Pregenerated sensors for CABP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024857Ensembl transcript IDs: ENSMUST00000159148.8, ENSMUST00000159556.8, ENSMUST00000159593.8, ENSMUST00000162908.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AACAAGCTTGGAGATGTTTTATTGCCAGAGAACCAGGACGAGGTATaGGGTGATGACAGGATAGGGCACTGTGCCCAGGCAGGGATGGGG | + |
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Preference number: 1 (lower is better) Translates to: NKLGDVLLPENQDEV*GDDRIGHCAQAGMG Trigger: CCCCATCCCTGCCTGGGCACAGTGCCCTATCCTGTCATCACCCCATACCTCGTCCTGGTTCTCTGGCAATAAAACATCTCCAAGCTTGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| 3UTR-3UTR CCA 90 bp | TTCCCAACAAGCTTGGAGATGTTTTATTGCCAGAGAACCAGGACGAGGTATGGGGTGCCCAGGCAGGGATaGGGAGGAGGCACACAGTCC | + |
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Preference number: 2 (lower is better) Translates to: FPTSLEMFYCQRTRTRYGVPRQG*GGGTQS Trigger: GGACTGTGTGCCTCCTCCCCATCCCTGCCTGGGCAC...CCCATACCTCGTCCTGGTTCTCTGGCAATAAAACATCTCCAAGCTTGTTGGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| 3UTR CCA 72 bp | GGAGATGTTTTATTGCCAGAGAACCAGGACGAGGTATaGGGTGATGACAGGATAGGGCACTGTGCCCAGGCA | + |
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Preference number: 3 (lower is better) Translates to: GDVLLPENQDEV*GDDRIGHCAQA Trigger: TGCCTGGGCACAGTGCCCTATCCTGTCATCACCCCATACCTCGTCCTGGTTCTCTGGCAATAAAACATCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS-3UTR CCA 90 bp | GAGGTATGGGGTGATGACAGGATAGGGCACTGTGCCCAGGCAGGGATGGGGAGGCCTGCTCCTCAGTTCTaGGACCAGGGCTGGGGCGGG | + |
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Preference number: 4 (lower is better) Translates to: EVWGDDRIGHCAQAGMGRPAPQF*DQGWGG Trigger: CCCGCCCCAGCCCTGGTCCCAGAACTGAGGAGCAGG...CCTCCCCATCCCTGCCTGGGCACAGTGCCCTATCCTGTCATCACCCCATACCTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000162908.2 |
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| CDS-3UTR GCA 90 bp | GAGGTATGGGGTGATGACAGGATAGGGCACTGTGCCCAGGCAGGGATGGGGAGGCTCCTTCAGGGAGGCTaGCATCTGTTGGGCCCTCCG | + |
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Preference number: 4 (lower is better) Translates to: EVWGDDRIGHCAQAGMGRLLQGG*HLLGPP Trigger: CGGAGGGCCCAACAGATGGCAGCCTCCCTGAAGGAG...CCTCCCCATCCCTGCCTGGGCACAGTGCCCTATCCTGTCATCACCCCATACCTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159148.8 |
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| CDS-3UTR CCA 90 bp | GAGGTATGGGGTGATGACAGGATAGGGCACTGTGCCCAGGCAGGGATGGGGAGGAGACCCCCGGTGCCATaGCGTCTTGGCACAGTTCCC | + |
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Preference number: 4 (lower is better) Translates to: EVWGDDRIGHCAQAGMGRRPPVP*RLGTVP Trigger: GGGAACTGTGCCAAGACGCCATGGCACCGGGGGTCT...CCTCCCCATCCCTGCCTGGGCACAGTGCCCTATCCTGTCATCACCCCATACCTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS-3UTR GCA 90 bp | GAGGTATGGGGTGATGACAGGATAGGGCACTGTGCCCAGGCAGGGATGGGGAGGGGCTGGGTCCTGCAGTaGCTGAGGATGGACTGGAGT | + |
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Preference number: 4 (lower is better) Translates to: EVWGDDRIGHCAQAGMGRGWVLQ*LRMDWS Trigger: ACTCCAGTCCATCCTCAGGCACTGCAGGACCCAGCC...CCTCCCCATCCCTGCCTGGGCACAGTGCCCTATCCTGTCATCACCCCATACCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000159148.8 |
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| CDS-3UTR CCA 90 bp | GAGGTATGGGGTGATGACAGGATAGGGCACTGTGCCCAGGCAGGGATGGGGAGGTGGCTAGGTCTTGGCTaGGTCCTGCAGTGCCTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: EVWGDDRIGHCAQAGMGRWLGLG*VLQCLR Trigger: CCTCAGGCACTGCAGGACCCAGCCAAGACCTAGCCA...CCTCCCCATCCCTGCCTGGGCACAGTGCCCTATCCTGTCATCACCCCATACCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159148.8 |
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| CDS-3UTR GCA 90 bp | TTGCCAGAGAACCAGGACGAGGTATGGGGTGATGACAGGATAGGGCACTGTGCCCTGGCCCCACCAGGCTaGCGAGCACTGAGTAGCCCT | + |
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Preference number: 4 (lower is better) Translates to: LPENQDEVWGDDRIGHCALAPPG*RALSSP Trigger: AGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAG...GGCACAGTGCCCTATCCTGTCATCACCCCATACCTCGTCCTGGTTCTCTGGCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162908.2 |
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| CDS-3UTR TCA 90 bp | TTGCCAGAGAACCAGGACGAGGTATGGGGTGATGACAGGATAGGGCACTGTGCCGGAGCTCCCCTACGCTaGTGCAGCCATCACCGTTGG | + |
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Preference number: 4 (lower is better) Translates to: LPENQDEVWGDDRIGHCAGAPLR*CSHHRW Trigger: CCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCC...GGCACAGTGCCCTATCCTGTCATCACCCCATACCTCGTCCTGGTTCTCTGGCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS-3UTR CCA 90 bp | TTGCCAGAGAACCAGGACGAGGTATGGGGTGATGACAGGATAGGGCACTGTGCCAGACCCCCGGTGCCATaGCGTCTTGGCACAGTTCCC | + |
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Preference number: 4 (lower is better) Translates to: LPENQDEVWGDDRIGHCARPPVP*RLGTVP Trigger: GGGAACTGTGCCAAGACGCCATGGCACCGGGGGTCT...GGCACAGTGCCCTATCCTGTCATCACCCCATACCTCGTCCTGGTTCTCTGGCAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS-3UTR GCA 90 bp | TTGCCAGAGAACCAGGACGAGGTATGGGGTGATGACAGGATAGGGCACTGTGCCTGGGTCGAAGGAAGATaGATGCTGGCCCCACCAGGC | + |
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Preference number: 4 (lower is better) Translates to: LPENQDEVWGDDRIGHCAWVEGR*MLAPPG Trigger: GCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCCA...GGCACAGTGCCCTATCCTGTCATCACCCCATACCTCGTCCTGGTTCTCTGGCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162908.2 |
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| CDS-3UTR CCA 90 bp | TTGCCAGAGAACCAGGACGAGGTATGGGGTGATGACAGGATAGGGCACTGTGCCGGTGCCATGGCGTCTTaGCACAGTTCCCCATGGGTC | + |
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Preference number: 4 (lower is better) Translates to: LPENQDEVWGDDRIGHCAGAMAS*HSSPWV Trigger: GACCCATGGGGAACTGTGCCAAGACGCCATGGCACC...GGCACAGTGCCCTATCCTGTCATCACCCCATACCTCGTCCTGGTTCTCTGGCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS-3UTR CCA 90 bp | TTGCCAGAGAACCAGGACGAGGTATGGGGTGATGACAGGATAGGGCACTGTGCCAAGGAAGATGCATGCTaGCCCCACCAGGCTGCCGAG | + |
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Preference number: 4 (lower is better) Translates to: LPENQDEVWGDDRIGHCAKEDAC*PHQAAE Trigger: CTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTT...GGCACAGTGCCCTATCCTGTCATCACCCCATACCTCGTCCTGGTTCTCTGGCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162908.2 |
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| CDS-3UTR TCA 90 bp | GAGGTATGGGGTGATGACAGGATAGGGCACTGTGCCCAGGCAGGGATGGGGAGGCCAGGCCATCTCCATTaGGGTCAATGTCTTGGAGTA | + |
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Preference number: 4 (lower is better) Translates to: EVWGDDRIGHCAQAGMGRPGHLH*GQCLGV Trigger: TACTCCAAGACATTGACCTCAATGGAGATGGCCTGG...CCTCCCCATCCCTGCCTGGGCACAGTGCCCTATCCTGTCATCACCCCATACCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS-3UTR GCA 90 bp | TTGCCAGAGAACCAGGACGAGGTATGGGGTGATGACAGGATAGGGCACTGTGCCCATGTCTGCCGTCTCTaGCAGCAGCTTGGGACCCAT | + |
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Preference number: 4 (lower is better) Translates to: LPENQDEVWGDDRIGHCAHVCRL*QQLGTH Trigger: ATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATG...GGCACAGTGCCCTATCCTGTCATCACCCCATACCTCGTCCTGGTTCTCTGGCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS-3UTR CCA 90 bp | GAGGTATGGGGTGATGACAGGATAGGGCACTGTGCCCAGGCAGGGATGGGGAGGCTCTTCGATCTCTTCTaGTCTCAGCTCTCGATCCTG | + |
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Preference number: 4 (lower is better) Translates to: EVWGDDRIGHCAQAGMGRLFDLF*SQLSIL Trigger: CAGGATCGAGAGCTGAGACCAGAAGAGATCGAAGAG...CCTCCCCATCCCTGCCTGGGCACAGTGCCCTATCCTGTCATCACCCCATACCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159148.8 |
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| CDS-3UTR CCA 90 bp | TTCCCAACAAGCTTGGAGATGTTTTATTGCCAGAGAACCAGGACGAGGTATGGGTTCTGGGACCAGGGCTaGGGCGGGAGCCCCCTAGGG | + |
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Preference number: 4 (lower is better) Translates to: FPTSLEMFYCQRTRTRYGFWDQG*GGSPLG Trigger: CCCTAGGGGGCTCCCGCCCCAGCCCTGGTCCCAGAA...CCCATACCTCGTCCTGGTTCTCTGGCAATAAAACATCTCCAAGCTTGTTGGGAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162908.2 |
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| CDS-3UTR TCA 90 bp | GGGATGGGGAGGAGGCACACAGTCCTGTACACAGTGACCTTCAAAGAACATATAGGAGCTCCCCTACGCTaGTGCAGCCATCACCGTTGG | + |
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Preference number: 4 (lower is better) Translates to: GMGRRHTVLYTVTFKEHIGAPLR*CSHHRW Trigger: CCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCC...TATATGTTCTTTGAAGGTCACTGTGTACAGGACTGTGTGCCTCCTCCCCATCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS-3UTR CCA 90 bp | GGGATGGGGAGGAGGCACACAGTCCTGTACACAGTGACCTTCAAAGAACATATAGGGCTGGCTAGGTCTTaGCTGGGTCCTGCAGTGCCT | + |
|
Preference number: 4 (lower is better) Translates to: GMGRRHTVLYTVTFKEHIGLARS*LGPAVP Trigger: AGGCACTGCAGGACCCAGCCAAGACCTAGCCAGCCC...TATATGTTCTTTGAAGGTCACTGTGTACAGGACTGTGTGCCTCCTCCCCATCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159148.8 |
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| CDS-3UTR TCA 90 bp | GAGGTATGGGGTGATGACAGGATAGGGCACTGTGCCCAGGCAGGGATGGGGAGGACCACTGATCTGTTGTaGTATCTCAATGAGCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: EVWGDDRIGHCAQAGMGRTTDLL*YLNELH Trigger: ATGGAGCTCATTGAGATATCACAACAGATCAGTGGT...CCTCCCCATCCCTGCCTGGGCACAGTGCCCTATCCTGTCATCACCCCATACCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS-3UTR TCA 90 bp | TTCCCAACAAGCTTGGAGATGTTTTATTGCCAGAGAACCAGGACGAGGTATGGGGGAGCTCCCCTACGCTaGTGCAGCCATCACCGTTGG | + |
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Preference number: 4 (lower is better) Translates to: FPTSLEMFYCQRTRTRYGGAPLR*CSHHRW Trigger: CCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCC...CCCATACCTCGTCCTGGTTCTCTGGCAATAAAACATCTCCAAGCTTGTTGGGAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS-3UTR GCA 90 bp | TTGCCAGAGAACCAGGACGAGGTATGGGGTGATGACAGGATAGGGCACTGTGCCTCCTGGAAGGCGATCTaGAGCTCTTCGATCTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: LPENQDEVWGDDRIGHCASWKAI*SSSISS Trigger: AGAAGAGATCGAAGAGCTGCAGATCGCCTTCCAGGA...GGCACAGTGCCCTATCCTGTCATCACCCCATACCTCGTCCTGGTTCTCTGGCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS-3UTR GCA 90 bp | TTCCCAACAAGCTTGGAGATGTTTTATTGCCAGAGAACCAGGACGAGGTATGGGCCCTGTGTCCCCTCCTaGTCCTCAGTTCTGGGACCA | + |
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Preference number: 4 (lower is better) Translates to: FPTSLEMFYCQRTRTRYGPCVPS*SSVLGP Trigger: TGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGG...CCCATACCTCGTCCTGGTTCTCTGGCAATAAAACATCTCCAAGCTTGTTGGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162908.2 |
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| CDS-3UTR CCA 90 bp | GAGGTATGGGGTGATGACAGGATAGGGCACTGTGCCCAGGCAGGGATGGGGAGGTTGAGGTCAATGTCTTaGAGTATCTCATCTACTTCC | + |
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Preference number: 4 (lower is better) Translates to: EVWGDDRIGHCAQAGMGRLRSMS*SISSTS Trigger: GGAAGTAGATGAGATACTCCAAGACATTGACCTCAA...CCTCCCCATCCCTGCCTGGGCACAGTGCCCTATCCTGTCATCACCCCATACCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS-3UTR TCA 90 bp | TTGCCAGAGAACCAGGACGAGGTATGGGGTGATGACAGGATAGGGCACTGTGCCACCACTGATCTGTTGTaGTATCTCAATGAGCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: LPENQDEVWGDDRIGHCATTDLL*YLNELH Trigger: ATGGAGCTCATTGAGATATCACAACAGATCAGTGGT...GGCACAGTGCCCTATCCTGTCATCACCCCATACCTCGTCCTGGTTCTCTGGCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS-3UTR TCA 90 bp | GGGATGGGGAGGAGGCACACAGTCCTGTACACAGTGACCTTCAAAGAACATATACCAGGCCATCTCCATTaGGGTCAATGTCTTGGAGTA | + |
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Preference number: 4 (lower is better) Translates to: GMGRRHTVLYTVTFKEHIPGHLH*GQCLGV Trigger: TACTCCAAGACATTGACCTCAATGGAGATGGCCTGG...TATATGTTCTTTGAAGGTCACTGTGTACAGGACTGTGTGCCTCCTCCCCATCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS-3UTR GCA 90 bp | GGGATGGGGAGGAGGCACACAGTCCTGTACACAGTGACCTTCAAAGAACATATATCCTGGAAGGCGATCTaGAGCTCTTCGATCTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: GMGRRHTVLYTVTFKEHISWKAI*SSSISS Trigger: AGAAGAGATCGAAGAGCTGCAGATCGCCTTCCAGGA...TATATGTTCTTTGAAGGTCACTGTGTACAGGACTGTGTGCCTCCTCCCCATCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS-3UTR CCA 90 bp | TTGCCAGAGAACCAGGACGAGGTATGGGGTGATGACAGGATAGGGCACTGTGCCTTGAGGTCAATGTCTTaGAGTATCTCATCTACTTCC | + |
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Preference number: 4 (lower is better) Translates to: LPENQDEVWGDDRIGHCALRSMS*SISSTS Trigger: GGAAGTAGATGAGATACTCCAAGACATTGACCTCAA...GGCACAGTGCCCTATCCTGTCATCACCCCATACCTCGTCCTGGTTCTCTGGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS-3UTR TCA 90 bp | TTCCCAACAAGCTTGGAGATGTTTTATTGCCAGAGAACCAGGACGAGGTATGGGCCAGGCCATCTCCATTaGGGTCAATGTCTTGGAGTA | + |
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Preference number: 4 (lower is better) Translates to: FPTSLEMFYCQRTRTRYGPGHLH*GQCLGV Trigger: TACTCCAAGACATTGACCTCAATGGAGATGGCCTGG...CCCATACCTCGTCCTGGTTCTCTGGCAATAAAACATCTCCAAGCTTGTTGGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS-3UTR CCA 90 bp | TTCCCAACAAGCTTGGAGATGTTTTATTGCCAGAGAACCAGGACGAGGTATGGGCTCTTCGATCTCTTCTaGTCTCAGCTCTCGATCCTT | + |
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Preference number: 4 (lower is better) Translates to: FPTSLEMFYCQRTRTRYGLFDLF*SQLSIL Trigger: AAGGATCGAGAGCTGAGACCAGAAGAGATCGAAGAG...CCCATACCTCGTCCTGGTTCTCTGGCAATAAAACATCTCCAAGCTTGTTGGGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159556.8 |
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| CDS TCA 90 bp | GGGTCGAAGGAAGATGCATGCTGGCCCCACCAGGCTGCCGAGCACTaGGTAGCCCTGTGTCCCCTCCTGCTCCTCAGTTCTGGGACCAGG | + |
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Preference number: 5 (lower is better) Translates to: GSKEDACWPHQAAEH*VALCPLLLLSSGTR Trigger: CCTGGTCCCAGAACTGAGGAGCAGGAGGGGACACAGGGCTACTCAGTGCTCGGCAGCCTGGTGGGGCCAGCATGCATCTTCCTTCGACCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000162908.2 |
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| CDS GCA 90 bp | TACTTCCCGTTGGCTGAGGCGTTCCCCCAGCAGAGCTTTGAGGGCTaGCCGGAGCTCCCCTACGCTGATGCAGCCATCACCGTTGGTGTC | + |
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Preference number: 5 (lower is better) Translates to: YFPLAEAFPQQSFEG*PELPYADAAITVGV Trigger: GACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAACGGGAAGTA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS-3UTR CAA 90 bp | GAGGTATGGGGTGATGACAGGATAGGGCACTGTGCCCAGGCAGGGATGGGGAGGCTCATCTACTTCCCGTaGGCTGAGGCGTTCCCCCAG | + |
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Preference number: 5 (lower is better) Translates to: EVWGDDRIGHCAQAGMGRLIYFP*AEAFPQ Trigger: CTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAG...CCTCCCCATCCCTGCCTGGGCACAGTGCCCTATCCTGTCATCACCCCATACCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS CCA 90 bp | TCACGGAGAAGGGCCCTTCTGCGAGTAGTGGGGCTGGCTAGGTCTTaGCTGGGTCCTGCAGTGCCTGAGGATGGACTGGAGTCTCCTTCA | + |
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Preference number: 5 (lower is better) Translates to: SRRRALLRVVGLARS*LGPAVPEDGLESPS Trigger: TGAAGGAGACTCCAGTCCATCCTCAGGCACTGCAGGACCCAGCCAAGACCTAGCCAGCCCCACTACTCGCAGAAGGGCCCTTCTCCGTGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159148.8 ENSMUST00000159593.8 |
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| CDS CCA 90 bp | ATCTGCAGCTCTTCGATCTCTTCTGGTCTCAGCTCTCGATCGAGCTaGGTAGCCGCGATGCTGGGTCGAAGGAAGATGCATGCTGGCCCC | + |
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Preference number: 5 (lower is better) Translates to: ICSSSISSGLSSRSS*VAAMLGRRKMHAGP Trigger: GGGGCCAGCATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAGAGCTGCAGAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162908.2 |
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| CDS-3UTR CAA 90 bp | GGGATGGGGAGGAGGCACACAGTCCTGTACACAGTGACCTTCAAAGAACATATAGGAGGCTGCCATCTGTaGGGCCCTCCGGTAGGGCCA | + |
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Preference number: 5 (lower is better) Translates to: GMGRRHTVLYTVTFKEHIGGCHL*GPPVGP Trigger: TGGCCCTACCGGAGGGCCCAACAGATGGCAGCCTCC...TATATGTTCTTTGAAGGTCACTGTGTACAGGACTGTGTGCCTCCTCCCCATCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159148.8 |
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| CDS-3UTR CAA 90 bp | GGGATGGGGAGGAGGCACACAGTCCTGTACACAGTGACCTTCAAAGAACATATACGGTGCCATGGCGTCTaGGCACAGTTCCCCATGGGT | + |
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Preference number: 5 (lower is better) Translates to: GMGRRHTVLYTVTFKEHIRCHGV*AQFPMG Trigger: ACCCATGGGGAACTGTGCCAAGACGCCATGGCACCG...TATATGTTCTTTGAAGGTCACTGTGTACAGGACTGTGTGCCTCCTCCCCATCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS-3UTR CAA 90 bp | GGGATGGGGAGGAGGCACACAGTCCTGTACACAGTGACCTTCAAAGAACATATACTCATCTACTTCCCGTaGGCTGAGGCGTTCCCCCAG | + |
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Preference number: 5 (lower is better) Translates to: GMGRRHTVLYTVTFKEHILIYFP*AEAFPQ Trigger: CTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAG...TATATGTTCTTTGAAGGTCACTGTGTACAGGACTGTGTGCCTCCTCCCCATCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS-3UTR CAA 90 bp | TTCCCAACAAGCTTGGAGATGTTTTATTGCCAGAGAACCAGGACGAGGTATGGGCTCATCTACTTCCCGTaGGCTGAGGCGTTCCCCCAG | + |
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Preference number: 5 (lower is better) Translates to: FPTSLEMFYCQRTRTRYGLIYFP*AEAFPQ Trigger: CTGGGGGAACGCCTCAGCCAACGGGAAGTAGATGAG...CCCATACCTCGTCCTGGTTCTCTGGCAATAAAACATCTCCAAGCTTGTTGGGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS GCA 72 bp | TTGGCTGAGGCGTTCCCCCAGCAGAGCTTTGAGGGCTaGCCGGAGCTCCCCTACGCTGATGCAGCCATCACC | + |
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Preference number: 6 (lower is better) Translates to: LAEAFPQQSFEG*PELPYADAAIT Trigger: GGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAAAGCTCTGCTGGGGGAACGCCTCAGCCAA 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS CAA 72 bp | GCCCGGAGCTCCCCTACGCTGATGCAGCCATCACCGTaGGTGTCGAACTCCCGGAAGGCGTCTCGAAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: ARSSPTLMQPSP*VSNSRKASRSS Trigger: GGAGCTTCGAGACGCCTTCCGGGAGTTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS CAA 90 bp | TTGAGGGCTGCCCGGAGCTCCCCTACGCTGATGCAGCCATCACCGTaGGTGTCGAACTCCCGGAAGGCGTCTCGAAGCTCCCTCACGCCA | + |
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Preference number: 6 (lower is better) Translates to: LRAARSSPTLMQPSP*VSNSRKASRSSLTP Trigger: TGGCGTGAGGGAGCTTCGAGACGCCTTCCGGGAGTTCGACACCAACGGTGATGGCTGCATCAGCGTAGGGGAGCTCCGGGCAGCCCTCAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS GCA 72 bp | GATCCAGGCCACTGCCAGCGTTCCTTAGACCCCCGGTaGCATGGCGTCTTGGCACAGTTCCCCATGGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: DPGHCQRSLDPR*HGVLAQFPMGL Trigger: GAGACCCATGGGGAACTGTGCCAAGACGCCATGGCACCGGGGGTCTAAGGAACGCTGGCAGTGGCCTGGATC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162908.2 |
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| CDS CCA 72 bp | AGGGCCCTTCTGCGAGTAGTGGGGCTGGCTAGGTCTTaGCTGGGTCCTGCAGTGCCTGAGGATGGACTGGAG | + |
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Preference number: 6 (lower is better) Translates to: RALLRVVGLARS*LGPAVPEDGLE Trigger: CTCCAGTCCATCCTCAGGCACTGCAGGACCCAGCCAAGACCTAGCCAGCCCCACTACTCGCAGAAGGGCCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000159148.8 ENSMUST00000159593.8 |
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| CDS CCA 72 bp | AGGCCACTGCCAGCGTTCCTTAGACCCCCGGTGCCATaGCGTCTTGGCACAGTTCCCCATGGGTCTCTGAAC | + |
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Preference number: 6 (lower is better) Translates to: RPLPAFLRPPVP*RLGTVPHGSLN Trigger: GTTCAGAGACCCATGGGGAACTGTGCCAAGACGCCATGGCACCGGGGGTCTAAGGAACGCTGGCAGTGGCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000162908.2 |
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| CDS GCA 72 bp | TCTTCTGGTCTCAGCTCTCGATCCTTAGACCCCCGGTaGCATGGCGTCTTGGCACAGTTCCCCATGGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: SSGLSSRSLDPR*HGVLAQFPMGL Trigger: GAGACCCATGGGGAACTGTGCCAAGACGCCATGGCACCGGGGGTCTAAGGATCGAGAGCTGAGACCAGAAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159556.8 |
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| CDS CCA 72 bp | TGGTCTCAGCTCTCGATCCTTAGACCCCCGGTGCCATaGCGTCTTGGCACAGTTCCCCATGGGTCTCTGAAC | + |
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Preference number: 6 (lower is better) Translates to: WSQLSILRPPVP*RLGTVPHGSLN Trigger: GTTCAGAGACCCATGGGGAACTGTGCCAAGACGCCATGGCACCGGGGGTCTAAGGATCGAGAGCTGAGACCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000159556.8 |
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| CDS CCA 72 bp | CTCCTGGAAGGCGATCTGCAGCTCTTCGATCTCTTCTaGTCTCAGCTCTCGATCCTGTCCGTAGGCAGCCTG | + |
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Preference number: 6 (lower is better) Translates to: LLEGDLQLFDLF*SQLSILSVGSL Trigger: CAGGCTGCCTACGGACAGGATCGAGAGCTGAGACCAGAAGAGATCGAAGAGCTGCAGATCGCCTTCCAGGAG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000159148.8 ENSMUST00000159593.8 |
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| CDS CCA 72 bp | CTCCTGGAAGGCGATCTGCAGCTCTTCGATCTCTTCTaGTCTCAGCTCTCGATCCTTAGACCCCCGGTGCCA | + |
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Preference number: 6 (lower is better) Translates to: LLEGDLQLFDLF*SQLSILRPPVP Trigger: TGGCACCGGGGGTCTAAGGATCGAGAGCTGAGACCAGAAGAGATCGAAGAGCTGCAGATCGCCTTCCAGGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159556.8 |
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| CDS CCA 72 bp | CTCCTGGAAGGCGATCTGCAGCTCTTCGATCTCTTCTaGTCTCAGCTCTCGATCGAGCTGGGTAGCCGCGAT | + |
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Preference number: 6 (lower is better) Translates to: LLEGDLQLFDLF*SQLSIELGSRD Trigger: ATCGCGGCTACCCAGCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAGAGCTGCAGATCGCCTTCCAGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162908.2 |
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| CDS GCA 72 bp | TCGAAGCTCCCTCACGCCAATCATGTCTGCCGTCTCTaGCAGCAGCTTGGGACCCATCAGCTCCACAAAATC | + |
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Preference number: 6 (lower is better) Translates to: SKLPHANHVCRL*QQLGTHQLHKI Trigger: GATTTTGTGGAGCTGATGGGTCCCAAGCTGCTGGCAGAGACGGCAGACATGATTGGCGTGAGGGAGCTTCGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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| CDS CCA 72 bp | TCTTCGATCTCTTCTGGTCTCAGCTCTCGATCGAGCTaGGTAGCCGCGATGCTGGGTCGAAGGAAGATGCAT | + |
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Preference number: 6 (lower is better) Translates to: SSISSGLSSRSS*VAAMLGRRKMH Trigger: ATGCATCTTCCTTCGACCCAGCATCGCGGCTACCCAGCTCGATCGAGAGCTGAGACCAGAAGAGATCGAAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000162908.2 |
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| CDS TCA 72 bp | GAACAAATTCTTCAAAGTCAACCAGGCCATCTCCATTaGGGTCAATGTCTTGGAGTATCTCATCTACTTCCC | + |
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Preference number: 6 (lower is better) Translates to: EQILQSQPGHLH*GQCLGVSHLLP Trigger: GGGAAGTAGATGAGATACTCCAAGACATTGACCTCAATGGAGATGGCCTGGTTGACTTTGAAGAATTTGTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000159148.8 ENSMUST00000159556.8 ENSMUST00000162908.2 |
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