGTTGGGTGCTTTTCCTGAAGAGAGCCCGCTGAATCTTCCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CCA 90 bp GGACTTATATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTGTGAGCACCTGTACCTaGAGGTTGGAGACGGGGGCA +
Preference number: 4 (lower is better)
Translates to: GLIWGPHQASSPTDRRCSVSTCT*RLETGA
Trigger: TGCCCCCGTCTCCAACCTCCAGGTACAGGTGCTCAC...ACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATATAAGTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CCA 90 bp AGATTCAGCGGGCTCTCTTCAGGAAAAGCACCCAACCTTTCCCAAGTACCCCTGGATCTCTTGGGAAGGTaGGTAAGGGCCCCGGGACAT +
Preference number: 4 (lower is better)
Translates to: RFSGLSSGKAPNLSQVPLDLLGR*VRAPGH
Trigger: ATGTCCCGGGGCCCTTACCCACCTTCCCAAGAGATC...CAGGGGTACTTGGGAAAGGTTGGGTGCTTTTCCTGAAGAGAGCCCGCTGAATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR GCA 90 bp TGGGGAAGATTCAGCGGGCTCTCTTCAGGAAAAGCACCCAACCTTTCCCAAGTATCCTCTTGCTGTACTTaGCCTGTGGGCTGGGGTCGA +
Preference number: 4 (lower is better)
Translates to: WGRFSGLSSGKAPNLSQVSSCCT*PVGWGR
Trigger: TCGACCCCAGCCCACAGGGCAAGTACAGCAAGAGGA...TACTTGGGAAAGGTTGGGTGCTTTTCCTGAAGAGAGCCCGCTGAATCTTCCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR GCA 90 bp GAGGGCCCCTCTCTCCTGATGGCAGCAGGCAGGGTATGCTGTAGACAAAGCTCACTGCCATCAAACCGATaGTTGAGGAAGTCAAACAAC +
Preference number: 4 (lower is better)
Translates to: EGPSLLMAAGRVCCRQSSLPSNR*LRKSNN
Trigger: GTTGTTTGACTTCCTCAAGCATCGGTTTGATGGCAG...TGAGCTTTGTCTACAGCATACCCTGCCTGCTGCCATCAGGAGAGAGGGGCCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CCA 90 bp TCGGACTTATATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCACTCCCAGACTGGAACTaGAGTTGTCACCTGACTTGC +
Preference number: 4 (lower is better)
Translates to: SDLYGVPIRPQVQQTGDALPDWN*SCHLTC
Trigger: GCAAGTCAGGTGACAACTCCAGTTCCAGTCTGGGAG...TGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATATAAGTCCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CCA 90 bp AGACCCAAGGTCCTTAGGAAGCCCCTGGATGGTGGTCACCTCACGGGTACCAACCAGGCATCTTCCAATTaGTTCTCGTCCAGGATTATG +
Preference number: 4 (lower is better)
Translates to: RPKVLRKPLDGGHLTGTNQASSN*FSSRIM
Trigger: CATAATCCTGGACGAGAACCAATTGGAAGATGCCTG...GTTGGTACCCGTGAGGTGACCACCATCCAGGGGCTTCCTAAGGACCTTGGGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CCA 90 bp AGTCCCCAGTCCCACCAAAAACCACAGACACCAGACGCTGCCGCTCACCACGTTCAGGCATCTTCCAATTaGTTCTCGTCCAGGATTATG +
Preference number: 4 (lower is better)
Translates to: SPQSHQKPQTPDAAAHHVQASSN*FSSRIM
Trigger: CATAATCCTGGACGAGAACCAATTGGAAGATGCCTG...AACGTGGTGAGCGGCAGCGTCTGGTGTCTGTGGTTTTTGGTGGGACTGGGGACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR TCA 90 bp TGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTCCTAAGGGACATCAAACCGATGCTTaGGGAAGTCAAACAACGCTT +
Preference number: 4 (lower is better)
Translates to: WGPHQASSPTDRRCSPKGHQTDA*GSQTTL
Trigger: AAGCGTTGTTTGACTTCCTCAAGCATCGGTTTGATG...TCCCTTAGGACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR GCA 90 bp AGATTCAGCGGGCTCTCTTCAGGAAAAGCACCCAACCTTTCCCAAGTACCCCTGCAGCTTCTCCGAGGCTaGTATTTGGACATTGAGGTG +
Preference number: 4 (lower is better)
Translates to: RFSGLSSGKAPNLSQVPLQLLRG*YLDIEV
Trigger: CACCTCAATGTCCAAATAGCAGCCTCGGAGAAGCTG...CAGGGGTACTTGGGAAAGGTTGGGTGCTTTTCCTGAAGAGAGCCCGCTGAATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR GCA 90 bp TCGGACTTATATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCACAGCTTCTCCGAGGCTaGTATTTGGACATTGAGGTG +
Preference number: 4 (lower is better)
Translates to: SDLYGVPIRPQVQQTGDAQLLRG*YLDIEV
Trigger: CACCTCAATGTCCAAATAGCAGCCTCGGAGAAGCTG...TGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATATAAGTCCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CCA 90 bp AAGGACCTCCCAAGAGCTGGGATAATTACCACCAAAGAAACCCCAAGCTTTAAGAGCTGGGCTAAGGCCTaGCGCTCTGCCTCCTTCCTT +
Preference number: 4 (lower is better)
Translates to: KDLPRAGIITTKETPSFKSWAKA*RSASFL
Trigger: AAGGAAGGAGGCAGAGCGCCAGGCCTTAGCCCAGCT...CTTAAAGCTTGGGGTTTCTTTGGTGGTAATTATCCCAGCTCTTGGGAGGTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR TCA 90 bp TGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTCCTAAGGGACTGCTATTTGGACATTaGGGTGTTTGGATTGAGACT +
Preference number: 4 (lower is better)
Translates to: WGPHQASSPTDRRCSPKGLLFGH*GVWIET
Trigger: AGTCTCAATCCAAACACCTCAATGTCCAAATAGCAG...TCCCTTAGGACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR TCA 90 bp GTAGGCATTCCCCCATCCACCTACAGCAGTTTAGGGAAAAACCTACAGCTGGGGCATCAAACCGATGCTTaGGGAAGTCAAACAACGCTT +
Preference number: 4 (lower is better)
Translates to: VGIPPSTYSSLGKNLQLGHQTDA*GSQTTL
Trigger: AAGCGTTGTTTGACTTCCTCAAGCATCGGTTTGATG...CCCCAGCTGTAGGTTTTTCCCTAAACTGCTGTAGGTGGATGGGGGAATGCCTAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR GCA 90 bp CCAAGAGCTGGGATAATTACCACCAAAGAAACCCCAAGCTTTAAGCAAAGGCATACCGCCCTTTCCTCTTaGTGTACTTGCCCTGTGGGC +
Preference number: 4 (lower is better)
Translates to: PRAGIITTKETPSFKQRHTALSS*CTCPVG
Trigger: GCCCACAGGGCAAGTACAGCAAGAGGAAAGGGCGGT...ATGCCTTTGCTTAAAGCTTGGGGTTTCTTTGGTGGTAATTATCCCAGCTCTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR GCA 90 bp GGACTTATATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTCTGCCATCAAACCGATaGTTGAGGAAGTCAAACAAC +
Preference number: 4 (lower is better)
Translates to: GLIWGPHQASSPTDRRCSLPSNR*LRKSNN
Trigger: GTTGTTTGACTTCCTCAAGCATCGGTTTGATGGCAG...ACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATATAAGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR TCA 90 bp ATTGGGGAAGATTCAGCGGGCTCTCTTCAGGAAAAGCACCCAACCTTTCCCAAGCTGCTATTTGGACATTaGGGTGTTTGGATTGAGACT +
Preference number: 4 (lower is better)
Translates to: IGEDSAGSLQEKHPTFPKLLFGH*GVWIET
Trigger: AGTCTCAATCCAAACACCTCAATGTCCAAATAGCAG...CTTGGGAAAGGTTGGGTGCTTTTCCTGAAGAGAGCCCGCTGAATCTTCCCCAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS CCA 90 bp TGGCCCGGTCCAGCGGCTGGTCCCCGGAAGCAAGGTAGGGTCCCATaGCGTGCTCCTGAGGCTGGGCCACCGCGTCGCCTCCCCGCGGTG +
Preference number: 5 (lower is better)
Translates to: WPGPAAGPRKQGRVP*RAPEAGPPRRLPAV
Trigger: CACCGCGGGGAGGCGACGCGGTGGCCCAGCCTCAGGAGCACGCCATGGGACCCTACCTTGCTTCCGGGGACCAGCCGCTGGACCGGGCCA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103144.10
CDS TCA 90 bp CATGGCGTGCTCCTGAGGCTGGGCCACCGCGTCGCCTCCCCGCGGTaGGGCCTCCAGCCCGCCCCAGAAGCTGAGATTTCTCCTGAGCGA +
Preference number: 5 (lower is better)
Translates to: HGVLLRLGHRVASPR*GLQPAPEAEISPER
Trigger: TCGCTCAGGAGAAATCTCAGCTTCTGGGGCGGGCTGGAGGCCTCACCGCGGGGAGGCGACGCGGTGGCCCAGCCTCAGGAGCACGCCATG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107561.9
ENSMUST00000107562.2
CDS GCA 90 bp GGGTCCCTGGAGGTTGGAGACGGGGGCAGGGCTGGCAGCCAGAGCTaGGGTAGCCATGGTGCGGTTCAGCAGCGGATTGGGTGGCGTGCT +
Preference number: 5 (lower is better)
Translates to: GSLEVGDGGRAGSQS*GSHGAVQQRIGWRA
Trigger: AGCACGCCACCCAATCCGCTGCTGAACCGCACCATGGCTACCGCAGCTCTGGCTGCCAGCCCTGCCCCCGTCTCCAACCTCCAGGGACCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS GCA 90 bp GGGTGTCAGCATCAAAGGTGTCTTGGCGGGATAGCGCCCGCAGGGTaGCTGCCCGGCCAGGTGGGTGGTTGCTGGGGTAAAGGCCTGGGG +
Preference number: 5 (lower is better)
Translates to: GCQHQRCLGGIAPAG*LPGQVGGCWGKGLG
Trigger: CCCCAGGCCTTTACCCCAGCAACCACCCACCTGGCCGGGCAGGCACCCTGCGGGCGCTATCCCGCCAAGACACCTTTGATGCTGACACCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017552.13
ENSMUST00000103144.10
CDS GCA 90 bp CTGTACCTGGAGGTTGGAGACGGGGGCAGGGCTGGCAGCCAGAGCTaGGGTAGCCATGGTGCGGTTCAGCAGCGGATTGGGTGGCGTGCT +
Preference number: 5 (lower is better)
Translates to: LYLEVGDGGRAGSQS*GSHGAVQQRIGWRA
Trigger: AGCACGCCACCCAATCCGCTGCTGAACCGCACCATGGCTACCGCAGCTCTGGCTGCCAGCCCTGCCCCCGTCTCCAACCTCCAGGTACAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107561.9
ENSMUST00000107562.2
CDS GCA 90 bp AGCGGATGTAGACGCCTTGTCCCCAGCCCTCCAGCTCATTCTTATTaGGCCCCAGAACCGGCCCACCACCCTCCGCACAGTAGCGGGCCT +
Preference number: 5 (lower is better)
Translates to: SGCRRLVPSPPAHSY*APEPAHHPPHSSGP
Trigger: AGGCCCGCTACTGTGCGGAGGGTGGTGGGCCGGTTCTGGGGCGCAATAAGAATGAGCTGGAGGGCTGGGGACAAGGCGTCTACATCCGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017552.13
ENSMUST00000103144.10
CDS-3UTR CAA 90 bp AGCCTGCACCCAGCTCTGCTCCCCAAGGGTTTCCAAGCCGTGCCTTTCACCCACCGGTTCAGCAGCGGATaGGGTGGCGTGCTGCTAGGC +
Preference number: 5 (lower is better)
Translates to: SLHPALLPKGFQAVPFTHRFSSG*GGVLLG
Trigger: GCCTAGCAGCACGCCACCCAATCCGCTGCTGAACCG...GTGGGTGAAAGGCACGGCTTGGAAACCCTTGGGGAGCAGAGCTGGGTGCAGGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS CCA 90 bp CCCCAGAAGCTGAGATTTCTCCTGAGCGAGGTGAGCACCTGTACCTaGAGGTTGGAGACGGGGGCAGGGCTGGCAGCCAGAGCTGCGGTA +
Preference number: 5 (lower is better)
Translates to: PQKLRFLLSEVSTCT*RLETGAGLAARAAV
Trigger: TACCGCAGCTCTGGCTGCCAGCCCTGCCCCCGTCTCCAACCTCCAGGTACAGGTGCTCACCTCGCTCAGGAGAAATCTCAGCTTCTGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107561.9
ENSMUST00000107562.2
CDS GCA 90 bp CCTGACTTGCTGGAGCTGAGGCGGTTCTGGCGCAGGGTCTGTTCCTaGAGCAGACGAAGGCTGTCCAGTTTGACCGGGCTGGGGATGAAG +
Preference number: 5 (lower is better)
Translates to: PDLLELRRFWRRVCS*SRRRLSSLTGLGMK
Trigger: CTTCATCCCCAGCCCGGTCAAACTGGACAGCCTTCGTCTGCTGCAGGAACAGACCCTGCGCCAGAACCGCCTCAGCTCCAGCAAGTCAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000017552.13
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107561.9
ENSMUST00000107562.2
CDS GCA 90 bp TGTCCACACACGAGTCTCCCGGCTCCGTGTAGGCAGAATTTCGGCTaGCGGGGGTGTCAGCATCAAAGGTGTCTTGGCGGGATAGCGCCC +
Preference number: 5 (lower is better)
Translates to: CPHTSLPAPCRQNFG*RGCQHQRCLGGIAP
Trigger: GGGCGCTATCCCGCCAAGACACCTTTGATGCTGACACCCCCGGCAGCCGAAATTCTGCCTACACGGAGCCGGGAGACTCGTGTGTGGACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017552.13
ENSMUST00000103144.10
CDS CCA 90 bp CGTGCTCTGTCGATTTCTGCTTCTGTTTGGCACTGGCAGGGGGTGTaGGGCGGCGGGTGCCAGTCACCACATCTCCCAGACTGGAACTGG +
Preference number: 5 (lower is better)
Translates to: RALSISASVWHWQGV*GGGCQSPHLPDWNW
Trigger: CCAGTTCCAGTCTGGGAGATGTGGTGACTGGCACCCGCCGCCCCACACCCCCTGCCAGTGCCAAACAGAAGCAGAAATCGACAGAGCACG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017552.13
ENSMUST00000107562.2
CDS CCA 90 bp GGGGGCACGTGCTCTGTCTTCTTAAAGAAGGGGATGCGCTTGCCGTaGGGTGGCGGCGTGGTGACACTGCTCACGCTAGTCTTGGCTGAG +
Preference number: 5 (lower is better)
Translates to: GGTCSVFLKKGMRLP*GGGVVTLLTLVLAE
Trigger: CTCAGCCAAGACTAGCGTGAGCAGTGTCACCACGCCGCCACCCCACGGCAAGCGCATCCCCTTCTTTAAGAAGACAGAGCACGTGCCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107561.9
CDS-3UTR CAA 90 bp GTGGTCACCTCACGGGTACCAACACATAGAGCCTGTCCCCTGGGGCCTCAGGGTCGAAGGCTGTCCAGTTaGACCGGGCTGGGGATGAAG +
Preference number: 5 (lower is better)
Translates to: VVTSRVPTHRACPLGPQGRRLSS*TGLGMK
Trigger: CTTCATCCCCAGCCCGGTCAAACTGGACAGCCTTCG...ACCCTGAGGCCCCAGGGGACAGGCTCTATGTGTTGGTACCCGTGAGGTGACCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CAA 90 bp GGGCAACATTGGCACAGGAGGTGGCGAGACAGGCGTGAGGTGCCCATCCCTGAGTGTTTGCTGGGGTTGTaGAGGACGGAGCGTTTGGCC +
Preference number: 5 (lower is better)
Translates to: GQHWHRRWRDRREVPIPECLLGL*RTERLA
Trigger: GGCCAAACGCTCCGTCCTCAACAACCCCAGCAAACA...CTCAGGGATGGGCACCTCACGCCTGTCTCGCCACCTCCTGTGCCAATGTTGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CAA 90 bp CAACAGACAGGAGATGCAGTCCTAAGGGACCAGTCCCAGGGAGGCAGCACCAGCCGAAGGCTGTCCAGTTaGACCGGGCTGGGGATGAAG +
Preference number: 5 (lower is better)
Translates to: QQTGDAVLRDQSQGGSTSRRLSS*TGLGMK
Trigger: CTTCATCCCCAGCCCGGTCAAACTGGACAGCCTTCG...GCTGGTGCTGCCTCCCTGGGACTGGTCCCTTAGGACTGCATCTCCTGTCTGTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CAA 90 bp GGGCAACATTGGCACAGGAGGTGGCGAGACAGGCGTGAGGTGCCCATCCCTGAGCGAAGCTGTTGGATGTaGTATCCGAGGACGTACTCC +
Preference number: 5 (lower is better)
Translates to: GQHWHRRWRDRREVPIPERSCWM*YPRTYS
Trigger: GGAGTACGTCCTCGGATACAACATCCAACAGCTTCG...CTCAGGGATGGGCACCTCACGCCTGTCTCGCCACCTCCTGTGCCAATGTTGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CAA 90 bp AGCCTGCACCCAGCTCTGCTCCCCAAGGGTTTCCAAGCCGTGCCTTTCACCCACAGGCTGGAACGCGTGTaGGAGCGCTCAATGATGATG +
Preference number: 5 (lower is better)
Translates to: SLHPALLPKGFQAVPFTHRLERV*ERSMMM
Trigger: CATCATCATTGAGCGCTCCAACACGCGTTCCAGCCT...GTGGGTGAAAGGCACGGCTTGGAAACCCTTGGGGAGCAGAGCTGGGTGCAGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CAA 90 bp GTCTCCACACCCAGGTGGCACGGAGATGTGGGGCTCAGATGCAGAGGGCCCCTCAGCCTCTGCAGTACCTaGGGAGATGTGATCTTGATG +
Preference number: 5 (lower is better)
Translates to: VSTPRWHGDVGLRCRGPLSLCST*GDVILM
Trigger: CATCAAGATCACATCTCCCAAGGTACTGCAGAGGCT...GAGGGGCCCTCTGCATCTGAGCCCCACATCTCCGTGCCACCTGGGTGTGGAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CAA 90 bp AAAACGAGGGACACAGCGCCCCCTGGAGGCAAGACACATCTTGGGTGGTGTGCCTCCAGCTCATTCTTATaGCGCCCCAGAACCGGCCCA +
Preference number: 5 (lower is better)
Translates to: KTRDTAPPGGKTHLGWCASSSFL*RPRTGP
Trigger: TGGGCCGGTTCTGGGGCGCAATAAGAATGAGCTGGA...GGCACACCACCCAAGATGTGTCTTGCCTCCAGGGGGCGCTGTGTCCCTCGTTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CAA 90 bp TCGGACTTATATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAAAGAAGGGGATGCGCTaGCCGTGGGGTGGCGGCGTG +
Preference number: 5 (lower is better)
Translates to: SDLYGVPIRPQVQQTGDAKKGMR*PWGGGV
Trigger: CACGCCGCCACCCCACGGCAAGCGCATCCCCTTCTT...TGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATATAAGTCCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CAA 90 bp GGACTTATATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTCGGTTCAGCAGCGGATaGGGTGGCGTGCTGCTAGGC +
Preference number: 5 (lower is better)
Translates to: GLIWGPHQASSPTDRRCSRFSSG*GGVLLG
Trigger: GCCTAGCAGCACGCCACCCAATCCGCTGCTGAACCG...ACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATATAAGTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CAA 90 bp GCAGCCTGCACCCAGCTCTGCTCCCCAAGGGTTTCCAAGCCGTGCCTTTCACCCTCAATGATGATGTGTTaGCTGGGGTTGTTGAGGACG +
Preference number: 5 (lower is better)
Translates to: AACTQLCSPRVSKPCLSPSMMMC*LGLLRT
Trigger: CGTCCTCAACAACCCCAGCAAACACATCATCATTGA...GGGTGAAAGGCACGGCTTGGAAACCCTTGGGGAGCAGAGCTGGGTGCAGGCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CAA 90 bp GTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTCCTAAGGGACCAGAGGCTGGAACGCGTGTaGGAGCGCTCAATGATGATG +
Preference number: 5 (lower is better)
Translates to: VPIRPQVQQTGDAVLRDQRLERV*ERSMMM
Trigger: CATCATCATTGAGCGCTCCAACACGCGTTCCAGCCT...CTGGTCCCTTAGGACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CAA 90 bp ATTGGGGAAGATTCAGCGGGCTCTCTTCAGGAAAAGCACCCAACCTTTCCCAAGCGGCCCCGGTTCCTGTaGTCGGTCATCTCCTCCTCA +
Preference number: 5 (lower is better)
Translates to: IGEDSAGSLQEKHPTFPKRPRFL*SVISSS
Trigger: TGAGGAGGAGATGACCGACAACAGGAACCGGGGCCG...CTTGGGAAAGGTTGGGTGCTTTTCCTGAAGAGAGCCCGCTGAATCTTCCCCAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS TCA 90 bp AGCTGTTGGATGTTGTATCCGAGGACGTACTCCCGTCTGACCTTTTaGACCGCCCTTTCCTCTTGCTGTACTTGCCCTGTGGGCTGGGGT +
Preference number: 5 (lower is better)
Translates to: SCWMLYPRTYSRLTF*TALSSCCTCPVGWG
Trigger: ACCCCAGCCCACAGGGCAAGTACAGCAAGAGGAAAGGGCGGTTCAAAAGGTCAGACGGGAGTACGTCCTCGGATACAACATCCAACAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000017552.13
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107562.2
CDS TCA 90 bp GCGGACGAAGCTGTTGGATGTTGTATCCGAGGACGTACTCCCGTCTaGCCTTTTGAACCGCCCTTTCCTCTTGCTGTACTTGCCCTGTGG +
Preference number: 5 (lower is better)
Translates to: ADEAVGCCIRGRTPV*PFEPPFPLAVLALW
Trigger: CCACAGGGCAAGTACAGCAAGAGGAAAGGGCGGTTCAAAAGGTCAGACGGGAGTACGTCCTCGGATACAACATCCAACAGCTTCGTCCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000017552.13
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107562.2
CDS-3UTR CAA 90 bp AGATTCAGCGGGCTCTCTTCAGGAAAAGCACCCAACCTTTCCCAAGTACCCCTGCTCCATAGGGATCTCTaGGGAAGGTGGGTAAGGGCC +
Preference number: 5 (lower is better)
Translates to: RFSGLSSGKAPNLSQVPLLHRDL*GRWVRA
Trigger: GGCCCTTACCCACCTTCCCAAGAGATCCCTATGGAG...CAGGGGTACTTGGGAAAGGTTGGGTGCTTTTCCTGAAGAGAGCCCGCTGAATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CAA 90 bp GGACTTATATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTTGTTTGCTGGGGTTGTaGAGGACGGAGCGTTTGGCC +
Preference number: 5 (lower is better)
Translates to: GLIWGPHQASSPTDRRCSCLLGL*RTERLA
Trigger: GGCCAAACGCTCCGTCCTCAACAACCCCAGCAAACA...ACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATATAAGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CAA 90 bp AAAACGAGGGACACAGCGCCCCCTGGAGGCAAGACACATCTTGGGTGGTGTGCCGATTGTAGCCAACATTaGTCCGAACAGCAAAAGCCA +
Preference number: 5 (lower is better)
Translates to: KTRDTAPPGGKTHLGWCADCSQH*SEQQKP
Trigger: TGGCTTTTGCTGTTCGGACAAATGTTGGCTACAATC...GGCACACCACCCAAGATGTGTCTTGCCTCCAGGGGGCGCTGTGTCCCTCGTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CAA 90 bp TATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTCCTAAGGATGTGTAGGAAGTCCTaGGGCTCAAAGGTGATGGCC +
Preference number: 5 (lower is better)
Translates to: YGVPIRPQVQQTGDAVLRMCRKS*GSKVMA
Trigger: GGCCATCACCTTTGAGCCCAAGGACTTCCTACACAT...CCTTAGGACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CAA 90 bp TATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTCCTAAGGATGTGTTTGCTGGGGTaGTTGAGGACGGAGCGTTTG +
Preference number: 5 (lower is better)
Translates to: YGVPIRPQVQQTGDAVLRMCLLG*LRTERL
Trigger: CAAACGCTCCGTCCTCAACAACCCCAGCAAACACAT...CCTTAGGACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CAA 90 bp TGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTCCTAAGGGAAGCCTCTGCAGTACCTaGGGAGATGTGATCTTGATG +
Preference number: 5 (lower is better)
Translates to: WGPHQASSPTDRRCSPKGSLCST*GDVILM
Trigger: CATCAAGATCACATCTCCCAAGGTACTGCAGAGGCT...TCCCTTAGGACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CAA 90 bp AAGGACCTCCCAAGAGCTGGGATAATTACCACCAAAGAAACCCCAAGCTTTAAGGCGGATGTAGACGCCTaGTCCCCAGCCCTCCAGCTC +
Preference number: 5 (lower is better)
Translates to: KDLPRAGIITTKETPSFKADVDA*SPALQL
Trigger: GAGCTGGAGGGCTGGGGACAAGGCGTCTACATCCGC...CTTAAAGCTTGGGGTTTCTTTGGTGGTAATTATCCCAGCTCTTGGGAGGTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CAA 90 bp ATTGGGGAAGATTCAGCGGGCTCTCTTCAGGAAAAGCACCCAACCTTTCCCAAGCTCCCGTCTGACCTTTaGAACCGCCCTTTCCTCTTG +
Preference number: 5 (lower is better)
Translates to: IGEDSAGSLQEKHPTFPKLPSDL*NRPFLL
Trigger: CAAGAGGAAAGGGCGGTTCAAAAGGTCAGACGGGAG...CTTGGGAAAGGTTGGGTGCTTTTCCTGAAGAGAGCCCGCTGAATCTTCCCCAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CAA 90 bp TGGGGAAGATTCAGCGGGCTCTCTTCAGGAAAAGCACCCAACCTTTCCCAAGTATGGCGGACGAAGCTGTaGGATGTTGTATCCGAGGAC +
Preference number: 5 (lower is better)
Translates to: WGRFSGLSSGKAPNLSQVWRTKL*DVVSED
Trigger: GTCCTCGGATACAACATCCAACAGCTTCGTCCGCCA...TACTTGGGAAAGGTTGGGTGCTTTTCCTGAAGAGAGCCCGCTGAATCTTCCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CAA 90 bp TATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTCCTAAGGTCAATGATGATGTGTTaGCTGGGGTTGTTGAGGACG +
Preference number: 5 (lower is better)
Translates to: YGVPIRPQVQQTGDAVLRSMMMC*LGLLRT
Trigger: CGTCCTCAACAACCCCAGCAAACACATCATCATTGA...CCTTAGGACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CAA 90 bp TCGGACTTATATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCACTCCGAGGCTGCTATTaGGACATTGAGGTGTTTGGA +
Preference number: 5 (lower is better)
Translates to: SDLYGVPIRPQVQQTGDALRGCY*DIEVFG
Trigger: TCCAAACACCTCAATGTCCAAATAGCAGCCTCGGAG...TGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATATAAGTCCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CAA 90 bp AGACCCAAGGTCCTTAGGAAGCCCCTGGATGGTGGTCACCTCACGGGTACCAACATCCACCAGTCATTATaGTACTTCTCCTTGATGTGT +
Preference number: 5 (lower is better)
Translates to: RPKVLRKPLDGGHLTGTNIHQSL*YFSLMC
Trigger: ACACATCAAGGAGAAGTACAATAATGACTGGTGGAT...GTTGGTACCCGTGAGGTGACCACCATCCAGGGGCTTCCTAAGGACCTTGGGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CAA 90 bp CCAGAGAATGCTGCTAGGAAACTGTTATGTTATGGGATGGACATGGTGGGGGATATGTGTAGGAAGTCCTaGGGCTCAAAGGTGATGGCC +
Preference number: 5 (lower is better)
Translates to: PENAARKLLCYGMDMVGDMCRKS*GSKVMA
Trigger: GGCCATCACCTTTGAGCCCAAGGACTTCCTACACAT...ATCCCCCACCATGTCCATCCCATAACATAACAGTTTCCTAGCAGCATTCTCTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CAA 90 bp CCAGAGAATGCTGCTAGGAAACTGTTATGTTATGGGATGGACATGGTGGGGGATATGTGTTTGCTGGGGTaGTTGAGGACGGAGCGTTTG +
Preference number: 5 (lower is better)
Translates to: PENAARKLLCYGMDMVGDMCLLG*LRTERL
Trigger: CAAACGCTCCGTCCTCAACAACCCCAGCAAACACAT...ATCCCCCACCATGTCCATCCCATAACATAACAGTTTCCTAGCAGCATTCTCTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CAA 90 bp TATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTCCTAAGGATCCACCAGTCATTATaGTACTTCTCCTTGATGTGT +
Preference number: 5 (lower is better)
Translates to: YGVPIRPQVQQTGDAVLRIHQSL*YFSLMC
Trigger: ACACATCAAGGAGAAGTACAATAATGACTGGTGGAT...CCTTAGGACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CAA 90 bp GGACTTATATGGGGTCCCCATCAGGCCTCAAGTCCAACAGACAGGAGATGCAGTTTATTGTACTTCTCCTaGATGTGTAGGAAGTCCTTG +
Preference number: 5 (lower is better)
Translates to: GLIWGPHQASSPTDRRCSLLYFS*MCRKSL
Trigger: CAAGGACTTCCTACACATCAAGGAGAAGTACAATAA...ACTGCATCTCCTGTCTGTTGGACTTGAGGCCTGATGGGGACCCCATATAAGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107561.9
CDS-3UTR CAA 90 bp TGGGGAAGATTCAGCGGGCTCTCTTCAGGAAAAGCACCCAACCTTTCCCAAGTATTATTGTACTTCTCCTaGATGTGTAGGAAGTCCTTG +
Preference number: 5 (lower is better)
Translates to: WGRFSGLSSGKAPNLSQVLLYFS*MCRKSL
Trigger: CAAGGACTTCCTACACATCAAGGAGAAGTACAATAA...TACTTGGGAAAGGTTGGGTGCTTTTCCTGAAGAGAGCCCGCTGAATCTTCCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS-3UTR CAA 90 bp CCAAGAGCTGGGATAATTACCACCAAAGAAACCCCAAGCTTTAAGCAAAGGCATCTCCGAGGCTGCTATTaGGACATTGAGGTGTTTGGA +
Preference number: 5 (lower is better)
Translates to: PRAGIITTKETPSFKQRHLRGCY*DIEVFG
Trigger: TCCAAACACCTCAATGTCCAAATAGCAGCCTCGGAG...ATGCCTTTGCTTAAAGCTTGGGGTTTCTTTGGTGGTAATTATCCCAGCTCTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017552.13
CDS CCA 72 bp CCAGCGGCTGGTCCCCGGAAGCAAGGTAGGGTCCCATaGCGTGCTCCTGAGGCTGGGCCACCGCGTCGCCTC +
Preference number: 6 (lower is better)
Translates to: PAAGPRKQGRVP*RAPEAGPPRRL
Trigger: GAGGCGACGCGGTGGCCCAGCCTCAGGAGCACGCCATGGGACCCTACCTTGCTTCCGGGGACCAGCCGCTGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103144.10
CDS GCA 72 bp GAGGTTGGAGACGGGGGCAGGGCTGGCAGCCAGAGCTaGGGTAGCCATGGTGCGGTTCAGCAGCGGATTGGG +
Preference number: 6 (lower is better)
Translates to: EVGDGGRAGSQS*GSHGAVQQRIG
Trigger: CCCAATCCGCTGCTGAACCGCACCATGGCTACCGCAGCTCTGGCTGCCAGCCCTGCCCCCGTCTCCAACCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000017552.13
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107561.9
ENSMUST00000107562.2
CDS CCA 72 bp TTTCGGCTGCCGGGGGTGTCAGCATCAAAGGTGTCTTaGCGGGATAGCGCCCGCAGGGTGCCTGCCCGGCCA +
Preference number: 6 (lower is better)
Translates to: FRLPGVSASKVS*RDSARRVPARP
Trigger: TGGCCGGGCAGGCACCCTGCGGGCGCTATCCCGCCAAGACACCTTTGATGCTGACACCCCCGGCAGCCGAAA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017552.13
ENSMUST00000103144.10
CDS GCA 72 bp CATCAAAGGTGTCTTGGCGGGATAGCGCCCGCAGGGTaGCTGCCCGGCCAGGTGGGTGGTTGCTGGGGTAAA +
Preference number: 6 (lower is better)
Translates to: HQRCLGGIAPAG*LPGQVGGCWGK
Trigger: TTTACCCCAGCAACCACCCACCTGGCCGGGCAGGCACCCTGCGGGCGCTATCCCGCCAAGACACCTTTGATG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017552.13
ENSMUST00000103144.10
CDS GCA 72 bp CTGGAGCTGAGGCGGTTCTGGCGCAGGGTCTGTTCCTaGAGCAGACGAAGGCTGTCCAGTTTGACCGGGCTG +
Preference number: 6 (lower is better)
Translates to: LELRRFWRRVCS*SRRRLSSLTGL
Trigger: CAGCCCGGTCAAACTGGACAGCCTTCGTCTGCTGCAGGAACAGACCCTGCGCCAGAACCGCCTCAGCTCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000017552.13
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107561.9
ENSMUST00000107562.2
CDS GCA 72 bp AGACGCCTTGTCCCCAGCCCTCCAGCTCATTCTTATTaGGCCCCAGAACCGGCCCACCACCCTCCGCACAGT +
Preference number: 6 (lower is better)
Translates to: RRLVPSPPAHSY*APEPAHHPPHS
Trigger: ACTGTGCGGAGGGTGGTGGGCCGGTTCTGGGGCGCAATAAGAATGAGCTGGAGGGCTGGGGACAAGGCGTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017552.13
ENSMUST00000103144.10
CDS CCA 72 bp GCACGTGCTCTGTCGATTTCTGCTTCTGTTTGGCACTaGCAGGGGGTGTGGGGCGGCGGGTGCCAGTCACCA +
Preference number: 6 (lower is better)
Translates to: ARALSISASVWH*QGVWGGGCQSP
Trigger: TGGTGACTGGCACCCGCCGCCCCACACCCCCTGCCAGTGCCAAACAGAAGCAGAAATCGACAGAGCACGTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017552.13
ENSMUST00000107562.2
CDS CAA 72 bp CTGTGGGCTGGGGTCGAAGACCTCCATAGGGATCTCTaGGGAAGGTGGGTAAGGGCCCCGGGACATGCCGCT +
Preference number: 6 (lower is better)
Translates to: LWAGVEDLHRDL*GRWVRAPGHAA
Trigger: AGCGGCATGTCCCGGGGCCCTTACCCACCTTCCCAAGAGATCCCTATGGAGGTCTTCGACCCCAGCCCACAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000017552.13
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107562.2
CDS CAA 72 bp AGAGCTGCGGTAGCCATGGTGCGGTTCAGCAGCGGATaGGGTGGCGTGCTGCTAGGCGGATGTGTGGCCTTC +
Preference number: 6 (lower is better)
Translates to: RAAVAMVRFSSG*GGVLLGGCVAF
Trigger: GAAGGCCACACATCCGCCTAGCAGCACGCCACCCAATCCGCTGCTGAACCGCACCATGGCTACCGCAGCTCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000017552.13
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107561.9
ENSMUST00000107562.2
CDS CAA 90 bp GTACTTGCCCTGTGGGCTGGGGTCGAAGACCTCCATAGGGATCTCTaGGGAAGGTGGGTAAGGGCCCCGGGACATGCCGCTCTTCTGGAC +
Preference number: 6 (lower is better)
Translates to: VLALWAGVEDLHRDL*GRWVRAPGHAALLD
Trigger: GTCCAGAAGAGCGGCATGTCCCGGGGCCCTTACCCACCTTCCCAAGAGATCCCTATGGAGGTCTTCGACCCCAGCCCACAGGGCAAGTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000017552.13
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107562.2
CDS CCA 72 bp GGGGTCGAAGACCTCCATAGGGATCTCTTGGGAAGGTaGGTAAGGGCCCCGGGACATGCCGCTCTTCTGGAC +
Preference number: 6 (lower is better)
Translates to: GVEDLHRDLLGR*VRAPGHAALLD
Trigger: GTCCAGAAGAGCGGCATGTCCCGGGGCCCTTACCCACCTTCCCAAGAGATCCCTATGGAGGTCTTCGACCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000017552.13
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107562.2
CDS CCA 72 bp TCGATTTCTGCTTCTGTTTGGCACTGGCAGGGGGTGTaGGGCGGCGGGTGCCAGTCACCACATCTCCCAGAC +
Preference number: 6 (lower is better)
Translates to: SISASVWHWQGV*GGGCQSPHLPD
Trigger: GTCTGGGAGATGTGGTGACTGGCACCCGCCGCCCCACACCCCCTGCCAGTGCCAAACAGAAGCAGAAATCGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017552.13
ENSMUST00000107562.2
CDS CCA 72 bp CTGAGATTTCTCCTGAGCGAGGTGAGCACCTGTACCTaGAGGTTGGAGACGGGGGCAGGGCTGGCAGCCAGA +
Preference number: 6 (lower is better)
Translates to: LRFLLSEVSTCT*RLETGAGLAAR
Trigger: TCTGGCTGCCAGCCCTGCCCCCGTCTCCAACCTCCAGGTACAGGTGCTCACCTCGCTCAGGAGAAATCTCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107561.9
ENSMUST00000107562.2
CDS CAA 90 bp TTCTGGCGCAGGGTCTGTTCCTGCAGCAGACGAAGGCTGTCCAGTTaGACCGGGCTGGGGATGAAGCCAACCTCGCAGCCTTCCTTCACC +
Preference number: 6 (lower is better)
Translates to: FWRRVCSCSRRRLSS*TGLGMKPTSQPSFT
Trigger: GGTGAAGGAAGGCTGCGAGGTTGGCTTCATCCCCAGCCCGGTCAAACTGGACAGCCTTCGTCTGCTGCAGGAACAGACCCTGCGCCAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000017552.13
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107561.9
ENSMUST00000107562.2
CDS GCA 72 bp GTGACACTGCTCACGCTAGTCTTGGCTGAGCCGCCGTaGTCCCCTAGCTCTGCCTCCTCCTCCTCTAACTCT +
Preference number: 6 (lower is better)
Translates to: VTLLTLVLAEPP*SPSSASSSSNS
Trigger: AGAGTTAGAGGAGGAGGAGGCAGAGCTAGGGGAGCACGGCGGCTCAGCCAAGACTAGCGTGAGCAGTGTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107561.9
CDS CCA 72 bp GGTTTGGTCTTGGCTTTCTCGAGCTGGGCTAAGGCCTaGCGCTCTGCCTCCTTCCTTAAGGCTTCCCGGTCC +
Preference number: 6 (lower is better)
Translates to: GLVLAFSSWAKA*RSASFLKASRS
Trigger: GGACCGGGAAGCCTTAAGGAAGGAGGCAGAGCGCCAGGCCTTAGCCCAGCTCGAGAAAGCCAAGACCAAACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000017552.13
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107561.9
ENSMUST00000107562.2
CDS CAA 72 bp AGGGTCTGTTCCTGCAGCAGACGAAGGCTGTCCAGTTaGACCGGGCTGGGGATGAAGCCAACCTCGCAGCCT +
Preference number: 6 (lower is better)
Translates to: RVCSCSRRRLSS*TGLGMKPTSQP
Trigger: AGGCTGCGAGGTTGGCTTCATCCCCAGCCCGGTCAAACTGGACAGCCTTCGTCTGCTGCAGGAACAGACCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000017552.13
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107561.9
ENSMUST00000107562.2
CDS CCA 72 bp TGTCTTCTTAAAGAAGGGGATGCGCTTGCCGTGGGGTaGCGGCGTGGTGACACTGCTCACGCTAGTCTTGGC +
Preference number: 6 (lower is better)
Translates to: CLLKEGDALAVG*RRGDTAHASLG
Trigger: GCCAAGACTAGCGTGAGCAGTGTCACCACGCCGCCACCCCACGGCAAGCGCATCCCCTTCTTTAAGAAGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107561.9
CDS CCA 72 bp TGCTCTGTCTTCTTAAAGAAGGGGATGCGCTTGCCGTaGGGTGGCGGCGTGGTGACACTGCTCACGCTAGTC +
Preference number: 6 (lower is better)
Translates to: CSVFLKKGMRLP*GGGVVTLLTLV
Trigger: GACTAGCGTGAGCAGTGTCACCACGCCGCCACCCCACGGCAAGCGCATCCCCTTCTTTAAGAAGACAGAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107561.9
CDS CCA 72 bp TGTAGGACTCTGCTGAGCCCTGGCGGACGAAGCTGTTaGATGTTGTATCCGAGGACGTACTCCCGTCTGACC +
Preference number: 6 (lower is better)
Translates to: CRTLLSPGGRSC*MLYPRTYSRLT
Trigger: GGTCAGACGGGAGTACGTCCTCGGATACAACATCCAACAGCTTCGTCCGCCAGGGCTCAGCAGAGTCCTACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000017552.13
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107562.2
CDS CAA 72 bp GTGCCAGTCACCACATCTCCCAGACTGGAACTGGAGTaGTCACCTGACTTGCTGGAGCTGAGGCGGTTCTGG +
Preference number: 6 (lower is better)
Translates to: VPVTTSPRLELE*SPDLLELRRFW
Trigger: CCAGAACCGCCTCAGCTCCAGCAAGTCAGGTGACAACTCCAGTTCCAGTCTGGGAGATGTGGTGACTGGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000017552.13
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107561.9
ENSMUST00000107562.2
CDS CAA 90 bp AAGCTGTTGGATGTTGTATCCGAGGACGTACTCCCGTCTGACCTTTaGAACCGCCCTTTCCTCTTGCTGTACTTGCCCTGTGGGCTGGGG +
Preference number: 6 (lower is better)
Translates to: KLLDVVSEDVLPSDL*NRPFLLLYLPCGLG
Trigger: CCCCAGCCCACAGGGCAAGTACAGCAAGAGGAAAGGGCGGTTCAAAAGGTCAGACGGGAGTACGTCCTCGGATACAACATCCAACAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000017552.13
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107562.2
CDS TCA 72 bp ATGTTGTATCCGAGGACGTACTCCCGTCTGACCTTTTaGACCGCCCTTTCCTCTTGCTGTACTTGCCCTGTG +
Preference number: 6 (lower is better)
Translates to: MLYPRTYSRLTF*TALSSCCTCPV
Trigger: CACAGGGCAAGTACAGCAAGAGGAAAGGGCGGTTCAAAAGGTCAGACGGGAGTACGTCCTCGGATACAACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000017552.13
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107562.2
CDS CAA 72 bp GATGTTGTATCCGAGGACGTACTCCCGTCTGACCTTTaGAACCGCCCTTTCCTCTTGCTGTACTTGCCCTGT +
Preference number: 6 (lower is better)
Translates to: DVVSEDVLPSDL*NRPFLLLYLPC
Trigger: ACAGGGCAAGTACAGCAAGAGGAAAGGGCGGTTCAAAAGGTCAGACGGGAGTACGTCCTCGGATACAACATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000017552.13
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107562.2
CDS CAA 72 bp GCACCTCATCCCCTGGAGACGGATTGTAGCCAACATTaGTCCGAACAGCAAAAGCCACTGGTTTGGTCTTGG +
Preference number: 6 (lower is better)
Translates to: APHPLETDCSQH*SEQQKPLVWSW
Trigger: CCAAGACCAAACCAGTGGCTTTTGCTGTTCGGACAAATGTTGGCTACAATCCGTCTCCAGGGGATGAGGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000017552.13
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107561.9
ENSMUST00000107562.2
CDS CAA 90 bp CCTGTACAGGCACCTCATCCCCTGGAGACGGATTGTAGCCAACATTaGTCCGAACAGCAAAAGCCACTGGTTTGGTCTTGGCTTTCTCGA +
Preference number: 6 (lower is better)
Translates to: PVQAPHPLETDCSQH*SEQQKPLVWSWLSR
Trigger: TCGAGAAAGCCAAGACCAAACCAGTGGCTTTTGCTGTTCGGACAAATGTTGGCTACAATCCGTCTCCAGGGGATGAGGTGCCTGTACAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000017552.13
ENSMUST00000092736.11
ENSMUST00000103144.10
ENSMUST00000107561.9
ENSMUST00000107562.2