RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CACHD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028532

Ensembl transcript IDs: ENSMUST00000030257.15, ENSMUST00000097955.3

Found 392 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCACGTTCATGGGCCTCGGCTCCAGCTTTCTTCCAGTTAAGGGACTaGGTGCTTCTGGTGCTGGGAGCACTCCTCCGGCTCAGTTCCCTC +
Preference number: 1 (lower is better)
Translates to: PRSWASAPAFFQLRD*VLLVLGALLRLSSL
Trigger: GAGGGAACTGAGCCGGAGGAGTGCTCCCAGCACCAGAAGCACTCAGTCCCTTAACTGGAAGAAAGCTGGAGCCGAGGCCCATGAACGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
3UTR GCA 90 bp CAGTGGAACCACACTGGACAGAGTGCGTCACGTGACAGGGCTGTATaGCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCA +
Preference number: 1 (lower is better)
Translates to: QWNHTGQSASRDRAV*RLISSQRILCHAGP
Trigger: TGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACAGCCCTGTCACGTGACGCACTCTGTCCAGTGTGGTTCCACTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
3UTR TCA 90 bp GTAGGCAGCAAACCAGTGGAACCACACTGGACAGAGTGCGTCACGTaGCAGGGCTGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTG +
Preference number: 1 (lower is better)
Translates to: VGSKPVEPHWTECVT*QGCMPAHFFAENSV
Trigger: CACAGAATTCTCTGCGAAGAAATGAGCCGGCATACAGCCCTGTCACGTGACGCACTCTGTCCAGTGTGGTTCCACTGGTTTGCTGCCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
3UTR-3UTR TCA 90 bp CCAACTATATATAAATGGAGATTTACACACACACGGTGCAAAGAACGCCTTCATAGCCAGGGTGAAGGCTaGGAATCTCTCAGTTCCTTT +
Preference number: 2 (lower is better)
Translates to: PTIYKWRFTHTRCKERLHSQGEG*ESLSSF
Trigger: AAAGGAACTGAGAGATTCTCAGCCTTCACCCTGGCT...ATGAAGGCGTTCTTTGCACCGTGTGTGTGTAAATCTCCATTTATATATAGTTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
3UTR-3UTR CCA 90 bp CCAACTATATATAAATGGAGATTTACACACACACGGTGCAAAGAACGCCTTCATTTTGATGAAGCCCCGTaGAAGCCAAAAGCAGTTTGG +
Preference number: 2 (lower is better)
Translates to: PTIYKWRFTHTRCKERLHFDEAP*KPKAVW
Trigger: CCAAACTGCTTTTGGCTTCCACGGGGCTTCATCAAA...ATGAAGGCGTTCTTTGCACCGTGTGTGTGTAAATCTCCATTTATATATAGTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
3UTR-3UTR CAA 90 bp GGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGGTAGCCAGTTCCCTCTATGTTaGTCTGTGTTGGCGGTGTGC +
Preference number: 3 (lower is better)
Translates to: GGVQVPLGNTGVRPAAGSQFPLC*SVLAVC
Trigger: GCACACCGCCAACACAGACAAACATAGAGGGAACTG...GCTACCAGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
3UTR CCA 72 bp CTCCTCCGGCTCAGTTCCCTCTATGTTTGTCTGTGTTaGCGGTGTGCCTACGGTCCCATTCCATCATGTCAG +
Preference number: 3 (lower is better)
Translates to: LLRLSSLYVCLC*RCAYGPIPSCQ
Trigger: CTGACATGATGGAATGGGACCGTAGGCACACCGCCAACACAGACAAACATAGAGGGAACTGAGCCGGAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
3UTR GCA 72 bp CACACTGGACAGAGTGCGTCACGTGACAGGGCTGTATaGCGGCTCATTTCTTCGCAGAGAATTCTGTGTCAC +
Preference number: 3 (lower is better)
Translates to: HTGQSASRDRAV*RLISSQRILCH
Trigger: GTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACAGCCCTGTCACGTGACGCACTCTGTCCAGTGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
3UTR CCA 72 bp TTCCTTGTTTGTTTGTTTGTTTGTTTGTGTGTTTTGTaGATGAGGACAGTGGGCAGATCACCAGTTAAATTA +
Preference number: 3 (lower is better)
Translates to: FLVCLFVCLCVL*MRTVGRSPVKL
Trigger: TAATTTAACTGGTGATCTGCCCACTGTCCTCATCCACAAAACACACAAACAAACAAACAAACAAACAAGGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
3UTR CCA 72 bp AGTAGATTTCGTAGAAACCTAAGGAAAACCATCACATaGGAGGTGGAAATGAATTCTAAAGGAATGAAGTTT +
Preference number: 3 (lower is better)
Translates to: SRFRRNLRKTIT*EVEMNSKGMKF
Trigger: AAACTTCATTCCTTTAGAATTCATTTCCACCTCCCATGTGATGGTTTTCCTTAGGTTTCTACGAAATCTACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp GGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGGTAGCGCCAGCCTCCGCATCTaGCTCGCCAGCACTTGCGCC +
Preference number: 4 (lower is better)
Translates to: GGVQVPLGNTGVRPAAGSASLRI*LASTCA
Trigger: GGCGCAAGTGCTGGCGAGCCAGATGCGGAGGCTGGC...GCTACCAGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp GGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGGTAGCGTGGCTCAGCAGGGCTaGAGTCTGAGGCGGGGTGTC +
Preference number: 4 (lower is better)
Translates to: GGVQVPLGNTGVRPAAGSVAQQG*SLRRGV
Trigger: GACACCCCGCCTCAGACTGCAGCCCTGCTGAGCCAC...GCTACCAGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp GGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGGTAGCGCGCCTCGTCCAGGATaGAGAAGTCGGCGTCGGCCA +
Preference number: 4 (lower is better)
Translates to: GGVQVPLGNTGVRPAAGSAPRPG*RSRRRP
Trigger: TGGCCGACGCCGACTTCTCCATCCTGGACGAGGCGC...GCTACCAGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp GGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGGTAGCAGTCTCGTCCTGGGTTaGAGGCTCGGCTGTTCACGG +
Preference number: 4 (lower is better)
Translates to: GGVQVPLGNTGVRPAAGSSLVLG*RLGCSR
Trigger: CCGTGAACAGCCGAGCCTTCAACCCAGGACGAGACT...GCTACCAGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp AGTAATGGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTTGGTCTCTGGCTGGCTaGGGTGCTCATAGGGGGAGG +
Preference number: 4 (lower is better)
Translates to: SNGGVQVPLGNTGVRPAAWSLAG*GAHRGR
Trigger: CCTCCCCCTATGAGCACCTCAGCCAGCCAGAGACCA...AGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACCATTACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp GGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGGTAGCCTGCTGTTGACACACTaGTGCAGGGCATCTTGCAGG +
Preference number: 4 (lower is better)
Translates to: GGVQVPLGNTGVRPAAGSLLLTH*CRASCR
Trigger: CCTGCAAGATGCCCTGCAGCAGTGTGTCAACAGCAG...GCTACCAGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp CGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGTGCAGCAGTCCTGGATaGCGGTCAGCGGGGATGTCA +
Preference number: 4 (lower is better)
Translates to: RLISSQRILCHAGPLCSGCSSPG*RSAGMS
Trigger: TGACATCCCCGCTGACCGCCATCCAGGACTGCTGCA...CCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp GGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGGTAGCCCGGAACTTGTGTGCTaGGAAGACGGTGAAAATCCC +
Preference number: 4 (lower is better)
Translates to: GGVQVPLGNTGVRPAAGSPELVC*EDGENP
Trigger: GGGATTTTCACCGTCTTCCCAGCACACAAGTTCCGG...GCTACCAGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp GGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGACTGGGTGTCCGTGACTaGGGCCCCATGGTCCAGAAT +
Preference number: 4 (lower is better)
Translates to: GSFLRREFCVTQGHSAPGLGVRD*GPMVQN
Trigger: ATTCTGGACCATGGGGCCTCAGTCACGGACACCCAG...TCCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp GGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGGTAGCATGGTGCTGTACCCATaGTCACTTTCAGTTCCCGAG +
Preference number: 4 (lower is better)
Translates to: GGVQVPLGNTGVRPAAGSMVLYP*SLSVPE
Trigger: CTCGGGAACTGAAAGTGATCATGGGTACAGCACCAT...GCTACCAGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp CGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGCTCGCTGTCTTCCTGTaGGCTCATGGTGCTGTACCC +
Preference number: 4 (lower is better)
Translates to: RLISSQRILCHAGPLCSGLAVFL*AHGAVP
Trigger: GGGTACAGCACCATGAGCCCACAGGAAGACAGCGAG...CCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp GGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGGTAGCTGTATGATGTCAGTATaGAGGGGAGGCTCTGACAGT +
Preference number: 4 (lower is better)
Translates to: GGVQVPLGNTGVRPAAGSCMMSV*RGGSDS
Trigger: ACTGTCAGAGCCTCCCCTTCATACTGACATCATACA...GCTACCAGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp GTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTGCAGGTGGTGGCTGTaGTGGAGAGTCGGGTGGTGT +
Preference number: 4 (lower is better)
Translates to: VCRLISSQRILCHAGPLCCRWWL*WRVGWC
Trigger: ACACCACCCGACTCTCCATCACAGCCACCACCTGCA...GCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp CGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGCTGTTGACACACTGCTaGAGGGCATCTTGCAGGCCT +
Preference number: 4 (lower is better)
Translates to: RLISSQRILCHAGPLCSGLLTHC*RASCRP
Trigger: AGGCCTGCAAGATGCCCTGCAGCAGTGTGTCAACAG...CCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp GTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCAGCATCCACAGTGTaGACGGTCACTGCCGCCTGC +
Preference number: 4 (lower is better)
Translates to: VCRLISSQRILCHAGPLCSASTV*TVTAAC
Trigger: GCAGGCGGCAGTGACCGTGCACACTGTGGATGCTGA...GCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp GGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGAGCGTCCTTGGCAATCTaGAGCTGGGTGTCCGTGACT +
Preference number: 4 (lower is better)
Translates to: GSFLRREFCVTQGHSAPGASLAI*SWVSVT
Trigger: AGTCACGGACACCCAGCTCCAGATTGCCAAGGACGC...TCCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp GGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGGTAGCATGTCTGTGTTTGCTTaGAACCGAGTGCTGTTGCTG +
Preference number: 4 (lower is better)
Translates to: GGVQVPLGNTGVRPAAGSMSVFA*NRVLLL
Trigger: CAGCAACAGCACTCGGTTCCAAGCAAACACAGACAT...GCTACCAGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp CGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGGGGACAGTGATAATCTaGCTGCCGAGAGGGAGGCTT +
Preference number: 4 (lower is better)
Translates to: RLISSQRILCHAGPLCSGGTVII*LPRGRL
Trigger: AAGCCTCCCTCTCGGCAGCCAGATTATCACTGTCCC...CCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCG
58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp GGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGAGCCAGCTGCTTGAAGTaGAGGCAAGCACTGGGTTGG +
Preference number: 4 (lower is better)
Translates to: GSFLRREFCVTQGHSAPGASCLK*RQALGW
Trigger: CCAACCCAGTGCTTGCCTCCACTTCAAGCAGCTGGC...TCCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp AGTAATGGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTACCAGGGGCTCCTTGTaGGTAATGTGTTGCTGCTCC +
Preference number: 4 (lower is better)
Translates to: SNGGVQVPLGNTGVRPAATRGSL*VMCCCS
Trigger: GGAGCAGCAACACATTACCCACAAGGAGCCCCTGGT...AGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACCATTACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp GTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTGCCAGTACACTCATTaGCCTCCAGGGGGCACTCAC +
Preference number: 4 (lower is better)
Translates to: VCRLISSQRILCHAGPLCCQYTH*PPGGTH
Trigger: GTGAGTGCCCCCTGGAGGTCAATGAGTGTACTGGCA...GCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp GGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGGTAGCCCTAGTGGGATCAAATaGTTTGTCCATAAGGGAACC +
Preference number: 4 (lower is better)
Translates to: GGVQVPLGNTGVRPAAGSPSGIK*FVHKGT
Trigger: GGTTCCCTTATGGACAAAGCATTTGATCCCACTAGG...GCTACCAGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp CGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGTATGTGCTTGGACTGTaGCCGGACGGTAGAGACGTA +
Preference number: 4 (lower is better)
Translates to: RLISSQRILCHAGPLCSGYVLGL*PDGRDV
Trigger: TACGTCTCTACCGTCCGGCCACAGTCCAAGCACATA...CCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp CACGTGACAGGGCTGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGGCACTGAGGATGACCTaGGCGGCGTCCTTGGCAATC +
Preference number: 4 (lower is better)
Translates to: HVTGLYAGSFLRREFCVTALRMT*AASLAI
Trigger: GATTGCCAAGGACGCCGCCCAGGTCATCCTCAGTGC...CGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACAGCCCTGTCACGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp GTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTGCCGGCAGACAGCATaGCGGTTGGACTTTCTAGTG +
Preference number: 4 (lower is better)
Translates to: VCRLISSQRILCHAGPLCCRQTA*RLDFLV
Trigger: CACTAGAAAGTCCAACCGTCATGCTGTCTGCCGGCA...GCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp TGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGTTGAGCAGCAAGAGGTaGCATGTGCTGGTGGCTGCG +
Preference number: 4 (lower is better)
Translates to: CMPAHFFAENSVSRRATLLSSKR*HVLVAA
Trigger: CGCAGCCACCAGCACATGTCACCTCTTGCTGCTCAA...CAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp CACGTGACAGGGCTGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGGCCCAAGATCCAGCATaGCACAAGGCAGAGCAGCCA +
Preference number: 4 (lower is better)
Translates to: HVTGLYAGSFLRREFCVTAQDPA*HKAEQP
Trigger: TGGCTGCTCTGCCTTGTGGCATGCTGGATCTTGGGC...CGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACAGCCCTGTCACGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp GGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGAGAATTGAAGATCCTCTaGATGGTGACCACCCCCAGC +
Preference number: 4 (lower is better)
Translates to: GSFLRREFCVTQGHSAPGELKIL*MVTTPS
Trigger: GCTGGGGGTGGTCACCATGCAGAGGATCTTCAATTC...TCCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp GTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCATCACAGCCACGGTGTaGCCGGAAGACAGCTGTGTA +
Preference number: 4 (lower is better)
Translates to: VCRLISSQRILCHAGPLCITATV*PEDSCV
Trigger: TACACAGCTGTCTTCCGGGCACACCGTGGCTGTGAT...GCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp AGTAATGGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGGTCTCACTGGTGGCTaGAGACAGGTACGTCTTATA +
Preference number: 4 (lower is better)
Translates to: SNGGVQVPLGNTGVRPAAGLTGG*RQVRLI
Trigger: TATAAGACGTACCTGTCTCCAGCCACCAGTGAGACC...AGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACCATTACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp GGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGAAGAAGATCCAGTCGGTaGTACAGGAGCTTGCTGCTC +
Preference number: 4 (lower is better)
Translates to: GSFLRREFCVTQGHSAPGRRSSR*YRSLLL
Trigger: GAGCAGCAAGCTCCTGTACCACCGACTGGATCTTCT...TCCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp GTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCAGTGGAGGCAAGCACTaGGTTGGCCCAGAAGATCCA +
Preference number: 4 (lower is better)
Translates to: VCRLISSQRILCHAGPLCSGGKH*VGPEDP
Trigger: TGGATCTTCTGGGCCAACCCAGTGCTTGCCTCCACT...GCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp GGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGAAGCCGTGTATGTCACTaGCTCCTGGTGAACCTCACA +
Preference number: 4 (lower is better)
Translates to: GSFLRREFCVTQGHSAPGSRVCH*LLVNLT
Trigger: TGTGAGGTTCACCAGGAGCCAGTGACATACACGGCT...TCCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp GGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGGTAGCTGTCATTCTCCAGGTTaGACATACGCACTGACATTT +
Preference number: 4 (lower is better)
Translates to: GGVQVPLGNTGVRPAAGSCHSPG*TYALTF
Trigger: AAATGTCAGTGCGTATGTCCAACCTGGAGAATGACA...GCTACCAGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp GTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCGTGCTGGGAAGACGGTaGAAATCCCTTCTTCTGAGC +
Preference number: 4 (lower is better)
Translates to: VCRLISSQRILCHAGPLCVLGRR*KSLLLS
Trigger: GCTCAGAAGAAGGGATTTTCACCGTCTTCCCAGCAC...GCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp CGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGAGGAGTCCTTTGATGTaGTGCCTGCTGACAGGTAAA +
Preference number: 4 (lower is better)
Translates to: RLISSQRILCHAGPLCSGRSPLM*CLLTGK
Trigger: TTTACCTGTCAGCAGGCATCACATCAAAGGACTCCT...CCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp GGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGATCATCCATTCATCTGTaGCGTGGCTGGTCGCCATTA +
Preference number: 4 (lower is better)
Translates to: GSFLRREFCVTQGHSAPGSSIHL*RGWSPL
Trigger: TAATGGCGACCAGCCACGTCACAGATGAATGGATGA...TCCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp CGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGAACCAGGATAAATTCTaGGGACGCCATTGGGTGTTG +
Preference number: 4 (lower is better)
Translates to: RLISSQRILCHAGPLCSGNQDKF*GRHWVL
Trigger: CAACACCCAATGGCGTCCTCAGAATTTATCCTGGTT...CCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp GGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGACGCACTGACATTTCTTaGGCAGCAAGAGGTGACATG +
Preference number: 4 (lower is better)
Translates to: GSFLRREFCVTQGHSAPGRTDIS*AARGDM
Trigger: CATGTCACCTCTTGCTGCTCAAGAAATGTCAGTGCG...TCCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp CGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGACACCGGAACTTGTGTaGTGGGAAGACGGTGAAAAT +
Preference number: 4 (lower is better)
Translates to: RLISSQRILCHAGPLCSGTPELV*WEDGEN
Trigger: ATTTTCACCGTCTTCCCAGCACACAAGTTCCGGTGT...CCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp TGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGTGCGGTGCTCGTAGCTaGCCTTACACCGGAACTTGT +
Preference number: 4 (lower is better)
Translates to: CMPAHFFAENSVSRRATLCGARS*PYTGTC
Trigger: ACAAGTTCCGGTGTAAGGGCAGCTACGAGCACCGCA...CAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp TGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTGTGGTCTCCAGGTTaGTCAGCTGGTTCAGCACCA +
Preference number: 4 (lower is better)
Translates to: CMPAHFFAENSVSRRATLLWSPG*SAGSAP
Trigger: TGGTGCTGAACCAGCTGAGCAACCTGGAGACCACAG...CAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp TGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGGAGCAGTGGCTGCCGTaGACAAGGTTCGTCAAATCC +
Preference number: 4 (lower is better)
Translates to: CMPAHFFAENSVSRRATLEQWLP*TRFVKS
Trigger: GGATTTGACGAACCTTGTGCACGGCAGCCACTGCTC...CAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp GTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTGCCGACAAACGCGTTaGTTCCTGGGATCCTTGTCA +
Preference number: 4 (lower is better)
Translates to: VCRLISSQRILCHAGPLCCRQTR*FLGSLS
Trigger: TGACAAGGATCCCAGGAACCAACGCGTTTGTCGGCA...GCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp TGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTTGCTTGTTCCGATTaGCCACATCCAGGTAGCGGT +
Preference number: 4 (lower is better)
Translates to: CMPAHFFAENSVSRRATLLACSD*PHPGSG
Trigger: ACCGCTACCTGGATGTGGTCAATCGGAACAAGCAAG...CAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp CACGTGACAGGGCTGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGTACGTCCACCCCAGCTaGCAAAGGGTCATTGTTGCA +
Preference number: 4 (lower is better)
Translates to: HVTGLYAGSFLRREFCVTYVHPS*QRVIVA
Trigger: TGCAACAATGACCCTTTGTCAGCTGGGGTGGACGTA...CGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACAGCCCTGTCACGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp TGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGTGTAATGCTCCACCATaGGTTTGGTCTCTGGCTGGC +
Preference number: 4 (lower is better)
Translates to: CMPAHFFAENSVSRRATLCNAPP*VWSLAG
Trigger: GCCAGCCAGAGACCAAACGCATGGTGGAGCATTACA...CAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp CACGTGACAGGGCTGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGAGAGACGGTCCACCATaGTGCAAGCACAGAAGGCAA +
Preference number: 4 (lower is better)
Translates to: HVTGLYAGSFLRREFCVTRDGPP*CKHRRQ
Trigger: TTGCCTTCTGTGCTTGCAGCATGGTGGACCGTCTCT...CGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACAGCCCTGTCACGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp GTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTTTTGGTCTCACTGGTaGCTGGAGACAGGTACGTCT +
Preference number: 4 (lower is better)
Translates to: VCRLISSQRILCHAGPLCFWSHW*LETGTS
Trigger: AGACGTACCTGTCTCCAGCCACCAGTGAGACCAAAA...GCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp CGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGAAATCAGCCCTGGATTaGCTACTGCATGAAGATACC +
Preference number: 4 (lower is better)
Translates to: RLISSQRILCHAGPLCSGKSALD*LLHEDT
Trigger: GGTATCTTCATGCAGTAGCCAATCCAGGGCTGATTT...CCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp CGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGCCACTTTCCATCCTCTaGTTACATCTGCTGTTGACA +
Preference number: 4 (lower is better)
Translates to: RLISSQRILCHAGPLCSGPLSIL*LHLLLT
Trigger: TGTCAACAGCAGATGTAACCAGAGGATGGAAAGTGG...CCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp CGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGTTCGCTCTCTCCATTTaGGATCTTCTCTGTGTAAAC +
Preference number: 4 (lower is better)
Translates to: RLISSQRILCHAGPLCSGFALSI*DLLCVN
Trigger: GTTTACACAGAGAAGATCTCAAATGGAGAGAGCGAA...CCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp GTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCAGTGAATTGTGTGGCTaGTTGTCACGACATAGCCAG +
Preference number: 4 (lower is better)
Translates to: VCRLISSQRILCHAGPLCSELCG*LSRHSQ
Trigger: CTGGCTATGTCGTGACAATCAGCCACACAATTCACT...GCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp CACGTGACAGGGCTGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGTCTAGTGTTGCCAGCTaGTTGAAGTGGAGGCAAGCA +
Preference number: 4 (lower is better)
Translates to: HVTGLYAGSFLRREFCVTSSVAS*LKWRQA
Trigger: TGCTTGCCTCCACTTCAAGCAGCTGGCAACACTAGA...CGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACAGCCCTGTCACGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp CGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGTGTACGTGTTCAGGCTaGTCATTTCCATTTGTGTCA +
Preference number: 4 (lower is better)
Translates to: RLISSQRILCHAGPLCSGCTCSG*SFPFVS
Trigger: TGACACAAATGGAAATGAGCAGCCTGAACACGTACA...CCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp CACGTGACAGGGCTGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGGACGCCATTGGGTGTTaGTATGTAACGGCGGACAAT +
Preference number: 4 (lower is better)
Translates to: HVTGLYAGSFLRREFCVTDAIGC*YVTADN
Trigger: ATTGTCCGCCGTTACATAGCAACACCCAATGGCGTC...CGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACAGCCCTGTCACGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp GTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCCATCAAACTCCATCATaGAAGGCGGAATTGTGCAGC +
Preference number: 4 (lower is better)
Translates to: VCRLISSQRILCHAGPLCHQTPS*KAELCS
Trigger: GCTGCACAATTCCGCCTTCCATGATGGAGTTTGATG...GCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp AGTAATGGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTTTGTTGCCACCATCTTaGTTACAAACTGGTAAGAGG +
Preference number: 4 (lower is better)
Translates to: SNGGVQVPLGNTGVRPAALLPPS*LQTGKR
Trigger: CCTCTTACCAGTTTGTAACCAAGATGGTGGCAACAA...AGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACCATTACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp TGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGAGGGTCATTGTTGCATaGAGGGTTCTCGCTGTCTTC +
Preference number: 4 (lower is better)
Translates to: CMPAHFFAENSVSRRATLRVIVA*RVLAVF
Trigger: GAAGACAGCGAGAACCCTCCATGCAACAATGACCCT...CAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp GGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGACTCTGTCCTCCATTATaGAGCACCTTATTTTGTTGC +
Preference number: 4 (lower is better)
Translates to: GSFLRREFCVTQGHSAPGLCPPL*STLFCC
Trigger: GCAACAAAATAAGGTGCTTCATAATGGAGGACAGAG...TCCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp CACGTGACAGGGCTGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGTGTTCTCTGCATTGGTaGGGTTGCCAGTACACTCAT +
Preference number: 4 (lower is better)
Translates to: HVTGLYAGSFLRREFCVTCSLHW*GCQYTH
Trigger: ATGAGTGTACTGGCAACCTCACCAATGCAGAGAACA...CGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACAGCCCTGTCACGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp CACGTGACAGGGCTGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGGTTGGACATACGCACTaGCATTTCTTGAGCAGCAAG +
Preference number: 4 (lower is better)
Translates to: HVTGLYAGSFLRREFCVTVGHTH*HFLSSK
Trigger: CTTGCTGCTCAAGAAATGTCAGTGCGTATGTCCAAC...CGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACAGCCCTGTCACGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp CACGTGACAGGGCTGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGGTTCAGGATATCATTTaGTACCAGGGGCTCCTTGTG +
Preference number: 4 (lower is better)
Translates to: HVTGLYAGSFLRREFCVTVQDII*YQGLLV
Trigger: CACAAGGAGCCCCTGGTAGCAAATGATATCCTGAAC...CGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACAGCCCTGTCACGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp TGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGACAAAGGGTCATTGTTaGATGGAGGGTTCTCGCTGT +
Preference number: 4 (lower is better)
Translates to: CMPAHFFAENSVSRRATLTKGHC*MEGSRC
Trigger: ACAGCGAGAACCCTCCATGCAACAATGACCCTTTGT...CAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp GTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCACAGAAATCTTGTCATaGTCATCAATGGCACTGAGG +
Preference number: 4 (lower is better)
Translates to: VCRLISSQRILCHAGPLCTEILS*SSMALR
Trigger: CCTCAGTGCCATTGATGAGCATGACAAGATTTCTGT...GCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp AGTAATGGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTAGGCTTAGGATATTTTaGCGAACCAATTCAAACTTG +
Preference number: 4 (lower is better)
Translates to: SNGGVQVPLGNTGVRPAARLRIF*RTNSNL
Trigger: CAAGTTTGAATTGGTTCGGCAAAATATCCTAAGCCT...AGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACCATTACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp GTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCGCAACTCACTGTTCTTaGTACATTGGTGTTGAAGTT +
Preference number: 4 (lower is better)
Translates to: VCRLISSQRILCHAGPLCATHCS*YIGVEV
Trigger: AACTTCAACACCAATGTATCAAGAACAGTGAGTTGC...GCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp CCAACTATATATAAATGGAGATTTACACACACACGGTGCAAAGAACGCCTTCATTGGCTCGCCAGCACTTaGGCCTCGTCCAGGATGGAG +
Preference number: 4 (lower is better)
Translates to: PTIYKWRFTHTRCKERLHWLAST*ASSRME
Trigger: CTCCATCCTGGACGAGGCGCAAGTGCTGGCGAGCCA...ATGAAGGCGTTCTTTGCACCGTGTGTGTGTAAATCTCCATTTATATATAGTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp TGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCATTCACATTCATTTTaGTCCATTCGGTGGCAGTTG +
Preference number: 4 (lower is better)
Translates to: CMPAHFFAENSVSRRATLHSHSF*SIRWQL
Trigger: CAACTGCCACCGAATGGAGCAAAATGAATGTGAATG...CAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAAGCCAGCCTCCGCATCTaGCTCGCCAGCACTTGCGCC +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQASLRI*LASTCA
Trigger: GGCGCAAGTGCTGGCGAGCCAGATGCGGAGGCTGGC...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp GGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGATTCACAAAGTTGGGATaGTTCAGGATATCATTTGCT +
Preference number: 4 (lower is better)
Translates to: GSFLRREFCVTQGHSAPGFTKLG*FRISFA
Trigger: AGCAAATGATATCCTGAACCATCCCAACTTTGTGAA...TCCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp TGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGTTGATACATTGGTGTTaGAGTTCCCATCAAACTCCA +
Preference number: 4 (lower is better)
Translates to: CMPAHFFAENSVSRRATLLIHWC*SSHQTP
Trigger: TGGAGTTTGATGGGAACTTCAACACCAATGTATCAA...CAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTTGGTCTCTGGCTGGCTaGGGTGCTCATAGGGGGAGG +
Preference number: 4 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCWSLAG*GAHRGR
Trigger: CCTCCCCCTATGAGCACCTCAGCCAGCCAGAGACCA...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTTGGCTCGCCAGCACTTaGGCCTCGTCCAGGATGGAG +
Preference number: 4 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCWLAST*ASSRME
Trigger: CTCCATCCTGGACGAGGCGCAAGTGCTGGCGAGCCA...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAAGCGCCTCGTCCAGGATaGAGAAGTCGGCGTCGGCCA +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQAPRPG*RSRRRP
Trigger: TGGCCGACGCCGACTTCTCCATCCTGGACGAGGCGC...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp TGCCTCCCTAAACTGGAAGGCTACGGTTATAATAGTAGATTTCGTAGAAACCTAAGGCAAGCACTGGGTTaGCCCAGAAGATCCAGTCGG +
Preference number: 4 (lower is better)
Translates to: CLPKLEGYGYNSRFRRNLRQALG*PRRSSR
Trigger: CCGACTGGATCTTCTGGGCCAACCCAGTGCTTGCCT...TAGGTTTCTACGAAATCTACTATTATAACCGTAGCCTTCCAGTTTAGGGAGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp CCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCAATGTAGTCTCGTCCTGGGTTaGAGGCTCGGCTGTTCACGG +
Preference number: 4 (lower is better)
Translates to: PIIHRVYFLKAFLQWCQCSLVLG*RLGCSR
Trigger: CCGTGAACAGCCGAGCCTTCAACCCAGGACGAGACT...ACATTGACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp CCAACTATATATAAATGGAGATTTACACACACACGGTGCAAAGAACGCCTTCATTTGGCAATCTGGAGCTaGGTGTCCGTGACTGAGGCC +
Preference number: 4 (lower is better)
Translates to: PTIYKWRFTHTRCKERLHLAIWS*VSVTEA
Trigger: GGCCTCAGTCACGGACACCCAGCTCCAGATTGCCAA...ATGAAGGCGTTCTTTGCACCGTGTGTGTGTAAATCTCCATTTATATATAGTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp CCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCAATGTGCACTGAGGATGACCTaGGCGGCGTCCTTGGCAATC +
Preference number: 4 (lower is better)
Translates to: PIIHRVYFLKAFLQWCQCALRMT*AASLAI
Trigger: GATTGCCAAGGACGCCGCCCAGGTCATCCTCAGTGC...ACATTGACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp TGCCTCCCTAAACTGGAAGGCTACGGTTATAATAGTAGATTTCGTAGAAACCTACGGTACTTAGAGCAGTaGCTGCCGTGCACAAGGTTC +
Preference number: 4 (lower is better)
Translates to: CLPKLEGYGYNSRFRRNLRYLEQ*LPCTRF
Trigger: GAACCTTGTGCACGGCAGCCACTGCTCTAAGTACCG...TAGGTTTCTACGAAATCTACTATTATAACCGTAGCCTTCCAGTTTAGGGAGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp TGCCTCCCTAAACTGGAAGGCTACGGTTATAATAGTAGATTTCGTAGAAACCTAGGCATCTTGCAGGCCTaGGTCGATAGCCGTGTATGT +
Preference number: 4 (lower is better)
Translates to: CLPKLEGYGYNSRFRRNLGILQA*VDSRVC
Trigger: ACATACACGGCTATCGACCCAGGCCTGCAAGATGCC...TAGGTTTCTACGAAATCTACTATTATAACCGTAGCCTTCCAGTTTAGGGAGGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAACTGGGTGTCCGTGACTaGGGCCCCATGGTCCAGAAT +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQLGVRD*GPMVQN
Trigger: ATTCTGGACCATGGGGCCTCAGTCACGGACACCCAG...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR TCA 90 bp TGCCTCCCTAAACTGGAAGGCTACGGTTATAATAGTAGATTTCGTAGAAACCTACAGAGAAGGGGAGGCTaGAGACAGCCTCATCAATCA +
Preference number: 4 (lower is better)
Translates to: CLPKLEGYGYNSRFRRNLQRRGG*RQPHQS
Trigger: TGATTGATGAGGCTGTCTTCAGCCTCCCCTTCTCTG...TAGGTTTCTACGAAATCTACTATTATAACCGTAGCCTTCCAGTTTAGGGAGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp TGCCTCCCTAAACTGGAAGGCTACGGTTATAATAGTAGATTTCGTAGAAACCTAGGTTACATCTGCTGTTaGCACACTGCTGCAGGGCAT +
Preference number: 4 (lower is better)
Translates to: CLPKLEGYGYNSRFRRNLGYICC*HTAAGH
Trigger: ATGCCCTGCAGCAGTGTGTCAACAGCAGATGTAACC...TAGGTTTCTACGAAATCTACTATTATAACCGTAGCCTTCCAGTTTAGGGAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp TCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTTGAGCAGCAAGAGGTaGCATGTGCTGGTGGCTGCG +
Preference number: 4 (lower is better)
Translates to: STSHHSSCIFSEGFSSMVLSSKR*HVLVAA
Trigger: CGCAGCCACCAGCACATGTCACCTCTTGCTGCTCAA...CACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp TCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGGCCCAAGATCCAGCATaGCACAAGGCAGAGCAGCCA +
Preference number: 4 (lower is better)
Translates to: STSHHSSCIFSEGFSSMVAQDPA*HKAEQP
Trigger: TGGCTGCTCTGCCTTGTGGCATGCTGGATCTTGGGC...CACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp CCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCAATGTTTGGCAATCTGGAGCTaGGTGTCCGTGACTGAGGCC +
Preference number: 4 (lower is better)
Translates to: PIIHRVYFLKAFLQWCQCLAIWS*VSVTEA
Trigger: GGCCTCAGTCACGGACACCCAGCTCCAGATTGCCAA...ACATTGACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp TCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGAGGCAAGCACTGGGTTaGCCCAGAAGATCCAGTCGG +
Preference number: 4 (lower is better)
Translates to: STSHHSSCIFSEGFSSMVRQALG*PRRSSR
Trigger: CCGACTGGATCTTCTGGGCCAACCCAGTGCTTGCCT...CACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp TGCCTCCCTAAACTGGAAGGCTACGGTTATAATAGTAGATTTCGTAGAAACCTAAAACGCGTTGGTTCCTaGGATCCTTGTCAGGCGGTA +
Preference number: 4 (lower is better)
Translates to: CLPKLEGYGYNSRFRRNLKRVGS*DPCQAV
Trigger: TACCGCCTGACAAGGATCCCAGGAACCAACGCGTTT...TAGGTTTCTACGAAATCTACTATTATAACCGTAGCCTTCCAGTTTAGGGAGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp TGCCTCCCTAAACTGGAAGGCTACGGTTATAATAGTAGATTTCGTAGAAACCTACTTCCTGTGGGCTCATaGTGCTGTACCCATGATCAC +
Preference number: 4 (lower is better)
Translates to: CLPKLEGYGYNSRFRRNLLPVGS*CCTHDH
Trigger: GTGATCATGGGTACAGCACCATGAGCCCACAGGAAG...TAGGTTTCTACGAAATCTACTATTATAACCGTAGCCTTCCAGTTTAGGGAGGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp AATCCTTTACTTAGAAATTTTGAGATGCATCGTTTAGAGCCTAAGGTGAGCTCTGAGAGTCGGGTGGTGTaGGCGGTAGTGGTGGAACTT +
Preference number: 4 (lower is better)
Translates to: NPLLRNFEMHRLEPKVSSESRVV*AVVVEL
Trigger: AAGTTCCACCACTACCGCCCACACCACCCGACTCTC...AGAGCTCACCTTAGGCTCTAAACGATGCATCTCAAAATTTCTAAGTAAAGGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp CATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCATGCCGGCAGACAGCATaGCGGTTGGACTTTCTAGTG +
Preference number: 4 (lower is better)
Translates to: HCSTSHHSSCIFSEGFSSCRQTA*RLDFLV
Trigger: CACTAGAAAGTCCAACCGTCATGCTGTCTGCCGGCA...TGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR TCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGCCAGTACACTCATTaGCCTCCAGGGGGCACTCAC +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQCQYTH*PPGGTH
Trigger: GTGAGTGCCCCCTGGAGGTCAATGAGTGTACTGGCA...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp CATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCATGCGGTGCTCGTAGCTaGCCTTACACCGGAACTTGT +
Preference number: 4 (lower is better)
Translates to: HCSTSHHSSCIFSEGFSSCGARS*PYTGTC
Trigger: ACAAGTTCCGGTGTAAGGGCAGCTACGAGCACCGCA...TGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp TCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGCTGTGGTCTCCAGGTTaGTCAGCTGGTTCAGCACCA +
Preference number: 4 (lower is better)
Translates to: STSHHSSCIFSEGFSSMVLWSPG*SAGSAP
Trigger: TGGTGCTGAACCAGCTGAGCAACCTGGAGACCACAG...CACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp TCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGATCACAGCCACGGTGTaGCCGGAAGACAGCTGTGTA +
Preference number: 4 (lower is better)
Translates to: STSHHSSCIFSEGFSSMVITATV*PEDSCV
Trigger: TACACAGCTGTCTTCCGGGCACACCGTGGCTGTGAT...CACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp AATCCTTTACTTAGAAATTTTGAGATGCATCGTTTAGAGCCTAAGGTGAGCTCTGACGGTCCACCATGCTaGAAGCACAGAAGGCAAGAG +
Preference number: 4 (lower is better)
Translates to: NPLLRNFEMHRLEPKVSSDGPPC*KHRRQE
Trigger: CTCTTGCCTTCTGTGCTTGCAGCATGGTGGACCGTC...AGAGCTCACCTTAGGCTCTAAACGATGCATCTCAAAATTTCTAAGTAAAGGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp CCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCAATGTCTGTTGACACACTGCTaGAGGGCATCTTGCAGGCCT +
Preference number: 4 (lower is better)
Translates to: PIIHRVYFLKAFLQWCQCLLTHC*RASCRP
Trigger: AGGCCTGCAAGATGCCCTGCAGCAGTGTGTCAACAG...ACATTGACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAAGCGTCCTTGGCAATCTaGAGCTGGGTGTCCGTGACT +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQASLAI*SWVSVT
Trigger: AGTCACGGACACCCAGCTCCAGATTGCCAAGGACGC...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp AATCCTTTACTTAGAAATTTTGAGATGCATCGTTTAGAGCCTAAGGTGAGCTCTAGAACCTGCCGACTGTaGTCTCCAGGTTGCTCAGCT +
Preference number: 4 (lower is better)
Translates to: NPLLRNFEMHRLEPKVSSRTCRL*SPGCSA
Trigger: AGCTGAGCAACCTGGAGACCACAGTCGGCAGGTTCT...AGAGCTCACCTTAGGCTCTAAACGATGCATCTCAAAATTTCTAAGTAAAGGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp TCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGAGAACCTGCCGACTGTaGTCTCCAGGTTGCTCAGCT +
Preference number: 4 (lower is better)
Translates to: STSHHSSCIFSEGFSSMVRTCRL*SPGCSA
Trigger: AGCTGAGCAACCTGGAGACCACAGTCGGCAGGTTCT...CACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTGGGACAGTGATAATCTaGCTGCCGAGAGGGAGGCTT +
Preference number: 4 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCGTVII*LPRGRL
Trigger: AAGCCTCCCTCTCGGCAGCCAGATTATCACTGTCCC...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp CAAATGTTCTCTATATTCATGTTCATGTGTTTAGAGCTTGGTAGACAAGTACACGCCAGCTGCTTGAAGTaGAGGCAAGCACTGGGTTGG +
Preference number: 4 (lower is better)
Translates to: QMFSIFMFMCLELGRQVHASCLK*RQALGW
Trigger: CCAACCCAGTGCTTGCCTCCACTTCAAGCAGCTGGC...GTGTACTTGTCTACCAAGCTCTAAACACATGAACATGAATATAGAGAACATTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp TCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGACCAGGGGCTCCTTGTaGGTAATGTGTTGCTGCTCC +
Preference number: 4 (lower is better)
Translates to: STSHHSSCIFSEGFSSMVTRGSL*VMCCCS
Trigger: GGAGCAGCAACACATTACCCACAAGGAGCCCCTGGT...CACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp CATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCACGGTACTTAGAGCAGTaGCTGCCGTGCACAAGGTTC +
Preference number: 4 (lower is better)
Translates to: HCSTSHHSSCIFSEGFSSRYLEQ*LPCTRF
Trigger: GAACCTTGTGCACGGCAGCCACTGCTCTAAGTACCG...TGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR TCA 90 bp TCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGGTGCTGGGAAGACGGTaGAAATCCCTTCTTCTGAGC +
Preference number: 4 (lower is better)
Translates to: STSHHSSCIFSEGFSSMVVLGRR*KSLLLS
Trigger: GCTCAGAAGAAGGGATTTTCACCGTCTTCCCAGCAC...CACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR TCA 90 bp CCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCAATGTCAGAGAAGGGGAGGCTaGAGACAGCCTCATCAATCA +
Preference number: 4 (lower is better)
Translates to: PIIHRVYFLKAFLQWCQCQRRGG*RQPHQS
Trigger: TGATTGATGAGGCTGTCTTCAGCCTCCCCTTCTCTG...ACATTGACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp CCAACTATATATAAATGGAGATTTACACACACACGGTGCAAAGAACGCCTTCATGGTCCTGACAGCGTCTaGCACAGTCAACACAGAAAT +
Preference number: 4 (lower is better)
Translates to: PTIYKWRFTHTRCKERLHGPDSV*HSQHRN
Trigger: ATTTCTGTGTTGACTGTGGCAGACGCTGTCAGGACC...ATGAAGGCGTTCTTTGCACCGTGTGTGTGTAAATCTCCATTTATATATAGTTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp TGCCTCCCTAAACTGGAAGGCTACGGTTATAATAGTAGATTTCGTAGAAACCTACTCAACTTGTTGATGTaGCAAGACAGGGACGAGTTC +
Preference number: 4 (lower is better)
Translates to: CLPKLEGYGYNSRFRRNLLNLLM*QDRDEF
Trigger: GAACTCGTCCCTGTCTTGGCACATCAACAAGTTGAG...TAGGTTTCTACGAAATCTACTATTATAACCGTAGCCTTCCAGTTTAGGGAGGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTTGTAATGCTCCACCATaGGTTTGGTCTCTGGCTGGC +
Preference number: 4 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCCNAPP*VWSLAG
Trigger: GCCAGCCAGAGACCAAACGCATGGTGGAGCATTACA...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAAGAGCAGTGGCTGCCGTaGACAAGGTTCGTCAAATCC +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQEQWLP*TRFVKS
Trigger: GGATTTGACGAACCTTGTGCACGGCAGCCACTGCTC...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp CAAATGTTCTCTATATTCATGTTCATGTGTTTAGAGCTTGGTAGACAAGTACACGACGGTCCACCATGCTaGAAGCACAGAAGGCAAGAG +
Preference number: 4 (lower is better)
Translates to: QMFSIFMFMCLELGRQVHDGPPC*KHRRQE
Trigger: CTCTTGCCTTCTGTGCTTGCAGCATGGTGGACCGTC...GTGTACTTGTCTACCAAGCTCTAAACACATGAACATGAATATAGAGAACATTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp CCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCAATGTAGAGACGGTCCACCATaGTGCAAGCACAGAAGGCAA +
Preference number: 4 (lower is better)
Translates to: PIIHRVYFLKAFLQWCQCRDGPP*CKHRRQ
Trigger: TTGCCTTCTGTGCTTGCAGCATGGTGGACCGTCTCT...ACATTGACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp CAAATGTTCTCTATATTCATGTTCATGTGTTTAGAGCTTGGTAGACAAGTACACCTGCTGTTGACACACTaGTGCAGGGCATCTTGCAGG +
Preference number: 4 (lower is better)
Translates to: QMFSIFMFMCLELGRQVHLLLTH*CRASCR
Trigger: CCTGCAAGATGCCCTGCAGCAGTGTGTCAACAGCAG...GTGTACTTGTCTACCAAGCTCTAAACACATGAACATGAATATAGAGAACATTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCCGGAACTTGTGTGCTaGGAAGACGGTGAAAATCCC +
Preference number: 4 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCPELVC*EDGENP
Trigger: GGGATTTTCACCGTCTTCCCAGCACACAAGTTCCGG...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp AATCCTTTACTTAGAAATTTTGAGATGCATCGTTTAGAGCCTAAGGTGAGCTCTTCCAGGTTGCTCAGCTaGTTCAGCACCATCATGCTG +
Preference number: 4 (lower is better)
Translates to: NPLLRNFEMHRLEPKVSSSRLLS*FSTIML
Trigger: CAGCATGATGGTGCTGAACCAGCTGAGCAACCTGGA...AGAGCTCACCTTAGGCTCTAAACGATGCATCTCAAAATTTCTAAGTAAAGGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp CAAATGTTCTCTATATTCATGTTCATGTGTTTAGAGCTTGGTAGACAAGTACACAGTGGAGGCAAGCACTaGGTTGGCCCAGAAGATCCA +
Preference number: 4 (lower is better)
Translates to: QMFSIFMFMCLELGRQVHSGGKH*VGPEDP
Trigger: TGGATCTTCTGGGCCAACCCAGTGCTTGCCTCCACT...GTGTACTTGTCTACCAAGCTCTAAACACATGAACATGAATATAGAGAACATTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp AATCCTTTACTTAGAAATTTTGAGATGCATCGTTTAGAGCCTAAGGTGAGCTCTCATGCGTTTGGTCTCTaGCTGGCTGAGGTGCTCATA +
Preference number: 4 (lower is better)
Translates to: NPLLRNFEMHRLEPKVSSHAFGL*LAEVLI
Trigger: TATGAGCACCTCAGCCAGCCAGAGACCAAACGCATG...AGAGCTCACCTTAGGCTCTAAACGATGCATCTCAAAATTTCTAAGTAAAGGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTAAACGCGTTGGTTCCTaGGATCCTTGTCAGGCGGTA +
Preference number: 4 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCKRVGS*DPCQAV
Trigger: TACCGCCTGACAAGGATCCCAGGAACCAACGCGTTT...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp CATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCATGCCGACAAACGCGTTaGTTCCTGGGATCCTTGTCA +
Preference number: 4 (lower is better)
Translates to: HCSTSHHSSCIFSEGFSSCRQTR*FLGSLS
Trigger: TGACAAGGATCCCAGGAACCAACGCGTTTGTCGGCA...TGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAAGGCATCTTGCAGGCCTaGGTCGATAGCCGTGTATGT +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQGILQA*VDSRVC
Trigger: ACATACACGGCTATCGACCCAGGCCTGCAAGATGCC...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR TCA 90 bp TGCCTCCCTAAACTGGAAGGCTACGGTTATAATAGTAGATTTCGTAGAAACCTATGTGTACTGGATGAGTaGATTGTGTGGCTGATTGTC +
Preference number: 4 (lower is better)
Translates to: CLPKLEGYGYNSRFRRNLCVLDE*IVWLIV
Trigger: GACAATCAGCCACACAATTCACTCATCCAGTACACA...TAGGTTTCTACGAAATCTACTATTATAACCGTAGCCTTCCAGTTTAGGGAGGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAAGGTTACATCTGCTGTTaGCACACTGCTGCAGGGCAT +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQGYICC*HTAAGH
Trigger: ATGCCCTGCAGCAGTGTGTCAACAGCAGATGTAACC...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR TCA 90 bp CCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCAATGTCGCACTGACATTTCTTaGGCAGCAAGAGGTGACATG +
Preference number: 4 (lower is better)
Translates to: PIIHRVYFLKAFLQWCQCRTDIS*AARGDM
Trigger: CATGTCACCTCTTGCTGCTCAAGAAATGTCAGTGCG...ACATTGACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp CCAACTATATATAAATGGAGATTTACACACACACGGTGCAAAGAACGCCTTCATGAGGCTTCTACCACTTaGTTGTTCCGATTGACCACA +
Preference number: 4 (lower is better)
Translates to: PTIYKWRFTHTRCKERLHEASTT*LFRLTT
Trigger: TGTGGTCAATCGGAACAAGCAAGTGGTAGAAGCCTC...ATGAAGGCGTTCTTTGCACCGTGTGTGTGTAAATCTCCATTTATATATAGTTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp TCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGGGTCCTGACAGCGTCTaGCACAGTCAACACAGAAAT +
Preference number: 4 (lower is better)
Translates to: STSHHSSCIFSEGFSSMVGPDSV*HSQHRN
Trigger: ATTTCTGTGTTGACTGTGGCAGACGCTGTCAGGACC...CACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp CATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCATCTAGTGTTGCCAGCTaGTTGAAGTGGAGGCAAGCA +
Preference number: 4 (lower is better)
Translates to: HCSTSHHSSCIFSEGFSSSSVAS*LKWRQA
Trigger: TGCTTGCCTCCACTTCAAGCAGCTGGCAACACTAGA...TGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTGACGCCATTGGGTGTTaGTATGTAACGGCGGACAAT +
Preference number: 4 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCDAIGC*YVTADN
Trigger: ATTGTCCGCCGTTACATAGCAACACCCAATGGCGTC...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATATGTGCTTGGACTGTaGCCGGACGGTAGAGACGTA +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQYVLGL*PDGRDV
Trigger: TACGTCTCTACCGTCCGGCCACAGTCCAAGCACATA...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTGGTCTCACTGGTGGCTaGAGACAGGTACGTCTTATA +
Preference number: 4 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCGLTGG*RQVRLI
Trigger: TATAAGACGTACCTGTCTCCAGCCACCAGTGAGACC...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATCCAGGTTGCTCAGCTaGTTCAGCACCATCATGCTG +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQSRLLS*FSTIML
Trigger: CAGCATGATGGTGCTGAACCAGCTGAGCAACCTGGA...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAAAGAAGATCCAGTCGGTaGTACAGGAGCTTGCTGCTC +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQRRSSR*YRSLLL
Trigger: GAGCAGCAAGCTCCTGTACCACCGACTGGATCTTCT...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAACATGCGTTTGGTCTCTaGCTGGCTGAGGTGCTCATA +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQHAFGL*LAEVLI
Trigger: TATGAGCACCTCAGCCAGCCAGAGACCAAACGCATG...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp CCAACTATATATAAATGGAGATTTACACACACACGGTGCAAAGAACGCCTTCATCATTCATCTGTGACGTaGCTGGTCGCCATTACTTCA +
Preference number: 4 (lower is better)
Translates to: PTIYKWRFTHTRCKERLHHSSVT*LVAITS
Trigger: TGAAGTAATGGCGACCAGCCACGTCACAGATGAATG...ATGAAGGCGTTCTTTGCACCGTGTGTGTGTAAATCTCCATTTATATATAGTTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp CAAATGTTCTCTATATTCATGTTCATGTGTTTAGAGCTTGGTAGACAAGTACACAGCCGTGTATGTCACTaGCTCCTGGTGAACCTCACA +
Preference number: 4 (lower is better)
Translates to: QMFSIFMFMCLELGRQVHSRVCH*LLVNLT
Trigger: TGTGAGGTTCACCAGGAGCCAGTGACATACACGGCT...GTGTACTTGTCTACCAAGCTCTAAACACATGAACATGAATATAGAGAACATTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR TCA 90 bp CCAACTATATATAAATGGAGATTTACACACACACGGTGCAAAGAACGCCTTCATTTTTTGGCTAGCTGCTaGACTTCGCTCTCTCCATTT +
Preference number: 4 (lower is better)
Translates to: PTIYKWRFTHTRCKERLHFLASC*TSLSPF
Trigger: AAATGGAGAGAGCGAAGTTCAGCAGCTAGCCAAAAA...ATGAAGGCGTTCTTTGCACCGTGTGTGTGTAAATCTCCATTTATATATAGTTGG
41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTAGGAGTCCTTTGATGTaGTGCCTGCTGACAGGTAAA +
Preference number: 4 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCRSPLM*CLLTGK
Trigger: TTTACCTGTCAGCAGGCATCACATCAAAGGACTCCT...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR TCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATCATCCATTCATCTGTaGCGTGGCTGGTCGCCATTA +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQSSIHL*RGWSPL
Trigger: TAATGGCGACCAGCCACGTCACAGATGAATGGATGA...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR TCA 90 bp CATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAAGTGAATTGTGTGGCTaGTTGTCACGACATAGCCAG +
Preference number: 4 (lower is better)
Translates to: HCSTSHHSSCIFSEGFSSSELCG*LSRHSQ
Trigger: CTGGCTATGTCGTGACAATCAGCCACACAATTCACT...TGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR TCA 90 bp CCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCAATGTTGTTCTCTGCATTGGTaGGGTTGCCAGTACACTCAT +
Preference number: 4 (lower is better)
Translates to: PIIHRVYFLKAFLQWCQCCSLHW*GCQYTH
Trigger: ATGAGTGTACTGGCAACCTCACCAATGCAGAGAACA...ACATTGACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR TCA 90 bp CATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAGTTGGACATACGCACTaGCATTTCTTGAGCAGCAAG +
Preference number: 4 (lower is better)
Translates to: HCSTSHHSSCIFSEGFSSVGHTH*HFLSSK
Trigger: CTTGCTGCTCAAGAAATGTCAGTGCGTATGTCCAAC...TGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTGAGGCTTCTACCACTTaGTTGTTCCGATTGACCACA +
Preference number: 4 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCEASTT*LFRLTT
Trigger: TGTGGTCAATCGGAACAAGCAAGTGGTAGAAGCCTC...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp CATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAACACCGGAACTTGTGTaGTGGGAAGACGGTGAAAAT +
Preference number: 4 (lower is better)
Translates to: HCSTSHHSSCIFSEGFSSTPELV*WEDGEN
Trigger: ATTTTCACCGTCTTCCCAGCACACAAGTTCCGGTGT...TGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCTCAACTTGTTGATGTaGCAAGACAGGGACGAGTTC +
Preference number: 4 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCLNLLM*QDRDEF
Trigger: GAACTCGTCCCTGTCTTGGCACATCAACAAGTTGAG...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATTTTGGTCTCACTGGTaGCTGGAGACAGGTACGTCT +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQFWSHW*LETGTS
Trigger: AGACGTACCTGTCTCCAGCCACCAGTGAGACCAAAA...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTATGTCTGTGTTTGCTTaGAACCGAGTGCTGTTGCTG +
Preference number: 4 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCMSVFA*NRVLLL
Trigger: CAGCAACAGCACTCGGTTCCAAGCAAACACAGACAT...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp AATCCTTTACTTAGAAATTTTGAGATGCATCGTTTAGAGCCTAAGGTGAGCTCTTCACCTCATCACCGATaGCTCCCATGTCATCAACAT +
Preference number: 4 (lower is better)
Translates to: NPLLRNFEMHRLEPKVSSSPHHR*LPCHQH
Trigger: ATGTTGATGACATGGGAGCCATCGGTGATGAGGTGA...AGAGCTCACCTTAGGCTCTAAACGATGCATCTCAAAATTTCTAAGTAAAGGATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTTTTTTGGCTAGCTGCTaGACTTCGCTCTCTCCATTT +
Preference number: 4 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCFLASC*TSLSPF
Trigger: AAATGGAGAGAGCGAAGTTCAGCAGCTAGCCAAAAA...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
40% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR TCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGTATGATGTCAGTATaGAGGGGAGGCTCTGACAGT +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQCMMSV*RGGSDS
Trigger: ACTGTCAGAGCCTCCCCTTCATACTGACATCATACA...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR TCA 90 bp AATCCTTTACTTAGAAATTTTGAGATGCATCGTTTAGAGCCTAAGGTGAGCTCTCCACAATACACAGAATaGAGGAAGTGTCCTGTACCA +
Preference number: 4 (lower is better)
Translates to: NPLLRNFEMHRLEPKVSSPQYTE*RKCPVP
Trigger: TGGTACAGGACACTTCCTTCATTCTGTGTATTGTGG...AGAGCTCACCTTAGGCTCTAAACGATGCATCTCAAAATTTCTAAGTAAAGGATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp TCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGCCACAATACACAGAATaGAGGAAGTGTCCTGTACCA +
Preference number: 4 (lower is better)
Translates to: STSHHSSCIFSEGFSSMVPQYTE*RKCPVP
Trigger: TGGTACAGGACACTTCCTTCATTCTGTGTATTGTGG...CACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR TCA 90 bp CAAATGTTCTCTATATTCATGTTCATGTGTTTAGAGCTTGGTAGACAAGTACACAACCAGGATAAATTCTaGGGACGCCATTGGGTGTTG +
Preference number: 4 (lower is better)
Translates to: QMFSIFMFMCLELGRQVHNQDKF*GRHWVL
Trigger: CAACACCCAATGGCGTCCTCAGAATTTATCCTGGTT...GTGTACTTGTCTACCAAGCTCTAAACACATGAACATGAATATAGAGAACATTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp CATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCACCTAGTGGGATCAAATaGTTTGTCCATAAGGGAACC +
Preference number: 4 (lower is better)
Translates to: HCSTSHHSSCIFSEGFSSPSGIK*FVHKGT
Trigger: GGTTCCCTTATGGACAAAGCATTTGATCCCACTAGG...TGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAAGTTCAGGATATCATTTaGTACCAGGGGCTCCTTGTG +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQVQDII*YQGLLV
Trigger: CACAAGGAGCCCCTGGTAGCAAATGATATCCTGAAC...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAACATCAAACTCCATCATaGAAGGCGGAATTGTGCAGC +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQHQTPS*KAELCS
Trigger: GCTGCACAATTCCGCCTTCCATGATGGAGTTTGATG...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp CAAATGTTCTCTATATTCATGTTCATGTGTTTAGAGCTTGGTAGACAAGTACACCATTCATCTGTGACGTaGCTGGTCGCCATTACTTCA +
Preference number: 4 (lower is better)
Translates to: QMFSIFMFMCLELGRQVHHSSVT*LVAITS
Trigger: TGAAGTAATGGCGACCAGCCACGTCACAGATGAATG...GTGTACTTGTCTACCAAGCTCTAAACACATGAACATGAATATAGAGAACATTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp TCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGAAATCAGCCCTGGATTaGCTACTGCATGAAGATACC +
Preference number: 4 (lower is better)
Translates to: STSHHSSCIFSEGFSSMVKSALD*LLHEDT
Trigger: GGTATCTTCATGCAGTAGCCAATCCAGGGCTGATTT...CACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp CAAATGTTCTCTATATTCATGTTCATGTGTTTAGAGCTTGGTAGACAAGTACACTCACCTCATCACCGATaGCTCCCATGTCATCAACAT +
Preference number: 4 (lower is better)
Translates to: QMFSIFMFMCLELGRQVHSPHHR*LPCHQH
Trigger: ATGTTGATGACATGGGAGCCATCGGTGATGAGGTGA...GTGTACTTGTCTACCAAGCTCTAAACACATGAACATGAATATAGAGAACATTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
3UTR CAA 72 bp CTTTCCTTTCCTTTCCTTGTTTGTTTGTTTGTTTGTTaGTGTGTTTTGTGGATGAGGACAGTGGGCAGATCA +
Preference number: 4 (lower is better)
Translates to: LSFPFLVCLFVC*CVLWMRTVGRS
Trigger: TGATCTGCCCACTGTCCTCATCCACAAAACACACAAACAAACAAACAAACAAACAAGGAAAGGAAAGGAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTTTCGCTCTCTCCATTTaGGATCTTCTCTGTGTAAAC +
Preference number: 4 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCFALSI*DLLCVN
Trigger: GTTTACACAGAGAAGATCTCAAATGGAGAGAGCGAA...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR TCA 90 bp CAAATGTTCTCTATATTCATGTTCATGTGTTTAGAGCTTGGTAGACAAGTACACTGTGTACTGGATGAGTaGATTGTGTGGCTGATTGTC +
Preference number: 4 (lower is better)
Translates to: QMFSIFMFMCLELGRQVHCVLDE*IVWLIV
Trigger: GACAATCAGCCACACAATTCACTCATCCAGTACACA...GTGTACTTGTCTACCAAGCTCTAAACACATGAACATGAATATAGAGAACATTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTACAGAAATCTTGTCATaGTCATCAATGGCACTGAGG +
Preference number: 4 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCTEILS*SSMALR
Trigger: CCTCAGTGCCATTGATGAGCATGACAAGATTTCTGT...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp TCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTGTACGTGTTCAGGCTaGTCATTTCCATTTGTGTCA +
Preference number: 4 (lower is better)
Translates to: STSHHSSCIFSEGFSSMVCTCSG*SFPFVS
Trigger: TGACACAAATGGAAATGAGCAGCCTGAACACGTACA...CACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp TCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGCATTCACATTCATTTTaGTCCATTCGGTGGCAGTTG +
Preference number: 4 (lower is better)
Translates to: STSHHSSCIFSEGFSSMVHSHSF*SIRWQL
Trigger: CAACTGCCACCGAATGGAGCAAAATGAATGTGAATG...CACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAACCACTTTCCATCCTCTaGTTACATCTGCTGTTGACA +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQPLSIL*LHLLLT
Trigger: TGTCAACAGCAGATGTAACCAGAGGATGGAAAGTGG...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp CCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCAATGTTGTCATTCTCCAGGTTaGACATACGCACTGACATTT +
Preference number: 4 (lower is better)
Translates to: PIIHRVYFLKAFLQWCQCCHSPG*TYALTF
Trigger: AAATGTCAGTGCGTATGTCCAACCTGGAGAATGACA...ACATTGACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR TCA 90 bp CATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCATTGATACATTGGTGTTaGAGTTCCCATCAAACTCCA +
Preference number: 4 (lower is better)
Translates to: HCSTSHHSSCIFSEGFSSLIHWC*SSHQTP
Trigger: TGGAGTTTGATGGGAACTTCAACACCAATGTATCAA...TGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR TCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAACTCTGTCCTCCATTATaGAGCACCTTATTTTGTTGC +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQLCPPL*STLFCC
Trigger: GCAACAAAATAAGGTGCTTCATAATGGAGGACAGAG...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp AATCCTTTACTTAGAAATTTTGAGATGCATCGTTTAGAGCCTAAGGTGAGCTCTTCTGAGCTGAAATATTaGCACTTGATTCCAGGGTTA +
Preference number: 4 (lower is better)
Translates to: NPLLRNFEMHRLEPKVSSSELKY*HLIPGL
Trigger: TAACCCTGGAATCAAGTGGCAATATTTCAGCTCAGA...AGAGCTCACCTTAGGCTCTAAACGATGCATCTCAAAATTTCTAAGTAAAGGATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATTGTTGCCACCATCTTaGTTACAAACTGGTAAGAGG +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQLLPPS*LQTGKR
Trigger: CCTCTTACCAGTTTGTAACCAAGATGGTGGCAACAA...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR TCA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAAGCAACTCACTGTTCTTaGTACATTGGTGTTGAAGTT +
Preference number: 4 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQATHCS*YIGVEV
Trigger: AACTTCAACACCAATGTATCAAGAACAGTGAGTTGC...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR TCA 90 bp AATCCTTTACTTAGAAATTTTGAGATGCATCGTTTAGAGCCTAAGGTGAGCTCTTGTTTTCATAATGTATaGTGTCAGTATGAAGGGGAG +
Preference number: 4 (lower is better)
Translates to: NPLLRNFEMHRLEPKVSSCFHNV*CQYEGE
Trigger: CTCCCCTTCATACTGACATCATACATTATGAAAACA...AGAGCTCACCTTAGGCTCTAAACGATGCATCTCAAAATTTCTAAGTAAAGGATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR TCA 90 bp TCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTGTTTTCATAATGTATaGTGTCAGTATGAAGGGGAG +
Preference number: 4 (lower is better)
Translates to: STSHHSSCIFSEGFSSMVCFHNV*CQYEGE
Trigger: CTCCCCTTCATACTGACATCATACATTATGAAAACA...CACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp CAAATGTTCTCTATATTCATGTTCATGTGTTTAGAGCTTGGTAGACAAGTACACTCTGAGCTGAAATATTaGCACTTGATTCCAGGGTTA +
Preference number: 4 (lower is better)
Translates to: QMFSIFMFMCLELGRQVHSELKY*HLIPGL
Trigger: TAACCCTGGAATCAAGTGGCAATATTTCAGCTCAGA...GTGTACTTGTCTACCAAGCTCTAAACACATGAACATGAATATAGAGAACATTTG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTAGGCTTAGGATATTTTaGCGAACCAATTCAAACTTG +
Preference number: 4 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCRLRIF*RTNSNL
Trigger: CAAGTTTGAATTGGTTCGGCAAAATATCCTAAGCCT...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR GCA 90 bp AATCCTTTACTTAGAAATTTTGAGATGCATCGTTTAGAGCCTAAGGTGAGCTCTAGCACCTTATTTTGTTaGCACCATCTTGGTTACAAA +
Preference number: 4 (lower is better)
Translates to: NPLLRNFEMHRLEPKVSSSTLFC*HHLGYK
Trigger: TTTGTAACCAAGATGGTGGCAACAAAATAAGGTGCT...AGAGCTCACCTTAGGCTCTAAACGATGCATCTCAAAATTTCTAAGTAAAGGATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR GCA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTAGCACCTTATTTTGTTaGCACCATCTTGGTTACAAA +
Preference number: 4 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCSTLFC*HHLGYK
Trigger: TTTGTAACCAAGATGGTGGCAACAAAATAAGGTGCT...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CCA 90 bp CATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCATTCACAAAGTTGGGATaGTTCAGGATATCATTTGCT +
Preference number: 4 (lower is better)
Translates to: HCSTSHHSSCIFSEGFSSFTKLG*FRISFA
Trigger: AGCAAATGATATCCTGAACCATCCCAACTTTGTGAA...TGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS GCA 90 bp CCCAGCTCCTCGGCAGCCAGCCTCCGCATCTGGCTCGCCAGCACTTaGGCCTCGTCCAGGATGGAGAAGTCGGCGTCGGCCACGGCGCCC +
Preference number: 5 (lower is better)
Translates to: PSSSAASLRIWLAST*ASSRMEKSASATAP
Trigger: GGGCGCCGTGGCCGACGCCGACTTCTCCATCCTGGACGAGGCGCAAGTGCTGGCGAGCCAGATGCGGAGGCTGGCTGCCGAGGAGCTGGG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 90 bp CCAGCCTCCGCATCTGGCTCGCCAGCACTTGCGCCTCGTCCAGGATaGAGAAGTCGGCGTCGGCCACGGCGCCCAAGATCCAGCATGCCA +
Preference number: 5 (lower is better)
Translates to: PASASGSPALAPRPG*RSRRRPRRPRSSMP
Trigger: TGGCATGCTGGATCTTGGGCGCCGTGGCCGACGCCGACTTCTCCATCCTGGACGAGGCGCAAGTGCTGGCGAGCCAGATGCGGAGGCTGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 90 bp TGCATGGTGACCACCCCCAGCTCCTCGGCAGCCAGCCTCCGCATCTaGCTCGCCAGCACTTGCGCCTCGTCCAGGATGGAGAAGTCGGCG +
Preference number: 5 (lower is better)
Translates to: CMVTTPSSSAASLRI*LASTCASSRMEKSA
Trigger: CGCCGACTTCTCCATCCTGGACGAGGCGCAAGTGCTGGCGAGCCAGATGCGGAGGCTGGCTGCCGAGGAGCTGGGGGTGGTCACCATGCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS TCA 90 bp GACCTGGGCGGCGTCCTTGGCAATCTGGAGCTGGGTGTCCGTGACTaGGGCCCCATGGTCCAGAATCACGACTATGTGCTTGGACTGTGG +
Preference number: 5 (lower is better)
Translates to: DLGGVLGNLELGVRD*GPMVQNHDYVLGLW
Trigger: CCACAGTCCAAGCACATAGTCGTGATTCTGGACCATGGGGCCTCAGTCACGGACACCCAGCTCCAGATTGCCAAGGACGCCGCCCAGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS TCA 90 bp AACCGAGTGCTGTTGCTGGTGCTTCGAATCAGCTGGAACGCCCTGTaGAAGCCTACTGCGTGCTGGGTGGGGCTGTCGGAGGGCTTGACG +
Preference number: 5 (lower is better)
Translates to: NRVLLLVLRISWNAL*KPTACWVGLSEGLT
Trigger: CGTCAAGCCCTCCGACAGCCCCACCCAGCACGCAGTAGGCTTTCACAGGGCGTTCCAGCTGATTCGAAGCACCAGCAACAGCACTCGGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp GGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGGTAGCTTGCCAGTACACTCATaGACCTCCAGGGGGCACTCA +
Preference number: 5 (lower is better)
Translates to: GGVQVPLGNTGVRPAAGSLPVHS*TSRGHS
Trigger: TGAGTGCCCCCTGGAGGTCAATGAGTGTACTGGCAA...GCTACCAGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS CCA 90 bp ATGGCACTGAGGATGACCTGGGCGGCGTCCTTGGCAATCTGGAGCTaGGTGTCCGTGACTGAGGCCCCATGGTCCAGAATCACGACTATG +
Preference number: 5 (lower is better)
Translates to: MALRMTWAASLAIWS*VSVTEAPWSRITTM
Trigger: CATAGTCGTGATTCTGGACCATGGGGCCTCAGTCACGGACACCCAGCTCCAGATTGCCAAGGACGCCGCCCAGGTCATCCTCAGTGCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 90 bp TCATCAATGGCACTGAGGATGACCTGGGCGGCGTCCTTGGCAATCTaGAGCTGGGTGTCCGTGACTGAGGCCCCATGGTCCAGAATCACG +
Preference number: 5 (lower is better)
Translates to: SSMALRMTWAASLAI*SWVSVTEAPWSRIT
Trigger: CGTGATTCTGGACCATGGGGCCTCAGTCACGGACACCCAGCTCCAGATTGCCAAGGACGCCGCCCAGGTCATCCTCAGTGCCATTGATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp GGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGGTAGCGTCTCCCTCAACTTGTaGATGTGCCAAGACAGGGAC +
Preference number: 5 (lower is better)
Translates to: GGVQVPLGNTGVRPAAGSVSLNL*MCQDRD
Trigger: GTCCCTGTCTTGGCACATCAACAAGTTGAGGGAGAC...GCTACCAGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp AGTAATGGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTTGCTCCACCATGCGTTaGGTCTCTGGCTGGCTGAGG +
Preference number: 5 (lower is better)
Translates to: SNGGVQVPLGNTGVRPAACSTMR*VSGWLR
Trigger: CCTCAGCCAGCCAGAGACCAAACGCATGGTGGAGCA...AGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACCATTACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS GCA 90 bp GTTGCTGGTGCTTCGAATCAGCTGGAACGCCCTGTGAAAGCCTACTaGGTGCTGGGTGGGGCTGTCGGAGGGCTTGACGCTGCTAACAAA +
Preference number: 5 (lower is better)
Translates to: VAGASNQLERPVKAY*VLGGAVGGLDAANK
Trigger: TTTGTTAGCAGCGTCAAGCCCTCCGACAGCCCCACCCAGCACGCAGTAGGCTTTCACAGGGCGTTCCAGCTGATTCGAAGCACCAGCAAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 90 bp AGAGTCGCAGGTCTCGTTGACGATGCCGACAAACGCGTTGGTTCCTaGGATCCTTGTCAGGCGGTACTTAGAGCAGTGGCTGCCGTGCAC +
Preference number: 5 (lower is better)
Translates to: RVAGLVDDADKRVGS*DPCQAVLRAVAAVH
Trigger: GTGCACGGCAGCCACTGCTCTAAGTACCGCCTGACAAGGATCCCAGGAACCAACGCGTTTGTCGGCATCGTCAACGAGACCTGCGACTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGAAGTCTCGTCCTGGGTaGAAGGCTCGGCTGTTCACG +
Preference number: 5 (lower is better)
Translates to: RLISSQRILCHAGPLCSGKSRPG*KARLFT
Trigger: CGTGAACAGCCGAGCCTTCAACCCAGGACGAGACTT...CCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp GGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGGTAGCTCTGCATTGGTGAGGTaGCCAGTACACTCATTGACC +
Preference number: 5 (lower is better)
Translates to: GGVQVPLGNTGVRPAAGSSALVR*PVHSLT
Trigger: GGTCAATGAGTGTACTGGCAACCTCACCAATGCAGA...GCTACCAGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS TCA 90 bp CCACCATGCTGCAAGCACAGAAGGCAAGAGAGTCGCAGGTCTCGTTaGCGATGCCGACAAACGCGTTGGTTCCTGGGATCCTTGTCAGGC +
Preference number: 5 (lower is better)
Translates to: PPCCKHRRQESRRSR*RCRQTRWFLGSLSG
Trigger: GCCTGACAAGGATCCCAGGAACCAACGCGTTTGTCGGCATCGTCAACGAGACCTGCGACTCTCTTGCCTTCTGTGCTTGCAGCATGGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS GCA 90 bp TGCTACCAGGGGCTCCTTGTGGGTAATGTGTTGCTGCTCCAGAGGTaGATGACCCTTGGGGTCAACGAGGGTCGGATGAGCCACCAGATA +
Preference number: 5 (lower is better)
Translates to: CYQGLLVGNVLLLQR*MTLGVNEGRMSHQI
Trigger: TATCTGGTGGCTCATCCGACCCTCGTTGACCCCAAGGGTCATGCACCTCTGGAGCAGCAACACATTACCCACAAGGAGCCCCTGGTAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 90 bp GTCACTGAGATAGGCCGTGTAATGCTCCACCATGCGTTTGGTCTCTaGCTGGCTGAGGTGCTCATAGGGGGAGGAAAAGCTGCCGGCAGA +
Preference number: 5 (lower is better)
Translates to: VTEIGRVMLHHAFGL*LAEVLIGGGKAAGR
Trigger: TCTGCCGGCAGCTTTTCCTCCCCCTATGAGCACCTCAGCCAGCCAGAGACCAAACGCATGGTGGAGCATTACACGGCCTATCTCAGTGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 90 bp AACGCGTTGGTTCCTGGGATCCTTGTCAGGCGGTACTTAGAGCAGTaGCTGCCGTGCACAAGGTTCGTCAAATCCCCCACCAGGCTAGTG +
Preference number: 5 (lower is better)
Translates to: NALVPGILVRRYLEQ*LPCTRFVKSPTRLV
Trigger: CACTAGCCTGGTGGGGGATTTGACGAACCTTGTGCACGGCAGCCACTGCTCTAAGTACCGCCTGACAAGGATCCCAGGAACCAACGCGTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 90 bp ATCACTTTCAGTTCCCGAGCGGCCCCAGTAGCGTCGCCTCCTTTCTaGACTGTGTACGTGTCGCTCCATGACTGCAGCTATGAACCGGGT +
Preference number: 5 (lower is better)
Translates to: ITFSSRAAPVASPPF*TVYVSLHDCSYEPG
Trigger: ACCCGGTTCATAGCTGCAGTCATGGAGCGACACGTACACAGTCCAGAAAGGAGGCGACGCTACTGGGGCCGCTCGGGAACTGAAAGTGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp GGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGACCCTTACACCGGAACTaGTGTGCTGGGAAGACGGTG +
Preference number: 5 (lower is better)
Translates to: GSFLRREFCVTQGHSAPGPLHRN*CAGKTV
Trigger: CACCGTCTTCCCAGCACACAAGTTCCGGTGTAAGGG...TCCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS CCA 90 bp CTTTCTAGTGTTGCCAGCTGCTTGAAGTGGAGGCAAGCACTGGGTTaGCCCAGAAGATCCAGTCGGTGGTACAGGAGCTTGCTGCTCGGT +
Preference number: 5 (lower is better)
Translates to: LSSVASCLKWRQALG*PRRSSRWYRSLLLG
Trigger: ACCGAGCAGCAAGCTCCTGTACCACCGACTGGATCTTCTGGGCCAACCCAGTGCTTGCCTCCACTTCAAGCAGCTGGCAACACTAGAAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 90 bp CTGCAGGGCATCTTGCAGGCCTGGGTCGATAGCCGTGTATGTCACTaGCTCCTGGTGAACCTCACAGCTCGGGTTTCTGTTCTCTGCATT +
Preference number: 5 (lower is better)
Translates to: LQGILQAWVDSRVCH*LLVNLTARVSVLCI
Trigger: AATGCAGAGAACAGAAACCCGAGCTGTGAGGTTCACCAGGAGCCAGTGACATACACGGCTATCGACCCAGGCCTGCAAGATGCCCTGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp TGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGGAGGCAAGCACTGGGTaGGCCCAGAAGATCCAGTCG +
Preference number: 5 (lower is better)
Translates to: CMPAHFFAENSVSRRATLEASTG*AQKIQS
Trigger: CGACTGGATCTTCTGGGCCAACCCAGTGCTTGCCTC...CAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp AGTAATGGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGCTATGAACCGGGTGTaGCTGATGATGCCTCTGTCT +
Preference number: 5 (lower is better)
Translates to: SNGGVQVPLGNTGVRPAAAMNRV*LMMPLS
Trigger: AGACAGAGGCATCATCAGCAACACCCGGTTCATAGC...AGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACCATTACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp AGTAATGGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGCTGACAAAGGGTCATaGTTGCATGGAGGGTTCTCG +
Preference number: 5 (lower is better)
Translates to: SNGGVQVPLGNTGVRPAAADKGS*LHGGFS
Trigger: CGAGAACCCTCCATGCAACAATGACCCTTTGTCAGC...AGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACCATTACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS TCA 90 bp TCTTGCAGGCCTGGGTCGATAGCCGTGTATGTCACTGGCTCCTGGTaGACCTCACAGCTCGGGTTTCTGTTCTCTGCATTGGTGAGGTTG +
Preference number: 5 (lower is better)
Translates to: SCRPGSIAVYVTGSW*TSQLGFLFSALVRL
Trigger: CAACCTCACCAATGCAGAGAACAGAAACCCGAGCTGTGAGGTTCACCAGGAGCCAGTGACATACACGGCTATCGACCCAGGCCTGCAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS TCA 90 bp GTCCAGGTCCAAGTCGTCATCATGGTTCCCTACGTCCACCCCAGCTaGCAAAGGGTCATTGTTGCATGGAGGGTTCTCGCTGTCTTCCTG +
Preference number: 5 (lower is better)
Translates to: VQVQVVIMVPYVHPS*QRVIVAWRVLAVFL
Trigger: CAGGAAGACAGCGAGAACCCTCCATGCAACAATGACCCTTTGTCAGCTGGGGTGGACGTAGGGAACCATGATGACGACTTGGACCTGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS GCA 90 bp CAGTCCCCACTTTCCATCCTCTGGTTACATCTGCTGTTGACACACTaGTGCAGGGCATCTTGCAGGCCTGGGTCGATAGCCGTGTATGTC +
Preference number: 5 (lower is better)
Translates to: QSPLSILWLHLLLTH*CRASCRPGSIAVYV
Trigger: GACATACACGGCTATCGACCCAGGCCTGCAAGATGCCCTGCAGCAGTGTGTCAACAGCAGATGTAACCAGAGGATGGAAAGTGGGGACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 90 bp CATCAAACTCCATCATGGAAGGCGGAATTGTGCAGCAGTCCTGGATaGCGGTCAGCGGGGATGTCAGGTGGGCTGTATAGGAGGCTTCTA +
Preference number: 5 (lower is better)
Translates to: HQTPSWKAELCSSPG*RSAGMSGGLYRRLL
Trigger: TAGAAGCCTCCTATACAGCCCACCTGACATCCCCGCTGACCGCCATCCAGGACTGCTGCACAATTCCGCCTTCCATGATGGAGTTTGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 90 bp GACAGCATGACGGTTGGACTTTCTAGTGTTGCCAGCTGCTTGAAGTaGAGGCAAGCACTGGGTTGGCCCAGAAGATCCAGTCGGTGGTAC +
Preference number: 5 (lower is better)
Translates to: DSMTVGLSSVASCLK*RQALGWPRRSSRWY
Trigger: GTACCACCGACTGGATCTTCTGGGCCAACCCAGTGCTTGCCTCCACTTCAAGCAGCTGGCAACACTAGAAAGTCCAACCGTCATGCTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 90 bp GTTACATCTGCTGTTGACACACTGCTGCAGGGCATCTTGCAGGCCTaGGTCGATAGCCGTGTATGTCACTGGCTCCTGGTGAACCTCACA +
Preference number: 5 (lower is better)
Translates to: VTSAVDTLLQGILQA*VDSRVCHWLLVNLT
Trigger: TGTGAGGTTCACCAGGAGCCAGTGACATACACGGCTATCGACCCAGGCCTGCAAGATGCCCTGCAGCAGTGTGTCAACAGCAGATGTAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp AGTAATGGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGCTTCTACCACTTGCTaGTTCCGATTGACCACATCC +
Preference number: 5 (lower is better)
Translates to: SNGGVQVPLGNTGVRPAAASTTC*FRLTTS
Trigger: GGATGTGGTCAATCGGAACAAGCAAGTGGTAGAAGC...AGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACCATTACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp GGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGGTAGCCTTGATACATTGGTGTaGAAGTTCCCATCAAACTCC +
Preference number: 5 (lower is better)
Translates to: GGVQVPLGNTGVRPAAGSLDTLV*KFPSNS
Trigger: GGAGTTTGATGGGAACTTCAACACCAATGTATCAAG...GCTACCAGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp AGTAATGGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGTGGACATTTTCCTTTaGGTCTCACTGGTGGCTGGA +
Preference number: 5 (lower is better)
Translates to: SNGGVQVPLGNTGVRPAAVDIFL*VSLVAG
Trigger: TCCAGCCACCAGTGAGACCAAAAGGAAAATGTCCAC...AGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACCATTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp CACGTGACAGGGCTGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCGGTGGTACAGGAGCTaGCTGCTCGGTACAGTGTTG +
Preference number: 5 (lower is better)
Translates to: HVTGLYAGSFLRREFCVTRWYRS*LLGTVL
Trigger: CAACACTGTACCGAGCAGCAAGCTCCTGTACCACCG...CGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACAGCCCTGTCACGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp GTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCGGACGCCATTGGGTGTaGCTATGTAACGGCGGACAA +
Preference number: 5 (lower is better)
Translates to: VCRLISSQRILCHAGPLCGRHWV*LCNGGQ
Trigger: TTGTCCGCCGTTACATAGCAACACCCAATGGCGTCC...GCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp CGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGGGTTCAGGATATCATTaGCTACCAGGGGCTCCTTGT +
Preference number: 5 (lower is better)
Translates to: RLISSQRILCHAGPLCSGGSGYH*LPGAPC
Trigger: ACAAGGAGCCCCTGGTAGCAAATGATATCCTGAACC...CCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp CACGTGACAGGGCTGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGTCCATTCGGTGGCAGTaGAGACAGAGACGGTCCACC +
Preference number: 5 (lower is better)
Translates to: HVTGLYAGSFLRREFCVTSIRWQ*RQRRST
Trigger: GGTGGACCGTCTCTGTCTCAACTGCCACCGAATGGA...CGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACAGCCCTGTCACGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS GCA 90 bp GTTCCTGGGATCCTTGTCAGGCGGTACTTAGAGCAGTGGCTGCCGTaGACAAGGTTCGTCAAATCCCCCACCAGGCTAGTGTTGAATTTG +
Preference number: 5 (lower is better)
Translates to: VPGILVRRYLEQWLP*TRFVKSPTRLVLNL
Trigger: CAAATTCAACACTAGCCTGGTGGGGGATTTGACGAACCTTGTGCACGGCAGCCACTGCTCTAAGTACCGCCTGACAAGGATCCCAGGAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS GCA 90 bp GTAGCGTCGCCTCCTTTCTGGACTGTGTACGTGTCGCTCCATGACTaGAGCTATGAACCGGGTGTTGCTGATGATGCCTCTGTCTTCATG +
Preference number: 5 (lower is better)
Translates to: VASPPFWTVYVSLHD*SYEPGVADDASVFM
Trigger: CATGAAGACAGAGGCATCATCAGCAACACCCGGTTCATAGCTGCAGTCATGGAGCGACACGTACACAGTCCAGAAAGGAGGCGACGCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 90 bp AACACAGAAATCTTGTCATGCTCATCAATGGCACTGAGGATGACCTaGGCGGCGTCCTTGGCAATCTGGAGCTGGGTGTCCGTGACTGAG +
Preference number: 5 (lower is better)
Translates to: NTEILSCSSMALRMT*AASLAIWSWVSVTE
Trigger: CTCAGTCACGGACACCCAGCTCCAGATTGCCAAGGACGCCGCCCAGGTCATCCTCAGTGCCATTGATGAGCATGACAAGATTTCTGTGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 90 bp CAGCACCATCATGCTGCCTTTGATCACAGGCAAGGCTGTCCGGTCTaGGATTCCATACTTCCCAGAGTTCTGTTCAGCCAGATCCCTGAG +
Preference number: 5 (lower is better)
Translates to: QHHHAAFDHRQGCPV*DSILPRVLFSQIPE
Trigger: CTCAGGGATCTGGCTGAACAGAACTCTGGGAAGTATGGAATCCCAGACCGGACAGCCTTGCCTGTGATCAAAGGCAGCATGATGGTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 90 bp CATTCGCAGTCCAGCACACCGAAACAGTCCCCACTTTCCATCCTCTaGTTACATCTGCTGTTGACACACTGCTGCAGGGCATCTTGCAGG +
Preference number: 5 (lower is better)
Translates to: HSQSSTPKQSPLSIL*LHLLLTHCCRASCR
Trigger: CCTGCAAGATGCCCTGCAGCAGTGTGTCAACAGCAGATGTAACCAGAGGATGGAAAGTGGGGACTGTTTCGGTGTGCTGGACTGCGAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp AGTAATGGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTGTGGGATCAAATGCTTaGTCCATAAGGGAACCAGGA +
Preference number: 5 (lower is better)
Translates to: SNGGVQVPLGNTGVRPAAVGSNA*SIREPG
Trigger: TCCTGGTTCCCTTATGGACAAAGCATTTGATCCCAC...AGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACCATTACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp CGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGCTGTCATTCTCCAGGTaGGACATACGCACTGACATT +
Preference number: 5 (lower is better)
Translates to: RLISSQRILCHAGPLCSGLSFSR*DIRTDI
Trigger: AATGTCAGTGCGTATGTCCAACCTGGAGAATGACAG...CCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS TCA 90 bp TGTGCCCGGAAGACAGCTGTGTACTGGATGAGTGAATTGTGTGGCTaGTTGTCACGACATAGCCAGCTCCTCCAACATCCAGGTAAGGGC +
Preference number: 5 (lower is better)
Translates to: CARKTAVYWMSELCG*LSRHSQLLQHPGKG
Trigger: GCCCTTACCTGGATGTTGGAGGAGCTGGCTATGTCGTGACAATCAGCCACACAATTCACTCATCCAGTACACAGCTGTCTTCCGGGCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp GTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCCATGTCTGTGTTTGCTaGGAACCGAGTGCTGTTGCT +
Preference number: 5 (lower is better)
Translates to: VCRLISSQRILCHAGPLCHVCVC*EPSAVA
Trigger: AGCAACAGCACTCGGTTCCAAGCAAACACAGACATG...GCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp GGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGAGACGGGTATTTCCGGTaGTATCACCACAATACACAG +
Preference number: 5 (lower is better)
Translates to: GSFLRREFCVTQGHSAPGDGYFR*YHHNTQ
Trigger: CTGTGTATTGTGGTGATACAACCGGAAATACCCGTC...TCCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS CCA 90 bp TTGAAGTGGAGGCAAGCACTGGGTTGGCCCAGAAGATCCAGTCGGTaGTACAGGAGCTTGCTGCTCGGTACAGTGTTGAGGTTTTTCAAT +
Preference number: 5 (lower is better)
Translates to: LKWRQALGWPRRSSR*YRSLLLGTVLRFFN
Trigger: ATTGAAAAACCTCAACACTGTACCGAGCAGCAAGCTCCTGTACCACCGACTGGATCTTCTGGGCCAACCCAGTGCTTGCCTCCACTTCAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp AGTAATGGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTCTTCGCTCTCTCCATTaGAGATCTTCTCTGTGTAAA +
Preference number: 5 (lower is better)
Translates to: SNGGVQVPLGNTGVRPAALRSLH*RSSLCK
Trigger: TTTACACAGAGAAGATCTCAAATGGAGAGAGCGAAG...AGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACCATTACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS TCA 90 bp AAACTGGTAAGAGGTCCATCAGAACCTTGTAGAAGTACCTCAGTGTaGAGTCGATACCCATCACAGCCACGGTGTGCCCGGAAGACAGCT +
Preference number: 5 (lower is better)
Translates to: KLVRGPSEPCRSTSV*SRYPSQPRCARKTA
Trigger: AGCTGTCTTCCGGGCACACCGTGGCTGTGATGGGTATCGACTTCACACTGAGGTACTTCTACAAGGTTCTGATGGACCTCTTACCAGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp AGTAATGGTGGTGTCCAGGTACCGCTAGGAAACACGGGAGTCCGTCCAGCGGCTACTGTTCTTGATACATaGGTGTTGAAGTTCCCATCA +
Preference number: 5 (lower is better)
Translates to: SNGGVQVPLGNTGVRPAATVLDT*VLKFPS
Trigger: TGATGGGAACTTCAACACCAATGTATCAAGAACAGT...AGCCGCTGGACGGACTCCCGTGTTTCCTAGCGGTACCTGGACACCACCATTACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS TCA 90 bp CTGGAGACAGGTACGTCTTATAGCACTGGTCCAACGAACAGGTCCTaGCAGCGTCTGCCACAGTCAACACAGAAATCTTGTCATGCTCAT +
Preference number: 5 (lower is better)
Translates to: LETGTSYSTGPTNRS*QRLPQSTQKSCHAH
Trigger: ATGAGCATGACAAGATTTCTGTGTTGACTGTGGCAGACGCTGTCAGGACCTGTTCGTTGGACCAGTGCTATAAGACGTACCTGTCTCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS GCA 90 bp ATCCAGGTAAGGGCCCGTCAAGGAAATCAGCCCTGGATTGGCTACTaGATGAAGATACCACTGTCTCCTAGTGGGATCAAATGCTTTGTC +
Preference number: 5 (lower is better)
Translates to: IQVRARQGNQPWIGY*MKIPLSPSGIKCFV
Trigger: GACAAAGCATTTGATCCCACTAGGAGACAGTGGTATCTTCATGCAGTAGCCAATCCAGGGCTGATTTCCTTGACGGGCCCTTACCTGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp GGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGACTGAAATATTGCCACTaGATTCCAGGGTTAGATTTC +
Preference number: 5 (lower is better)
Translates to: GSFLRREFCVTQGHSAPGLKYCH*IPGLDF
Trigger: GAAATCTAACCCTGGAATCAAGTGGCAATATTTCAG...TCCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp GTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCGTCAACACAGAAATCTaGTCATGCTCATCAATGGCA +
Preference number: 5 (lower is better)
Translates to: VCRLISSQRILCHAGPLCVNTEI*SCSSMA
Trigger: TGCCATTGATGAGCATGACAAGATTTCTGTGTTGAC...GCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp GGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGCTCCGGGAAAGCACCTTATTTTGTaGCCACCATCTTGGTTACAA +
Preference number: 5 (lower is better)
Translates to: GSFLRREFCVTQGHSAPGKHLIL*PPSWLQ
Trigger: TTGTAACCAAGATGGTGGCAACAAAATAAGGTGCTT...TCCCGGAGCAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp TGCCTCCCTAAACTGGAAGGCTACGGTTATAATAGTAGATTTCGTAGAAACCTACTGCTGCAGGGCATCTaGCAGGCCTGGGTCGATAGC +
Preference number: 5 (lower is better)
Translates to: CLPKLEGYGYNSRFRRNLLLQGI*QAWVDS
Trigger: GCTATCGACCCAGGCCTGCAAGATGCCCTGCAGCAG...TAGGTTTCTACGAAATCTACTATTATAACCGTAGCCTTCCAGTTTAGGGAGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS GCA 90 bp GTCCATAAGGGAACCAGGATAAATTCTGAGGACGCCATTGGGTGTTaGTATGTAACGGCGGACAATGTACGTGTTCAGGCTGCTCATTTC +
Preference number: 5 (lower is better)
Translates to: VHKGTRINSEDAIGC*YVTADNVRVQAAHF
Trigger: GAAATGAGCAGCCTGAACACGTACATTGTCCGCCGTTACATAGCAACACCCAATGGCGTCCTCAGAATTTATCCTGGTTCCCTTATGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 90 bp GCTGCTAACAAATGTGGACATTTTCCTTTTGGTCTCACTGGTGGCTaGAGACAGGTACGTCTTATAGCACTGGTCCAACGAACAGGTCCT +
Preference number: 5 (lower is better)
Translates to: AANKCGHFPFGLTGG*RQVRLIALVQRTGP
Trigger: AGGACCTGTTCGTTGGACCAGTGCTATAAGACGTACCTGTCTCCAGCCACCAGTGAGACCAAAAGGAAAATGTCCACATTTGTTAGCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp AATCCTTTACTTAGAAATTTTGAGATGCATCGTTTAGAGCCTAAGGTGAGCTCTCTGGCTCGCCAGCACTaGCGCCTCGTCCAGGATGGA +
Preference number: 5 (lower is better)
Translates to: NPLLRNFEMHRLEPKVSSLARQH*RLVQDG
Trigger: TCCATCCTGGACGAGGCGCAAGTGCTGGCGAGCCAG...AGAGCTCACCTTAGGCTCTAAACGATGCATCTCAAAATTTCTAAGTAAAGGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp CATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCACTGGCTCGCCAGCACTaGCGCCTCGTCCAGGATGGA +
Preference number: 5 (lower is better)
Translates to: HCSTSHHSSCIFSEGFSSLARQH*RLVQDG
Trigger: TCCATCCTGGACGAGGCGCAAGTGCTGGCGAGCCAG...TGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CACGTGACAGGGCTGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGGTTGAGGTTTTTCAATaGTTTGACGGGTATTTCCGG +
Preference number: 5 (lower is better)
Translates to: HVTGLYAGSFLRREFCVTVEVFQ*FDGYFR
Trigger: CCGGAAATACCCGTCAAACAATTGAAAAACCTCAAC...CGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACAGCCCTGTCACGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp TGCCTCCCTAAACTGGAAGGCTACGGTTATAATAGTAGATTTCGTAGAAACCTAGAGTCGCAGGTCTCGTaGACGATGCCGACAAACGCG +
Preference number: 5 (lower is better)
Translates to: CLPKLEGYGYNSRFRRNLESQVS*TMPTNA
Trigger: CGCGTTTGTCGGCATCGTCAACGAGACCTGCGACTC...TAGGTTTCTACGAAATCTACTATTATAACCGTAGCCTTCCAGTTTAGGGAGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp TGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGACATTCACATTCATTTaGCTCCATTCGGTGGCAGTT +
Preference number: 5 (lower is better)
Translates to: CMPAHFFAENSVSRRATLTFTFI*LHSVAV
Trigger: AACTGCCACCGAATGGAGCAAAATGAATGTGAATGT...CAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS GCA 90 bp ACACAAGTTCTTCTTCACAAAGTTGGGATGGTTCAGGATATCATTTaGTACCAGGGGCTCCTTGTGGGTAATGTGTTGCTGCTCCAGAGG +
Preference number: 5 (lower is better)
Translates to: TQVLLHKVGMVQDII*YQGLLVGNVLLLQR
Trigger: CCTCTGGAGCAGCAACACATTACCCACAAGGAGCCCCTGGTAGCAAATGATATCCTGAACCATCCCAACTTTGTGAAGAAGAACTTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp TGCCTCCCTAAACTGGAAGGCTACGGTTATAATAGTAGATTTCGTAGAAACCTAACTGTGGTCTCCAGGTaGCTCAGCTGGTTCAGCACC +
Preference number: 5 (lower is better)
Translates to: CLPKLEGYGYNSRFRRNLTVVSR*LSWFST
Trigger: GGTGCTGAACCAGCTGAGCAACCTGGAGACCACAGT...TAGGTTTCTACGAAATCTACTATTATAACCGTAGCCTTCCAGTTTAGGGAGGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp TGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGTTCTTCTTCACAAAGTaGGGATGGTTCAGGATATCA +
Preference number: 5 (lower is better)
Translates to: CMPAHFFAENSVSRRATLFFFTK*GWFRIS
Trigger: TGATATCCTGAACCATCCCAACTTTGTGAAGAAGAA...CAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS GCA 90 bp TGTGCTGGGAAGACGGTGAAAATCCCTTCTTCTGAGCTGAAATATTaGCACTTGATTCCAGGGTTAGATTTCAGGTTGTCTGCGAGAACC +
Preference number: 5 (lower is better)
Translates to: CAGKTVKIPSSELKY*HLIPGLDFRLSART
Trigger: GGTTCTCGCAGACAACCTGAAATCTAACCCTGGAATCAAGTGGCAATATTTCAGCTCAGAAGAAGGGATTTTCACCGTCTTCCCAGCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 90 bp CGGTCACTGAAGCTGTTACACAAGTTCTTCTTCACAAAGTTGGGATaGTTCAGGATATCATTTGCTACCAGGGGCTCCTTGTGGGTAATG +
Preference number: 5 (lower is better)
Translates to: RSLKLLHKFFFTKLG*FRISFATRGSLWVM
Trigger: CATTACCCACAAGGAGCCCCTGGTAGCAAATGATATCCTGAACCATCCCAACTTTGTGAAGAAGAACTTGTGTAACAGCTTCAGTGACCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp TGTATGCCGGCTCATTTCTTCGCAGAGAATTCTGTGTCACGCAGGGCCACTCTGAGAATCATTACGGAGTaGTTCAGAAAGCCATTTTCT +
Preference number: 5 (lower is better)
Translates to: CMPAHFFAENSVSRRATLRIITE*FRKPFS
Trigger: AGAAAATGGCTTTCTGAACAACTCCGTAATGATTCT...CAGAGTGGCCCTGCGTGACACAGAATTCTCTGCGAAGAAATGAGCCGGCATACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp CCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCAATGTGAGGCAAGCACTGGGTaGGCCCAGAAGATCCAGTCG +
Preference number: 5 (lower is better)
Translates to: PIIHRVYFLKAFLQWCQCEASTG*AQKIQS
Trigger: CGACTGGATCTTCTGGGCCAACCCAGTGCTTGCCTC...ACATTGACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCAATGTTGCTCCACCATGCGTTaGGTCTCTGGCTGGCTGAGG +
Preference number: 5 (lower is better)
Translates to: PIIHRVYFLKAFLQWCQCCSTMR*VSGWLR
Trigger: CCTCAGCCAGCCAGAGACCAAACGCATGGTGGAGCA...ACATTGACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAGAGTCGCAGGTCTCGTaGACGATGCCGACAAACGCG +
Preference number: 5 (lower is better)
Translates to: HCSTSHHSSCIFSEGFSSESQVS*TMPTNA
Trigger: CGCGTTTGTCGGCATCGTCAACGAGACCTGCGACTC...TGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAACTGCTGCAGGGCATCTaGCAGGCCTGGGTCGATAGC +
Preference number: 5 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQLLQGI*QAWVDS
Trigger: GCTATCGACCCAGGCCTGCAAGATGCCCTGCAGCAG...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCAATGTAAGTCTCGTCCTGGGTaGAAGGCTCGGCTGTTCACG +
Preference number: 5 (lower is better)
Translates to: PIIHRVYFLKAFLQWCQCKSRPG*KARLFT
Trigger: CGTGAACAGCCGAGCCTTCAACCCAGGACGAGACTT...ACATTGACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCCCTTACACCGGAACTaGTGTGCTGGGAAGACGGTG +
Preference number: 5 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCPLHRN*CAGKTV
Trigger: CACCGTCTTCCCAGCACACAAGTTCCGGTGTAAGGG...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTACTGTGGTCTCCAGGTaGCTCAGCTGGTTCAGCACC +
Preference number: 5 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCTVVSR*LSWFST
Trigger: GGTGCTGAACCAGCTGAGCAACCTGGAGACCACAGT...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp TCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGCGGTGGTACAGGAGCTaGCTGCTCGGTACAGTGTTG +
Preference number: 5 (lower is better)
Translates to: STSHHSSCIFSEGFSSMVRWYRS*LLGTVL
Trigger: CAACACTGTACCGAGCAGCAAGCTCCTGTACCACCG...CACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CCAACTATATATAAATGGAGATTTACACACACACGGTGCAAAGAACGCCTTCATATGCCGACAAACGCGTaGGTTCCTGGGATCCTTGTC +
Preference number: 5 (lower is better)
Translates to: PTIYKWRFTHTRCKERLHMPTNA*VPGILV
Trigger: GACAAGGATCCCAGGAACCAACGCGTTTGTCGGCAT...ATGAAGGCGTTCTTTGCACCGTGTGTGTGTAAATCTCCATTTATATATAGTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS GCA 90 bp ATTGGCTACTGCATGAAGATACCACTGTCTCCTAGTGGGATCAAATaGTTTGTCCATAAGGGAACCAGGATAAATTCTGAGGACGCCATT +
Preference number: 5 (lower is better)
Translates to: IGYCMKIPLSPSGIK*FVHKGTRINSEDAI
Trigger: AATGGCGTCCTCAGAATTTATCCTGGTTCCCTTATGGACAAAGCATTTGATCCCACTAGGAGACAGTGGTATCTTCATGCAGTAGCCAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CCAACTATATATAAATGGAGATTTACACACACACGGTGCAAAGAACGCCTTCATGGAGGCTTCTACCACTaGCTTGTTCCGATTGACCAC +
Preference number: 5 (lower is better)
Translates to: PTIYKWRFTHTRCKERLHGGFYH*LVPIDH
Trigger: GTGGTCAATCGGAACAAGCAAGTGGTAGAAGCCTCC...ATGAAGGCGTTCTTTGCACCGTGTGTGTGTAAATCTCCATTTATATATAGTTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp CCAACTATATATAAATGGAGATTTACACACACACGGTGCAAAGAACGCCTTCATACCATCATGCTGCCTTaGATCACAGGCAAGGCTGTC +
Preference number: 5 (lower is better)
Translates to: PTIYKWRFTHTRCKERLHTIMLP*ITGKAV
Trigger: GACAGCCTTGCCTGTGATCAAAGGCAGCATGATGGT...ATGAAGGCGTTCTTTGCACCGTGTGTGTGTAAATCTCCATTTATATATAGTTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp AATCCTTTACTTAGAAATTTTGAGATGCATCGTTTAGAGCCTAAGGTGAGCTCTAGTGTTGCCAGCTGCTaGAAGTGGAGGCAAGCACTG +
Preference number: 5 (lower is better)
Translates to: NPLLRNFEMHRLEPKVSSSVASC*KWRQAL
Trigger: CAGTGCTTGCCTCCACTTCAAGCAGCTGGCAACACT...AGAGCTCACCTTAGGCTCTAAACGATGCATCTCAAAATTTCTAAGTAAAGGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp CATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGCCGACAAACGCGTaGGTTCCTGGGATCCTTGTC +
Preference number: 5 (lower is better)
Translates to: HCSTSHHSSCIFSEGFSSMPTNA*VPGILV
Trigger: GACAAGGATCCCAGGAACCAACGCGTTTGTCGGCAT...TGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CAAATGTTCTCTATATTCATGTTCATGTGTTTAGAGCTTGGTAGACAAGTACACTCCATTCGGTGGCAGTaGAGACAGAGACGGTCCACC +
Preference number: 5 (lower is better)
Translates to: QMFSIFMFMCLELGRQVHSIRWQ*RQRRST
Trigger: GGTGGACCGTCTCTGTCTCAACTGCCACCGAATGGA...GTGTACTTGTCTACCAAGCTCTAAACACATGAACATGAATATAGAGAACATTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTTTGCCAGTACACTCATaGACCTCCAGGGGGCACTCA +
Preference number: 5 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCLPVHS*TSRGHS
Trigger: TGAGTGCCCCCTGGAGGTCAATGAGTGTACTGGCAA...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp TCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGGGAGGCTTCTACCACTaGCTTGTTCCGATTGACCAC +
Preference number: 5 (lower is better)
Translates to: STSHHSSCIFSEGFSSMVGGFYH*LVPIDH
Trigger: GTGGTCAATCGGAACAAGCAAGTGGTAGAAGCCTCC...CACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp AATCCTTTACTTAGAAATTTTGAGATGCATCGTTTAGAGCCTAAGGTGAGCTCTCCAGTCTCCCTCAACTaGTTGATGTGCCAAGACAGG +
Preference number: 5 (lower is better)
Translates to: NPLLRNFEMHRLEPKVSSPVSLN*LMCQDR
Trigger: CCTGTCTTGGCACATCAACAAGTTGAGGGAGACTGG...AGAGCTCACCTTAGGCTCTAAACGATGCATCTCAAAATTTCTAAGTAAAGGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCCAGTCTCCCTCAACTaGTTGATGTGCCAAGACAGG +
Preference number: 5 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCPVSLN*LMCQDR
Trigger: CCTGTCTTGGCACATCAACAAGTTGAGGGAGACTGG...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CAAATGTTCTCTATATTCATGTTCATGTGTTTAGAGCTTGGTAGACAAGTACACAGTGTTGCCAGCTGCTaGAAGTGGAGGCAAGCACTG +
Preference number: 5 (lower is better)
Translates to: QMFSIFMFMCLELGRQVHSVASC*KWRQAL
Trigger: CAGTGCTTGCCTCCACTTCAAGCAGCTGGCAACACT...GTGTACTTGTCTACCAAGCTCTAAACACATGAACATGAATATAGAGAACATTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CAAATGTTCTCTATATTCATGTTCATGTGTTTAGAGCTTGGTAGACAAGTACACGGACGCCATTGGGTGTaGCTATGTAACGGCGGACAA +
Preference number: 5 (lower is better)
Translates to: QMFSIFMFMCLELGRQVHGRHWV*LCNGGQ
Trigger: TTGTCCGCCGTTACATAGCAACACCCAATGGCGTCC...GTGTACTTGTCTACCAAGCTCTAAACACATGAACATGAATATAGAGAACATTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp TGCCTCCCTAAACTGGAAGGCTACGGTTATAATAGTAGATTTCGTAGAAACCTATTTCTGTTCTCTGCATaGGTGAGGTTGCCAGTACAC +
Preference number: 5 (lower is better)
Translates to: CLPKLEGYGYNSRFRRNLFLFSA*VRLPVH
Trigger: GTGTACTGGCAACCTCACCAATGCAGAGAACAGAAA...TAGGTTTCTACGAAATCTACTATTATAACCGTAGCCTTCCAGTTTAGGGAGGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp CCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCAATGTCATGTCTGTGTTTGCTaGGAACCGAGTGCTGTTGCT +
Preference number: 5 (lower is better)
Translates to: PIIHRVYFLKAFLQWCQCHVCVC*EPSAVA
Trigger: AGCAACAGCACTCGGTTCCAAGCAAACACAGACATG...ACATTGACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CAAATGTTCTCTATATTCATGTTCATGTGTTTAGAGCTTGGTAGACAAGTACACACCATCATGCTGCCTTaGATCACAGGCAAGGCTGTC +
Preference number: 5 (lower is better)
Translates to: QMFSIFMFMCLELGRQVHTIMLP*ITGKAV
Trigger: GACAGCCTTGCCTGTGATCAAAGGCAGCATGATGGT...GTGTACTTGTCTACCAAGCTCTAAACACATGAACATGAATATAGAGAACATTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAAGTCTCCCTCAACTTGTaGATGTGCCAAGACAGGGAC +
Preference number: 5 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQVSLNL*MCQDRD
Trigger: GTCCCTGTCTTGGCACATCAACAAGTTGAGGGAGAC...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CAAATGTTCTCTATATTCATGTTCATGTGTTTAGAGCTTGGTAGACAAGTACACGCTATGAACCGGGTGTaGCTGATGATGCCTCTGTCT +
Preference number: 5 (lower is better)
Translates to: QMFSIFMFMCLELGRQVHAMNRV*LMMPLS
Trigger: AGACAGAGGCATCATCAGCAACACCCGGTTCATAGC...GTGTACTTGTCTACCAAGCTCTAAACACATGAACATGAATATAGAGAACATTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CAAATGTTCTCTATATTCATGTTCATGTGTTTAGAGCTTGGTAGACAAGTACACGTGGACATTTTCCTTTaGGTCTCACTGGTGGCTGGA +
Preference number: 5 (lower is better)
Translates to: QMFSIFMFMCLELGRQVHVDIFL*VSLVAG
Trigger: TCCAGCCACCAGTGAGACCAAAAGGAAAATGTCCAC...GTGTACTTGTCTACCAAGCTCTAAACACATGAACATGAATATAGAGAACATTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCAATGTGACGGGTATTTCCGGTaGTATCACCACAATACACAG +
Preference number: 5 (lower is better)
Translates to: PIIHRVYFLKAFLQWCQCDGYFR*YHHNTQ
Trigger: CTGTGTATTGTGGTGATACAACCGGAAATACCCGTC...ACATTGACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp TGCCTCCCTAAACTGGAAGGCTACGGTTATAATAGTAGATTTCGTAGAAACCTAGCTGCTCATTTCCATTaGTGTCATCCATTCATCTGT +
Preference number: 5 (lower is better)
Translates to: CLPKLEGYGYNSRFRRNLAAHFH*CHPFIC
Trigger: ACAGATGAATGGATGACACAAATGGAAATGAGCAGC...TAGGTTTCTACGAAATCTACTATTATAACCGTAGCCTTCCAGTTTAGGGAGGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp CCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCAATGTGTGGGATCAAATGCTTaGTCCATAAGGGAACCAGGA +
Preference number: 5 (lower is better)
Translates to: PIIHRVYFLKAFLQWCQCVGSNA*SIREPG
Trigger: TCCTGGTTCCCTTATGGACAAAGCATTTGATCCCAC...ACATTGACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAAGGTTCAGGATATCATTaGCTACCAGGGGCTCCTTGT +
Preference number: 5 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQGSGYH*LPGAPC
Trigger: ACAAGGAGCCCCTGGTAGCAAATGATATCCTGAACC...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATCTGCATTGGTGAGGTaGCCAGTACACTCATTGACC +
Preference number: 5 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQSALVR*PVHSLT
Trigger: GGTCAATGAGTGTACTGGCAACCTCACCAATGCAGA...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCATTTCTGTTCTCTGCATaGGTGAGGTTGCCAGTACAC +
Preference number: 5 (lower is better)
Translates to: HCSTSHHSSCIFSEGFSSFLFSA*VRLPVH
Trigger: GTGTACTGGCAACCTCACCAATGCAGAGAACAGAAA...TGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCACTGTCATTCTCCAGGTaGGACATACGCACTGACATT +
Preference number: 5 (lower is better)
Translates to: HCSTSHHSSCIFSEGFSSLSFSR*DIRTDI
Trigger: AATGTCAGTGCGTATGTCCAACCTGGAGAATGACAG...TGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CCAACTATATATAAATGGAGATTTACACACACACGGTGCAAAGAACGCCTTCATCTGCTCGGTACAGTGTaGAGGTTTTTCAATTGTTTG +
Preference number: 5 (lower is better)
Translates to: PTIYKWRFTHTRCKERLHLLGTV*RFFNCL
Trigger: CAAACAATTGAAAAACCTCAACACTGTACCGAGCAG...ATGAAGGCGTTCTTTGCACCGTGTGTGTGTAAATCTCCATTTATATATAGTTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp TGCCTCCCTAAACTGGAAGGCTACGGTTATAATAGTAGATTTCGTAGAAACCTAATGAAGCACCTTATTTaGTTGCCACCATCTTGGTTA +
Preference number: 5 (lower is better)
Translates to: CLPKLEGYGYNSRFRRNLMKHLI*LPPSWL
Trigger: TAACCAAGATGGTGGCAACAAAATAAGGTGCTTCAT...TAGGTTTCTACGAAATCTACTATTATAACCGTAGCCTTCCAGTTTAGGGAGGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS-3UTR CAA 90 bp TCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGCTTCGCTCTCTCCATTaGAGATCTTCTCTGTGTAAA +
Preference number: 5 (lower is better)
Translates to: STSHHSSCIFSEGFSSMVLRSLH*RSSLCK
Trigger: TTTACACAGAGAAGATCTCAAATGGAGAGAGCGAAG...CACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp TCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGGTCAACACAGAAATCTaGTCATGCTCATCAATGGCA +
Preference number: 5 (lower is better)
Translates to: STSHHSSCIFSEGFSSMVVNTEI*SCSSMA
Trigger: TGCCATTGATGAGCATGACAAGATTTCTGTGTTGAC...CACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTGTTGAGGTTTTTCAATaGTTTGACGGGTATTTCCGG +
Preference number: 5 (lower is better)
Translates to: QLPIIHRVYFLKAFLQWCVEVFQ*FDGYFR
Trigger: CCGGAAATACCCGTCAAACAATTGAAAAACCTCAAC...ACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp TCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGCTGCTCGGTACAGTGTaGAGGTTTTTCAATTGTTTG +
Preference number: 5 (lower is better)
Translates to: STSHHSSCIFSEGFSSMVLLGTV*RFFNCL
Trigger: CAAACAATTGAAAAACCTCAACACTGTACCGAGCAG...CACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp TCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGGCTGCTCATTTCCATTaGTGTCATCCATTCATCTGT +
Preference number: 5 (lower is better)
Translates to: STSHHSSCIFSEGFSSMVAAHFH*CHPFIC
Trigger: ACAGATGAATGGATGACACAAATGGAAATGAGCAGC...CACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAACTTGATACATTGGTGTaGAAGTTCCCATCAAACTCC +
Preference number: 5 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQLDTLV*KFPSNS
Trigger: GGAGTTTGATGGGAACTTCAACACCAATGTATCAAG...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCAATGTCTGAAATATTGCCACTaGATTCCAGGGTTAGATTTC +
Preference number: 5 (lower is better)
Translates to: PIIHRVYFLKAFLQWCQCLKYCH*IPGLDF
Trigger: GAAATCTAACCCTGGAATCAAGTGGCAATATTTCAG...ACATTGACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAAAGCACCTTATTTTGTaGCCACCATCTTGGTTACAA +
Preference number: 5 (lower is better)
Translates to: HCSTSHHSSCIFSEGFSSKHLIL*PPSWLQ
Trigger: TTGTAACCAAGATGGTGGCAACAAAATAAGGTGCTT...TGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGAAGCACCTTATTTaGTTGCCACCATCTTGGTTA +
Preference number: 5 (lower is better)
Translates to: HCSTSHHSSCIFSEGFSSMKHLI*LPPSWL
Trigger: TAACCAAGATGGTGGCAACAAAATAAGGTGCTTCAT...TGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAATGGTGTCAATGTTTCTTCTTCACAAAGTaGGGATGGTTCAGGATATCA +
Preference number: 5 (lower is better)
Translates to: PIIHRVYFLKAFLQWCQCFFFTK*GWFRIS
Trigger: TGATATCCTGAACCATCCCAACTTTGTGAAGAAGAA...ACATTGACACCATTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CAAATGTTCTCTATATTCATGTTCATGTGTTTAGAGCTTGGTAGACAAGTACACACATTCACATTCATTTaGCTCCATTCGGTGGCAGTT +
Preference number: 5 (lower is better)
Translates to: QMFSIFMFMCLELGRQVHTFTFI*LHSVAV
Trigger: AACTGCCACCGAATGGAGCAAAATGAATGTGAATGT...GTGTACTTGTCTACCAAGCTCTAAACACATGAACATGAATATAGAGAACATTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp ATTGCTCAACTTCCCATCATTCATCGTGTATATTTTCTGAAGGCTTTTCTTCAAACTGTTCTTGATACATaGGTGTTGAAGTTCCCATCA +
Preference number: 5 (lower is better)
Translates to: IAQLPIIHRVYFLKAFLQTVLDT*VLKFPS
Trigger: TGATGGGAACTTCAACACCAATGTATCAAGAACAGT...TTGAAGAAAAGCCTTCAGAAAATATACACGATGAATGATGGGAAGTTGAGCAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS-3UTR CAA 90 bp CAAATGTTCTCTATATTCATGTTCATGTGTTTAGAGCTTGGTAGACAAGTACACAGAATCATTACGGAGTaGTTCAGAAAGCCATTTTCT +
Preference number: 5 (lower is better)
Translates to: QMFSIFMFMCLELGRQVHRIITE*FRKPFS
Trigger: AGAAAATGGCTTTCTGAACAACTCCGTAATGATTCT...GTGTACTTGTCTACCAAGCTCTAAACACATGAACATGAATATAGAGAACATTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097955.3
CDS CAA 90 bp CCCCAGCTCCTCGGCAGCCAGCCTCCGCATCTGGCTCGCCAGCACTaGCGCCTCGTCCAGGATGGAGAAGTCGGCGTCGGCCACGGCGCC +
Preference number: 6 (lower is better)
Translates to: PQLLGSQPPHLARQH*RLVQDGEVGVGHGA
Trigger: GGCGCCGTGGCCGACGCCGACTTCTCCATCCTGGACGAGGCGCAAGTGCTGGCGAGCCAGATGCGGAGGCTGGCTGCCGAGGAGCTGGGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS GCA 72 bp TCGGCAGCCAGCCTCCGCATCTGGCTCGCCAGCACTTaGGCCTCGTCCAGGATGGAGAAGTCGGCGTCGGCC +
Preference number: 6 (lower is better)
Translates to: SAASLRIWLAST*ASSRMEKSASA
Trigger: GGCCGACGCCGACTTCTCCATCCTGGACGAGGCGCAAGTGCTGGCGAGCCAGATGCGGAGGCTGGCTGCCGA
69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp CTCGGCAGCCAGCCTCCGCATCTGGCTCGCCAGCACTaGCGCCTCGTCCAGGATGGAGAAGTCGGCGTCGGC +
Preference number: 6 (lower is better)
Translates to: LGSQPPHLARQH*RLVQDGEVGVG
Trigger: GCCGACGCCGACTTCTCCATCCTGGACGAGGCGCAAGTGCTGGCGAGCCAGATGCGGAGGCTGGCTGCCGAG
69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 72 bp GCATCTGGCTCGCCAGCACTTGCGCCTCGTCCAGGATaGAGAAGTCGGCGTCGGCCACGGCGCCCAAGATCC +
Preference number: 6 (lower is better)
Translates to: ASGSPALAPRPG*RSRRRPRRPRS
Trigger: GGATCTTGGGCGCCGTGGCCGACGCCGACTTCTCCATCCTGGACGAGGCGCAAGTGCTGGCGAGCCAGATGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 72 bp GCACTGAGGATGACCTGGGCGGCGTCCTTGGCAATCTaGAGCTGGGTGTCCGTGACTGAGGCCCCATGGTCC +
Preference number: 6 (lower is better)
Translates to: ALRMTWAASLAI*SWVSVTEAPWS
Trigger: GGACCATGGGGCCTCAGTCACGGACACCCAGCTCCAGATTGCCAAGGACGCCGCCCAGGTCATCCTCAGTGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS GCA 72 bp GCTTCGAATCAGCTGGAACGCCCTGTGAAAGCCTACTaGGTGCTGGGTGGGGCTGTCGGAGGGCTTGACGCT +
Preference number: 6 (lower is better)
Translates to: ASNQLERPVKAY*VLGGAVGGLDA
Trigger: AGCGTCAAGCCCTCCGACAGCCCCACCCAGCACGCAGTAGGCTTTCACAGGGCGTTCCAGCTGATTCGAAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 72 bp AGGATGACCTGGGCGGCGTCCTTGGCAATCTGGAGCTaGGTGTCCGTGACTGAGGCCCCATGGTCCAGAATC +
Preference number: 6 (lower is better)
Translates to: RMTWAASLAIWS*VSVTEAPWSRI
Trigger: GATTCTGGACCATGGGGCCTCAGTCACGGACACCCAGCTCCAGATTGCCAAGGACGCCGCCCAGGTCATCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS TCA 72 bp CTGTTGCTGGTGCTTCGAATCAGCTGGAACGCCCTGTaGAAGCCTACTGCGTGCTGGGTGGGGCTGTCGGAG +
Preference number: 6 (lower is better)
Translates to: LLLVLRISWNAL*KPTACWVGLSE
Trigger: CTCCGACAGCCCCACCCAGCACGCAGTAGGCTTTCACAGGGCGTTCCAGCTGATTCGAAGCACCAGCAACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp TCATCAATGGCACTGAGGATGACCTGGGCGGCGTCCTaGGCAATCTGGAGCTGGGTGTCCGTGACTGAGGCC +
Preference number: 6 (lower is better)
Translates to: SSMALRMTWAAS*AIWSWVSVTEA
Trigger: GGCCTCAGTCACGGACACCCAGCTCCAGATTGCCAAGGACGCCGCCCAGGTCATCCTCAGTGCCATTGATGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 90 bp TTGTCATGCTCATCAATGGCACTGAGGATGACCTGGGCGGCGTCCTaGGCAATCTGGAGCTGGGTGTCCGTGACTGAGGCCCCATGGTCC +
Preference number: 6 (lower is better)
Translates to: LSCSSMALRMTWAAS*AIWSWVSVTEAPWS
Trigger: GGACCATGGGGCCTCAGTCACGGACACCCAGCTCCAGATTGCCAAGGACGCCGCCCAGGTCATCCTCAGTGCCATTGATGAGCATGACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS GCA 72 bp GGGCTCCTTGTGGGTAATGTGTTGCTGCTCCAGAGGTaGATGACCCTTGGGGTCAACGAGGGTCGGATGAGC +
Preference number: 6 (lower is better)
Translates to: GLLVGNVLLLQR*MTLGVNEGRMS
Trigger: GCTCATCCGACCCTCGTTGACCCCAAGGGTCATGCACCTCTGGAGCAGCAACACATTACCCACAAGGAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 72 bp CCATCATGGAAGGCGGAATTGTGCAGCAGTCCTGGATaGCGGTCAGCGGGGATGTCAGGTGGGCTGTATAGG +
Preference number: 6 (lower is better)
Translates to: PSWKAELCSSPG*RSAGMSGGLYR
Trigger: CCTATACAGCCCACCTGACATCCCCGCTGACCGCCATCCAGGACTGCTGCACAATTCCGCCTTCCATGATGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 72 bp GCTGTTGACACACTGCTGCAGGGCATCTTGCAGGCCTaGGTCGATAGCCGTGTATGTCACTGGCTCCTGGTG +
Preference number: 6 (lower is better)
Translates to: AVDTLLQGILQA*VDSRVCHWLLV
Trigger: CACCAGGAGCCAGTGACATACACGGCTATCGACCCAGGCCTGCAAGATGCCCTGCAGCAGTGTGTCAACAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 72 bp AGTTCCCGAGCGGCCCCAGTAGCGTCGCCTCCTTTCTaGACTGTGTACGTGTCGCTCCATGACTGCAGCTAT +
Preference number: 6 (lower is better)
Translates to: SSRAAPVASPPF*TVYVSLHDCSY
Trigger: ATAGCTGCAGTCATGGAGCGACACGTACACAGTCCAGAAAGGAGGCGACGCTACTGGGGCCGCTCGGGAACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS TCA 72 bp GGCGTCCTTGGCAATCTGGAGCTGGGTGTCCGTGACTaGGGCCCCATGGTCCAGAATCACGACTATGTGCTT +
Preference number: 6 (lower is better)
Translates to: GVLGNLELGVRD*GPMVQNHDYVL
Trigger: AAGCACATAGTCGTGATTCTGGACCATGGGGCCTCAGTCACGGACACCCAGCTCCAGATTGCCAAGGACGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 72 bp CCCATGGTCCAGAATCACGACTATGTGCTTGGACTGTaGCCGGACGGTAGAGACGTAGATGGGTCGACTGCG +
Preference number: 6 (lower is better)
Translates to: PMVQNHDYVLGL*PDGRDVDGSTA
Trigger: CGCAGTCGACCCATCTACGTCTCTACCGTCCGGCCACAGTCCAAGCACATAGTCGTGATTCTGGACCATGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 72 bp GTTGCCAGCTGCTTGAAGTGGAGGCAAGCACTGGGTTaGCCCAGAAGATCCAGTCGGTGGTACAGGAGCTTG +
Preference number: 6 (lower is better)
Translates to: VASCLKWRQALG*PRRSSRWYRSL
Trigger: CAAGCTCCTGTACCACCGACTGGATCTTCTGGGCCAACCCAGTGCTTGCCTCCACTTCAAGCAGCTGGCAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 72 bp GTTCCTGGGATCCTTGTCAGGCGGTACTTAGAGCAGTaGCTGCCGTGCACAAGGTTCGTCAAATCCCCCACC +
Preference number: 6 (lower is better)
Translates to: VPGILVRRYLEQ*LPCTRFVKSPT
Trigger: GGTGGGGGATTTGACGAACCTTGTGCACGGCAGCCACTGCTCTAAGTACCGCCTGACAAGGATCCCAGGAAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 90 bp AAGGCAAGAGAGTCGCAGGTCTCGTTGACGATGCCGACAAACGCGTaGGTTCCTGGGATCCTTGTCAGGCGGTACTTAGAGCAGTGGCTG +
Preference number: 6 (lower is better)
Translates to: KARESQVSLTMPTNA*VPGILVRRYLEQWL
Trigger: CAGCCACTGCTCTAAGTACCGCCTGACAAGGATCCCAGGAACCAACGCGTTTGTCGGCATCGTCAACGAGACCTGCGACTCTCTTGCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 90 bp TCCACCATGCTGCAAGCACAGAAGGCAAGAGAGTCGCAGGTCTCGTaGACGATGCCGACAAACGCGTTGGTTCCTGGGATCCTTGTCAGG +
Preference number: 6 (lower is better)
Translates to: STMLQAQKARESQVS*TMPTNALVPGILVR
Trigger: CCTGACAAGGATCCCAGGAACCAACGCGTTTGTCGGCATCGTCAACGAGACCTGCGACTCTCTTGCCTTCTGTGCTTGCAGCATGGTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 90 bp CATCCTCTGGTTACATCTGCTGTTGACACACTGCTGCAGGGCATCTaGCAGGCCTGGGTCGATAGCCGTGTATGTCACTGGCTCCTGGTG +
Preference number: 6 (lower is better)
Translates to: HPLVTSAVDTLLQGI*QAWVDSRVCHWLLV
Trigger: CACCAGGAGCCAGTGACATACACGGCTATCGACCCAGGCCTGCAAGATGCCCTGCAGCAGTGTGTCAACAGCAGATGTAACCAGAGGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS TCA 72 bp TGCAAGCACAGAAGGCAAGAGAGTCGCAGGTCTCGTTaGCGATGCCGACAAACGCGTTGGTTCCTGGGATCC +
Preference number: 6 (lower is better)
Translates to: CKHRRQESRRSR*RCRQTRWFLGS
Trigger: GGATCCCAGGAACCAACGCGTTTGTCGGCATCGTCAACGAGACCTGCGACTCTCTTGCCTTCTGTGCTTGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS GCA 72 bp ATCCTTGTCAGGCGGTACTTAGAGCAGTGGCTGCCGTaGACAAGGTTCGTCAAATCCCCCACCAGGCTAGTG +
Preference number: 6 (lower is better)
Translates to: ILVRRYLEQWLP*TRFVKSPTRLV
Trigger: CACTAGCCTGGTGGGGGATTTGACGAACCTTGTGCACGGCAGCCACTGCTCTAAGTACCGCCTGACAAGGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 72 bp GGTCTCGTTGACGATGCCGACAAACGCGTTGGTTCCTaGGATCCTTGTCAGGCGGTACTTAGAGCAGTGGCT +
Preference number: 6 (lower is better)
Translates to: GLVDDADKRVGS*DPCQAVLRAVA
Trigger: AGCCACTGCTCTAAGTACCGCCTGACAAGGATCCCAGGAACCAACGCGTTTGTCGGCATCGTCAACGAGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp TGTTGCCAGCTGCTTGAAGTGGAGGCAAGCACTGGGTaGGCCCAGAAGATCCAGTCGGTGGTACAGGAGCTT +
Preference number: 6 (lower is better)
Translates to: CCQLLEVEASTG*AQKIQSVVQEL
Trigger: AAGCTCCTGTACCACCGACTGGATCTTCTGGGCCAACCCAGTGCTTGCCTCCACTTCAAGCAGCTGGCAACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp GAGTCGCAGGTCTCGTTGACGATGCCGACAAACGCGTaGGTTCCTGGGATCCTTGTCAGGCGGTACTTAGAG +
Preference number: 6 (lower is better)
Translates to: ESQVSLTMPTNA*VPGILVRRYLE
Trigger: CTCTAAGTACCGCCTGACAAGGATCCCAGGAACCAACGCGTTTGTCGGCATCGTCAACGAGACCTGCGACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp CTGCAAGCACAGAAGGCAAGAGAGTCGCAGGTCTCGTaGACGATGCCGACAAACGCGTTGGTTCCTGGGATC +
Preference number: 6 (lower is better)
Translates to: LQAQKARESQVS*TMPTNALVPGI
Trigger: GATCCCAGGAACCAACGCGTTTGTCGGCATCGTCAACGAGACCTGCGACTCTCTTGCCTTCTGTGCTTGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 90 bp GTGGTCTCCAGGTTGCTCAGCTGGTTCAGCACCATCATGCTGCCTTaGATCACAGGCAAGGCTGTCCGGTCTGGGATTCCATACTTCCCA +
Preference number: 6 (lower is better)
Translates to: VVSRLLSWFSTIMLP*ITGKAVRSGIPYFP
Trigger: TGGGAAGTATGGAATCCCAGACCGGACAGCCTTGCCTGTGATCAAAGGCAGCATGATGGTGCTGAACCAGCTGAGCAACCTGGAGACCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 90 bp GTTCAGGATATCATTTGCTACCAGGGGCTCCTTGTGGGTAATGTGTaGCTGCTCCAGAGGTGCATGACCCTTGGGGTCAACGAGGGTCGG +
Preference number: 6 (lower is better)
Translates to: VQDIICYQGLLVGNV*LLQRCMTLGVNEGR
Trigger: CCGACCCTCGTTGACCCCAAGGGTCATGCACCTCTGGAGCAGCAACACATTACCCACAAGGAGCCCCTGGTAGCAAATGATATCCTGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 90 bp ACACCGAAACAGTCCCCACTTTCCATCCTCTGGTTACATCTGCTGTaGACACACTGCTGCAGGGCATCTTGCAGGCCTGGGTCGATAGCC +
Preference number: 6 (lower is better)
Translates to: TPKQSPLSILWLHLL*THCCRASCRPGSIA
Trigger: GGCTATCGACCCAGGCCTGCAAGATGCCCTGCAGCAGTGTGTCAACAGCAGATGTAACCAGAGGATGGAAAGTGGGGACTGTTTCGGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS TCA 72 bp CCTGGGTCGATAGCCGTGTATGTCACTGGCTCCTGGTaGACCTCACAGCTCGGGTTTCTGTTCTCTGCATTG +
Preference number: 6 (lower is better)
Translates to: PGSIAVYVTGSW*TSQLGFLFSAL
Trigger: CAATGCAGAGAACAGAAACCCGAGCTGTGAGGTTCACCAGGAGCCAGTGACATACACGGCTATCGACCCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS GCA 72 bp AGTTCCCATCAAACTCCATCATGGAAGGCGGAATTGTaGAGCAGTCCTGGATGGCGGTCAGCGGGGATGTCA +
Preference number: 6 (lower is better)
Translates to: SSHQTPSWKAEL*SSPGWRSAGMS
Trigger: TGACATCCCCGCTGACCGCCATCCAGGACTGCTGCACAATTCCGCCTTCCATGATGGAGTTTGATGGGAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS GCA 72 bp GACAGCATGACGGTTGGACTTTCTAGTGTTGCCAGCTaGTTGAAGTGGAGGCAAGCACTGGGTTGGCCCAGA +
Preference number: 6 (lower is better)
Translates to: DSMTVGLSSVAS*LKWRQALGWPR
Trigger: TCTGGGCCAACCCAGTGCTTGCCTCCACTTCAAGCAGCTGGCAACACTAGAAAGTCCAACCGTCATGCTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS GCA 72 bp TTACATCTGCTGTTGACACACTGCTGCAGGGCATCTTaGAGGCCTGGGTCGATAGCCGTGTATGTCACTGGC +
Preference number: 6 (lower is better)
Translates to: LHLLLTHCCRAS*RPGSIAVYVTG
Trigger: GCCAGTGACATACACGGCTATCGACCCAGGCCTGCAAGATGCCCTGCAGCAGTGTGTCAACAGCAGATGTAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 72 bp ATAGGCCGTGTAATGCTCCACCATGCGTTTGGTCTCTaGCTGGCTGAGGTGCTCATAGGGGGAGGAAAAGCT +
Preference number: 6 (lower is better)
Translates to: IGRVMLHHAFGL*LAEVLIGGGKA
Trigger: AGCTTTTCCTCCCCCTATGAGCACCTCAGCCAGCCAGAGACCAAACGCATGGTGGAGCATTACACGGCCTAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 72 bp ATCTTGCAGGCCTGGGTCGATAGCCGTGTATGTCACTaGCTCCTGGTGAACCTCACAGCTCGGGTTTCTGTT +
Preference number: 6 (lower is better)
Translates to: ILQAWVDSRVCH*LLVNLTARVSV
Trigger: AACAGAAACCCGAGCTGTGAGGTTCACCAGGAGCCAGTGACATACACGGCTATCGACCCAGGCCTGCAAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp AGGTTGCTCAGCTGGTTCAGCACCATCATGCTGCCTTaGATCACAGGCAAGGCTGTCCGGTCTGGGATTCCA +
Preference number: 6 (lower is better)
Translates to: RLLSWFSTIMLP*ITGKAVRSGIP
Trigger: TGGAATCCCAGACCGGACAGCCTTGCCTGTGATCAAAGGCAGCATGATGGTGCTGAACCAGCTGAGCAACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp GTTACATCTGCTGTTGACACACTGCTGCAGGGCATCTaGCAGGCCTGGGTCGATAGCCGTGTATGTCACTGG +
Preference number: 6 (lower is better)
Translates to: VTSAVDTLLQGI*QAWVDSRVCHW
Trigger: CCAGTGACATACACGGCTATCGACCCAGGCCTGCAAGATGCCCTGCAGCAGTGTGTCAACAGCAGATGTAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 90 bp GGTCAGCGGGGATGTCAGGTGGGCTGTATAGGAGGCTTCTACCACTaGCTTGTTCCGATTGACCACATCCAGGTAGCGGTTGAACTTCTC +
Preference number: 6 (lower is better)
Translates to: GQRGCQVGCIGGFYH*LVPIDHIQVAVELL
Trigger: GAGAAGTTCAACCGCTACCTGGATGTGGTCAATCGGAACAAGCAAGTGGTAGAAGCCTCCTATACAGCCCACCTGACATCCCCGCTGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS TCA 72 bp AGAGGTCCATCAGAACCTTGTAGAAGTACCTCAGTGTaGAGTCGATACCCATCACAGCCACGGTGTGCCCGG +
Preference number: 6 (lower is better)
Translates to: RGPSEPCRSTSV*SRYPSQPRCAR
Trigger: CCGGGCACACCGTGGCTGTGATGGGTATCGACTTCACACTGAGGTACTTCTACAAGGTTCTGATGGACCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS TCA 72 bp CAAGTCGTCATCATGGTTCCCTACGTCCACCCCAGCTaGCAAAGGGTCATTGTTGCATGGAGGGTTCTCGCT +
Preference number: 6 (lower is better)
Translates to: QVVIMVPYVHPS*QRVIVAWRVLA
Trigger: AGCGAGAACCCTCCATGCAACAATGACCCTTTGTCAGCTGGGGTGGACGTAGGGAACCATGATGACGACTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030257.15
CDS GCA 72 bp CCTCCTTTCTGGACTGTGTACGTGTCGCTCCATGACTaGAGCTATGAACCGGGTGTTGCTGATGATGCCTCT +
Preference number: 6 (lower is better)
Translates to: PPFWTVYVSLHD*SYEPGVADDAS
Trigger: AGAGGCATCATCAGCAACACCCGGTTCATAGCTGCAGTCATGGAGCGACACGTACACAGTCCAGAAAGGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 72 bp CCATGTCTGTGTTTGCTTGGAACCGAGTGCTGTTGCTaGTGCTTCGAATCAGCTGGAACGCCCTGTGAAAGC +
Preference number: 6 (lower is better)
Translates to: PCLCLLGTECCC*CFESAGTPCES
Trigger: GCTTTCACAGGGCGTTCCAGCTGATTCGAAGCACCAGCAACAGCACTCGGTTCCAAGCAAACACAGACATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp ATCATTTGCTACCAGGGGCTCCTTGTGGGTAATGTGTaGCTGCTCCAGAGGTGCATGACCCTTGGGGTCAAC +
Preference number: 6 (lower is better)
Translates to: IICYQGLLVGNV*LLQRCMTLGVN
Trigger: GTTGACCCCAAGGGTCATGCACCTCTGGAGCAGCAACACATTACCCACAAGGAGCCCCTGGTAGCAAATGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp TCACAGCTCGGGTTTCTGTTCTCTGCATTGGTGAGGTaGCCAGTACACTCATTGACCTCCAGGGGGCACTCA +
Preference number: 6 (lower is better)
Translates to: SQLGFLFSALVR*PVHSLTSRGHS
Trigger: TGAGTGCCCCCTGGAGGTCAATGAGTGTACTGGCAACCTCACCAATGCAGAGAACAGAAACCCGAGCTGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS GCA 72 bp TGTCTGTGTTTGCTTGGAACCGAGTGCTGTTGCTGGTaGTTCGAATCAGCTGGAACGCCCTGTGAAAGCCTA +
Preference number: 6 (lower is better)
Translates to: CLCLLGTECCCW*FESAGTPCESL
Trigger: TAGGCTTTCACAGGGCGTTCCAGCTGATTCGAAGCACCAGCAACAGCACTCGGTTCCAAGCAAACACAGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 72 bp CAAGACAGGGACGAGTTCACAGGGACAGTGATAATCTaGCTGCCGAGAGGGAGGCTTAGGATATTTTGCCGA +
Preference number: 6 (lower is better)
Translates to: QDRDEFTGTVII*LPRGRLRIFCR
Trigger: TCGGCAAAATATCCTAAGCCTCCCTCTCGGCAGCCAGATTATCACTGTCCCTGTGAACTCGTCCCTGTCTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp GGATGTCAGGTGGGCTGTATAGGAGGCTTCTACCACTaGCTTGTTCCGATTGACCACATCCAGGTAGCGGTT +
Preference number: 6 (lower is better)
Translates to: GCQVGCIGGFYH*LVPIDHIQVAV
Trigger: AACCGCTACCTGGATGTGGTCAATCGGAACAAGCAAGTGGTAGAAGCCTCCTATACAGCCCACCTGACATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 90 bp CAAGCACTGGGTTGGCCCAGAAGATCCAGTCGGTGGTACAGGAGCTaGCTGCTCGGTACAGTGTTGAGGTTTTTCAATTGTTTGACGGGT +
Preference number: 6 (lower is better)
Translates to: QALGWPRRSSRWYRS*LLGTVLRFFNCLTG
Trigger: ACCCGTCAAACAATTGAAAAACCTCAACACTGTACCGAGCAGCAAGCTCCTGTACCACCGACTGGATCTTCTGGGCCAACCCAGTGCTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 90 bp GATTTCAGGTTGTCTGCGAGAACCGAATTTAAGTCTCGTCCTGGGTaGAAGGCTCGGCTGTTCACGGTAGTAGAGAGTCGATCGCAACTC +
Preference number: 6 (lower is better)
Translates to: DFRLSARTEFKSRPG*KARLFTVVESRSQL
Trigger: GAGTTGCGATCGACTCTCTACTACCGTGAACAGCCGAGCCTTCAACCCAGGACGAGACTTAAATTCGGTTCTCGCAGACAACCTGAAATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS GCA 72 bp AGGGCCCGTCAAGGAAATCAGCCCTGGATTGGCTACTaGATGAAGATACCACTGTCTCCTAGTGGGATCAAA +
Preference number: 6 (lower is better)
Translates to: RARQGNQPWIGY*MKIPLSPSGIK
Trigger: TTTGATCCCACTAGGAGACAGTGGTATCTTCATGCAGTAGCCAATCCAGGGCTGATTTCCTTGACGGGCCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp TTGTCTGCGAGAACCGAATTTAAGTCTCGTCCTGGGTaGAAGGCTCGGCTGTTCACGGTAGTAGAGAGTCGA +
Preference number: 6 (lower is better)
Translates to: LSARTEFKSRPG*KARLFTVVESR
Trigger: TCGACTCTCTACTACCGTGAACAGCCGAGCCTTCAACCCAGGACGAGACTTAAATTCGGTTCTCGCAGACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp GGTTGGCCCAGAAGATCCAGTCGGTGGTACAGGAGCTaGCTGCTCGGTACAGTGTTGAGGTTTTTCAATTGT +
Preference number: 6 (lower is better)
Translates to: GWPRRSSRWYRS*LLGTVLRFFNC
Trigger: ACAATTGAAAAACCTCAACACTGTACCGAGCAGCAAGCTCCTGTACCACCGACTGGATCTTCTGGGCCAACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp GCGGACAATGTACGTGTTCAGGCTGCTCATTTCCATTaGTGTCATCCATTCATCTGTGACGTGGCTGGTCGC +
Preference number: 6 (lower is better)
Translates to: ADNVRVQAAHFH*CHPFICDVAGR
Trigger: GCGACCAGCCACGTCACAGATGAATGGATGACACAAATGGAAATGAGCAGCCTGAACACGTACATTGTCCGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp CTGTTCTCTGCATTGGTGAGGTTGCCAGTACACTCATaGACCTCCAGGGGGCACTCACAAGGACATTCACAT +
Preference number: 6 (lower is better)
Translates to: LFSALVRLPVHS*TSRGHSQGHSH
Trigger: ATGTGAATGTCCTTGTGAGTGCCCCCTGGAGGTCAATGAGTGTACTGGCAACCTCACCAATGCAGAGAACAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 90 bp CTCGGGTTTCTGTTCTCTGCATTGGTGAGGTTGCCAGTACACTCATaGACCTCCAGGGGGCACTCACAAGGACATTCACATTCATTTTGC +
Preference number: 6 (lower is better)
Translates to: LGFLFSALVRLPVHS*TSRGHSQGHSHSFC
Trigger: GCAAAATGAATGTGAATGTCCTTGTGAGTGCCCCCTGGAGGTCAATGAGTGTACTGGCAACCTCACCAATGCAGAGAACAGAAACCCGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS TCA 72 bp GGTACGTCTTATAGCACTGGTCCAACGAACAGGTCCTaGCAGCGTCTGCCACAGTCAACACAGAAATCTTGT +
Preference number: 6 (lower is better)
Translates to: GTSYSTGPTNRS*QRLPQSTQKSC
Trigger: ACAAGATTTCTGTGTTGACTGTGGCAGACGCTGTCAGGACCTGTTCGTTGGACCAGTGCTATAAGACGTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS TCA 72 bp CCCGTCAAGGAAATCAGCCCTGGATTGGCTACTGCATaGAGATACCACTGTCTCCTAGTGGGATCAAATGCT +
Preference number: 6 (lower is better)
Translates to: PVKEISPGLATA*RYHCLLVGSNA
Trigger: AGCATTTGATCCCACTAGGAGACAGTGGTATCTTCATGCAGTAGCCAATCCAGGGCTGATTTCCTTGACGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS GCA 72 bp GGAACCAGGATAAATTCTGAGGACGCCATTGGGTGTTaGTATGTAACGGCGGACAATGTACGTGTTCAGGCT +
Preference number: 6 (lower is better)
Translates to: GTRINSEDAIGC*YVTADNVRVQA
Trigger: AGCCTGAACACGTACATTGTCCGCCGTTACATAGCAACACCCAATGGCGTCCTCAGAATTTATCCTGGTTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS TCA 72 bp AAGACAGCTGTGTACTGGATGAGTGAATTGTGTGGCTaGTTGTCACGACATAGCCAGCTCCTCCAACATCCA +
Preference number: 6 (lower is better)
Translates to: KTAVYWMSELCG*LSRHSQLLQHP
Trigger: TGGATGTTGGAGGAGCTGGCTATGTCGTGACAATCAGCCACACAATTCACTCATCCAGTACACAGCTGTCTT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp AGTCGGTGGTACAGGAGCTTGCTGCTCGGTACAGTGTaGAGGTTTTTCAATTGTTTGACGGGTATTTCCGGT +
Preference number: 6 (lower is better)
Translates to: SRWYRSLLLGTV*RFFNCLTGISG
Trigger: ACCGGAAATACCCGTCAAACAATTGAAAAACCTCAACACTGTACCGAGCAGCAAGCTCCTGTACCACCGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 90 bp AGAAGATCCAGTCGGTGGTACAGGAGCTTGCTGCTCGGTACAGTGTaGAGGTTTTTCAATTGTTTGACGGGTATTTCCGGTTGTATCACC +
Preference number: 6 (lower is better)
Translates to: RRSSRWYRSLLLGTV*RFFNCLTGISGCIT
Trigger: GGTGATACAACCGGAAATACCCGTCAAACAATTGAAAAACCTCAACACTGTACCGAGCAGCAAGCTCCTGTACCACCGACTGGATCTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 90 bp TATGTAACGGCGGACAATGTACGTGTTCAGGCTGCTCATTTCCATTaGTGTCATCCATTCATCTGTGACGTGGCTGGTCGCCATTACTTC +
Preference number: 6 (lower is better)
Translates to: YVTADNVRVQAAHFH*CHPFICDVAGRHYF
Trigger: GAAGTAATGGCGACCAGCCACGTCACAGATGAATGGATGACACAAATGGAAATGAGCAGCCTGAACACGTACATTGTCCGCCGTTACATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 90 bp ACTGTCCGGTCACTGAAGCTGTTACACAAGTTCTTCTTCACAAAGTaGGGATGGTTCAGGATATCATTTGCTACCAGGGGCTCCTTGTGG +
Preference number: 6 (lower is better)
Translates to: TVRSLKLLHKFFFTK*GWFRISFATRGSLW
Trigger: CCACAAGGAGCCCCTGGTAGCAAATGATATCCTGAACCATCCCAACTTTGTGAAGAAGAACTTGTGTAACAGCTTCAGTGACCGGACAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS TCA 72 bp ATGAACCGGGTGTTGCTGATGATGCCTCTGTCTTCATaGCTGTCATCGTCTCTTTCATCTCTGTCATTCTCC +
Preference number: 6 (lower is better)
Translates to: MNRVLLMMPLSS*LSSSLSSLSFS
Trigger: GGAGAATGACAGAGATGAAAGAGACGATGACAGTCATGAAGACAGAGGCATCATCAGCAACACCCGGTTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS GCA 72 bp CTTCTTCACAAAGTTGGGATGGTTCAGGATATCATTTaGTACCAGGGGCTCCTTGTGGGTAATGTGTTGCTG +
Preference number: 6 (lower is better)
Translates to: LLHKVGMVQDII*YQGLLVGNVLL
Trigger: CAGCAACACATTACCCACAAGGAGCCCCTGGTAGCAAATGATATCCTGAACCATCCCAACTTTGTGAAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 72 bp AAATGTGGACATTTTCCTTTTGGTCTCACTGGTGGCTaGAGACAGGTACGTCTTATAGCACTGGTCCAACGA +
Preference number: 6 (lower is better)
Translates to: KCGHFPFGLTGG*RQVRLIALVQR
Trigger: TCGTTGGACCAGTGCTATAAGACGTACCTGTCTCCAGCCACCAGTGAGACCAAAAGGAAAATGTCCACATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 90 bp GTAGTAGAGAGTCGATCGCAACTCACTGTTCTTGATACATTGGTGTaGAAGTTCCCATCAAACTCCATCATGGAAGGCGGAATTGTGCAG +
Preference number: 6 (lower is better)
Translates to: VVESRSQLTVLDTLV*KFPSNSIMEGGIVQ
Trigger: CTGCACAATTCCGCCTTCCATGATGGAGTTTGATGGGAACTTCAACACCAATGTATCAAGAACAGTGAGTTGCGATCGACTCTCTACTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS TCA 72 bp GTCGATCGCAACTCACTGTTCTTGATACATTGGTGTTaGAGTTCCCATCAAACTCCATCATGGAAGGCGGAA +
Preference number: 6 (lower is better)
Translates to: VDRNSLFLIHWC*SSHQTPSWKAE
Trigger: TTCCGCCTTCCATGATGGAGTTTGATGGGAACTTCAACACCAATGTATCAAGAACAGTGAGTTGCGATCGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp AGTCGATCGCAACTCACTGTTCTTGATACATTGGTGTaGAAGTTCCCATCAAACTCCATCATGGAAGGCGGA +
Preference number: 6 (lower is better)
Translates to: SRSQLTVLDTLV*KFPSNSIMEGG
Trigger: TCCGCCTTCCATGATGGAGTTTGATGGGAACTTCAACACCAATGTATCAAGAACAGTGAGTTGCGATCGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 90 bp TTCACGGTAGTAGAGAGTCGATCGCAACTCACTGTTCTTGATACATaGGTGTTGAAGTTCCCATCAAACTCCATCATGGAAGGCGGAATT +
Preference number: 6 (lower is better)
Translates to: FTVVESRSQLTVLDT*VLKFPSNSIMEGGI
Trigger: AATTCCGCCTTCCATGATGGAGTTTGATGGGAACTTCAACACCAATGTATCAAGAACAGTGAGTTGCGATCGACTCTCTACTACCGTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 90 bp GGGAAGACGGTGAAAATCCCTTCTTCTGAGCTGAAATATTGCCACTaGATTCCAGGGTTAGATTTCAGGTTGTCTGCGAGAACCGAATTT +
Preference number: 6 (lower is better)
Translates to: GKTVKIPSSELKYCH*IPGLDFRLSARTEF
Trigger: AAATTCGGTTCTCGCAGACAACCTGAAATCTAACCCTGGAATCAAGTGGCAATATTTCAGCTCAGAAGAAGGGATTTTCACCGTCTTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 90 bp GTGGTACAGGAGCTTGCTGCTCGGTACAGTGTTGAGGTTTTTCAATaGTTTGACGGGTATTTCCGGTTGTATCACCACAATACACAGAAT +
Preference number: 6 (lower is better)
Translates to: VVQELAARYSVEVFQ*FDGYFRLYHHNTQN
Trigger: ATTCTGTGTATTGTGGTGATACAACCGGAAATACCCGTCAAACAATTGAAAAACCTCAACACTGTACCGAGCAGCAAGCTCCTGTACCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp AAATATTGCCACTTGATTCCAGGGTTAGATTTCAGGTaGTCTGCGAGAACCGAATTTAAGTCTCGTCCTGGG +
Preference number: 6 (lower is better)
Translates to: KYCHLIPGLDFR*SARTEFKSRPG
Trigger: CCCAGGACGAGACTTAAATTCGGTTCTCGCAGACAACCTGAAATCTAACCCTGGAATCAAGTGGCAATATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp GAGCTTGCTGCTCGGTACAGTGTTGAGGTTTTTCAATaGTTTGACGGGTATTTCCGGTTGTATCACCACAAT +
Preference number: 6 (lower is better)
Translates to: ELAARYSVEVFQ*FDGYFRLYHHN
Trigger: ATTGTGGTGATACAACCGGAAATACCCGTCAAACAATTGAAAAACCTCAACACTGTACCGAGCAGCAAGCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp TCACTGAAGCTGTTACACAAGTTCTTCTTCACAAAGTaGGGATGGTTCAGGATATCATTTGCTACCAGGGGC +
Preference number: 6 (lower is better)
Translates to: SLKLLHKFFFTK*GWFRISFATRG
Trigger: GCCCCTGGTAGCAAATGATATCCTGAACCATCCCAACTTTGTGAAGAAGAACTTGTGTAACAGCTTCAGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 90 bp TACAGGAGCTTGCTGCTCGGTACAGTGTTGAGGTTTTTCAATTGTTaGACGGGTATTTCCGGTTGTATCACCACAATACACAGAATGAAG +
Preference number: 6 (lower is better)
Translates to: YRSLLLGTVLRFFNC*TGISGCITTIHRMK
Trigger: CTTCATTCTGTGTATTGTGGTGATACAACCGGAAATACCCGTCAAACAATTGAAAAACCTCAACACTGTACCGAGCAGCAAGCTCCTGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp GTGAAAATCCCTTCTTCTGAGCTGAAATATTGCCACTaGATTCCAGGGTTAGATTTCAGGTTGTCTGCGAGA +
Preference number: 6 (lower is better)
Translates to: VKIPSSELKYCH*IPGLDFRLSAR
Trigger: TCTCGCAGACAACCTGAAATCTAACCCTGGAATCAAGTGGCAATATTTCAGCTCAGAAGAAGGGATTTTCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp ATCATTACGGAGTTGTTCAGAAAGCCATTTTCTTCGTaGATGACGCGGAGAGTCGCCTTTTTATCTTCTTCC +
Preference number: 6 (lower is better)
Translates to: IITELFRKPFSS*MTRRVAFLSSS
Trigger: GGAAGAAGATAAAAAGGCGACTCTCCGCGTCATCAACGAAGAAAATGGCTTTCTGAACAACTCCGTAATGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp TTGCTGCTCGGTACAGTGTTGAGGTTTTTCAATTGTTaGACGGGTATTTCCGGTTGTATCACCACAATACAC +
Preference number: 6 (lower is better)
Translates to: LLLGTVLRFFNC*TGISGCITTIH
Trigger: GTGTATTGTGGTGATACAACCGGAAATACCCGTCAAACAATTGAAAAACCTCAACACTGTACCGAGCAGCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 90 bp CGGTACAGTGTTGAGGTTTTTCAATTGTTTGACGGGTATTTCCGGTaGTATCACCACAATACACAGAATGAAGGAAGTGTCCTGTACCAT +
Preference number: 6 (lower is better)
Translates to: RYSVEVFQLFDGYFR*YHHNTQNEGSVLYH
Trigger: ATGGTACAGGACACTTCCTTCATTCTGTGTATTGTGGTGATACAACCGGAAATACCCGTCAAACAATTGAAAAACCTCAACACTGTACCG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS GCA 72 bp AAGACGGTGAAAATCCCTTCTTCTGAGCTGAAATATTaGCACTTGATTCCAGGGTTAGATTTCAGGTTGTCT +
Preference number: 6 (lower is better)
Translates to: KTVKIPSSELKY*HLIPGLDFRLS
Trigger: AGACAACCTGAAATCTAACCCTGGAATCAAGTGGCAATATTTCAGCTCAGAAGAAGGGATTTTCACCGTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CCA 72 bp TCCATTATGAAGCACCTTATTTTGTTGCCACCATCTTaGTTACAAACTGGTAAGAGGTCCATCAGAACCTTG +
Preference number: 6 (lower is better)
Translates to: SIMKHLILLPPS*LQTGKRSIRTL
Trigger: CAAGGTTCTGATGGACCTCTTACCAGTTTGTAACCAAGATGGTGGCAACAAAATAAGGTGCTTCATAATGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3
CDS CAA 72 bp GTTGAGGTTTTTCAATTGTTTGACGGGTATTTCCGGTaGTATCACCACAATACACAGAATGAAGGAAGTGTC +
Preference number: 6 (lower is better)
Translates to: VEVFQLFDGYFR*YHHNTQNEGSV
Trigger: GACACTTCCTTCATTCTGTGTATTGTGGTGATACAACCGGAAATACCCGTCAAACAATTGAAAAACCTCAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000030257.15
ENSMUST00000097955.3