Pregenerated sensors for C8G (Mus musculus)
Ensembl gene IDs: ENSMUSG00000015083Ensembl transcript IDs: ENSMUST00000015227.4, ENSMUST00000040042.11
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | GGTGCTTCTGGGGACAGAAAGGAGAGACTCCAAGAGTaGATTCAGGATGCTCAGAACTCTCTGAGGGTAGCC | + |
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Preference number: 3 (lower is better) Translates to: GASGDRKERLQE*IQDAQNSLRVA Trigger: GGCTACCCTCAGAGAGTTCTGAGCATCCTGAATGCACTCTTGGAGTCTCTCCTTTCTGTCCCCAGAAGCACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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| 3UTR GCA 72 bp | GGACAGAAAGGAGAGACTCCAAGAGTGCATTCAGGATaGTCAGAACTCTCTGAGGGTAGCCCACTGTCCACA | + |
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Preference number: 3 (lower is better) Translates to: GQKGETPRVHSG*SELSEGSPLST Trigger: TGTGGACAGTGGGCTACCCTCAGAGAGTTCTGAGCATCCTGAATGCACTCTTGGAGTCTCTCCTTTCTGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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| CDS-3UTR GCA 90 bp | AAGGGGTGCTTCTGGGGACAGAAAGGAGAGACTCCAAGAGTGCATTCAGGATGCCCCTGGGGAGCTGCGTaGAATGTGGTGGCCTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: KGCFWGQKGETPRVHSGCPWGAA*NVVASA Trigger: AGCTGAGGCCACCACATTGCACGCAGCTCCCCAGGG...GCATCCTGAATGCACTCTTGGAGTCTCTCCTTTCTGTCCCCAGAAGCACCCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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| CDS-3UTR GCA 90 bp | GAGAGACTCCAAGAGTGCATTCAGGATGCTCAGAACTCTCTGAGGGTAGCCCACCAGGAGCCATGTCCCTaGAAACTGCCTCCCTGTGCC | + |
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Preference number: 4 (lower is better) Translates to: ERLQECIQDAQNSLRVAHQEPCP*KLPPCA Trigger: GGCACAGGGAGGCAGTTTGCAGGGACATGGCTCCTG...GTGGGCTACCCTCAGAGAGTTCTGAGCATCCTGAATGCACTCTTGGAGTCTCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000015227.4 |
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| CDS-3UTR GCA 90 bp | GTGCTTCTGGGGACAGAAAGGAGAGACTCCAAGAGTGCATTCAGGATGCTCAGAGCTGACAGCCATAGCTaGACCCTGGGGAGCTGCGTG | + |
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Preference number: 4 (lower is better) Translates to: VLLGTERRDSKSAFRMLRADSHS*TLGSCV Trigger: CACGCAGCTCCCCAGGGTGCAGCTATGGCTGTCAGC...TCTGAGCATCCTGAATGCACTCTTGGAGTCTCTCCTTTCTGTCCCCAGAAGCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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| CDS-3UTR CCA 90 bp | GAGAGACTCCAAGAGTGCATTCAGGATGCTCAGAACTCTCTGAGGGTAGCCCACGCCATAGCTGCACCCTaGGGAGCTGCGTGCAATGTG | + |
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Preference number: 4 (lower is better) Translates to: ERLQECIQDAQNSLRVAHAIAAP*GAACNV Trigger: CACATTGCACGCAGCTCCCCAGGGTGCAGCTATGGC...GTGGGCTACCCTCAGAGAGTTCTGAGCATCCTGAATGCACTCTTGGAGTCTCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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| CDS-3UTR GCA 90 bp | GGACAGAAAGGAGAGACTCCAAGAGTGCATTCAGGATGCTCAGAACTCTCTGAGCCCTGGGGAGCTGCGTaGAATGTGGTGGCCTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: GQKGETPRVHSGCSELSEPWGAA*NVVASA Trigger: AGCTGAGGCCACCACATTGCACGCAGCTCCCCAGGG...CTCAGAGAGTTCTGAGCATCCTGAATGCACTCTTGGAGTCTCTCCTTTCTGTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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| CDS-3UTR TCA 90 bp | GAGAGACTCCAAGAGTGCATTCAGGATGCTCAGAACTCTCTGAGGGTAGCCCACCTGTCAAGAGCAGGGTaGAGAACAACACAGCCCCTG | + |
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Preference number: 4 (lower is better) Translates to: ERLQECIQDAQNSLRVAHLSRAG*RTTQPL Trigger: CAGGGGCTGTGTTGTTCTTCACCCTGCTCTTGACAG...GTGGGCTACCCTCAGAGAGTTCTGAGCATCCTGAATGCACTCTTGGAGTCTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040042.11 |
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| CDS-3UTR CCA 90 bp | TTCTGGGGACAGAAAGGAGAGACTCCAAGAGTGCATTCAGGATGCTCAGAACTCGCCATAGCTGCACCCTaGGGAGCTGCGTGCAATGTG | + |
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Preference number: 4 (lower is better) Translates to: FWGQKGETPRVHSGCSELAIAAP*GAACNV Trigger: CACATTGCACGCAGCTCCCCAGGGTGCAGCTATGGC...GAGTTCTGAGCATCCTGAATGCACTCTTGGAGTCTCTCCTTTCTGTCCCCAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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| CDS-3UTR GCA 90 bp | GGGGACAGAAAGGAGAGACTCCAAGAGTGCATTCAGGATGCTCAGAACTCTCTGCAAACTGCCTCCCTGTaGCCTGTAGCATTGGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: GDRKERLQECIQDAQNSLQTASL*PVALGK Trigger: CTTCCCCAATGCTACAGGGCACAGGGAGGCAGTTTG...CAGAGAGTTCTGAGCATCCTGAATGCACTCTTGGAGTCTCTCCTTTCTGTCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000015227.4 |
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| CDS-3UTR GCA 90 bp | CTTCTGGGGACAGAAAGGAGAGACTCCAAGAGTGCATTCAGGATGCTCAGAACTCAGGAGCCATGTCCCTaGAAACTTCTGAGCACTGAA | + |
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Preference number: 4 (lower is better) Translates to: LLGTERRDSKSAFRMLRTQEPCP*KLLSTE Trigger: TTCAGTGCTCAGAAGTTTGCAGGGACATGGCTCCTG...AGTTCTGAGCATCCTGAATGCACTCTTGGAGTCTCTCCTTTCTGTCCCCAGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040042.11 |
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| CDS-3UTR CCA 90 bp | GGACAGAAAGGAGAGACTCCAAGAGTGCATTCAGGATGCTCAGAACTCTCTGAGGTTCCAGGTACAGGATaGCAAAGCTCTGATAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: GQKGETPRVHSGCSELSEVPGTG*QSSDSQ Trigger: CTGACTATCAGAGCTTTGCCATCCTGTACCTGGAAC...CTCAGAGAGTTCTGAGCATCCTGAATGCACTCTTGGAGTCTCTCCTTTCTGTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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| CDS-3UTR CCA 90 bp | CTTCTGGGGACAGAAAGGAGAGACTCCAAGAGTGCATTCAGGATGCTCAGAACTGTTCCAGGTACAGGATaGCAAAGCTCTGATAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: LLGTERRDSKSAFRMLRTVPGTG*QSSDSQ Trigger: CTGACTATCAGAGCTTTGCCATCCTGTACCTGGAAC...AGTTCTGAGCATCCTGAATGCACTCTTGGAGTCTCTCCTTTCTGTCCCCAGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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| CDS-3UTR TCA 90 bp | GTGCTTCTGGGGACAGAAAGGAGAGACTCCAAGAGTGCATTCAGGATGCTCAGAGGAAAGAAAAGAATCTaGTCTTCTGTCAGGTTGGCT | + |
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Preference number: 4 (lower is better) Translates to: VLLGTERRDSKSAFRMLRGKKRI*SSVRLA Trigger: AGCCAACCTGACAGAAGATCAGATTCTTTTCTTTCC...TCTGAGCATCCTGAATGCACTCTTGGAGTCTCTCCTTTCTGTCCCCAGAAGCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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| CDS-3UTR TCA 90 bp | CAGAAAGGAGAGACTCCAAGAGTGCATTCAGGATGCTCAGAACTCTCTGAGGGTGGAAAGAAAAGAATCTaGTCTTCTGTCAGGTTGGCT | + |
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Preference number: 4 (lower is better) Translates to: QKGETPRVHSGCSELSEGGKKRI*SSVRLA Trigger: AGCCAACCTGACAGAAGATCAGATTCTTTTCTTTCC...ACCCTCAGAGAGTTCTGAGCATCCTGAATGCACTCTTGGAGTCTCTCCTTTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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| CDS-3UTR CCA 90 bp | CAGAAAGGAGAGACTCCAAGAGTGCATTCAGGATGCTCAGAACTCTCTGAGGGTCGCAGAAACCATACTTaGGAAAGAAAAGAATCTGAT | + |
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Preference number: 4 (lower is better) Translates to: QKGETPRVHSGCSELSEGRRNHT*ERKESD Trigger: ATCAGATTCTTTTCTTTCCCAAGTATGGTTTCTGCG...ACCCTCAGAGAGTTCTGAGCATCCTGAATGCACTCTTGGAGTCTCTCCTTTCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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| CDS CCA 90 bp | ATCCCATCTAGCTTTCGGAAGGTGCTGACAGCCATAGCTGCACCCTaGGGAGCTGCGTGCAATGTGGTGGCCTCAGCTCGGTGTCCCTGC | + |
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Preference number: 5 (lower is better) Translates to: IPSSFRKVLTAIAAP*GAACNVVASARCPC Trigger: GCAGGGACACCGAGCTGAGGCCACCACATTGCACGCAGCTCCCCAGGGTGCAGCTATGGCTGTCAGCACCTTCCGAAAGCTAGATGGGAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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| CDS TCA 90 bp | ATAGTCAGTCTCAGCAACCACCATATGCACTGGTCCACGGGCCCGTaGGACTTGGAACAAGAAGCGGCCAGGGACCCCTGTGTTCTCAAA | + |
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Preference number: 5 (lower is better) Translates to: IVSLSNHHMHWSTGP*DLEQEAARDPCVLK Trigger: TTTGAGAACACAGGGGTCCCTGGCCGCTTCTTGTTCCAAGTCTCACGGGCCCGTGGACCAGTGCATATGGTGGTTGCTGAGACTGACTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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| CDS-3UTR CAA 90 bp | GAGAGACTCCAAGAGTGCATTCAGGATGCTCAGAACTCTCTGAGGGTAGCCCACAGGCTTTCGAGTCCTTaGGCCCAGCGAACTGGCTGT | + |
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Preference number: 5 (lower is better) Translates to: ERLQECIQDAQNSLRVAHRLSSP*AQRTGC Trigger: ACAGCCAGTTCGCTGGGCCAAAGGACTCGAAAGCCT...GTGGGCTACCCTCAGAGAGTTCTGAGCATCCTGAATGCACTCTTGGAGTCTCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040042.11 |
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| CDS CCA 90 bp | ACTTGGAACAAGAAGCGGCCAGGGACCCCTGTGTTCTCAAAGAGTTaGCGTACCTGCCAACATATCCCATCTAGCTTTCGGAAGGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: TWNKKRPGTPVFSKS*RTCQHIPSSFRKVL Trigger: CAGCACCTTCCGAAAGCTAGATGGGATATGTTGGCAGGTACGCCAACTCTTTGAGAACACAGGGGTCCCTGGCCGCTTCTTGTTCCAAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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| CDS CCA 90 bp | ATAGTGCTGATGGGGGAGGTAGACCCAATAGGCTTTCGAGTCCTTTaGCCCAGCGAACTGGCTGTCAAGAGCAGGGTGAAGAACAACACA | + |
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Preference number: 5 (lower is better) Translates to: IVLMGEVDPIGFRVL*PSELAVKSRVKNNT Trigger: TGTGTTGTTCTTCACCCTGCTCTTGACAGCCAGTTCGCTGGGCCAAAGGACTCGAAAGCCTATTGGGTCTACCTCCCCCATCAGCACTAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040042.11 |
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| CDS TCA 90 bp | TGGTCCGCAGTCTCGCAGAAACCATACTTGGGAAAGAAAAGAATCTaGTCTTCTGTCAGGTTGGCTTCCCTGACTCGCCGCTCAAACACA | + |
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Preference number: 5 (lower is better) Translates to: WSAVSQKPYLGKKRI*SSVRLASLTRRSNT Trigger: TGTGTTTGAGCGGCGAGTCAGGGAAGCCAACCTGACAGAAGATCAGATTCTTTTCTTTCCCAAGTATGGTTTCTGCGAGACTGCGGACCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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| CDS GCA 72 bp | GAAGGTGCTGACAGCCATAGCTGCACCCTGGGGAGCTaGGTGCAATGTGGTGGCCTCAGCTCGGTGTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: EGADSHSCTLGS*VQCGGLSSVSL Trigger: CAGGGACACCGAGCTGAGGCCACCACATTGCACGCAGCTCCCCAGGGTGCAGCTATGGCTGTCAGCACCTTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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| CDS CCA 72 bp | AGCTTTCGGAAGGTGCTGACAGCCATAGCTGCACCCTaGGGAGCTGCGTGCAATGTGGTGGCCTCAGCTCGG | + |
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Preference number: 6 (lower is better) Translates to: SFRKVLTAIAAP*GAACNVVASAR Trigger: CCGAGCTGAGGCCACCACATTGCACGCAGCTCCCCAGGGTGCAGCTATGGCTGTCAGCACCTTCCGAAAGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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| CDS CAA 90 bp | GATAGTGCTGATGGGGGAGGTAGACCCAATAGGCTTTCGAGTCCTTaGGCCCAGCGAACTGGCTGTCAAGAGCAGGGTGAAGAACAACAC | + |
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Preference number: 6 (lower is better) Translates to: DSADGGGRPNRLSSP*AQRTGCQEQGEEQH Trigger: GTGTTGTTCTTCACCCTGCTCTTGACAGCCAGTTCGCTGGGCCAAAGGACTCGAAAGCCTATTGGGTCTACCTCCCCCATCAGCACTATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040042.11 |
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| CDS GCA 72 bp | CCAGGGACCCCTGTGTTCTCAAAGAGTTGGCGTACCTaGCAACATATCCCATCTAGCTTTCGGAAGGTGCTG | + |
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Preference number: 6 (lower is better) Translates to: PGTPVFSKSWRT*QHIPSSFRKVL Trigger: CAGCACCTTCCGAAAGCTAGATGGGATATGTTGGCAGGTACGCCAACTCTTTGAGAACACAGGGGTCCCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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| CDS CCA 72 bp | AAGAAGCGGCCAGGGACCCCTGTGTTCTCAAAGAGTTaGCGTACCTGCCAACATATCCCATCTAGCTTTCGG | + |
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Preference number: 6 (lower is better) Translates to: KKRPGTPVFSKS*RTCQHIPSSFR Trigger: CCGAAAGCTAGATGGGATATGTTGGCAGGTACGCCAACTCTTTGAGAACACAGGGGTCCCTGGCCGCTTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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| CDS TCA 72 bp | GTCTCGCAGAAACCATACTTGGGAAAGAAAAGAATCTaGTCTTCTGTCAGGTTGGCTTCCCTGACTCGCCGC | + |
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Preference number: 6 (lower is better) Translates to: VSQKPYLGKKRI*SSVRLASLTRR Trigger: GCGGCGAGTCAGGGAAGCCAACCTGACAGAAGATCAGATTCTTTTCTTTCCCAAGTATGGTTTCTGCGAGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000015227.4 ENSMUST00000040042.11 |
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