Pregenerated sensors for CABP4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024842Ensembl transcript IDs: ENSMUST00000025761.8
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTCATTTTTCAAAAACAACCCTTTATACAAACAAGTAGTGGGAAGTaGTCTAGCTACTCTCTCAATTCATCATGTCCTAGGAATTCCCCC | + |
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Preference number: 1 (lower is better) Translates to: FIFQKQPFIQTSSGK*SSYSLNSSCPRNSP Trigger: GGGGGAATTCCTAGGACATGATGAATTGAGAGAGTAGCTAGATCACTTCCCACTACTTGTTTGTATAAAGGGTTGTTTTTGAAAAATGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| 3UTR-3UTR CCA 90 bp | GGGTGTGAACAGGGCATTAGCCTACCAAAGAGCAACTTTGTGAAGTTGGTTCTCTGTCTGCTGGTGTCTTaGCCTCCAGGGCCAGTAGGT | + |
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Preference number: 2 (lower is better) Translates to: GCEQGISLPKSNFVKLVLCLLVS*PPGPVG Trigger: ACCTACTGGCCCTGGAGGCCAAGACACCAGCAGACA...GAGAACCAACTTCACAAAGTTGCTCTTTGGTAGGCTAATGCCCTGTTCACACCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| 3UTR CAA 90 bp | TCATCATGTCCTAGGAATTCCCCCAATGCACTATGCCTCATTCATTaGAATGCAGCCAGTTGTGGGGAACTCCCTACCTCTCCAGGATCT | + |
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Preference number: 2 (lower is better) Translates to: SSCPRNSPNALCLIH*NAASCGELPTSPGS Trigger: AGATCCTGGAGAGGTAGGGAGTTCCCCACAACTGGCTGCATTCAAATGAATGAGGCATAGTGCATTGGGGGAATTCCTAGGACATGATGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| 3UTR-3UTR CCA 90 bp | GTGAAGTTGGTTCTCTCATTCCACCACACAAACTTCAGGGATCAAATTCAGGCTTCCACAGCTTGGGGATaGGAGAAGACAGCACAGGCA | + |
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Preference number: 2 (lower is better) Translates to: VKLVLSFHHTNFRDQIQASTAWG*EKTAQA Trigger: TGCCTGTGCTGTCTTCTCCCATCCCCAAGCTGTGGA...AGCCTGAATTTGATCCCTGAAGTTTGTGTGGTGGAATGAGAGAACCAACTTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| 3UTR-3UTR TCA 90 bp | GGTTCTCTCATTCCACCACACAAACTTCAGGGATCAAATTCAGGCTTAGTGGCATATGCCTCATTCATTTaGATGCAGCCAGTTGTGGGG | + |
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Preference number: 2 (lower is better) Translates to: GSLIPPHKLQGSNSGLVAYASFI*MQPVVG Trigger: CCCCACAACTGGCTGCATTCAAATGAATGAGGCATA...TGCCACTAAGCCTGAATTTGATCCCTGAAGTTTGTGTGGTGGAATGAGAGAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| 3UTR CCA 72 bp | GGGGATTTCTCCATGCTGGGGAAGGGTGTGGTAGTCTaGTGTCTGCTGGTGTCTTGGCCTCCAGGGCCAGTA | + |
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Preference number: 3 (lower is better) Translates to: GDFSMLGKGVVV*CLLVSWPPGPV Trigger: TACTGGCCCTGGAGGCCAAGACACCAGCAGACACCAGACTACCACACCCTTCCCCAGCATGGAGAAATCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| 3UTR GCA 72 bp | GAATTCCCCCAATGCACTATGCCTCATTCATTTGAATaGAGCCAGTTGTGGGGAACTCCCTACCTCTCCAGG | + |
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Preference number: 3 (lower is better) Translates to: EFPQCTMPHSFE*SQLWGTPYLSR Trigger: CCTGGAGAGGTAGGGAGTTCCCCACAACTGGCTGCATTCAAATGAATGAGGCATAGTGCATTGGGGGAATTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| 3UTR TCA 72 bp | CTAGGAATTCCCCCAATGCACTATGCCTCATTCATTTaGATGCAGCCAGTTGTGGGGAACTCCCTACCTCTC | + |
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Preference number: 3 (lower is better) Translates to: LGIPPMHYASFI*MQPVVGNSLPL Trigger: GAGAGGTAGGGAGTTCCCCACAACTGGCTGCATTCAAATGAATGAGGCATAGTGCATTGGGGGAATTCCTAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| 3UTR-3UTR CAA 90 bp | CAGGATCTAAAGAGATTCAAATCATGTTCTCCAGTGAAAACTGTAACCAGCTTCTTTTCTCTCCACAGCTaGGGGATGGGAGAAGACAGC | + |
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Preference number: 3 (lower is better) Translates to: QDLKRFKSCSPVKTVTSFFSLHS*GMGEDS Trigger: GCTGTCTTCTCCCATCCCCAAGCTGTGGAGAGAAAA...GAAGCTGGTTACAGTTTTCACTGGAGAACATGATTTGAATCTCTTTAGATCCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| 3UTR GCA 72 bp | AATTCATCATGTCCTAGGAATTCCCCCAATGCACTATaGCTCATTCATTTGAATGCAGCCAGTTGTGGGGAA | + |
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Preference number: 3 (lower is better) Translates to: NSSCPRNSPNAL*LIHLNAASCGE Trigger: TTCCCCACAACTGGCTGCATTCAAATGAATGAGGCATAGTGCATTGGGGGAATTCCTAGGACATGATGAATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| 3UTR-3UTR CAA 90 bp | TCAGGGATCAAATTCAGGCTTAGTGGCATAAACTTTTACCTACAAAGTCATTACTTTGAATGCAGCCAGTaGTGGGGAACTCCCTACCTC | + |
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Preference number: 3 (lower is better) Translates to: SGIKFRLSGINFYLQSHYFECSQ*WGTPYL Trigger: GAGGTAGGGAGTTCCCCACAACTGGCTGCATTCAAA...GTAATGACTTTGTAGGTAAAAGTTTATGCCACTAAGCCTGAATTTGATCCCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR GCA 90 bp | GGTGTGGTAGTCTGGTGTCTGCTGGTGTCTTGGCCTCCAGGGCCAGTAGGTTGTCAGCAGAGCTGGTGCTaGCTGCCGCAGCTCCGCCAC | + |
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Preference number: 4 (lower is better) Translates to: GVVVWCLLVSWPPGPVGCQQSWC*LPQLRH Trigger: GTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTG...ACAACCTACTGGCCCTGGAGGCCAAGACACCAGCAGACACCAGACTACCACACC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR TCA 90 bp | GGTGTGGTAGTCTGGTGTCTGCTGGTGTCTTGGCCTCCAGGGCCAGTAGGTTGTGCAGCTCCGCCACCGTaGTCCGTCCATCCCTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: GVVVWCLLVSWPPGPVGCAAPPP*SVHPCP Trigger: AGGACAGGGATGGACGGATCACGGTGGCGGAGCTGC...ACAACCTACTGGCCCTGGAGGCCAAGACACCAGCAGACACCAGACTACCACACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR GCA 90 bp | AAGACAGCACAGGCAGACTCTGGAGTTGGGTGTGGTGAGGGGGTGAACCAGCCTAGCCCAGCGTCCGCATaGAGTCACCTAGCTCGCGGT | + |
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Preference number: 4 (lower is better) Translates to: KTAQADSGVGCGEGVNQPSPASA*SHLARG Trigger: ACCGCGAGCTAGGTGACTGCATGCGGACGCTGGGCT...AGGCTGGTTCACCCCCTCACCACACCCAACTCCAGAGTCTGCCTGTGCTGTCTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| 3UTR CAA 72 bp | GGGGAAGGGTGTGGTAGTCTGGTGTCTGCTGGTGTCTaGGCCTCCAGGGCCAGTAGGTTGTCCCTGAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: GEGCGSLVSAGV*ASRASRLSLKV Trigger: CACCTTCAGGGACAACCTACTGGCCCTGGAGGCCAAGACACCAGCAGACACCAGACTACCACACCCTTCCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR GCA 90 bp | CCCCAATGCACTATGCCTCATTCATTTGAATGCAGCCAGTTGTGGGGAACTCCCAGAGCTGGTGCTGCCTaGCGCAGCTCCGCCACCGTG | + |
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Preference number: 4 (lower is better) Translates to: PQCTMPHSFECSQLWGTPRAGAA*RSSATV Trigger: CACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCT...GGGAGTTCCCCACAACTGGCTGCATTCAAATGAATGAGGCATAGTGCATTGGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR CCA 90 bp | TGGGAGAAGACAGCACAGGCAGACTCTGGAGTTGGGTGTGGTGAGGGGGTGAACTCTTGCTCCTTCTCCTaGTCAAGGCAGGGCCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: WEKTAQADSGVGCGEGVNSCSFS*SRQGPQ Trigger: CTGAGGGCCCTGCCTTGACCAGGAGAAGGAGCAAGA...GTTCACCCCCTCACCACACCCAACTCCAGAGTCTGCCTGTGCTGTCTTCTCCCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR GCA 90 bp | TGGGAGAAGACAGCACAGGCAGACTCTGGAGTTGGGTGTGGTGAGGGGGTGAACGCCAACTCTCCTTCTTaGTCCTTCTCCTGGTCAAGG | + |
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Preference number: 4 (lower is better) Translates to: WEKTAQADSGVGCGEGVNANSPS*SFSWSR Trigger: CCTTGACCAGGAGAAGGAGCAAGAAGGAGAGTTGGC...GTTCACCCCCTCACCACACCCAACTCCAGAGTCTGCCTGTGCTGTCTTCTCCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR TCA 90 bp | CTATGCCTCATTCATTTGAATGCAGCCAGTTGTGGGGAACTCCCTACCTCTCCAGTGCTTGCTGCTTCCTaGGGCCTCAGAGCCCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: LCLIHLNAASCGELPTSPVLAAS*GLRALA Trigger: AGCCAGGGCTCTGAGGCCTCAGGAAGCAGCAAGCAC...TGGAGAGGTAGGGAGTTCCCCACAACTGGCTGCATTCAAATGAATGAGGCATAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR CCA 90 bp | CCCCAATGCACTATGCCTCATTCATTTGAATGCAGCCAGTTGTGGGGAACTCCCTGGGCAGCATCCTGCTaGGGGTCAGAACGGTGTCGA | + |
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Preference number: 4 (lower is better) Translates to: PQCTMPHSFECSQLWGTPWAASC*GSERCR Trigger: TCGACACCGTTCTGACCCCCAGCAGGATGCTGCCCA...GGGAGTTCCCCACAACTGGCTGCATTCAAATGAATGAGGCATAGTGCATTGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR CCA 90 bp | CCCCAATGCACTATGCCTCATTCATTTGAATGCAGCCAGTTGTGGGGAACTCCCACTGGTCCCCAGAACTaGCTTTCTGGGACCCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: PQCTMPHSFECSQLWGTPTGPQN*LSGTLG Trigger: ACCCAGGGTCCCAGAAAGCCAGTTCTGGGGACCAGT...GGGAGTTCCCCACAACTGGCTGCATTCAAATGAATGAGGCATAGTGCATTGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR CCA 90 bp | GGTTCTCTCATTCCACCACACAAACTTCAGGGATCAAATTCAGGCTTAGTGGCATTCCCCCAGCAGAGCTaGTGCTGCCTGCCGCAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: GSLIPPHKLQGSNSGLVAFPQQS*CCLPQL Trigger: GAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAA...TGCCACTAAGCCTGAATTTGATCCCTGAAGTTTGTGTGGTGGAATGAGAGAACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR CCA 90 bp | CTATGCCTCATTCATTTGAATGCAGCCAGTTGTGGGGAACTCCCTACCTCTCCACCAGAACTGGCTTTCTaGGACCCTGGGTGCCAACTC | + |
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Preference number: 4 (lower is better) Translates to: LCLIHLNAASCGELPTSPPELAF*DPGCQL Trigger: GAGTTGGCACCCAGGGTCCCAGAAAGCCAGTTCTGG...TGGAGAGGTAGGGAGTTCCCCACAACTGGCTGCATTCAAATGAATGAGGCATAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR GCA 90 bp | ACCACACAAACTTCAGGGATCAAATTCAGGCTTAGTGGCATAAACTTTTACCTACCCCAGCAGAGCTGGTaGTGCCTGCCGCAGCTCCGC | + |
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Preference number: 4 (lower is better) Translates to: TTQTSGIKFRLSGINFYLPQQSW*CLPQLR Trigger: GCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGG...TAGGTAAAAGTTTATGCCACTAAGCCTGAATTTGATCCCTGAAGTTTGTGTGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR GCA 90 bp | GTGAAGTTGGTTCTCTCATTCCACCACACAAACTTCAGGGATCAAATTCAGGCTACTCTCGGAAGGCGATaGGTAGCTCCCGAACGCCCA | + |
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Preference number: 4 (lower is better) Translates to: VKLVLSFHHTNFRDQIQATLGRR*VAPERP Trigger: TGGGCGTTCGGGAGCTACGCATCGCCTTCCGAGAGT...AGCCTGAATTTGATCCCTGAAGTTTGTGTGGTGGAATGAGAGAACCAACTTCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR TCA 90 bp | GGGTGTGAACAGGGCATTAGCCTACCAAAGAGCAACTTTGTGAAGTTGGTTCTCTGGTGCCATCCCCATTaGGGTCCATTTCTCGCAACA | + |
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Preference number: 4 (lower is better) Translates to: GCEQGISLPKSNFVKLVLWCHPH*GPFLAT Trigger: TGTTGCGAGAAATGGACCTCAATGGGGATGGCACCA...GAGAACCAACTTCACAAAGTTGCTCTTTGGTAGGCTAATGCCCTGTTCACACCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| 3UTR CAA 72 bp | CCTAGGAATTCCCCCAATGCACTATGCCTCATTCATTaGAATGCAGCCAGTTGTGGGGAACTCCCTACCTCT | + |
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Preference number: 4 (lower is better) Translates to: PRNSPNALCLIH*NAASCGELPTS Trigger: AGAGGTAGGGAGTTCCCCACAACTGGCTGCATTCAAATGAATGAGGCATAGTGCATTGGGGGAATTCCTAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR TCA 90 bp | ACCACACAAACTTCAGGGATCAAATTCAGGCTTAGTGGCATAAACTTTTACCTACGAACGCCCAGCATGTaGGCTGTCTCCTCCCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: TTQTSGIKFRLSGINFYLRTPSM*AVSSLS Trigger: GCTGAGGGAGGAGACAGCTCACATGCTGGGCGTTCG...TAGGTAAAAGTTTATGCCACTAAGCCTGAATTTGATCCCTGAAGTTTGTGTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR CCA 90 bp | TCAGGGATCAAATTCAGGCTTAGTGGCATAAACTTTTACCTACAAAGTCATTACGGTGAGACGCTGGCCTaGCGGGGGCTGAGGATGGTT | + |
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Preference number: 4 (lower is better) Translates to: SGIKFRLSGINFYLQSHYGETLA*RGLRMV Trigger: AACCATCCTCAGCCCCCGCCAGGCCAGCGTCTCACC...GTAATGACTTTGTAGGTAAAAGTTTATGCCACTAAGCCTGAATTTGATCCCTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR GCA 90 bp | ACCACACAAACTTCAGGGATCAAATTCAGGCTTAGTGGCATAAACTTTTACCTACTTTGGGCAGCATCCTaGTGGGGGTCAGAACGGTGT | + |
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Preference number: 4 (lower is better) Translates to: TTQTSGIKFRLSGINFYLLWAAS*WGSERC Trigger: ACACCGTTCTGACCCCCAGCAGGATGCTGCCCAAAG...TAGGTAAAAGTTTATGCCACTAAGCCTGAATTTGATCCCTGAAGTTTGTGTGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR GCA 90 bp | ATTAGCCTACCAAAGAGCAACTTTGTGAAGTTGGTTCTCTCATTCCACCACACATCTCATCCAGTTCAGTaGCCTCTAGTGGTTCCCCCA | + |
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Preference number: 4 (lower is better) Translates to: ISLPKSNFVKLVLSFHHTSHPVQ*PLVVPP Trigger: TGGGGGAACCACTAGAGGGCACTGAACTGGATGAGA...TGTGTGGTGGAATGAGAGAACCAACTTCACAAAGTTGCTCTTTGGTAGGCTAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR GCA 90 bp | TCAGGGATCAAATTCAGGCTTAGTGGCATAAACTTTTACCTACAAAGTCATTACGAGGATGGTTCCTCCTaGCCCACTTTGGTCCTTGGG | + |
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Preference number: 4 (lower is better) Translates to: SGIKFRLSGINFYLQSHYEDGSS*PTLVLG Trigger: CCCAAGGACCAAAGTGGGGCAGGAGGAACCATCCTC...GTAATGACTTTGTAGGTAAAAGTTTATGCCACTAAGCCTGAATTTGATCCCTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| 3UTR CAA 72 bp | CAGGGCATTAGCCTACCAAAGAGCAACTTTGTGAAGTaGGTTCTCTCATTCCACCACACAAACTTCAGGGAT | + |
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Preference number: 4 (lower is better) Translates to: QGISLPKSNFVK*VLSFHHTNFRD Trigger: ATCCCTGAAGTTTGTGTGGTGGAATGAGAGAACCAACTTCACAAAGTTGCTCTTTGGTAGGCTAATGCCCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS TCA 90 bp | GTTCCCCCAGCAGAGCTGGTGCTGCCTGCCGCAGCTCCGCCACCGTaGTCCGTCCATCCCTGTCCTTGTCAAACTCTCGGAAGGCGATGC | + |
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Preference number: 5 (lower is better) Translates to: VPPAELVLPAAAPPP*SVHPCPCQTLGRRC Trigger: GCATCGCCTTCCGAGAGTTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS GCA 90 bp | AGTTCAGTGCCCTCTAGTGGTTCCCCCAGCAGAGCTGGTGCTGCCTaGCGCAGCTCCGCCACCGTGATCCGTCCATCCCTGTCCTTGTCA | + |
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Preference number: 5 (lower is better) Translates to: SSVPSSGSPSRAGAA*RSSATVIRPSLSLS Trigger: TGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGGCACTGAACT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS CCA 90 bp | CTTTCTGGGACCCTGGGTGCCAACTCTCCTTCTTGCTCCTTCTCCTaGTCAAGGCAGGGCCCTCAGCAGCACTCCTGGGAGATACAACTC | + |
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Preference number: 5 (lower is better) Translates to: LSGTLGANSPSCSFS*SRQGPQQHSWEIQL Trigger: GAGTTGTATCTCCCAGGAGTGCTGCTGAGGGCCCTGCCTTGACCAGGAGAAGGAGCAAGAAGGAGAGTTGGCACCCAGGGTCCCAGAAAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR CAA 90 bp | AAGGGGGATTTCTCCATGCTGGGGAAGGGTGTGGTAGTCTGGTGTCTGCTGGTGTCTCCTCCCTCAGCTTaGGGCTTATCAGCTCCACAA | + |
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Preference number: 5 (lower is better) Translates to: KGDFSMLGKGVVVWCLLVSPPSA*GLSAPQ Trigger: TTGTGGAGCTGATAAGCCCAAAGCTGAGGGAGGAGA...CACCAGCAGACACCAGACTACCACACCCTTCCCCAGCATGGAGAAATCCCCCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR CAA 90 bp | CCCCAATGCACTATGCCTCATTCATTTGAATGCAGCCAGTTGTGGGGAACTCCCCGTCCATCCCTGTCCTaGTCAAACTCTCGGAAGGCG | + |
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Preference number: 5 (lower is better) Translates to: PQCTMPHSFECSQLWGTPRPSLS*SNSRKA Trigger: CGCCTTCCGAGAGTTTGACAAGGACAGGGATGGACG...GGGAGTTCCCCACAACTGGCTGCATTCAAATGAATGAGGCATAGTGCATTGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR CAA 90 bp | CCCCAATGCACTATGCCTCATTCATTTGAATGCAGCCAGTTGTGGGGAACTCCCTGCCAACTCTCCTTCTaGCTCCTTCTCCTGGTCAAG | + |
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Preference number: 5 (lower is better) Translates to: PQCTMPHSFECSQLWGTPCQLSF*LLLLVK Trigger: CTTGACCAGGAGAAGGAGCAAGAAGGAGAGTTGGCA...GGGAGTTCCCCACAACTGGCTGCATTCAAATGAATGAGGCATAGTGCATTGGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS-3UTR CAA 90 bp | GTGAAGTTGGTTCTCTCATTCCACCACACAAACTTCAGGGATCAAATTCAGGCTATGGTGCCATCCCCATaGAGGTCCATTTCTCGCAAC | + |
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Preference number: 5 (lower is better) Translates to: VKLVLSFHHTNFRDQIQAMVPSP*RSISRN Trigger: GTTGCGAGAAATGGACCTCAATGGGGATGGCACCAT...AGCCTGAATTTGATCCCTGAAGTTTGTGTGGTGGAATGAGAGAACCAACTTCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS TCA 90 bp | ATAGCATCATTACAAACTCGTCAAAGTCTATGGTGCCATCCCCATTaGGGTCCATTTCTCGCAACATCTCATCCAGTTCAGTGCCCTCTA | + |
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Preference number: 5 (lower is better) Translates to: IASLQTRQSLWCHPH*GPFLATSHPVQCPL Trigger: TAGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGACTTTGACGAGTTTGTAATGATGCTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS GCA 72 bp | CCCTCTAGTGGTTCCCCCAGCAGAGCTGGTGCTGCCTaGCGCAGCTCCGCCACCGTGATCCGTCCATCCCTG | + |
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Preference number: 6 (lower is better) Translates to: PSSGSPSRAGAA*RSSATVIRPSL Trigger: CAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGCTGGGGGAACCACTAGAGGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS TCA 72 bp | ATGGGAGTGTCGGTGAGACGCTGGCCTGGCGGGGGCTaGGGATGGTTCCTCCTGCCCCACTTTGGTCCTTGG | + |
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Preference number: 6 (lower is better) Translates to: MGVSVRRWPGGG*GWFLLPHFGPW Trigger: CCAAGGACCAAAGTGGGGCAGGAGGAACCATCCTCAGCCCCCGCCAGGCCAGCGTCTCACCGACACTCCCAT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS CCA 72 bp | AACGGTGTCGATGGGAGTGTCGGTGAGACGCTGGCCTaGCGGGGGCTGAGGATGGTTCCTCCTGCCCCACTT | + |
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Preference number: 6 (lower is better) Translates to: NGVDGSVGETLA*RGLRMVPPAPL Trigger: AAGTGGGGCAGGAGGAACCATCCTCAGCCCCCGCCAGGCCAGCGTCTCACCGACACTCCCATCGACACCGTT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS TCA 72 bp | GCAGAGCTGGTGCTGCCTGCCGCAGCTCCGCCACCGTaGTCCGTCCATCCCTGTCCTTGTCAAACTCTCGGA | + |
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Preference number: 6 (lower is better) Translates to: AELVLPAAAPPP*SVHPCPCQTLG Trigger: TCCGAGAGTTTGACAAGGACAGGGATGGACGGATCACGGTGGCGGAGCTGCGGCAGGCAGCACCAGCTCTGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS CCA 72 bp | ACCCTGGGTGCCAACTCTCCTTCTTGCTCCTTCTCCTaGTCAAGGCAGGGCCCTCAGCAGCACTCCTGGGAG | + |
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Preference number: 6 (lower is better) Translates to: TLGANSPSCSFS*SRQGPQQHSWE Trigger: CTCCCAGGAGTGCTGCTGAGGGCCCTGCCTTGACCAGGAGAAGGAGCAAGAAGGAGAGTTGGCACCCAGGGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS CAA 90 bp | TCCCCAGAACTGGCTTTCTGGGACCCTGGGTGCCAACTCTCCTTCTaGCTCCTTCTCCTGGTCAAGGCAGGGCCCTCAGCAGCACTCCTG | + |
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Preference number: 6 (lower is better) Translates to: SPELAFWDPGCQLSF*LLLLVKAGPSAALL Trigger: CAGGAGTGCTGCTGAGGGCCCTGCCTTGACCAGGAGAAGGAGCAAGAAGGAGAGTTGGCACCCAGGGTCCCAGAAAGCCAGTTCTGGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS CAA 72 bp | CTGGCTTTCTGGGACCCTGGGTGCCAACTCTCCTTCTaGCTCCTTCTCCTGGTCAAGGCAGGGCCCTCAGCA | + |
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Preference number: 6 (lower is better) Translates to: LAFWDPGCQLSF*LLLLVKAGPSA Trigger: TGCTGAGGGCCCTGCCTTGACCAGGAGAAGGAGCAAGAAGGAGAGTTGGCACCCAGGGTCCCAGAAAGCCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS CCA 72 bp | CCGTCCTGGTCAGTGTCAAACTCCTCAAAGGCAGCCTaGAGCTCCTCCAACTCCTCAGGGCCCAGTTCACGA | + |
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Preference number: 6 (lower is better) Translates to: PSWSVSNSSKAA*SSSNSSGPSSR Trigger: TCGTGAACTGGGCCCTGAGGAGTTGGAGGAGCTCCAGGCTGCCTTTGAGGAGTTTGACACTGACCAGGACGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS GCA 72 bp | GTCCATCCCTGTCCTTGTCAAACTCTCGGAAGGCGATaGGTAGCTCCCGAACGCCCAGCATGTGAGCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: VHPCPCQTLGRR*VAPERPACELS Trigger: AGACAGCTCACATGCTGGGCGTTCGGGAGCTACGCATCGCCTTCCGAGAGTTTGACAAGGACAGGGATGGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS GCA 72 bp | TCAAAATCCACAAAGCCTCCCATGCGCATCTTCACGTaGTGCGACACTTCTAGAAGCTCCATCTCCGTGGGC | + |
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Preference number: 6 (lower is better) Translates to: SKSTKPPMRIFT*CDTSRSSISVG Trigger: GCCCACGGAGATGGAGCTTCTAGAAGTGTCGCAGCACGTGAAGATGCGCATGGGAGGCTTTGTGGATTTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS CAA 90 bp | GATAGCATCATTACAAACTCGTCAAAGTCTATGGTGCCATCCCCATaGAGGTCCATTTCTCGCAACATCTCATCCAGTTCAGTGCCCTCT | + |
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Preference number: 6 (lower is better) Translates to: DSIITNSSKSMVPSP*RSISRNISSSSVPS Trigger: AGAGGGCACTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGACTTTGACGAGTTTGTAATGATGCTATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS TCA 72 bp | TTACAAACTCGTCAAAGTCTATGGTGCCATCCCCATTaGGGTCCATTTCTCGCAACATCTCATCCAGTTCAG | + |
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Preference number: 6 (lower is better) Translates to: LQTRQSLWCHPH*GPFLATSHPVQ Trigger: CTGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGACTTTGACGAGTTTGTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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| CDS CAA 72 bp | ATTACAAACTCGTCAAAGTCTATGGTGCCATCCCCATaGAGGTCCATTTCTCGCAACATCTCATCCAGTTCA | + |
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Preference number: 6 (lower is better) Translates to: ITNSSKSMVPSP*RSISRNISSSS Trigger: TGAACTGGATGAGATGTTGCGAGAAATGGACCTCAATGGGGATGGCACCATAGACTTTGACGAGTTTGTAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025761.8 |
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