Pregenerated sensors for CAAP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028578Ensembl transcript IDs: ENSMUST00000030313.9
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CGTGATTTATGGAACTATACATCAGACCTTCTCACAATGACATCAAACAAAACCCTTTCTCCTTCCTGTTaGCTTTTAAGATACCAAGTT | + |
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Preference number: 2 (lower is better) Translates to: RDLWNYTSDLLTMTSNKTLSPSC*LLRYQV Trigger: AACTTGGTATCTTAAAAGCCAACAGGAAGGAGAAAG...GGTTTTGTTTGATGTCATTGTGAGAAGGTCTGATGTATAGTTCCATAAATCACG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| 3UTR-3UTR CAA 90 bp | CAAAACAGTTCATTAGGTTTCGCTAGGAAATTCACATCCACAAAAGGAATCCTCTCTTTCTCCTTCCTGTaGGCTTTTAAGATACCAAGT | + |
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Preference number: 3 (lower is better) Translates to: QNSSLGFARKFTSTKGILSFSFL*AFKIPS Trigger: ACTTGGTATCTTAAAAGCCAACAGGAAGGAGAAAGA...GAGGATTCCTTTTGTGGATGTGAATTTCCTAGCGAAACCTAATGAACTGTTTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| 3UTR-3UTR CAA 90 bp | CGTGATTTATGGAACTATACATCAGACCTTCTCACAATGACATCAAACAAAACCTGTCAGAAAGACTTGTaGCTGGAATTTAACATGAAC | + |
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Preference number: 3 (lower is better) Translates to: RDLWNYTSDLLTMTSNKTCQKDL*LEFNMN Trigger: GTTCATGTTAAATTCCAGCAACAAGTCTTTCTGACA...GGTTTTGTTTGATGTCATTGTGAGAAGGTCTGATGTATAGTTCCATAAATCACG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| 3UTR TCA 72 bp | GTGATTTATGGAACTATACATCAGACCTTCTCACAATaGCATCAAACAAAACCCTGTATCATATTGTCCCTT | + |
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Preference number: 3 (lower is better) Translates to: VIYGTIHQTFSQ*HQTKPCIILSL Trigger: AAGGGACAATATGATACAGGGTTTTGTTTGATGTCATTGTGAGAAGGTCTGATGTATAGTTCCATAAATCAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR GCA 90 bp | CAAAACAGTTCATTAGGTTTCGCTAGGAAATTCACATCCACAAAAGGAATCCTCTGCGAGCGACGCGGCTaGCTCCTGCCCGCTCCGCTT | + |
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Preference number: 4 (lower is better) Translates to: QNSSLGFARKFTSTKGILCERRG*LLPAPL Trigger: AAGCGGAGCGGGCAGGAGGCAGCCGCGTCGCTCGCA...GAGGATTCCTTTTGTGGATGTGAATTTCCTAGCGAAACCTAATGAACTGTTTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR GCA 90 bp | CAAAACAGTTCATTAGGTTTCGCTAGGAAATTCACATCCACAAAAGGAATCCTCCCTGCCCGCTCCGCTTaGGCCGCTTTTCTCGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: QNSSLGFARKFTSTKGILPARSA*AAFLGK Trigger: CTTCCCGAGAAAAGCGGCGCAAGCGGAGCGGGCAGG...GAGGATTCCTTTTGTGGATGTGAATTTCCTAGCGAAACCTAATGAACTGTTTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR CCA 90 bp | CGTGATTTATGGAACTATACATCAGACCTTCTCACAATGACATCAAACAAAACCGGGAGCCCGAGACGCTaGAGGACGAATCGGTGCTCC | + |
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Preference number: 4 (lower is better) Translates to: RDLWNYTSDLLTMTSNKTGSPRR*RTNRCS Trigger: GGAGCACCGATTCGTCCTCCAGCGTCTCGGGCTCCC...GGTTTTGTTTGATGTCATTGTGAGAAGGTCTGATGTATAGTTCCATAAATCACG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR CCA 90 bp | CAAAACAGTTCATTAGGTTTCGCTAGGAAATTCACATCCACAAAAGGAATCCTCCTGAACGTCTTCTGCTaGAGGAACAGTCAGGGTGGC | + |
|
Preference number: 4 (lower is better) Translates to: QNSSLGFARKFTSTKGILLNVFC*RNSQGG Trigger: GCCACCCTGACTGTTCCTCCAGCAGAAGACGTTCAG...GAGGATTCCTTTTGTGGATGTGAATTTCCTAGCGAAACCTAATGAACTGTTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR GCA 90 bp | CAAAACAGTTCATTAGGTTTCGCTAGGAAATTCACATCCACAAAAGGAATCCTCAGGCTGAACGTCTTCTaGTGGAGGAACAGTCAGGGT | + |
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Preference number: 4 (lower is better) Translates to: QNSSLGFARKFTSTKGILRLNVF*WRNSQG Trigger: ACCCTGACTGTTCCTCCAGCAGAAGACGTTCAGCCT...GAGGATTCCTTTTGTGGATGTGAATTTCCTAGCGAAACCTAATGAACTGTTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR CCA 90 bp | CAAAACAGTTCATTAGGTTTCGCTAGGAAATTCACATCCACAAAAGGAATCCTCGAGGAACAGTCAGGGTaGCCACTTTGGGTTCCTTTG | + |
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Preference number: 4 (lower is better) Translates to: QNSSLGFARKFTSTKGILEEQSG*PLWVPL Trigger: CAAAGGAACCCAAAGTGGCCACCCTGACTGTTCCTC...GAGGATTCCTTTTGTGGATGTGAATTTCCTAGCGAAACCTAATGAACTGTTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR CCA 90 bp | CAAAACAGTTCATTAGGTTTCGCTAGGAAATTCACATCCACAAAAGGAATCCTCCTGGACTGTATTTTCTaGGACCTCGGAAGCAGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: QNSSLGFARKFTSTKGILLDCIF*DLGSSS Trigger: ACTGCTGCTTCCGAGGTCCCAGAAAATACAGTCCAG...GAGGATTCCTTTTGTGGATGTGAATTTCCTAGCGAAACCTAATGAACTGTTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR CCA 90 bp | CGTGATTTATGGAACTATACATCAGACCTTCTCACAATGACATCAAACAAAACCCACTTTGGGTTCCTTTaGGCTAGACTCTGCCAGTCC | + |
|
Preference number: 4 (lower is better) Translates to: RDLWNYTSDLLTMTSNKTHFGFL*ARLCQS Trigger: GGACTGGCAGAGTCTAGCCCAAAGGAACCCAAAGTG...GGTTTTGTTTGATGTCATTGTGAGAAGGTCTGATGTATAGTTCCATAAATCACG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR TCA 90 bp | CAAAACAGTTCATTAGGTTTCGCTAGGAAATTCACATCCACAAAAGGAATCCTCACACAGGTATCTTGCTaGCTGATTAAATCAGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: QNSSLGFARKFTSTKGILTQVSC*LIKSGA Trigger: GGCACCTGATTTAATCAGTCAGCAAGATACCTGTGT...GAGGATTCCTTTTGTGGATGTGAATTTCCTAGCGAAACCTAATGAACTGTTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR TCA 90 bp | CAAAACAGTTCATTAGGTTTCGCTAGGAAATTCACATCCACAAAAGGAATCCTCGTTCTCTCTCAGGGATaGAGTAGAATCTACACAGGT | + |
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Preference number: 4 (lower is better) Translates to: QNSSLGFARKFTSTKGILVLSQG*SRIYTG Trigger: ACCTGTGTAGATTCTACTTCATCCCTGAGAGAGAAC...GAGGATTCCTTTTGTGGATGTGAATTTCCTAGCGAAACCTAATGAACTGTTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR GCA 90 bp | CAAAACAGTTCATTAGGTTTCGCTAGGAAATTCACATCCACAAAAGGAATCCTCCTTACAGCCATCATCTaGCTCCTCTTCCATATCAGA | + |
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Preference number: 4 (lower is better) Translates to: QNSSLGFARKFTSTKGILLTAII*LLFHIR Trigger: TCTGATATGGAAGAGGAGGCAGATGATGGCTGTAAG...GAGGATTCCTTTTGTGGATGTGAATTTCCTAGCGAAACCTAATGAACTGTTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR GCA 90 bp | CAAAACAGTTCATTAGGTTTCGCTAGGAAATTCACATCCACAAAAGGAATCCTCCTTTGGGCTAGACTCTaGCAGTCCCAAAATCTCATT | + |
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Preference number: 4 (lower is better) Translates to: QNSSLGFARKFTSTKGILLWARL*QSQNLI Trigger: AATGAGATTTTGGGACTGGCAGAGTCTAGCCCAAAG...GAGGATTCCTTTTGTGGATGTGAATTTCCTAGCGAAACCTAATGAACTGTTTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR TCA 90 bp | CGTGATTTATGGAACTATACATCAGACCTTCTCACAATGACATCAAACAAAACCAGGTATCTTGCTGACTaGTTAAATCAGGTGCCACCT | + |
|
Preference number: 4 (lower is better) Translates to: RDLWNYTSDLLTMTSNKTRYLAD*LNQVPP Trigger: AGGTGGCACCTGATTTAATCAGTCAGCAAGATACCT...GGTTTTGTTTGATGTCATTGTGAGAAGGTCTGATGTATAGTTCCATAAATCACG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR GCA 90 bp | CAAAACAGTTCATTAGGTTTCGCTAGGAAATTCACATCCACAAAAGGAATCCTCCATGAGAGCCTTAATTaGTCTTGCCCTCATTTCAAG | + |
|
Preference number: 4 (lower is better) Translates to: QNSSLGFARKFTSTKGILHESLN*SCPHFK Trigger: CTTGAAATGAGGGCAAGAGCAATTAAGGCTCTCATG...GAGGATTCCTTTTGTGGATGTGAATTTCCTAGCGAAACCTAATGAACTGTTTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR TCA 90 bp | CGTGATTTATGGAACTATACATCAGACCTTCTCACAATGACATCAAACAAAACCCCCTTTGCCTTGTTTTaGTTCCAAAACTTCTGGTTG | + |
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Preference number: 4 (lower is better) Translates to: RDLWNYTSDLLTMTSNKTPFALF*FQNFWL Trigger: CAACCAGAAGTTTTGGAATCAAAACAAGGCAAAGGG...GGTTTTGTTTGATGTCATTGTGAGAAGGTCTGATGTATAGTTCCATAAATCACG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR GCA 90 bp | CAAAACAGTTCATTAGGTTTCGCTAGGAAATTCACATCCACAAAAGGAATCCTCGCTGTCATAAGCATCTaGATTTATACTGAGTACATC | + |
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Preference number: 4 (lower is better) Translates to: QNSSLGFARKFTSTKGILAVISI*IYTEYI Trigger: GATGTACTCAGTATAAATGCAGATGCTTATGACAGC...GAGGATTCCTTTTGTGGATGTGAATTTCCTAGCGAAACCTAATGAACTGTTTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR GCA 90 bp | CGTGATTTATGGAACTATACATCAGACCTTCTCACAATGACATCAAACAAAACCTCTTCAAGATCACTGTaGTCTGCCAAGAATAATTCT | + |
|
Preference number: 4 (lower is better) Translates to: RDLWNYTSDLLTMTSNKTSSRSL*SAKNNS Trigger: AGAATTATTCTTGGCAGAGCACAGTGATCTTGAAGA...GGTTTTGTTTGATGTCATTGTGAGAAGGTCTGATGTATAGTTCCATAAATCACG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR GCA 90 bp | CGTGATTTATGGAACTATACATCAGACCTTCTCACAATGACATCAAACAAAACCATGATACAGAAGCATTaGTGCAGCATTTCCTTTTTG | + |
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Preference number: 4 (lower is better) Translates to: RDLWNYTSDLLTMTSNKTMIQKH*CSISFL Trigger: CAAAAAGGAAATGCTGCAGCAATGCTTCTGTATCAT...GGTTTTGTTTGATGTCATTGTGAGAAGGTCTGATGTATAGTTCCATAAATCACG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR GCA 90 bp | CGTGATTTATGGAACTATACATCAGACCTTCTCACAATGACATCAAACAAAACCCACTATCTTCCCCTTTaGCTTGTTTTGATTCCAAAA | + |
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Preference number: 4 (lower is better) Translates to: RDLWNYTSDLLTMTSNKTHYLPL*LVLIPK Trigger: TTTTGGAATCAAAACAAGGCAAAGGGGAAGATAGTG...GGTTTTGTTTGATGTCATTGTGAGAAGGTCTGATGTATAGTTCCATAAATCACG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS GCA 90 bp | TGGTTTCCTGCTGCAGGGAGCCCGAGACGCTGGAGGACGAATCGGTaGTCCTCCGCTTTCGGCGCTCGCTTCGTTCCGCGCCGCCCGCCA | + |
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Preference number: 5 (lower is better) Translates to: WFPAAGSPRRWRTNR*SSAFGARFVPRRPP Trigger: TGGCGGGCGGCGCGGAACGAAGCGAGCGCCGAAAGCGGAGGAGCACCGATTCGTCCTCCAGCGTCTCGGGCTCCCTGCAGCAGGAAACCA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS CCA 90 bp | TTGGTAAAAGATACTTGGTTTCCTGCTGCAGGGAGCCCGAGACGCTaGAGGACGAATCGGTGCTCCTCCGCTTTCGGCGCTCGCTTCGTT | + |
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Preference number: 5 (lower is better) Translates to: LVKDTWFPAAGSPRR*RTNRCSSAFGARFV Trigger: AACGAAGCGAGCGCCGAAAGCGGAGGAGCACCGATTCGTCCTCCAGCGTCTCGGGCTCCCTGCAGCAGGAAACCAAGTATCTTTTACCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS TCA 90 bp | GCCCTCATTTCAAGTTCTAGAAGCTCCAGTTGCTGCGCAGAAGGCTaGACGTCTTCTGCTGGAGGAACAGTCAGGGTGGCCACTTTGGGT | + |
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Preference number: 5 (lower is better) Translates to: ALISSSRSSSCCAEG*TSSAGGTVRVATLG Trigger: ACCCAAAGTGGCCACCCTGACTGTTCCTCCAGCAGAAGACGTTCAGCCTTCTGCGCAGCAACTGGAGCTTCTAGAACTTGAAATGAGGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR CAA 90 bp | CAAAACAGTTCATTAGGTTTCGCTAGGAAATTCACATCCACAAAAGGAATCCTCGTCAGGGTGGCCACTTaGGGTTCCTTTGGGCTAGAC | + |
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Preference number: 5 (lower is better) Translates to: QNSSLGFARKFTSTKGILVRVAT*GSFGLD Trigger: GTCTAGCCCAAAGGAACCCAAAGTGGCCACCCTGAC...GAGGATTCCTTTTGTGGATGTGAATTTCCTAGCGAAACCTAATGAACTGTTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS TCA 90 bp | TTGTTCTCTCTCAGGGATGAAGTAGAATCTACACAGGTATCTTGCTaGCTGATTAAATCAGGTGCCACCTTACAGCCATCATCTGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: LFSLRDEVESTQVSC*LIKSGATLQPSSAS Trigger: GGAGGCAGATGATGGCTGTAAGGTGGCACCTGATTTAATCAGTCAGCAAGATACCTGTGTAGATTCTACTTCATCCCTGAGAGAGAACAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS TCA 90 bp | TGCTTGGCCCTTCTATATCGCTGTCATAAGCATCTGCATTTATACTaGGTACATCACTATCTTCCCCTTTGCCTTGTTTTGATTCCAAAA | + |
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Preference number: 5 (lower is better) Translates to: CLALLYRCHKHLHLY*VHHYLPLCLVLIPK Trigger: TTTTGGAATCAAAACAAGGCAAAGGGGAAGATAGTGATGTACTCAGTATAAATGCAGATGCTTATGACAGCGATATAGAAGGGCCAAGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR CAA 90 bp | CAAAACAGTTCATTAGGTTTCGCTAGGAAATTCACATCCACAAAAGGAATCCTCCCCCTTTGCCTTGTTTaGATTCCAAAACTTCTGGTT | + |
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Preference number: 5 (lower is better) Translates to: QNSSLGFARKFTSTKGILPLCLV*IPKLLV Trigger: AACCAGAAGTTTTGGAATCAAAACAAGGCAAAGGGG...GAGGATTCCTTTTGTGGATGTGAATTTCCTAGCGAAACCTAATGAACTGTTTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS GCA 90 bp | TTTAAGGAGACATTCAGATCCAGTCCACCTTCTTCAAGATCACTGTaGTCTGCCAAGAATAATTCTTTTTCCAGACTTGGTAAAAGATAC | + |
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Preference number: 5 (lower is better) Translates to: FKETFRSSPPSSRSL*SAKNNSFSRLGKRY Trigger: GTATCTTTTACCAAGTCTGGAAAAAGAATTATTCTTGGCAGAGCACAGTGATCTTGAAGAAGGTGGACTGGATCTGAATGTCTCCTTAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR CAA 90 bp | CAAAACAGTTCATTAGGTTTCGCTAGGAAATTCACATCCACAAAAGGAATCCTCTATGATACAGAAGCATaGCTGCAGCATTTCCTTTTT | + |
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Preference number: 5 (lower is better) Translates to: QNSSLGFARKFTSTKGILYDTEA*LQHFLF Trigger: AAAAAGGAAATGCTGCAGCAATGCTTCTGTATCATA...GAGGATTCCTTTTGTGGATGTGAATTTCCTAGCGAAACCTAATGAACTGTTTTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR CAA 90 bp | CGTGATTTATGGAACTATACATCAGACCTTCTCACAATGACATCAAACAAAACCAAAACTTCTGGTTGTTaGTTCTCTCTCAGGGATGAA | + |
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Preference number: 5 (lower is better) Translates to: RDLWNYTSDLLTMTSNKTKTSGC*FSLRDE Trigger: TTCATCCCTGAGAGAGAACAAACAACCAGAAGTTTT...GGTTTTGTTTGATGTCATTGTGAGAAGGTCTGATGTATAGTTCCATAAATCACG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR CAA 90 bp | CGTGATTTATGGAACTATACATCAGACCTTCTCACAATGACATCAAACAAAACCTCACTATCTTCCCCTTaGCCTTGTTTTGATTCCAAA | + |
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Preference number: 5 (lower is better) Translates to: RDLWNYTSDLLTMTSNKTSLSSP*PCFDSK Trigger: TTTGGAATCAAAACAAGGCAAAGGGGAAGATAGTGA...GGTTTTGTTTGATGTCATTGTGAGAAGGTCTGATGTATAGTTCCATAAATCACG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS-3UTR CAA 90 bp | CGTGATTTATGGAACTATACATCAGACCTTCTCACAATGACATCAAACAAAACCAAGAATCTTCAAGATTaGTTTTTCAGACAGGAGCTC | + |
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Preference number: 5 (lower is better) Translates to: RDLWNYTSDLLTMTSNKTKNLQD*FFRQEL Trigger: GAGCTCCTGTCTGAAAAACAAATCTTGAAGATTCTT...GGTTTTGTTTGATGTCATTGTGAGAAGGTCTGATGTATAGTTCCATAAATCACG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS GCA 72 bp | CACGGGCACCAGGTCCGGGGCTGCGAGCGACGCGGCTaGCTCCTGCCCGCTCCGCTTGCGCCGCTTTTCTCG | + |
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Preference number: 6 (lower is better) Translates to: HGHQVRGCERRG*LLPAPLAPLFS Trigger: CGAGAAAAGCGGCGCAAGCGGAGCGGGCAGGAGGCAGCCGCGTCGCTCGCAGCCCCGGACCTGGTGCCCGTG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS GCA 72 bp | ACCAGGTCCGGGGCTGCGAGCGACGCGGCTGCCTCCTaGCCGCTCCGCTTGCGCCGCTTTTCTCGGGAAGAC | + |
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Preference number: 6 (lower is better) Translates to: TRSGAASDAAAS*PLRLRRFSRED Trigger: GTCTTCCCGAGAAAAGCGGCGCAAGCGGAGCGGGCAGGAGGCAGCCGCGTCGCTCGCAGCCCCGGACCTGGT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS GCA 72 bp | GCTGCAGGGAGCCCGAGACGCTGGAGGACGAATCGGTaGTCCTCCGCTTTCGGCGCTCGCTTCGTTCCGCGC | + |
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Preference number: 6 (lower is better) Translates to: AAGSPRRWRTNR*SSAFGARFVPR Trigger: GCGCGGAACGAAGCGAGCGCCGAAAGCGGAGGAGCACCGATTCGTCCTCCAGCGTCTCGGGCTCCCTGCAGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS CAA 72 bp | GCTGCGAGCGACGCGGCTGCCTCCTGCCCGCTCCGCTaGCGCCGCTTTTCTCGGGAAGACTTCTTCCCCGTC | + |
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Preference number: 6 (lower is better) Translates to: AASDAAASCPLR*RRFSREDFFPV Trigger: GACGGGGAAGAAGTCTTCCCGAGAAAAGCGGCGCAAGCGGAGCGGGCAGGAGGCAGCCGCGTCGCTCGCAGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS GCA 72 bp | CTGCGAGCGACGCGGCTGCCTCCTGCCCGCTCCGCTTaGGCCGCTTTTCTCGGGAAGACTTCTTCCCCGTCA | + |
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Preference number: 6 (lower is better) Translates to: LRATRLPPARSA*AAFLGKTSSPS Trigger: TGACGGGGAAGAAGTCTTCCCGAGAAAAGCGGCGCAAGCGGAGCGGGCAGGAGGCAGCCGCGTCGCTCGCAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS CCA 72 bp | GATACTTGGTTTCCTGCTGCAGGGAGCCCGAGACGCTaGAGGACGAATCGGTGCTCCTCCGCTTTCGGCGCT | + |
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Preference number: 6 (lower is better) Translates to: DTWFPAAGSPRR*RTNRCSSAFGA Trigger: AGCGCCGAAAGCGGAGGAGCACCGATTCGTCCTCCAGCGTCTCGGGCTCCCTGCAGCAGGAAACCAAGTATC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS CAA 72 bp | GGGTGGCGGTGGCGGCGGCAGCAGCTTCGTCAATGCTaGGCCCTTCTATATCGCTGTCATAAGCATCTGCAT | + |
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Preference number: 6 (lower is better) Translates to: GWRWRRQQLRQC*ALLYRCHKHLH Trigger: ATGCAGATGCTTATGACAGCGATATAGAAGGGCCAAGCATTGACGAAGCTGCTGCCGCCGCCACCGCCACCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS GCA 72 bp | AAGCTCCAGTTGCTGCGCAGAAGGCTGAACGTCTTCTaGTGGAGGAACAGTCAGGGTGGCCACTTTGGGTTC | + |
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Preference number: 6 (lower is better) Translates to: KLQLLRRRLNVF*WRNSQGGHFGF Trigger: GAACCCAAAGTGGCCACCCTGACTGTTCCTCCAGCAGAAGACGTTCAGCCTTCTGCGCAGCAACTGGAGCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS CCA 72 bp | GGTGGCGGTGGCGGCGGCAGCAGCTTCGTCAATGCTTaGCCCTTCTATATCGCTGTCATAAGCATCTGCATT | + |
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Preference number: 6 (lower is better) Translates to: GGGGGGSSFVNA*PFYIAVISICI Trigger: AATGCAGATGCTTATGACAGCGATATAGAAGGGCCAAGCATTGACGAAGCTGCTGCCGCCGCCACCGCCACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS TCA 72 bp | TCAAGTTCTAGAAGCTCCAGTTGCTGCGCAGAAGGCTaGACGTCTTCTGCTGGAGGAACAGTCAGGGTGGCC | + |
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Preference number: 6 (lower is better) Translates to: SSSRSSSCCAEG*TSSAGGTVRVA Trigger: GGCCACCCTGACTGTTCCTCCAGCAGAAGACGTTCAGCCTTCTGCGCAGCAACTGGAGCTTCTAGAACTTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS GCA 72 bp | TTTTCCAGACTTGGTAAAAGATACTTGGTTTCCTGCTaGAGGGAGCCCGAGACGCTGGAGGACGAATCGGTG | + |
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Preference number: 6 (lower is better) Translates to: FSRLGKRYLVSC*REPETLEDESV Trigger: CACCGATTCGTCCTCCAGCGTCTCGGGCTCCCTGCAGCAGGAAACCAAGTATCTTTTACCAAGTCTGGAAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS CCA 72 bp | TGGAGGAACAGTCAGGGTGGCCACTTTGGGTTCCTTTaGGCTAGACTCTGCCAGTCCCAAAATCTCATTCAC | + |
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Preference number: 6 (lower is better) Translates to: WRNSQGGHFGFL*ARLCQSQNLIH Trigger: GTGAATGAGATTTTGGGACTGGCAGAGTCTAGCCCAAAGGAACCCAAAGTGGCCACCCTGACTGTTCCTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS GCA 72 bp | TCTTTTTCCAGACTTGGTAAAAGATACTTGGTTTCCTaGTGCAGGGAGCCCGAGACGCTGGAGGACGAATCG | + |
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Preference number: 6 (lower is better) Translates to: SFSRLGKRYLVS*CREPETLEDES Trigger: CGATTCGTCCTCCAGCGTCTCGGGCTCCCTGCAGCAGGAAACCAAGTATCTTTTACCAAGTCTGGAAAAAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS CAA 90 bp | CTTCAAGATCACTGTGCTCTGCCAAGAATAATTCTTTTTCCAGACTaGGTAAAAGATACTTGGTTTCCTGCTGCAGGGAGCCCGAGACGC | + |
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Preference number: 6 (lower is better) Translates to: LQDHCALPRIILFPD*VKDTWFPAAGSPRR Trigger: GCGTCTCGGGCTCCCTGCAGCAGGAAACCAAGTATCTTTTACCAAGTCTGGAAAAAGAATTATTCTTGGCAGAGCACAGTGATCTTGAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS TCA 72 bp | CTCAGGGATGAAGTAGAATCTACACAGGTATCTTGCTaGCTGATTAAATCAGGTGCCACCTTACAGCCATCA | + |
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Preference number: 6 (lower is better) Translates to: LRDEVESTQVSC*LIKSGATLQPS Trigger: TGATGGCTGTAAGGTGGCACCTGATTTAATCAGTCAGCAAGATACCTGTGTAGATTCTACTTCATCCCTGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS TCA 72 bp | TTCCAAAACTTCTGGTTGTTTGTTCTCTCTCAGGGATaGAGTAGAATCTACACAGGTATCTTGCTGACTGAT | + |
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Preference number: 6 (lower is better) Translates to: FQNFWLFVLSQG*SRIYTGILLTD Trigger: ATCAGTCAGCAAGATACCTGTGTAGATTCTACTTCATCCCTGAGAGAGAACAAACAACCAGAAGTTTTGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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| CDS CAA 72 bp | CCTTTGCCTTGTTTTGATTCCAAAACTTCTGGTTGTTaGTTCTCTCTCAGGGATGAAGTAGAATCTACACAG | + |
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Preference number: 6 (lower is better) Translates to: PLPCFDSKTSGC*FSLRDEVESTQ Trigger: CTGTGTAGATTCTACTTCATCCCTGAGAGAGAACAAACAACCAGAAGTTTTGGAATCAAAACAAGGCAAAGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030313.9 |
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