Pregenerated sensors for CAB39 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036707Ensembl transcript IDs: ENSMUST00000097666.4, ENSMUST00000113360.8, ENSMUST00000126962.3, ENSMUST00000130754.8
Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CGCCATCTTCCTTCGGCAGAGATGGTGGGTATGCCCGTGCCATACTaGACAGACCTGCAGAGAGCAGTGCCGATGGACGGGCAGGTGTCA | + |
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Preference number: 1 (lower is better) Translates to: RHLPSAEMVGMPVPY*TDLQRAVPMDGQVS Trigger: TGACACCTGCCCGTCCATCGGCACTGCTCTCTGCAGGTCTGTGCAGTATGGCACGGGCATACCCACCATCTCTGCCGAAGGAAGATGGCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR GCA 90 bp | ACAATCCCTGTATGCGCCATCTTCCTTCGGCAGAGATGGTGGGTATaGCCGTGCCATACTGCACAGACCTGCAGAGAGCAGTGCCGATGG | + |
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Preference number: 1 (lower is better) Translates to: TIPVCAIFLRQRWWV*PCHTAQTCREQCRW Trigger: CCATCGGCACTGCTCTCTGCAGGTCTGTGCAGTATGGCACGGGCATACCCACCATCTCTGCCGAAGGAAGATGGCGCATACAGGGATTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR CCA 90 bp | GTATGCCCGTGCCATACTGCACAGACCTGCAGAGAGCAGTGCCGATaGACGGGCAGGTGTCAGCGATGTATCACCGTCTTTTCCCTAGAC | + |
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Preference number: 1 (lower is better) Translates to: VCPCHTAQTCREQCR*TGRCQRCITVFSLD Trigger: GTCTAGGGAAAAGACGGTGATACATCGCTGACACCTGCCCGTCCATCGGCACTGCTCTCTGCAGGTCTGTGCAGTATGGCACGGGCATAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR CCA 90 bp | TCTCCAACAATCCCTGTATGCGCCATCTTCCTTCGGCAGAGATGGTaGGTATGCCCGTGCCATACTGCACAGACCTGCAGAGAGCAGTGC | + |
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Preference number: 1 (lower is better) Translates to: SPTIPVCAIFLRQRW*VCPCHTAQTCREQC Trigger: GCACTGCTCTCTGCAGGTCTGTGCAGTATGGCACGGGCATACCCACCATCTCTGCCGAAGGAAGATGGCGCATACAGGGATTGTTGGAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR GCA 90 bp | CTCCCCAAAGCTCACACTGGATACAGTTCTCCAACAATCCCTGTATaGGCCATCTTCCTTCGGCAGAGATGGTGGGTATGCCCGTGCCAT | + |
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Preference number: 1 (lower is better) Translates to: LPKAHTGYSSPTIPV*AIFLRQRWWVCPCH Trigger: ATGGCACGGGCATACCCACCATCTCTGCCGAAGGAAGATGGCGCATACAGGGATTGTTGGAGAACTGTATCCAGTGTGAGCTTTGGGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR GCA 90 bp | ATGACACAGAGATCAAGGGAAAGAAAGACCACGTGCGCTCTAATGTaGAAGCAGCAGCAGCTACGTTCTCCAACCTGGACTGAAAAACAA | + |
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Preference number: 1 (lower is better) Translates to: MTQRSRERKTTCALM*KQQQLRSPTWTEKQ Trigger: TTGTTTTTCAGTCCAGGTTGGAGAACGTAGCTGCTGCTGCTTGCACATTAGAGCGCACGTGGTCTTTCTTTCCCTTGATCTCTGTGTCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR CCA 90 bp | ATCAATTTATTTGCACACCAACTTTATCCTCCCCAAAGCTCACACTaGATACAGTTCTCCAACAATCCCTGTATGCGCCATCTTCCTTCG | + |
|
Preference number: 1 (lower is better) Translates to: INLFAHQLYPPQSSH*IQFSNNPCMRHLPS Trigger: CGAAGGAAGATGGCGCATACAGGGATTGTTGGAGAACTGTATCCAGTGTGAGCTTTGGGGAGGATAAAGTTGGTGTGCAAATAAATTGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR-3UTR TCA 90 bp | CAGACCTGCAGAGAGCAGTGCCGATGGACGGGCAGGTGTCAGCGATGTATCACCGCTGACAGCCAGTGCTaGGCTTGGATGGGACCGGGG | + |
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Preference number: 2 (lower is better) Translates to: QTCREQCRWTGRCQRCITADSQC*AWMGPG Trigger: CCCCGGTCCCATCCAAGCTCAGCACTGGCTGTCAGC...GGTGATACATCGCTGACACCTGCCCGTCCATCGGCACTGCTCTCTGCAGGTCTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR-3UTR TCA 90 bp | ACAATCCCTGTATGCGCCATCTTCCTTCGGCAGAGATGGTGGGTATGCCCGTGCGCTGACAGCCAGTGCTaGGCTTGGATGGGACCGGGG | + |
|
Preference number: 2 (lower is better) Translates to: TIPVCAIFLRQRWWVCPCADSQC*AWMGPG Trigger: CCCCGGTCCCATCCAAGCTCAGCACTGGCTGTCAGC...GCACGGGCATACCCACCATCTCTGCCGAAGGAAGATGGCGCATACAGGGATTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR-3UTR TCA 90 bp | GGTATGCCCGTGCCATACTGCACAGACCTGCAGAGAGCAGTGCCGATGGACGGGCTCCCCATGAACCGATaGGAGTGCCTGATGCTGAGG | + |
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Preference number: 2 (lower is better) Translates to: GMPVPYCTDLQRAVPMDGLPMNR*ECLMLR Trigger: CCTCAGCATCAGGCACTCTCATCGGTTCATGGGGAG...CCCGTCCATCGGCACTGCTCTCTGCAGGTCTGTGCAGTATGGCACGGGCATACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR-3UTR TCA 90 bp | ACAATCCCTGTATGCGCCATCTTCCTTCGGCAGAGATGGTGGGTATGCCCGTGCCTGATGCTGAGGAGCTaGCAGCCAGTGCTGAGCTTG | + |
|
Preference number: 2 (lower is better) Translates to: TIPVCAIFLRQRWWVCPCLMLRS*QPVLSL Trigger: CAAGCTCAGCACTGGCTGTCAGCTCCTCAGCATCAG...GCACGGGCATACCCACCATCTCTGCCGAAGGAAGATGGCGCATACAGGGATTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR-3UTR TCA 90 bp | ACAATCCCTGTATGCGCCATCTTCCTTCGGCAGAGATGGTGGGTATGCCCGTGCCTCCCCATGAACCGATaGGAGTGCCTGATGCTGAGG | + |
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Preference number: 2 (lower is better) Translates to: TIPVCAIFLRQRWWVCPCLPMNR*ECLMLR Trigger: CCTCAGCATCAGGCACTCTCATCGGTTCATGGGGAG...GCACGGGCATACCCACCATCTCTGCCGAAGGAAGATGGCGCATACAGGGATTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR-3UTR GCA 90 bp | AACAATCCCTGTATGCGCCATCTTCCTTCGGCAGAGATGGTGGGTATGCCCGTGACGTGCGCTCTAATGTaGAAGCAGCAGCAGCTACGT | + |
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Preference number: 2 (lower is better) Translates to: NNPCMRHLPSAEMVGMPVTCALM*KQQQLR Trigger: ACGTAGCTGCTGCTGCTTGCACATTAGAGCGCACGT...CACGGGCATACCCACCATCTCTGCCGAAGGAAGATGGCGCATACAGGGATTGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR-3UTR TCA 90 bp | ACAATCCCTGTATGCGCCATCTTCCTTCGGCAGAGATGGTGGGTATGCCCGTGCTCTCATTTGCTTTCATaGACCCAGCCATGTTCAGAA | + |
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Preference number: 2 (lower is better) Translates to: TIPVCAIFLRQRWWVCPCSHLLS*TQPCSE Trigger: TTCTGAACATGGCTGGGTTCATGAAAGCAAATGAGA...GCACGGGCATACCCACCATCTCTGCCGAAGGAAGATGGCGCATACAGGGATTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR-3UTR TCA 90 bp | CAGCGATGTATCACCGTCTTTTCCCTAGACCACTCTCACTCTCATTTGCTTTCAGGAGTCTGTGAGTTCTaGAATGACACAGAGATCAAG | + |
|
Preference number: 2 (lower is better) Translates to: QRCITVFSLDHSHSHLLSGVCEF*NDTEIK Trigger: CTTGATCTCTGTGTCATTTCAGAACTCACAGACTCC...TGAAAGCAAATGAGAGTGAGAGTGGTCTAGGGAAAAGACGGTGATACATCGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR-3UTR TCA 90 bp | ACCGCTCTCTGTGTTAGCCCAAGTGGAAACTGTTCTGTTGTCTCAAGTTCTAAGCTGGAGTGGTTTTTCTaGCTTGTATTCCTTGAAGGA | + |
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Preference number: 2 (lower is better) Translates to: TALCVSPSGNCSVVSSSKLEWFF*LVFLEG Trigger: TCCTTCAAGGAATACAAGTCAGAAAAACCACTCCAG...CTTAGAACTTGAGACAACAGAACAGTTTCCACTTGGGCTAACACAGAGAGCGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113360.8 |
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| 3UTR-3UTR GCA 90 bp | ACCGCTCTCTGTGTTAGCCCAAGTGGAAACTGTTCTGTTGTCTCAAGTTCTAAGACTCTCACTCTCATTTaGTTTCATGAACCCAGCCAT | + |
|
Preference number: 2 (lower is better) Translates to: TALCVSPSGNCSVVSSSKTLTLI*FHEPSH Trigger: ATGGCTGGGTTCATGAAAGCAAATGAGAGTGAGAGT...CTTAGAACTTGAGACAACAGAACAGTTTCCACTTGGGCTAACACAGAGAGCGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113360.8 |
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| 3UTR GCA 72 bp | TGCCCGTGCCATACTGCACAGACCTGCAGAGAGCAGTaGCGATGGACGGGCAGGTGTCAGCGATGTATCACC | + |
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Preference number: 3 (lower is better) Translates to: CPCHTAQTCREQ*RWTGRCQRCIT Trigger: GGTGATACATCGCTGACACCTGCCCGTCCATCGGCACTGCTCTCTGCAGGTCTGTGCAGTATGGCACGGGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR GCA 72 bp | GTATGCGCCATCTTCCTTCGGCAGAGATGGTGGGTATaGCCGTGCCATACTGCACAGACCTGCAGAGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: VCAIFLRQRWWV*PCHTAQTCREQ Trigger: CTGCTCTCTGCAGGTCTGTGCAGTATGGCACGGGCATACCCACCATCTCTGCCGAAGGAAGATGGCGCATAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR CCA 72 bp | TGCCATACTGCACAGACCTGCAGAGAGCAGTGCCGATaGACGGGCAGGTGTCAGCGATGTATCACCGTCTTT | + |
|
Preference number: 3 (lower is better) Translates to: CHTAQTCREQCR*TGRCQRCITVF Trigger: AAAGACGGTGATACATCGCTGACACCTGCCCGTCCATCGGCACTGCTCTCTGCAGGTCTGTGCAGTATGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR TCA 72 bp | GAAAGCCTTCTCAGCCCTCAGCTTCCAATGTGTGAGTaGCAGTTCCCTGACACACTGCATCCCATCTTCCAC | + |
|
Preference number: 3 (lower is better) Translates to: ESLLSPQLPMCE*QFPDTLHPIFH Trigger: GTGGAAGATGGGATGCAGTGTGTCAGGGAACTGTCACTCACACATTGGAAGCTGAGGGCTGAGAAGGCTTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113360.8 |
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| 3UTR GCA 72 bp | GCTCACACTGGATACAGTTCTCCAACAATCCCTGTATaGGCCATCTTCCTTCGGCAGAGATGGTGGGTATGC | + |
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Preference number: 3 (lower is better) Translates to: AHTGYSSPTIPV*AIFLRQRWWVC Trigger: GCATACCCACCATCTCTGCCGAAGGAAGATGGCGCATACAGGGATTGTTGGAGAACTGTATCCAGTGTGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR GCA 72 bp | AGATCAAGGGAAAGAAAGACCACGTGCGCTCTAATGTaGAAGCAGCAGCAGCTACGTTCTCCAACCTGGACT | + |
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Preference number: 3 (lower is better) Translates to: RSRERKTTCALM*KQQQLRSPTWT Trigger: AGTCCAGGTTGGAGAACGTAGCTGCTGCTGCTTGCACATTAGAGCGCACGTGGTCTTTCTTTCCCTTGATCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR CCA 72 bp | AGCTTGGCAAAGAGACACTCCTTCCACTTGGTGAAATaGCCACTCTGTCACCAAATCCTGACTCACAACGCG | + |
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Preference number: 3 (lower is better) Translates to: SLAKRHSFHLVK*PLCHQILTHNA Trigger: CGCGTTGTGAGTCAGGATTTGGTGACAGAGTGGCCATTTCACCAAGTGGAAGGAGTGTCTCTTTGCCAAGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113360.8 |
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| CDS-3UTR TCA 90 bp | AGAGTGCCTGATGCTGAGGAGCTGACAGCCAGTGCTGAGCTTGGATGGGACCGGGCTACCGCCTCTGTCTaGGGCTCCTTCTCATTGGTG | + |
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Preference number: 4 (lower is better) Translates to: RVPDAEELTASAELGWDRATASV*GSFSLV Trigger: CACCAATGAGAAGGAGCCTCAGACAGAGGCGGTAGC...CCGGTCCCATCCAAGCTCAGCACTGGCTGTCAGCTCCTCAGCATCAGGCACTCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR GCA 90 bp | CAGACCTGCAGAGAGCAGTGCCGATGGACGGGCAGGTGTCAGCGATGTATCACCTTCTCGTCGTTGAACTaGTCGTCCTCGGTCCTGTCG | + |
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Preference number: 4 (lower is better) Translates to: QTCREQCRWTGRCQRCITFSSLN*SSSVLS Trigger: CGACAGGACCGAGGACGAGCAGTTCAACGACGAGAA...GGTGATACATCGCTGACACCTGCCCGTCCATCGGCACTGCTCTCTGCAGGTCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR CCA 90 bp | AGAGTGCCTGATGCTGAGGAGCTGACAGCCAGTGCTGAGCTTGGATGGGACCGGGGAGGATGTCTAGGATaGGCTGCGTCTTGTTGGGGT | + |
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Preference number: 4 (lower is better) Translates to: RVPDAEELTASAELGWDRGGCLG*AASCWG Trigger: ACCCCAACAAGACGCAGCCCATCCTAGACATCCTCC...CCGGTCCCATCCAAGCTCAGCACTGGCTGTCAGCTCCTCAGCATCAGGCACTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR TCA 90 bp | AGTGCTCCCCATGAACCGATGAGAGTGCCTGATGCTGAGGAGCTGACAGCCAGTGCTACCGCCTCTGTCTaGGGCTCCTTCTCATTGGTG | + |
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Preference number: 4 (lower is better) Translates to: SAPHEPMRVPDAEELTASATASV*GSFSLV Trigger: CACCAATGAGAAGGAGCCTCAGACAGAGGCGGTAGC...ACTGGCTGTCAGCTCCTCAGCATCAGGCACTCTCATCGGTTCATGGGGAGCACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR TCA 90 bp | AGTGCTCCCCATGAACCGATGAGAGTGCCTGATGCTGAGGAGCTGACAGCCAGTAGGTCTTCTCGTCGTTaGACTGCTCGTCCTCGGTCC | + |
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Preference number: 4 (lower is better) Translates to: SAPHEPMRVPDAEELTASRSSRR*TARPRS Trigger: GGACCGAGGACGAGCAGTTCAACGACGAGAAGACCT...ACTGGCTGTCAGCTCCTCAGCATCAGGCACTCTCATCGGTTCATGGGGAGCACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR GCA 90 bp | ACAATCCCTGTATGCGCCATCTTCCTTCGGCAGAGATGGTGGGTATGCCCGTGCAGTCAGCTACCAGGGTaGCGAGGAGCCCGCTATTGT | + |
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Preference number: 4 (lower is better) Translates to: TIPVCAIFLRQRWWVCPCSQLPG*RGARYC Trigger: ACAATAGCGGGCTCCTCGGCACCCTGGTAGCTGACT...GCACGGGCATACCCACCATCTCTGCCGAAGGAAGATGGCGCATACAGGGATTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR CCA 90 bp | ATGGTGGGTATGCCCGTGCCATACTGCACAGACCTGCAGAGAGCAGTGCCGATGGGAGGATGTCTAGGATaGGCTGCGTCTTGTTGGGGT | + |
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Preference number: 4 (lower is better) Translates to: MVGMPVPYCTDLQRAVPMGGCLG*AASCWG Trigger: ACCCCAACAAGACGCAGCCCATCCTAGACATCCTCC...CATCGGCACTGCTCTCTGCAGGTCTGTGCAGTATGGCACGGGCATACCCACCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR TCA 90 bp | GGTATGCCCGTGCCATACTGCACAGACCTGCAGAGAGCAGTGCCGATGGACGGGTGCCCTCAAAGTCAATaGGCTGTAAGTCAGCTACCA | + |
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Preference number: 4 (lower is better) Translates to: GMPVPYCTDLQRAVPMDGCPQSQ*AVSQLP Trigger: TGGTAGCTGACTTACAGCTCATTGACTTTGAGGGCA...CCCGTCCATCGGCACTGCTCTCTGCAGGTCTGTGCAGTATGGCACGGGCATACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR TCA 90 bp | ACAATCCCTGTATGCGCCATCTTCCTTCGGCAGAGATGGTGGGTATGCCCGTGCTGGCCACAAACACCTTaGACACGTGGAAGGCCTCGA | + |
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Preference number: 4 (lower is better) Translates to: TIPVCAIFLRQRWWVCPCWPQTP*TRGRPR Trigger: TCGAGGCCTTCCACGTGTTCAAGGTGTTTGTGGCCA...GCACGGGCATACCCACCATCTCTGCCGAAGGAAGATGGCGCATACAGGGATTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR TCA 90 bp | ATGGTGGGTATGCCCGTGCCATACTGCACAGACCTGCAGAGAGCAGTGCCGATGGCTTGGTCTGGTTCTTaGGGAGGATGTCTAGGATGG | + |
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Preference number: 4 (lower is better) Translates to: MVGMPVPYCTDLQRAVPMAWSGS*GGCLGW Trigger: CCATCCTAGACATCCTCCTCAAGAACCAGACCAAGC...CATCGGCACTGCTCTCTGCAGGTCTGTGCAGTATGGCACGGGCATACCCACCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR TCA 90 bp | AGCAGTAGTGCTCCCCATGAACCGATGAGAGTGCCTGATGCTGAGGAGCTGACAAGGTCTTCTCGTCGTTaGACTGCTCGTCCTCGGTCC | + |
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Preference number: 4 (lower is better) Translates to: SSSAPHEPMRVPDAEELTRSSRR*TARPRS Trigger: GGACCGAGGACGAGCAGTTCAACGACGAGAAGACCT...TGTCAGCTCCTCAGCATCAGGCACTCTCATCGGTTCATGGGGAGCACTACTGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR GCA 90 bp | AGCAGTAGTGCTCCCCATGAACCGATGAGAGTGCCTGATGCTGAGGAGCTGACACCTCGAACTGGATGTTaGGGCTCTTGTCTCGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: SSSAPHEPMRVPDAEELTPRTGC*GSCLGG Trigger: TCCTCCGAGACAAGAGCCGCAACATCCAGTTCGAGG...TGTCAGCTCCTCAGCATCAGGCACTCTCATCGGTTCATGGGGAGCACTACTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR GCA 90 bp | GCCTTCTCAGCCCTCAGCTTCCAATGTGTGAGTGACAGTTCCCTGACACACTGCCCTCGAACTGGATGTTaGGGCTCTTGTCTCGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: AFSALSFQCVSDSSLTHCPRTGC*GSCLGG Trigger: TCCTCCGAGACAAGAGCCGCAACATCCAGTTCGAGG...GCAGTGTGTCAGGGAACTGTCACTCACACATTGGAAGCTGAGGGCTGAGAAGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113360.8 |
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| CDS-3UTR CCA 90 bp | GGTATGCCCGTGCCATACTGCACAGACCTGCAGAGAGCAGTGCCGATGGACGGGGAGGCTCCTTCTCATTaGTGCCGTACAGAATTTCTT | + |
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Preference number: 4 (lower is better) Translates to: GMPVPYCTDLQRAVPMDGEAPSH*CRTEFL Trigger: AAGAAATTCTGTACGGCACCAATGAGAAGGAGCCTC...CCCGTCCATCGGCACTGCTCTCTGCAGGTCTGTGCAGTATGGCACGGGCATACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR TCA 90 bp | GCCTTCTCAGCCCTCAGCTTCCAATGTGTGAGTGACAGTTCCCTGACACACTGCTCTGCCGGAGACTTGTaGGACTTGCCAAATGGGAAC | + |
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Preference number: 4 (lower is better) Translates to: AFSALSFQCVSDSSLTHCSAGDL*DLPNGN Trigger: GTTCCCATTTGGCAAGTCTCACAAGTCTCCGGCAGA...GCAGTGTGTCAGGGAACTGTCACTCACACATTGGAAGCTGAGGGCTGAGAAGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113360.8 |
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| CDS-3UTR TCA 90 bp | CAGACCTGCAGAGAGCAGTGCCGATGGACGGGCAGGTGTCAGCGATGTATCACCACCCAGAAGCTTCAGTaGCTGTCTCTTTGTCACATA | + |
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Preference number: 4 (lower is better) Translates to: QTCREQCRWTGRCQRCITTQKLQ*LSLCHI Trigger: TATGTGACAAAGAGACAGTCACTGAAGCTTCTGGGT...GGTGATACATCGCTGACACCTGCCCGTCCATCGGCACTGCTCTCTGCAGGTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR GCA 90 bp | TTCTCCAACAATCCCTGTATGCGCCATCTTCCTTCGGCAGAGATGGTGGGTATGATGTCTAGGATGGGCTaGGTCTTGTTGGGGTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: FSNNPCMRHLPSAEMVGMMSRMG*VLLGLA Trigger: GGCCAACCCCAACAAGACGCAGCCCATCCTAGACAT...CATACCCACCATCTCTGCCGAAGGAAGATGGCGCATACAGGGATTGTTGGAGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR GCA 90 bp | CTTAGCACAGCTGAGTCTGCACACTACCCAGCTGAGAATGTCCTTGTCCAGAAGATGTCTAGGATGGGCTaGGTCTTGTTGGGGTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: LSTAESAHYPAENVLVQKMSRMG*VLLGLA Trigger: GGCCAACCCCAACAAGACGCAGCCCATCCTAGACAT...CTTCTGGACAAGGACATTCTCAGCTGGGTAGTGTGCAGACTCAGCTGTGCTAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113360.8 |
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| CDS-3UTR GCA 90 bp | CTTAGCACAGCTGAGTCTGCACACTACCCAGCTGAGAATGTCCTTGTCCAGAAGTTCTCGTCGTTGAACTaGTCGTCCTCGGTCCTGTCG | + |
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Preference number: 4 (lower is better) Translates to: LSTAESAHYPAENVLVQKFSSLN*SSSVLS Trigger: CGACAGGACCGAGGACGAGCAGTTCAACGACGAGAA...CTTCTGGACAAGGACATTCTCAGCTGGGTAGTGTGCAGACTCAGCTGTGCTAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113360.8 |
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| CDS-3UTR TCA 90 bp | TTCTCCAACAATCCCTGTATGCGCCATCTTCCTTCGGCAGAGATGGTGGGTATGTCTGCCGGAGACTTGTaGGACTTGCCAAATGGGAAC | + |
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Preference number: 4 (lower is better) Translates to: FSNNPCMRHLPSAEMVGMSAGDL*DLPNGN Trigger: GTTCCCATTTGGCAAGTCTCACAAGTCTCCGGCAGA...CATACCCACCATCTCTGCCGAAGGAAGATGGCGCATACAGGGATTGTTGGAGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR TCA 90 bp | GGTATGCCCGTGCCATACTGCACAGACCTGCAGAGAGCAGTGCCGATGGACGGGGTTCTGACCACAAAATaGTTTTTGCAAGTGGTTCAT | + |
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Preference number: 4 (lower is better) Translates to: GMPVPYCTDLQRAVPMDGVLTTK*FLQVVH Trigger: ATGAACCACTTGCAAAAATCATTTTGTGGTCAGAAC...CCCGTCCATCGGCACTGCTCTCTGCAGGTCTGTGCAGTATGGCACGGGCATACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR TCA 90 bp | TTCTCCAACAATCCCTGTATGCGCCATCTTCCTTCGGCAGAGATGGTGGGTATGTCGGTCCTGTCGTTCTaGAACTTGCTGAGGAACTCG | + |
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Preference number: 4 (lower is better) Translates to: FSNNPCMRHLPSAEMVGMSVLSF*NLLRNS Trigger: CGAGTTCCTCAGCAAGTTTCAGAACGACAGGACCGA...CATACCCACCATCTCTGCCGAAGGAAGATGGCGCATACAGGGATTGTTGGAGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR GCA 90 bp | ATGGTGGGTATGCCCGTGCCATACTGCACAGACCTGCAGAGAGCAGTGCCGATGGTTCTTCACAATATCTaGCGGAGACTTGTGAGACTT | + |
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Preference number: 4 (lower is better) Translates to: MVGMPVPYCTDLQRAVPMVLHNI*RRLVRL Trigger: AAGTCTCACAAGTCTCCGGCAGATATTGTGAAGAAC...CATCGGCACTGCTCTCTGCAGGTCTGTGCAGTATGGCACGGGCATACCCACCAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR GCA 90 bp | GGTATGCCCGTGCCATACTGCACAGACCTGCAGAGAGCAGTGCCGATGGACGGGTTCTGTAGCCTTTTCTaGCTTTTTGTCAGAAATGTC | + |
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Preference number: 4 (lower is better) Translates to: GMPVPYCTDLQRAVPMDGFCSLF*LFVRNV Trigger: GACATTTCTGACAAAAAGGCAGAAAAGGCTACAGAA...CCCGTCCATCGGCACTGCTCTCTGCAGGTCTGTGCAGTATGGCACGGGCATACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR CCA 90 bp | ACAATCCCTGTATGCGCCATCTTCCTTCGGCAGAGATGGTGGGTATGCCCGTGCGAGGCTCCTTCTCATTaGTGCCGTACAGAATTTCTT | + |
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Preference number: 4 (lower is better) Translates to: TIPVCAIFLRQRWWVCPCEAPSH*CRTEFL Trigger: AAGAAATTCTGTACGGCACCAATGAGAAGGAGCCTC...GCACGGGCATACCCACCATCTCTGCCGAAGGAAGATGGCGCATACAGGGATTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR CCA 90 bp | AACAATCCCTGTATGCGCCATCTTCCTTCGGCAGAGATGGTGGGTATGCCCGTGTCGATGAGCTTGGTCTaGTTCTTGAGGAGGATGTCT | + |
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Preference number: 4 (lower is better) Translates to: NNPCMRHLPSAEMVGMPVSMSLV*FLRRMS Trigger: AGACATCCTCCTCAAGAACCAGACCAAGCTCATCGA...CACGGGCATACCCACCATCTCTGCCGAAGGAAGATGGCGCATACAGGGATTGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR TCA 90 bp | GCCTTCTCAGCCCTCAGCTTCCAATGTGTGAGTGACAGTTCCCTGACACACTGCACCCAGAAGCTTCAGTaGCTGTCTCTTTGTCACATA | + |
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Preference number: 4 (lower is better) Translates to: AFSALSFQCVSDSSLTHCTQKLQ*LSLCHI Trigger: TATGTGACAAAGAGACAGTCACTGAAGCTTCTGGGT...GCAGTGTGTCAGGGAACTGTCACTCACACATTGGAAGCTGAGGGCTGAGAAGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113360.8 |
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| CDS-3UTR TCA 90 bp | CAGCGATGTATCACCGTCTTTTCCCTAGACCACTCTCACTCTCATTTGCTTTCATGGCCACAAACACCTTaGACACGTGGAAGGCCTCGA | + |
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Preference number: 4 (lower is better) Translates to: QRCITVFSLDHSHSHLLSWPQTP*TRGRPR Trigger: TCGAGGCCTTCCACGTGTTCAAGGTGTTTGTGGCCA...TGAAAGCAAATGAGAGTGAGAGTGGTCTAGGGAAAAGACGGTGATACATCGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| 3UTR CAA 72 bp | CAGCTGAGTCTGCACACTACCCAGCTGAGAATGTCCTaGTCCAGAAGCCTGAATGCTTTCTCTATCTCTACT | + |
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Preference number: 4 (lower is better) Translates to: QLSLHTTQLRMS*SRSLNAFSIST Trigger: AGTAGAGATAGAGAAAGCATTCAGGCTTCTGGACAAGGACATTCTCAGCTGGGTAGTGTGCAGACTCAGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113360.8 |
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| 3UTR CAA 72 bp | CTAAGAGCTAGCTTGGCAAAGAGACACTCCTTCCACTaGGTGAAATGGCCACTCTGTCACCAAATCCTGACT | + |
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Preference number: 4 (lower is better) Translates to: LRASLAKRHSFH*VKWPLCHQILT Trigger: AGTCAGGATTTGGTGACAGAGTGGCCATTTCACCAAGTGGAAGGAGTGTCTCTTTGCCAAGCTAGCTCTTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113360.8 |
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| CDS-3UTR TCA 90 bp | AGCAGTAGTGCTCCCCATGAACCGATGAGAGTGCCTGATGCTGAGGAGCTGACAGTTCTGACCACAAAATaGTTTTTGCAAGTGGTTCAT | + |
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Preference number: 4 (lower is better) Translates to: SSSAPHEPMRVPDAEELTVLTTK*FLQVVH Trigger: ATGAACCACTTGCAAAAATCATTTTGTGGTCAGAAC...TGTCAGCTCCTCAGCATCAGGCACTCTCATCGGTTCATGGGGAGCACTACTGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR GCA 90 bp | CTTAGCACAGCTGAGTCTGCACACTACCCAGCTGAGAATGTCCTTGTCCAGAAGGTTCTTCACAATATCTaGCGGAGACTTGTGAGACTT | + |
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Preference number: 4 (lower is better) Translates to: LSTAESAHYPAENVLVQKVLHNI*RRLVRL Trigger: AAGTCTCACAAGTCTCCGGCAGATATTGTGAAGAAC...CTTCTGGACAAGGACATTCTCAGCTGGGTAGTGTGCAGACTCAGCTGTGCTAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113360.8 |
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| CDS-3UTR GCA 90 bp | AGCAGTAGTGCTCCCCATGAACCGATGAGAGTGCCTGATGCTGAGGAGCTGACATTCTGTAGCCTTTTCTaGCTTTTTGTCAGAAATGTC | + |
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Preference number: 4 (lower is better) Translates to: SSSAPHEPMRVPDAEELTFCSLF*LFVRNV Trigger: GACATTTCTGACAAAAAGGCAGAAAAGGCTACAGAA...TGTCAGCTCCTCAGCATCAGGCACTCTCATCGGTTCATGGGGAGCACTACTGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR TCA 90 bp | CAGACCTATATTTTCTGGAGTGGTTTTTCTGACTTGTATTCCTTGAAGGAAACCGCTTGGTCTGGTTCTTaGGGAGGATGTCTAGGATGG | + |
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Preference number: 4 (lower is better) Translates to: QTYIFWSGFSDLYSLKETAWSGS*GGCLGW Trigger: CCATCCTAGACATCCTCCTCAAGAACCAGACCAAGC...GGTTTCCTTCAAGGAATACAAGTCAGAAAAACCACTCCAGAAAATATAGGTCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113360.8 |
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| CDS-3UTR TCA 90 bp | CAGACCTATATTTTCTGGAGTGGTTTTTCTGACTTGTATTCCTTGAAGGAAACCTCGGTCCTGTCGTTCTaGAACTTGCTGAGGAACTCG | + |
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Preference number: 4 (lower is better) Translates to: QTYIFWSGFSDLYSLKETSVLSF*NLLRNS Trigger: CGAGTTCCTCAGCAAGTTTCAGAACGACAGGACCGA...GGTTTCCTTCAAGGAATACAAGTCAGAAAAACCACTCCAGAAAATATAGGTCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113360.8 |
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| CDS-3UTR CAA 90 bp | CAGACCTGCAGAGAGCAGTGCCGATGGACGGGCAGGTGTCAGCGATGTATCACCTGGATGTTGCGGCTCTaGTCTCGGAGGAGGTTCATC | + |
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Preference number: 5 (lower is better) Translates to: QTCREQCRWTGRCQRCITWMLRL*SRRRFI Trigger: GATGAACCTCCTCCGAGACAAGAGCCGCAACATCCA...GGTGATACATCGCTGACACCTGCCCGTCCATCGGCACTGCTCTCTGCAGGTCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR CAA 90 bp | CAGACCTGCAGAGAGCAGTGCCGATGGACGGGCAGGTGTCAGCGATGTATCACCTGCGTCTTGTTGGGGTaGGCCACAAACACCTTGAAC | + |
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Preference number: 5 (lower is better) Translates to: QTCREQCRWTGRCQRCITCVLLG*ATNTLN Trigger: GTTCAAGGTGTTTGTGGCCAACCCCAACAAGACGCA...GGTGATACATCGCTGACACCTGCCCGTCCATCGGCACTGCTCTCTGCAGGTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR CAA 90 bp | GGTATGCCCGTGCCATACTGCACAGACCTGCAGAGAGCAGTGCCGATGGACGGGGTCATAATTGTGAAGTaGTGTCTGTCCAACAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: GMPVPYCTDLQRAVPMDGVIIVK*CLSNSS Trigger: GCTGCTGTTGGACAGACACAACTTCACAATTATGAC...CCCGTCCATCGGCACTGCTCTCTGCAGGTCTGTGCAGTATGGCACGGGCATACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR CAA 90 bp | AGTGCTCCCCATGAACCGATGAGAGTGCCTGATGCTGAGGAGCTGACAGCCAGTAGGAACTCGATGAGCTaGGTCTGGTTCTTGAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: SAPHEPMRVPDAEELTASRNSMS*VWFLRR Trigger: CCTCCTCAAGAACCAGACCAAGCTCATCGAGTTCCT...ACTGGCTGTCAGCTCCTCAGCATCAGGCACTCTCATCGGTTCATGGGGAGCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR CAA 90 bp | GGTATGCCCGTGCCATACTGCACAGACCTGCAGAGAGCAGTGCCGATGGACGGGATGGCGACCAAATTTTaGGAAACTTCTTCTGTAGCC | + |
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Preference number: 5 (lower is better) Translates to: GMPVPYCTDLQRAVPMDGMATKF*ETSSVA Trigger: GGCTACAGAAGAAGTTTCCAAAAATTTGGTCGCCAT...CCCGTCCATCGGCACTGCTCTCTGCAGGTCTGTGCAGTATGGCACGGGCATACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR CAA 90 bp | AACAATCCCTGTATGCGCCATCTTCCTTCGGCAGAGATGGTGGGTATGCCCGTGAGGAACTCGATGAGCTaGGTCTGGTTCTTGAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: NNPCMRHLPSAEMVGMPVRNSMS*VWFLRR Trigger: CCTCCTCAAGAACCAGACCAAGCTCATCGAGTTCCT...CACGGGCATACCCACCATCTCTGCCGAAGGAAGATGGCGCATACAGGGATTGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR CAA 90 bp | AGAGTGCCTGATGCTGAGGAGCTGACAGCCAGTGCTGAGCTTGGATGGGACCGGGAACAAAATATTCTGTaGGGTGCAGATGTATTCAAC | + |
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Preference number: 5 (lower is better) Translates to: RVPDAEELTASAELGWDREQNIL*GADVFN Trigger: GTTGAATACATCTGCACCCAACAGAATATTTTGTTC...CCGGTCCCATCCAAGCTCAGCACTGGCTGTCAGCTCCTCAGCATCAGGCACTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR CAA 90 bp | CAGACCTGCAGAGAGCAGTGCCGATGGACGGGCAGGTGTCAGCGATGTATCACCGAACAAAATATTCTGTaGGGTGCAGATGTATTCAAC | + |
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Preference number: 5 (lower is better) Translates to: QTCREQCRWTGRCQRCITEQNIL*GADVFN Trigger: GTTGAATACATCTGCACCCAACAGAATATTTTGTTC...GGTGATACATCGCTGACACCTGCCCGTCCATCGGCACTGCTCTCTGCAGGTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR CAA 90 bp | TTCTCCAACAATCCCTGTATGCGCCATCTTCCTTCGGCAGAGATGGTGGGTATGAGCTTGGTCTGGTTCTaGAGGAGGATGTCTAGGATG | + |
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Preference number: 5 (lower is better) Translates to: FSNNPCMRHLPSAEMVGMSLVWF*RRMSRM Trigger: CATCCTAGACATCCTCCTCAAGAACCAGACCAAGCT...CATACCCACCATCTCTGCCGAAGGAAGATGGCGCATACAGGGATTGTTGGAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR CAA 90 bp | CTTAGCACAGCTGAGTCTGCACACTACCCAGCTGAGAATGTCCTTGTCCAGAAGAGCTTGGTCTGGTTCTaGAGGAGGATGTCTAGGATG | + |
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Preference number: 5 (lower is better) Translates to: LSTAESAHYPAENVLVQKSLVWF*RRMSRM Trigger: CATCCTAGACATCCTCCTCAAGAACCAGACCAAGCT...CTTCTGGACAAGGACATTCTCAGCTGGGTAGTGTGCAGACTCAGCTGTGCTAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113360.8 |
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| CDS-3UTR CAA 90 bp | CTCTCTGTGTTAGCCCAAGTGGAAACTGTTCTGTTGTCTCAAGTTCTAAGAGCTTGGATGTTGCGGCTCTaGTCTCGGAGGAGGTTCATC | + |
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Preference number: 5 (lower is better) Translates to: LSVLAQVETVLLSQVLRAWMLRL*SRRRFI Trigger: GATGAACCTCCTCCGAGACAAGAGCCGCAACATCCA...AGCTCTTAGAACTTGAGACAACAGAACAGTTTCCACTTGGGCTAACACAGAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113360.8 |
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| CDS-3UTR CAA 90 bp | GACACAGAGATCAAGGGAAAGAAAGACCACGTGCGCTCTAATGTGCAAGCAGCAATGGCGACCAAATTTTaGGAAACTTCTTCTGTAGCC | + |
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Preference number: 5 (lower is better) Translates to: DTEIKGKKDHVRSNVQAAMATKF*ETSSVA Trigger: GGCTACAGAAGAAGTTTCCAAAAATTTGGTCGCCAT...TGCTGCTTGCACATTAGAGCGCACGTGGTCTTTCTTTCCCTTGATCTCTGTGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS-3UTR CAA 90 bp | CAGACCTATATTTTCTGGAGTGGTTTTTCTGACTTGTATTCCTTGAAGGAAACCTGCGTCTTGTTGGGGTaGGCCACAAACACCTTGAAC | + |
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Preference number: 5 (lower is better) Translates to: QTYIFWSGFSDLYSLKETCVLLG*ATNTLN Trigger: GTTCAAGGTGTTTGTGGCCAACCCCAACAAGACGCA...GGTTTCCTTCAAGGAATACAAGTCAGAAAAACCACTCCAGAAAATATAGGTCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000113360.8 |
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| CDS CCA 72 bp | GCCACAAACACCTTGAACACGTGGAAGGCCTCGAACTaGATGTTGCGGCTCTTGTCTCGGAGGAGGTTCATC | + |
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Preference number: 6 (lower is better) Translates to: ATNTLNTWKASN*MLRLLSRRRFI Trigger: GATGAACCTCCTCCGAGACAAGAGCCGCAACATCCAGTTCGAGGCCTTCCACGTGTTCAAGGTGTTTGTGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS CAA 90 bp | TGGTTCTTGAGGAGGATGTCTAGGATGGGCTGCGTCTTGTTGGGGTaGGCCACAAACACCTTGAACACGTGGAAGGCCTCGAACTGGATG | + |
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Preference number: 6 (lower is better) Translates to: WFLRRMSRMGCVLLG*ATNTLNTWKASNWM Trigger: CATCCAGTTCGAGGCCTTCCACGTGTTCAAGGTGTTTGTGGCCAACCCCAACAAGACGCAGCCCATCCTAGACATCCTCCTCAAGAACCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS TCA 72 bp | TCGTCGTTGAACTGCTCGTCCTCGGTCCTGTCGTTCTaGAACTTGCTGAGGAACTCGATGAGCTTGGTCTGG | + |
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Preference number: 6 (lower is better) Translates to: SSLNCSSSVLSF*NLLRNSMSLVW Trigger: CCAGACCAAGCTCATCGAGTTCCTCAGCAAGTTTCAGAACGACAGGACCGAGGACGAGCAGTTCAACGACGA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS CCA 72 bp | GTCTTGTTGGGGTTGGCCACAAACACCTTGAACACGTaGAAGGCCTCGAACTGGATGTTGCGGCTCTTGTCT | + |
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Preference number: 6 (lower is better) Translates to: VLLGLATNTLNT*KASNWMLRLLS Trigger: AGACAAGAGCCGCAACATCCAGTTCGAGGCCTTCCACGTGTTCAAGGTGTTTGTGGCCAACCCCAACAAGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 |
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| CDS GCA 72 bp | AACAGCCATGCTCTCCTTCAAGTTCTTCACAATATCTaGCGGAGACTTGTGAGACTTGCCAAATGGGAACGG | + |
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Preference number: 6 (lower is better) Translates to: NSHALLQVLHNI*RRLVRLAKWER Trigger: CCGTTCCCATTTGGCAAGTCTCACAAGTCTCCGGCAGATATTGTGAAGAACTTGAAGGAGAGCATGGCTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000097666.4 ENSMUST00000113360.8 ENSMUST00000126962.3 ENSMUST00000130754.8 |
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