Pregenerated sensors for CABCOCO1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019945Ensembl transcript IDs: ENSMUST00000020103.9, ENSMUST00000166919.4
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACAAAGCAATGCTCTTACACTATAAACTCAGAGGTGGGTGTGGGATaGGAGGGGCGGGACAACGTGCTGCCAGTCAGTCCGGATAACCGG | + |
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Preference number: 1 (lower is better) Translates to: TKQCSYTINSEVGVG*EGRDNVLPVSPDNR Trigger: CCGGTTATCCGGACTGACTGGCAGCACGTTGTCCCGCCCCTCCCATCCCACACCCACCTCTGAGTTTATAGTGTAAGAGCATTGCTTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| 3UTR GCA 72 bp | AGGTGGGTGTGGGATGGGAGGGGCGGGACAACGTGCTaGCAGTCAGTCCGGATAACCGGAAGTGGGTTTTCC | + |
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Preference number: 3 (lower is better) Translates to: RWVWDGRGGTTC*QSVRITGSGFS Trigger: GGAAAACCCACTTCCGGTTATCCGGACTGACTGGCAGCACGTTGTCCCGCCCCTCCCATCCCACACCCACCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| 3UTR-3UTR CAA 90 bp | ATACACACAAAGCAATGCTCTTACACTATAAACTCAGAGGTGGGTGTGGGATGGTTGTACTGGCCGGTTTaGTTTGTTTCTCTGAAGTTG | + |
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Preference number: 3 (lower is better) Translates to: IHTKQCSYTINSEVGVGWLYWPV*FVSLKL Trigger: CAACTTCAGAGAAACAAACAAAACCGGCCAGTACAA...CCATCCCACACCCACCTCTGAGTTTATAGTGTAAGAGCATTGCTTTGTGTGTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR TCA 90 bp | TGGGTGTGGGATGGGAGGGGCGGGACAACGTGCTGCCAGTCAGTCCGGATAACCTGGCGTTGGCTTCCTTaGCTTCGAAGACATGGAAAT | + |
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Preference number: 4 (lower is better) Translates to: WVWDGRGGTTCCQSVRITWRWLP*LRRHGN Trigger: ATTTCCATGTCTTCGAAGTCAAGGAAGCCAACGCCA...GGTTATCCGGACTGACTGGCAGCACGTTGTCCCGCCCCTCCCATCCCACACCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR CCA 90 bp | TATACACACAAAGCAATGCTCTTACACTATAAACTCAGAGGTGGGTGTGGGATGAGAAGTGCTGCCTACTaGCGACACCCCAGGGGTGGT | + |
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Preference number: 4 (lower is better) Translates to: YTHKAMLLHYKLRGGCGMRSAAY*RHPRGG Trigger: ACCACCCCTGGGGTGTCGCCAGTAGGCAGCACTTCT...CATCCCACACCCACCTCTGAGTTTATAGTGTAAGAGCATTGCTTTGTGTGTATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020103.9 |
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| CDS-3UTR GCA 90 bp | CTAGAGACACTATTGTACTGGCCGGTTTTGTTTGTTTCTCTGAAGTTGAGCATCCAGAGTCAGAAGTGCTaGCTACTGGCGACACCCCAG | + |
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Preference number: 4 (lower is better) Translates to: LETLLYWPVLFVSLKLSIQSQKC*LLATPQ Trigger: CTGGGGTGTCGCCAGTAGGCAGCACTTCTGACTCTG...GATGCTCAACTTCAGAGAAACAAACAAAACCGGCCAGTACAATAGTGTCTCTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020103.9 |
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| CDS-3UTR GCA 90 bp | TGCCAGTCAGTCCGGATAACCGGAAGTGGGTTTTCCTTTCTCGGACTGCATGGAAAATCTTCACTCTTCTaGGAGTGGTTTGGTCCGATT | + |
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Preference number: 4 (lower is better) Translates to: CQSVRITGSGFSFLGLHGKSSLF*EWFGPI Trigger: AATCGGACCAAACCACTCGCAGAAGAGTGAAGATTT...TCCATGCAGTCCGAGAAAGGAAAACCCACTTCCGGTTATCCGGACTGACTGGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR GCA 90 bp | TGCTGCCAGTCAGTCCGGATAACCGGAAGTGGGTTTTCCTTTCTCGGACTGCATAAATCTTCACTCTTCTaGGAGTGGTTTGGTCCGATT | + |
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Preference number: 4 (lower is better) Translates to: CCQSVRITGSGFSFLGLHKSSLF*EWFGPI Trigger: AATCGGACCAAACCACTCGCAGAAGAGTGAAGATTT...ATGCAGTCCGAGAAAGGAAAACCCACTTCCGGTTATCCGGACTGACTGGCAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR CCA 90 bp | ACTCTCCAAGATTATACACACAAAGCAATGCTCTTACACTATAAACTCAGAGGTGCGACACCCCAGGGGTaGTCAACGCCCAGGAGGTCA | + |
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Preference number: 4 (lower is better) Translates to: TLQDYTHKAMLLHYKLRGATPQG*STPRRS Trigger: TGACCTCCTGGGCGTTGACCACCCCTGGGGTGTCGC...ACCTCTGAGTTTATAGTGTAAGAGCATTGCTTTGTGTGTATAATCTTGGAGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020103.9 |
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| CDS-3UTR CCA 90 bp | GACAACGTGCTGCCAGTCAGTCCGGATAACCGGAAGTGGGTTTTCCTTTCTCGGAGAGGAGAGTATATCTaGAGACAGAATCCTTTCATT | + |
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Preference number: 4 (lower is better) Translates to: DNVLPVSPDNRKWVFLSRRGEYI*RQNPFI Trigger: AATGAAAGGATTCTGTCTCCAGATATACTCTCCTCT...CCGAGAAAGGAAAACCCACTTCCGGTTATCCGGACTGACTGGCAGCACGTTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020103.9 |
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| CDS-3UTR CCA 90 bp | TGCCAGTCAGTCCGGATAACCGGAAGTGGGTTTTCCTTTCTCGGACTGCATGGATTGACTTCGAAGACATaGAAATCTTCACTCTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: CQSVRITGSGFSFLGLHGLTSKT*KSSLFC Trigger: GCAGAAGAGTGAAGATTTCCATGTCTTCGAAGTCAA...TCCATGCAGTCCGAGAAAGGAAAACCCACTTCCGGTTATCCGGACTGACTGGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR TCA 90 bp | CAGCGCTCTAGAGACACTATTGTACTGGCCGGTTTTGTTTGTTTCTCTGAAGTTGGTAGTCTGCAGGCTTaGCAACCTCTATGGTTTGCT | + |
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Preference number: 4 (lower is better) Translates to: QRSRDTIVLAGFVCFSEVGSLQA*QPLWFA Trigger: AGCAAACCATAGAGGTTGTCAAGCCTGCAGACTACC...AACTTCAGAGAAACAAACAAAACCGGCCAGTACAATAGTGTCTCTAGAGCGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR GCA 90 bp | GACAACGTGCTGCCAGTCAGTCCGGATAACCGGAAGTGGGTTTTCCTTTCTCGGTCACTTATCTCTTTCTaGATGCTAATCAAAACCTCA | + |
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Preference number: 4 (lower is better) Translates to: DNVLPVSPDNRKWVFLSRSLISF*MLIKTS Trigger: TGAGGTTTTGATTAGCATGCAGAAAGAGATAAGTGA...CCGAGAAAGGAAAACCCACTTCCGGTTATCCGGACTGACTGGCAGCACGTTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR TCA 90 bp | CTAGAGACACTATTGTACTGGCCGGTTTTGTTTGTTTCTCTGAAGTTGAGCATCTTTGCTCAGTCCCGATaGCAATTTCTTCCCTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: LETLLYWPVLFVSLKLSIFAQSR*QFLPWW Trigger: CCACCAGGGAAGAAATTGTCATCGGGACTGAGCAAA...GATGCTCAACTTCAGAGAAACAAACAAAACCGGCCAGTACAATAGTGTCTCTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR GCA 90 bp | TGCTGCCAGTCAGTCCGGATAACCGGAAGTGGGTTTTCCTTTCTCGGACTGCATTCACTTATCTCTTTCTaGATGCTAATCAAAACCTCA | + |
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Preference number: 4 (lower is better) Translates to: CCQSVRITGSGFSFLGLHSLISF*MLIKTS Trigger: TGAGGTTTTGATTAGCATGCAGAAAGAGATAAGTGA...ATGCAGTCCGAGAAAGGAAAACCCACTTCCGGTTATCCGGACTGACTGGCAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR GCA 90 bp | ATACACACAAAGCAATGCTCTTACACTATAAACTCAGAGGTGGGTGTGGGATGGCAGTTTCTCTATTCGTaGGTTAAAGGCCTCTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: IHTKQCSYTINSEVGVGWQFLYS*VKGLFL Trigger: CAGGAAGAGGCCTTTAACGCACGAATAGAGAAACTG...CCATCCCACACCCACCTCTGAGTTTATAGTGTAAGAGCATTGCTTTGTGTGTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR GCA 90 bp | TATACACACAAAGCAATGCTCTTACACTATAAACTCAGAGGTGGGTGTGGGATGCAGTTTCTCTATTCGTaGGTTAAAGGCCTCTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: YTHKAMLLHYKLRGGCGMQFLYS*VKGLFL Trigger: CAGGAAGAGGCCTTTAACGCACGAATAGAGAAACTG...CATCCCACACCCACCTCTGAGTTTATAGTGTAAGAGCATTGCTTTGTGTGTATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR CCA 90 bp | ATACACACAAAGCAATGCTCTTACACTATAAACTCAGAGGTGGGTGTGGGATGGCAATTTCTTCCCTGGTaGAGTAGAACAGAAACTCGT | + |
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Preference number: 4 (lower is better) Translates to: IHTKQCSYTINSEVGVGWQFLPW*SRTETR Trigger: ACGAGTTTCTGTTCTACTCCACCAGGGAAGAAATTG...CCATCCCACACCCACCTCTGAGTTTATAGTGTAAGAGCATTGCTTTGTGTGTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR TCA 90 bp | ACTCTCCAAGATTATACACACAAAGCAATGCTCTTACACTATAAACTCAGAGGTTTTGCTCAGTCCCGATaGCAATTTCTTCCCTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: TLQDYTHKAMLLHYKLRGFAQSR*QFLPWW Trigger: CCACCAGGGAAGAAATTGTCATCGGGACTGAGCAAA...ACCTCTGAGTTTATAGTGTAAGAGCATTGCTTTGTGTGTATAATCTTGGAGAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR CCA 90 bp | TCTAGAGACACTATTGTACTGGCCGGTTTTGTTTGTTTCTCTGAAGTTGAGCATAAAAGTTCATCTCCTTaGCCCAACAGAAGCCAGACA | + |
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Preference number: 4 (lower is better) Translates to: SRDTIVLAGFVCFSEVEHKSSSP*PNRSQT Trigger: TGTCTGGCTTCTGTTGGGCCAAGGAGATGAACTTTT...ATGCTCAACTTCAGAGAAACAAACAAAACCGGCCAGTACAATAGTGTCTCTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020103.9 |
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| CDS-3UTR CCA 90 bp | CTAGAGACACTATTGTACTGGCCGGTTTTGTTTGTTTCTCTGAAGTTGAGCATCCAATTTCTTCCCTGGTaGAGTAGAACAGAAACTCGT | + |
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Preference number: 4 (lower is better) Translates to: LETLLYWPVLFVSLKLSIQFLPW*SRTETR Trigger: ACGAGTTTCTGTTCTACTCCACCAGGGAAGAAATTG...GATGCTCAACTTCAGAGAAACAAACAAAACCGGCCAGTACAATAGTGTCTCTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR TCA 90 bp | ACTCTCCAAGATTATACACACAAAGCAATGCTCTTACACTATAAACTCAGAGGTTGGCGTTGGCTTCCTTaGCTTCGAAGACATGGAAAT | + |
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Preference number: 4 (lower is better) Translates to: TLQDYTHKAMLLHYKLRGWRWLP*LRRHGN Trigger: ATTTCCATGTCTTCGAAGTCAAGGAAGCCAACGCCA...ACCTCTGAGTTTATAGTGTAAGAGCATTGCTTTGTGTGTATAATCTTGGAGAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR CCA 90 bp | TATACACACAAAGCAATGCTCTTACACTATAAACTCAGAGGTGGGTGTGGGATGGCCTCTTCCTGTACTTaGAGTTTTTCACTTATCTCT | + |
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Preference number: 4 (lower is better) Translates to: YTHKAMLLHYKLRGGCGMASSCT*SFSLIS Trigger: AGAGATAAGTGAAAAACTCCAAGTACAGGAAGAGGC...CATCCCACACCCACCTCTGAGTTTATAGTGTAAGAGCATTGCTTTGTGTGTATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR CCA 90 bp | CTCCAAGATTATACACACAAAGCAATGCTCTTACACTATAAACTCAGAGGTGGGGCCTCTTCCTGTACTTaGAGTTTTTCACTTATCTCT | + |
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Preference number: 4 (lower is better) Translates to: LQDYTHKAMLLHYKLRGGASSCT*SFSLIS Trigger: AGAGATAAGTGAAAAACTCCAAGTACAGGAAGAGGC...CCCACCTCTGAGTTTATAGTGTAAGAGCATTGCTTTGTGTGTATAATCTTGGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR CAA 90 bp | TGGGTGTGGGATGGGAGGGGCGGGACAACGTGCTGCCAGTCAGTCCGGATAACCCTGAGTCCCTTGCTCTaGATCCAGCACCTTCTGTTC | + |
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Preference number: 5 (lower is better) Translates to: WVWDGRGGTTCCQSVRITLSPLL*IQHLLF Trigger: GAACAGAAGGTGCTGGATCAAGAGCAAGGGACTCAG...GGTTATCCGGACTGACTGGCAGCACGTTGTCCCGCCCCTCCCATCCCACACCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR CAA 90 bp | GACAACGTGCTGCCAGTCAGTCCGGATAACCGGAAGTGGGTTTTCCTTTCTCGGGGCTTCCTGAGTCCCTaGCTCTTGATCCAGCACCTT | + |
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Preference number: 5 (lower is better) Translates to: DNVLPVSPDNRKWVFLSRGFLSP*LLIQHL Trigger: AAGGTGCTGGATCAAGAGCAAGGGACTCAGGAAGCC...CCGAGAAAGGAAAACCCACTTCCGGTTATCCGGACTGACTGGCAGCACGTTGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR CAA 90 bp | TGCTGCCAGTCAGTCCGGATAACCGGAAGTGGGTTTTCCTTTCTCGGACTGCATGAAAAGTTCATCTCCTaGGCCCAACAGAAGCCAGAC | + |
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Preference number: 5 (lower is better) Translates to: CCQSVRITGSGFSFLGLHEKFIS*AQQKPD Trigger: GTCTGGCTTCTGTTGGGCCAAGGAGATGAACTTTTC...ATGCAGTCCGAGAAAGGAAAACCCACTTCCGGTTATCCGGACTGACTGGCAGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020103.9 |
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| CDS-3UTR CAA 90 bp | GACAACGTGCTGCCAGTCAGTCCGGATAACCGGAAGTGGGTTTTCCTTTCTCGGGGCCTCTTCCTGTACTaGGAGTTTTTCACTTATCTC | + |
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Preference number: 5 (lower is better) Translates to: DNVLPVSPDNRKWVFLSRGLFLY*EFFTYL Trigger: GAGATAAGTGAAAAACTCCAAGTACAGGAAGAGGCC...CCGAGAAAGGAAAACCCACTTCCGGTTATCCGGACTGACTGGCAGCACGTTGTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR CAA 90 bp | ATACACACAAAGCAATGCTCTTACACTATAAACTCAGAGGTGGGTGTGGGATGGCTGAGTCCCTTGCTCTaGATCCAGCACCTTCTGTTC | + |
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Preference number: 5 (lower is better) Translates to: IHTKQCSYTINSEVGVGWLSPLL*IQHLLF Trigger: GAACAGAAGGTGCTGGATCAAGAGCAAGGGACTCAG...CCATCCCACACCCACCTCTGAGTTTATAGTGTAAGAGCATTGCTTTGTGTGTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR CAA 90 bp | ACACTATTGTACTGGCCGGTTTTGTTTGTTTCTCTGAAGTTGAGCATCACTTTGGGCTTCCTGAGTCCCTaGCTCTTGATCCAGCACCTT | + |
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Preference number: 5 (lower is better) Translates to: TLLYWPVLFVSLKLSITLGFLSP*LLIQHL Trigger: AAGGTGCTGGATCAAGAGCAAGGGACTCAGGAAGCC...CAAAGTGATGCTCAACTTCAGAGAAACAAACAAAACCGGCCAGTACAATAGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR CAA 90 bp | CAGCGCTCTAGAGACACTATTGTACTGGCCGGTTTTGTTTGTTTCTCTGAAGTTGACAACCTCTATGGTTaGCTCAGTCCCGATGACAAT | + |
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Preference number: 5 (lower is better) Translates to: QRSRDTIVLAGFVCFSEVDNLYG*LSPDDN Trigger: ATTGTCATCGGGACTGAGCAAACCATAGAGGTTGTC...AACTTCAGAGAAACAAACAAAACCGGCCAGTACAATAGTGTCTCTAGAGCGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS GCA 90 bp | TTAAAGGCCTCTTCCTGTACTTGGAGTTTTTCACTTATCTCTTTCTaGATGCTAATCAAAACCTCATCCGTCACTCGCTCCAGGGCTGAT | + |
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Preference number: 5 (lower is better) Translates to: LKASSCTWSFSLISF*MLIKTSSVTRSRAD Trigger: ATCAGCCCTGGAGCGAGTGACGGATGAGGTTTTGATTAGCATGCAGAAAGAGATAAGTGAAAAACTCCAAGTACAGGAAGAGGCCTTTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR CAA 90 bp | ATACACACAAAGCAATGCTCTTACACTATAAACTCAGAGGTGGGTGTGGGATGGGGCCTCTTCCTGTACTaGGAGTTTTTCACTTATCTC | + |
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Preference number: 5 (lower is better) Translates to: IHTKQCSYTINSEVGVGWGLFLY*EFFTYL Trigger: GAGATAAGTGAAAAACTCCAAGTACAGGAAGAGGCC...CCATCCCACACCCACCTCTGAGTTTATAGTGTAAGAGCATTGCTTTGTGTGTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS-3UTR CAA 90 bp | ACACTATTGTACTGGCCGGTTTTGTTTGTTTCTCTGAAGTTGAGCATCACTTTGCACTCCCAGTTTTTCTaGAATTCCATTTTCGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: TLLYWPVLFVSLKLSITLHSQFF*NSIFVL Trigger: GAGAACGAAAATGGAATTCAAGAAAAACTGGGAGTG...CAAAGTGATGCTCAACTTCAGAGAAACAAACAAAACCGGCCAGTACAATAGTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020103.9 |
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| CDS CCA 90 bp | TTCTTCAGTTTCTCTATTCGTGCGTTAAAGGCCTCTTCCTGTACTTaGAGTTTTTCACTTATCTCTTTCTGCATGCTAATCAAAACCTCA | + |
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Preference number: 5 (lower is better) Translates to: FFSFSIRALKASSCT*SFSLISFCMLIKTS Trigger: TGAGGTTTTGATTAGCATGCAGAAAGAGATAAGTGAAAAACTCCAAGTACAGGAAGAGGCCTTTAACGCACGAATAGAGAAACTGAAGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS CAA 72 bp | TTCACTCTCCAGCAGGGCTTCCTGAGTCCCTTGCTCTaGATCCAGCACCTTCTGTTCCATGTCCGGCGTTGG | + |
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Preference number: 6 (lower is better) Translates to: FTLQQGFLSPLL*IQHLLFHVRRW Trigger: CCAACGCCGGACATGGAACAGAAGGTGCTGGATCAAGAGCAAGGGACTCAGGAAGCCCTGCTGGAGAGTGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS GCA 72 bp | GAGACAGAATCCTTTCATTCTCCTCAGAGTCAGAAGTaGTGCCTACTGGCGACACCCCAGGGGTGGTCAACG | + |
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Preference number: 6 (lower is better) Translates to: ETESFHSPQSQK*CLLATPQGWST Trigger: CGTTGACCACCCCTGGGGTGTCGCCAGTAGGCAGCACTTCTGACTCTGAGGAGAATGAAAGGATTCTGTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020103.9 |
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| CDS CAA 90 bp | GGGGGCTGGGAAGGGGTAGTCTGCAGGCTTGACAACCTCTATGGTTaGCTCAGTCCCGATGACAATTTCTTCCCTGGTGGAGTAGAACAG | + |
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Preference number: 6 (lower is better) Translates to: GGWEGVVCRLDNLYG*LSPDDNFFPGGVEQ Trigger: CTGTTCTACTCCACCAGGGAAGAAATTGTCATCGGGACTGAGCAAACCATAGAGGTTGTCAAGCCTGCAGACTACCCCTTCCCAGCCCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS CAA 90 bp | ATCCTCCTCTCTCATTTCACTCTCCAGCAGGGCTTCCTGAGTCCCTaGCTCTTGATCCAGCACCTTCTGTTCCATGTCCGGCGTTGGCAA | + |
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Preference number: 6 (lower is better) Translates to: ILLSHFTLQQGFLSP*LLIQHLLFHVRRWQ Trigger: TTGCCAACGCCGGACATGGAACAGAAGGTGCTGGATCAAGAGCAAGGGACTCAGGAAGCCCTGCTGGAGAGTGAAATGAGAGAGGAGGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS CAA 72 bp | CGAAGACATGGAAATCTTCACTCTTCTGCGAGTGGTTaGGTCCGATTTCTGCCATCACTTCCCCGAGCCACT | + |
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Preference number: 6 (lower is better) Translates to: RRHGNLHSSASG*VRFLPSLPRAT Trigger: AGTGGCTCGGGGAAGTGATGGCAGAAATCGGACCAAACCACTCGCAGAAGAGTGAAGATTTCCATGTCTTCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS CCA 72 bp | GAAGACATGGAAATCTTCACTCTTCTGCGAGTGGTTTaGTCCGATTTCTGCCATCACTTCCCCGAGCCACTT | + |
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Preference number: 6 (lower is better) Translates to: EDMEIFTLLRVV*SDFCHHFPEPL Trigger: AAGTGGCTCGGGGAAGTGATGGCAGAAATCGGACCAAACCACTCGCAGAAGAGTGAAGATTTCCATGTCTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS CCA 72 bp | ACTTCGAAGACATGGAAATCTTCACTCTTCTGCGAGTaGTTTGGTCCGATTTCTGCCATCACTTCCCCGAGC | + |
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Preference number: 6 (lower is better) Translates to: TSKTWKSSLFCE*FGPISAITSPS Trigger: GCTCGGGGAAGTGATGGCAGAAATCGGACCAAACCACTCGCAGAAGAGTGAAGATTTCCATGTCTTCGAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS TCA 72 bp | CCTTCTGTTCCATGTCCGGCGTTGGCAATGGCTCTATaGAGGTTGAATACGTGTCCAATGAGATACCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: PSVPCPALAMAL*RLNTCPMRYLL Trigger: AAGAAGGTATCTCATTGGACACGTATTCAACCTTCATAGAGCCATTGCCAACGCCGGACATGGAACAGAAGG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS GCA 72 bp | TCCTTGACTTCGAAGACATGGAAATCTTCACTCTTCTaGGAGTGGTTTGGTCCGATTTCTGCCATCACTTCC | + |
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Preference number: 6 (lower is better) Translates to: SLTSKTWKSSLF*EWFGPISAITS Trigger: GGAAGTGATGGCAGAAATCGGACCAAACCACTCGCAGAAGAGTGAAGATTTCCATGTCTTCGAAGTCAAGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS CCA 72 bp | CCATTTTCGTTCTCTTCTCCCAACAGGTCAATGATCTaGTCAGAGGAGAGTATATCTGGAGACAGAATCCTT | + |
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Preference number: 6 (lower is better) Translates to: PFSFSSPNRSMI*SEESISGDRIL Trigger: AAGGATTCTGTCTCCAGATATACTCTCCTCTGACCAGATCATTGACCTGTTGGGAGAAGAGAACGAAAATGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020103.9 |
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| CDS CCA 72 bp | TTCTCTATTCGTGCGTTAAAGGCCTCTTCCTGTACTTaGAGTTTTTCACTTATCTCTTTCTGCATGCTAATC | + |
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Preference number: 6 (lower is better) Translates to: FSIRALKASSCT*SFSLISFCMLI Trigger: GATTAGCATGCAGAAAGAGATAAGTGAAAAACTCCAAGTACAGGAAGAGGCCTTTAACGCACGAATAGAGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS CAA 90 bp | TTTCTTCAGTTTCTCTATTCGTGCGTTAAAGGCCTCTTCCTGTACTaGGAGTTTTTCACTTATCTCTTTCTGCATGCTAATCAAAACCTC | + |
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Preference number: 6 (lower is better) Translates to: FLQFLYSCVKGLFLY*EFFTYLFLHANQNL Trigger: GAGGTTTTGATTAGCATGCAGAAAGAGATAAGTGAAAAACTCCAAGTACAGGAAGAGGCCTTTAACGCACGAATAGAGAAACTGAAGAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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| CDS CAA 72 bp | TTTCTCTATTCGTGCGTTAAAGGCCTCTTCCTGTACTaGGAGTTTTTCACTTATCTCTTTCTGCATGCTAAT | + |
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Preference number: 6 (lower is better) Translates to: FLYSCVKGLFLY*EFFTYLFLHAN Trigger: ATTAGCATGCAGAAAGAGATAAGTGAAAAACTCCAAGTACAGGAAGAGGCCTTTAACGCACGAATAGAGAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020103.9 ENSMUST00000166919.4 |
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